gi|00000000|ref|NC_000000|  Riemerella anatipestifer CH3, complete genome. [asmbl_id: NC_000000].2234477, gc%: 35.17%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1840407..1841537                   PHAGE_Riemer_RAP44_NC_019490: phage terminase large subunit; M949_1782; phage(gi418489900)     0.0                 MTSARISIIPEFEEKIEKEGVQEYFTVTNNEILNKFSGSSILFRGIKTSSGNQTANLKSIQGITTFVGDEMEEWESEEDYEKLILSIRQKNKQLRVILILNPTDSDHFIYKKYIENTHKIVQIDGVDVQISTHPDVLHIHTTYLDNIENLSEQFLSNIERIKQESIEQCTINGKLDQALFNKSKYALKIIGRWSDMAEGVIFTNWKEGDFDTSIPYCYGQDYGFSIDPDTLVKGAIDHKRKIIYADEKYYGNNQLSTDDLYLLNKSLIDRENDLIVGDSAEPRLIEDLRKKGLNIKSTKKKPGIVSASILKMLEYQIIVTENSHNLKKELRNYTWNDKKAGIPIDKHNHLIDALRYGFIELDEPIQNDLQQIASIL
1841651..1843009                   PHAGE_Riemer_RAP44_NC_019490: phage portal protein; M949_1783; phage(gi418489901)     0.0                 MNTIAQEIEKHKGERTLPDITLFNSQYEVKKHKIFTDLVKYPDRTVVSDYTDEKGNKQKQKVTIPLNRIGLPYQKKIVNIATTFLCGEPIKYTNNLEDDELFKAFLKVIEKNKMKFVDREIATSVGRFTECAELWYFTDEPNEHYGFRAKFRLKVKVLTPDIYSLYPKFDENDNLISFAREFKNGNKTIFEVYTDERIIRYEQEKEWKKISDIPNAIGKIPIVYYKQENVEWADVQTAIERLEHIYSNTAESNDRFSFPILKLKGKVTGQLSQDKSGRVLQLEEGADAEFANQPQANQSLTEETDRLERDVHDFTATPNISFDNMKGLGNMLAGSNAEFLFLSAHLKVMDKLAIYIPALQRRASIIKSHLQMFNVKLKNNDLDVEPIITPFIINNDADFVRFLMEANGNKPLYSQEYAMQKLGIKNPKEMIQQIQEEDDRINELANSKSFAI
1843009..1844052                   PHAGE_Riemer_RAP44_NC_019490: phage head morphogenesis protein; M949_1784; phage(gi418489902)     0.0                 MDFDTLHRKRVKQYGRTLEQIYNGLIARVSSLVVKSDITNKIYRFRNNKKILLEIEKALDSYYKNTLNTINIGTEKQWQFANEKYNALRIATLERLAHKLSKETYIREIEKVSKTPHNLKALHSFQQRKINDFTLSERVWSITQQVKSELEMAIDVSLSEGMSANELARKIKKNLNEPDRLYRRIRDKHGNLVLSQNAKYYNPGQGVYRSAHKNALRLAKEEINTAYRTSEQIRIMQNNDVVGVEIHLSPSHKVYDICDELAGRYPKNFIWNRWHIGCMCHRRTILKSDEELIKELNNNQELPPETSKYYIGAIPKQFNRWVKDNKDRFKNWKYKPEWIENNAKLLS
complement(1844047..1844196)       PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1785; phage(gi418489895)     9.62e-30            MTGTKAAEIMGVKASTFNCKKNDNNPRHWFNQKNLDDLVAFIKREAEKL
complement(1844232..1844381)       PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1786; phage(gi418489894)     2.60e-24            MKYFFKSLRSKWKEINTEGYEKTFVLELSLEQIILISITVIGLIWIMIK
complement(1844666..1844866)       PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1787; phage(gi418489892)     4.51e-16            MQKGFTFTNYGSHNLYELSRNEHNYCVNLQGEVMTTNESKTKDLKVDIPIPKNKTEAERWFKKFLG
complement(1844910..1845176)       PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1788; phage(gi418489891)     2.86e-59            MNEILHKRIADMTTFEMMESAYLIEKARSITMSIDDFAKTMGWDNRKVYKLLKGKILPEKIIRGGYDSLRQRKRPVFITEEVLKWIKN
1845310..1845966                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1789; phage(gi418489905)     5.74e-127           MNKKILELLKTKYKDLGLSESILKVTADRLARTVKEEAEETEITQAIESVESELRIYQSFEDRNRTLLKEVKDLKEKLEKNEPNPTPNPNPEPKPNEGNPEPNPMLELLKELKGEITALKSEKIQQTNKEKLTAKLQELGVNENFYKLHIDGKTFENDEQINEFANQLKESQDAFAQSINNDLLKSQANPLFGTQAVEGQVSADVQDYIKTKFNQTQN
1846014..1846340                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1790; phage(gi418489906)     2.97e-69            MFDQVDATYAGGVHINAEKAKERFSDGVVPAGTLLIPDTEGMFKPLNEDLSAVNVVGAIGLTAHDVVIDDMPLVAVVMAGTARKDALPDKEKAGVGFIKTVLPRISFV
1846360..1847442                   PHAGE_Riemer_RAP44_NC_019490: putative head protein; M949_1791; phage(gi418489907)     0.0                 MINANNIIPEFSQANLEAVLNAYPLGEFQYRNLFPLEFNPTLNFASIEGSMGAKIMADIVAIGSKASRKGRDFVESIKGEIPKIEIARDKDEKDLLRIQQLRNSVALYPQNQAIKKQLIDKIYEDVTFAVDGVNARLEWVAKQLISNGKFKTTVKNNAGGVANVEIDFKIKTQNAKKNWFSAADADPIKEITDLQSEARSKGYRYTTITLERDVLDVLLANPLVRQFVHGIPVNSSTVLPNITVEQLNAQLQGKGLPTFRLVESFVAHENKAGQVEATNGWEAGNILFSVSPILGTTQYTTTTEFNMNFPDVMSKAVKDDFILVKTFGHQDPISISTKGTAFAVPVLNNTRQNLILKTKF
1847442..1847765                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1792; phage(gi418489908)     1.65e-68            MTIGEYIREKLNLWSVSYSDALISAELSKLDLQIESEYNNETASKLDLFFYNLLPEMLLLPNSVSEGGYSISFDKKAVEGYYQMLCEKLGKPNLLPKPTIKDISNQW
1847759..1848082                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1793; phage(gi418489909)     1.10e-73            MVKQYPYILKLFQEAEATFNQATAEWEGGEAKWVTVGYCRDEINGGGSKITKTDGEAYVYSAVVYAPKHCPSINTGAKIQVWDGNVLRLEATVQRFGKEQLHTRIWV
1848097..1848516                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1794; phage(gi418489910)     8.80e-94            MNDINAILKQAEEDYTQKLIRALKFVGEKCVNEAKANGTYQDQTANLRNSKGYVIVADGRVIDENFSISANGSVPSKENPLKYGRELAYQVAPKFRGIALIVVAGMRYASYVESKGRVVLTSAEQLAKIQVPILLKQLQ
1848513..1848923                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1795; phage(gi418489911)     5.47e-95            MKRTVLDGKQWILDLLLRAKVNEFINGQIYKYNRPVNSNKEDIVINSLTMTNQMLQNGVFNINCYVPKKSVTVGGITQLHKDNKRLKEIADKVYAILNDVWENDYNLDVETHQDFEEQNENYYNFRVQLNAYPTFN
1848951..1849454                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1796; phage(gi418489912)     7.46e-53            MPLFNLGVAAIELSNIATDGGVGTSFAALGLTQEGTCKIQFGDPTIKKLNVEEFDGGADAILTSGEKKIEFTVANPDEDTLVAVFGGTKSGSAGTTVYKAPSSAVTIERSLKITPKKGLGFIFPRALITASFTPDIGKDNWVGVVVKAEVLTPTKTGEAEWSTFRVA
1849534..1849995                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1797; phage(gi418489913)     6.14e-105           MTTTEQIQAEKKELDLLTEKGFEIEVASFFGKKRKFQAKKMSLGRMLRLSKIFITMELNDEALNSKDFQEQLSAQYQAVLQNAHKVAKVIAVCVTDNKLLSWWIQRQVLKSYTSKEILNFAQTLLKEADYANFILSIALLNGNRPTKANPIEK
1850013..1850198                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1798; phage(gi418489914)     3.80e-38            MGQICHHFGWTLDYLLWEVDWRIVQRMLIDAPDYDDDKKEKEIDLTEQTPEDLEKMLEKYR
complement(1850502..1851335)       hypothetical protein; M949_1799                                                      N/A                 MAGFYIFCDESIKKGKYYSNFYGGLLIDKNDFEKANNLLLSSLRDLNIENSELKWSSVNTYGLQSYVQMMNVFFELIKNNTIKVRIMFTDNRFLTQDLPREYHKKEYHLLYYQFLKHAFGLSYINSDIPIDLEIFFDELPDKKQKNEDFKKFVYGIQFLPNFISSKINIKKEAIYEVDSKKHLLMQCLDVVLGAIAFRLNDMHKEKPVGSRRRGKRTIAKEKLYKHINKKIREIRPNFNIGITTGTDGDLLNRFLHPYRHWLFIPKNASYGTNDEDE
complement(1851491..1852183)       PHAGE_Riemer_RAP44_NC_019490: Ig domain-containing protein; M949_1800; phage(gi418489873)     9.72e-142           MKKALLFFALSLATLGTFTSCSRDDDSTTVADNYSITPTEVSIKYDQTHKFTIKNNGSEVSGSSFSWKSSDEKRGTVDANGLLTAKKVGTFDVTATKNGKTLTSKVTITPYQTFFTEPLMFFGKTKADVKASETRKLTRETTTALVYEGENSSVNRIGYIFDNNGNMTSAIVMFPTSSSSTDKVTTFYKERYLVLSTENNVVQMKHLDESIYMSMGYDSTLGFHVIYTKK
1852369..1853592                   PHAGE_Riemer_RAP44_NC_019490: putative tape measure domain protein; M949_1801; phage(gi418489915)     0.0                 MNTNNGGLFFGAAIDMTQWRKDLREIQADILGLNQKTQEQTRQMDTSFKNLSISIASYFSGQALMGFTRQLINVRGEFQKTEIAFSTMLKSKEKANQLMGQMVDLAAKTPFGLNDVTEGAKRLLAFQVPAEQVTETLTRMGNIAAGLGVPMGQLIHVYGQVKAQGKMMTNDLYQFMNAGIPILSELGKVLGKSEAEIKDMVSAGKIGFPEVQAVIKNMTDEGGLFFNLMEEQSKTLSGKVANLEDAFDQMLNKIGEGSEGLLNSGIEGATYLVEHYEEVGSVILGLIATYGSYKAALILIAQMERIYAMAKVQQSLAIMAGETGITTARALQIVVTMQLQRAQAMLNATMLANPYVLAGAAIIGLIATLWSLSDSTDAATRAQEKLNEEQKRKKRFPKKRKGELTTL
1853682..1856846                   PHAGE_Riemer_RAP44_NC_019490: putative tape measure domain protein; M949_1802; phage(gi418489915)     0.0                 MTLEEIQNAKLEDLQKRVNNAESQRQQKANKEKIQSLDEEIKKYEEIYNSIANSGGANLSTLNDYLNRINELKAQKDQLIQQTQEEEELLRFQNKTLEDKKKHWEKVVAEAKKQKEEIEKQATPIANNTKSIEGMQTPLSTISSMLQKMSSQWISINRLLSKATNELKKIENIQNKAKDKSSFTYEDWEAQKNKAEEDRKKYAPNSKEWLQAKKDYDEATKALKKWSFEQDKGKTTYSKGQVGWLDQEINRLNELIKKSKEGSIQYRKLVAERKKLEERRDRLNGKYDNAPIKGSLGYLEKELSDIREKIKNKTSVNDEKHLKELYNKEKELVDKIEKYKEKYKTKNVEEELSELKRRINLRDKYLQLGINRPELINEDTVNNLFPDLKDKSYVQVLEEKRKAYLGLIEAQKATEQTTKDLILIEEELKKAKGVETFMQGVNDRISELKERYKGAELIDKLKKAKSLQLGGTEEENLEKNKAYASALKEAQKDYDKFYRDLLEQQKTYEEKSLELQKEYADLKATERYKNASEEEQKKIDKHYKKEQSKLDMDAFKESGDWALAFSDLEYMSQSTIERVIKNFEDFKRAKEQNLEPTELRELNDTLNKLRARAGNNPFTGIISGVKGYVQANKEAKTAQDEYNATAEKFGKNSPQAQEAYRKMTDAEQEAIKAKQLLNAQLQKGQDIFNATMQGVTDLADAFGGMDDATKDAVEDIMAVGNAAFDLAKSISSENIAGMISAGLKLIGSIFKALNGDKRREREVRRQEQAIRKLKDAYDELSHALDKAFGSQKQKGQRELIQNLRQQQQAIQNAKNAESQKKKKDQGKIDEYNAQYKATERAIKDLEESIIKDVLQTDIPEMAAKIGDVLEDSFLRGKDGLKDLDKAFNNMLRGIARHQLDLFLQDEMKGFYEKARSYAGFDEKGNGSFDGFQDWEIESLKSMWQSISENGRKFLEGMSNVYEGFQELEDPDSLAGAMRGMSEETAGILAGQFNAIRIHVAEIQKNQGFGLDIAKSSLLNLMKIEENTRPLRNIDKQISEINSKLKSNDTRGLGL
complement(1856849..1857211)       PHAGE_Riemer_RAP44_NC_019490: DNA-binding protein; M949_1803; phage(gi418489861)     3.30e-83            MKINTKKDYQRYLQEVDELMKKGEELLTSTELNRISVLSSALEEYEDAFYPIAQPKTLPEMVELRLFEKKMSQTDFAKVSGISLSKVNQIIKGNRKVDIPFAKAVYQVLDIPADFVLSHS
1857230..1857529                   hypothetical protein; M949_1804                                                      N/A                 MSYSACVPTNFTNTVLAPKITLATIRQWLPFILKTNRPLPTLSTLLKDCFISAKLDQSASFTMRYQRQTSILWSGRSFRYLFSGAFEIITIRQMYEIIS
1857558..1857989                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1805; phage(gi418489916)     1.29e-96            MKLQDIIQQAKKQGLCEEWYNEMLSSPTLETLCRMFFKGDDWTLKNNFPSEKMLHYFRGETEQYGLFLDALGKVETMPKMAFFGYSNVELNYGDFSVSSLILRGNSKGKITAKDYSVVFVTVLDNAEVVVEEQDHAKVKIFRR
1857986..1858975                   PHAGE_Riemer_RAP44_NC_019490: putative phage tail protein; M949_1806; phage(gi418489917)     0.0                 MTKEVLYTLNGKYFKDFGVFISESKGLLDKPKLKSRRSYDWAEYHGKAVDLAKPKYDEREIELKGWVEGETWSQMKTNFDTLLSEFDKEGLARLVIEYLGNALVFDVYLSDGVELEKSFKEGKMVGVFTLKMKDPNPIKRVFKLVGSDLQLSFNAQFWVDINIDGINETRKGNITINKTVPSRELSGYGFYGRNLMLTPRIYNGYAVEASTSTPLIEGQEYVISFDIKGQNDGGLFLNNSIKVNIPINPSPNEWFRVSKVFTFIKNDYQGKEIFPHIYGATDVRKVKLEKGNKATGYTPAPEDTHYITISGNTDEITNLQTNAEELWSL
1858963..1862418                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1807; phage(gi418489922)     0.0                 MEFIVIQGDKTLNLNNRKPLCSVTKAEHRQSLLSEDVINITVESKTPLALQVGNYIEYENRRYTLNSAPKVKKEQGYYTYDLVFEGVQYLLRDKVYFNLDAQGFQNTADFPLTGEINIFLTTLITNINSISDFTWVLGEYPQNTETKTLTFNNENCLAVLQKICQEYDTEFEIKQDLERKSYTLNIKKIGETLNQTFEYGKGNGLYSLSRENANDNVVTRLYVFGSTNNIKSGYRDYSQRLRLPISHGKDYIQDDAKVKLFGLKEGVKNFDDIKPTFKGIVSGVTNLENGSQEIEVSNMDFDLNETDSNGTKYLLNDTPAKLHINKGNLAGYEFELLKNGGYNHATKTFRVKQFTDERGQKFPEAGSVFSFAVGDEFTLLDIAMPEQYITNAENKLLEEGQKEYEKQSVNNLKYNLELDPLYLQQIGANTSIFFKIGDYIRVIDEPLKIDKTTRIVDITRDLLDEYNYKIGIADTYEISFVASLLTDIKDTKTVIKTQEQINRQNYLNGYCNLQELRENVFDVEGYFDPTRIKPESIETNMLSVGARSQQFALENISLNPNIEGNPARTFISGGKLVHFSLEDDIREWNILPYSRNDLLNQVYYVYAKCSRGNSMGVWHITTEQIRFDSRSDYYYFLCYLLYTPKDGKREAEAMYGNVFMHGGQITAGRIKSLNGQTYFDLDSGEIAGTIKFRSSTGTYEDVGNAITLLNNANANLGTMAWQNSVEKAMLGDTIVQGGYIKTELLNASAIVSNGGGATSAELNNAINSIIIGGRNLVLDSKKTITHSDYNFSYEFEDDFSKIQGQTITISIDIEVSDITSGVRIGFEPSFLFQDGSRMYLRCWKYLNLGESFKGRISKTYTIPNKPIQSMEQKGMYVQVQGRITKVSNPKFELGNKATDWTPNPLDIEVQFANLQQGIANMQTSLSDVKTKTDNFASIQGGLMMANLMSVGSNQANQNAFISGITDEGAMSVRFGAGANYANKHNAPFRVLDNGKMIAQDADITGKIIATGGKIGDWEINGSSFRSSSIGSNDSWAQYSSYAFFSPETFLIRKNGSERGETKEVMMGITSSISTGSEGATAAIKSNIKKTQYDFDRDNVALILEAKNGVTNTALDILNGDIRVGGEVGYTGELFLGGVWLTIRKGIITNYS
1862445..1862768                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1808; phage(gi418489924)     2.54e-71            MKTKNLQKVNERVATTLMESIGEKQIYYQYETDYNNKTPQMVNFSTQLQDGNNLSGSYSKGGGFSLNGQGVKNVEDLQVVNSVLDTILEIINGFEVEKKEAEDGNNK
1862797..1863084                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1809; phage(gi418489925)     3.99e-60            MAVFPFIFLKKKKYQSNRYLLNHEKIHLRQQLELLILPFFVWYGLNYLWNLFRYKNHRQAYRNIIFEREAYENQNDLEYLKNRKLWQIFNKRRTL
1863081..1863602                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1810; phage(gi418489926)     1.53e-123           MIKEFIITNLMNIHTGTASQKILGTIKLAAAPAIGISLTERFIGWYIENQIFMTFVFVALFLDHILGSWVHWRKRDFSFKENVYGLFGKTTSVIVGYVLFEMVHQIVKDVDFIAIYFKVLLQLMVLLYPAGSAMGNLSILTNGKFPPVGWMKKLRKFNEEADLETFKTKKYEE
1863592..1864170                   PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; M949_1811; phage(gi418489927)     1.69e-118           MKSKFLLIIAVLLLFSCRTRKKTDTHIQSKTVEVKLKDSISVREIKQEQTTKVQDKLQIDKHSKHQEKKIEIFGNTEPETPFVFHEVEGKDTLQSIIINGNAQFSVKSFKKSSQHTTEKKEEQEHLNEVQELARNAVSQRTINEVANEIRAVSNEVKSSGFTFGTWVWIIIGSILIIAGAVLYFYLKRIKLF
1864193..1864747                   PHAGE_Riemer_RAP44_NC_019490: N-acetylmuramoyl-L-alanine; M949_1812; phage(gi418489928)     6.19e-132           MYLKTFPIAGHHNADSGAVYNGRKEADLTKEARNLFVKYFPNGKNELILDNDNETNLQLQRRIKPGAGSVLLDTHFNAGPTTATGTECLVNRKDFVNKNSMSYRMADEISKATSEILGIPNRGVKCESTTRHGRLGILNLGAGCAVLWEICFISNPNDMKQWDLKKEILMKKIAEIAAKYDDMR
