Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region,
   the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.

Method 2:
1. If the number of certain phage organism in this table  is more than 50% of the total number of CDS of the region, that phage 
   organism is considered as the major potential phage for that region; the percentage of the total number
   of that phage organism in this table in the  total number of proteins of the region is calculated and 
   then multipled by 100; the percentage of the length of that phage organism in this table in the length 
   of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).

Method 3:
1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber',
   'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased 
   by 10 for each keyword found.
2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
3. If there are at least 40 proteins in the region, the score will be increased by 10.
4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of
   the total number of proteins in the region, the score will be increased by 10.

Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
   


Totally 8 intact prophage regions have been identified.




gi|00000000|ref|NC_000000|  Shigella dysenteriae 1617, complete genome. .4302517, gc%: 51.23%
                                  REGION         REGION_LENGTH            COMPLETENESS(score)           SPECIFIC_KEYWORD                             REGION_POSITION          TRNA_NUM                 TOTAL_PROTEIN_NUM       PHAGE_HIT_PROTEIN_NUM            HYPOTHETICAL_PROTEIN_NUM         PHAGE+HYPO_PROTEIN_PERCENTAGE    BACTERIAL_PROTEIN_NUM            ATT_SITE_SHOWUP                  PHAGE_SPECIES_NUM                MOST_COMMON_PHAGE_NAME(hit_genes_count)    FIRST_MOST_COMMON_PHAGE_NUM      FIRST_MOST_COMMON_PHAGE_PERCENTAGE   GC_PERCENTAGE                 
                                 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
                                  1              9.4Kb                    incomplete(60)                transposase                                  232982-242479            1                        25                      10                               4                                56%                              11                               no                               6                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Clostr_phiCT19406A_NC_030950(1),PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1),PHAGE_Bacill_Andromeda_NC_020478(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Clostr_phiCDHM13_NC_029116(1),PHAGE_Bacill_BM5_NC_029069(1),PHAGE_Pseudo_EL_NC_007623(1),PHAGE_Bacill_Glittering_NC_022766(1),PHAGE_Vibrio_12A10_NC_029067(1),PHAGE_Lactob_LfeInf_NC_029058(1),PHAGE_Vibrio_ICP1_NC_015157(1),PHAGE_Clostr_phiCDHM11_NC_029001(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Clostr_phiCD506_NC_028838(1),PHAGE_Haemop_SuMu_NC_019455(1),PHAGE_Clostr_phiCD481_1_NC_028951(1)   3                                8%                               46.67%                        
                                  2              10.5Kb                   incomplete(30)                transposase                                  250937-261446            1                        25                      8                                5                                52%                              12                               no                               2                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfIV_NC_022749(1)   6                                8%                               51.81%                        
                                  3              7.2Kb                    incomplete(30)                transposase                                  321942-329223            0                        10                      6                                0                                60%                              4                                no                               4                                PHAGE_Synech_S_CAM22_NC_031903(2),PHAGE_Bacill_Bobb_NC_024792(1),PHAGE_Lactob_LP65_NC_006565(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Bacill_SPO1_NC_011421(1),PHAGE_Bacill_Bp8p_C_NC_029121(1),PHAGE_Bacill_CampHawk_NC_022761(1),PHAGE_Bacill_phiAGATE_NC_020081(1)   2                                20%                              52.76%                        
                                  4              10Kb                     incomplete(40)                protease,transposase                         382423-392456            0                        17                      10                               3                                76.4%                            4                                no                               7                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Bacill_SP_15_NC_031245(1),PHAGE_Achrom_JWAlpha_NC_023556(1),PHAGE_Achrom_phiAxp_3_NC_028908(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Dinoro_DFL12phi1_NC_024367(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_RB43_NC_007023(1)   2                                11.76%                           51.89%                        
                                  5              16.5Kb                   intact(110)                   transposase,integrase                        444186-460712            1                        26                      17                               2                                73%                              7                                yes                              10                               PHAGE_Pseudo_MD8_NC_031091(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Mycoba_ScottMcG_NC_011269(1),PHAGE_Pseudo_phiPsa374_NC_023601(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Cellul_phiST_NC_020842(1),PHAGE_Pseudo_VCM_NC_029065(1)   6                                11.53%                           50.41%                        
                                  6              13.1Kb                   incomplete(60)                transposase                                  539160-552316            6                        25                      14                               5                                76%                              6                                no                               8                                PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Entero_P1_NC_005856(2),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Shigel_Stx_NC_029120(1)   6                                12%                              49.86%                        
                                  7              19.4Kb                   intact(150)                   transposase,capsid,terminase,portal          654485-673918            0                        36                      26                               2                                77.7%                            8                                no                               13                               PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Pseudo_MD8_NC_031091(2),PHAGE_Psychr_pOW20_A_NC_020841(1),PHAGE_Burkho_BcepF1_NC_009015(1),PHAGE_Pseudo_LMA2_NC_011166(1),PHAGE_Pseudo_Pq0_NC_029100(1),PHAGE_Pseudo_DL60_NC_028745(1),PHAGE_Pseudo_14_1_NC_011703(1),PHAGE_Vibrio_vB_VchM_138_NC_019518(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Pseudo_PB1_NC_011810(1),PHAGE_Pseudo_NH_4_NC_019451(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Strept_SF3_NC_028952(1),PHAGE_Salico_CGphi29_NC_020844(1)   5                                5.55%                            50.18%                        
                                  8              13.4Kb                   questionable(90)              transposase,head,tail                        699489-712976            0                        20                      12                               3                                75%                              5                                no                               8                                PHAGE_Entero_Mu_NC_000929(3),PHAGE_Entero_phiP27_NC_003356(3),PHAGE_Escher_Av_05_NC_025830(2),PHAGE_Escher_D108_NC_013594(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Entero_SfMu_NC_027382(2),PHAGE_Citrob_vB_CfrM_CfP1_NC_031057(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Citrob_Miller_NC_025414(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_RB43_NC_007023(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Klebsi_KP15_NC_014036(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Aeromo_PX29_NC_023688(1),PHAGE_Klebsi_KP27_NC_020080(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Pseudo_JD024_NC_024330(1),PHAGE_Ralsto_RS138_NC_029107(1),PHAGE_Haemop_SuMu_NC_019455(1)   3                                15%                              50.42%                        
                                  9              5.1Kb                    incomplete(40)                transposase,tail                             775563-780668            0                        9                       6                                1                                77.7%                            2                                no                               3                                PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Entero_phiP27_NC_003356(1)   3                                22.22%                           51.76%                        
                                  10             30.6Kb                   intact(140)                   transposase,integrase,capsid,tail            965537-996167            0                        43                      20                               6                                60.4%                            17                               yes                              10                               PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Escher_Av_05_NC_025830(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Burkho_KL3_NC_015266(2),PHAGE_Citrob_IME_CF2_NC_029013(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Entero_RB16_NC_014467(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Oenoco_phiS11_NC_023571(1),PHAGE_Salmon_118970_sal3_NC_031940(1),PHAGE_Burkho_AH2_NC_018283(1)   6                                6.97%                            49.69%                        
                                  11             4.5Kb                    incomplete(60)                transposase,tail                             993154-997672            0                        18                      8                                1                                50%                              9                                no                               8                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Stenot_Smp131_NC_023588(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Burkho_KS5_NC_015265(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Stenot_S1_NC_011589(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Vibrio_VP58.5_NC_027981(1)   1                                11.11%                           51.14%                        
                                  12             9.7Kb                    incomplete(30)                transposase                                  1017229-1026967          0                        24                      7                                6                                54.1%                            11                               no                               4                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Sphing_PAU_NC_019521(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Crocei_P2559Y_NC_023614(1)   3                                8.33%                            48.36%                        
                                  13             13.5Kb                   intact(110)                   transposase                                  1054941-1068493          0                        26                      17                               2                                73%                              7                                no                               8                                PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Synech_S_CRM01_NC_015569(1),PHAGE_Proteu_vB_PmiM_Pm5461_NC_028762(1),PHAGE_Yersin_vB_YenM_TG1_NC_028820(1),PHAGE_Pseudo_PaBG_NC_022096(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Staphy_SPbeta_like_NC_029119(1),PHAGE_Yersin_phiR1_RT_NC_019909(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Pseudo_MD8_NC_031091(1)   6                                7.69%                            49.51%                        
                                  14             13Kb                     incomplete(50)                transposase,lysin                            1098762-1111852          0                        29                      13                               3                                55.1%                            13                               no                               6                                PHAGE_Entero_P1_NC_005856(3),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Natria_PhiCh1_NC_004084(1),PHAGE_Brevib_Sundance_NC_028749(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Strept_phiC31_NC_001978(1),PHAGE_Klebsi_phiKO2_NC_005857(1)   5                                10.34%                           48.84%                        
                                  15             17.1Kb                   questionable(70)              transposase,integrase                        1253313-1270470          0                        25                      21                               0                                84%                              4                                yes                              12                               PHAGE_Stx2_vB_EcoP_24B_NC_027984(6),PHAGE_Shigel_Stx_NC_029120(5),PHAGE_Shigel_POCJ13_NC_025434(5),PHAGE_Entero_933W_NC_000924(4),PHAGE_Stx2_II_NC_004914(4),PHAGE_Escher_phage_NC_004913(4),PHAGE_Entero_Min27_NC_010237(3),PHAGE_Shigel_Ss_VASD_NC_028685(3),PHAGE_Escher_TL_2011c_NC_019442(3),PHAGE_Entero_VT2_Sakai_NC_000902(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_HK225_NC_019717(1)   6                                24%                              50.15%                        
                                  16             24.7Kb                   intact(150)                   integrase,transposase,tail                   1291732-1316515          2                        54                      28                               7                                64.8%                            19                               yes                              16                               PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Escher_phi191_NC_028660(2),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Bacill_TsarBomba_NC_028890(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Entero_CAjan_NC_028776(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Salmon_118970_sal3_NC_031940(1),PHAGE_Acinet_IME_AB3_NC_023590(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Bacill_BCP78_NC_018860(1),PHAGE_Pseudo_MP1412_NC_018282(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Escher_slur01_NC_028831(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Shigel_Stx_NC_029120(1)   6                                5.55%                            49.67%                        
                                  17             9.6Kb                    questionable(80)              transposase                                  1329008-1338693          0                        29                      15                               4                                65.5%                            10                               no                               4                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Strept_20617_NC_023503(1)   7                                6.89%                            48.70%                        
                                  18             6.5Kb                    incomplete(50)                transposase,head                             1351851-1358371          0                        15                      7                                2                                60%                              6                                no                               4                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Bacill_G_NC_023719(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Escher_phiSUSP1_NC_028808(1),PHAGE_Escher_phiSUSP2_NC_028935(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Achrom_phiAxp_2_NC_029106(1)   3                                13.33%                           50.91%                        
                                  19             10.5Kb                   incomplete(60)                transposase,tail                             1596406-1606991          0                        18                      12                               1                                72.2%                            5                                no                               9                                PHAGE_Shigel_SHSML_52_1_NC_031090(1),PHAGE_Geobac_E3_NC_029073(1),PHAGE_Escher_vB_EcoM_JS09_NC_024124(1),PHAGE_Microc_MaMV_DC_NC_029002(1),PHAGE_Shigel_Shf125875_NC_025437(1),PHAGE_Bacill_Shanette_NC_028983(1),PHAGE_Burkho_KS10_NC_011216(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Clostr_phiCDHM19_NC_028996(1),PHAGE_Bacill_0305phi8_36_NC_009760(1),PHAGE_Bacill_JL_NC_028982(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Escher_vB_EcoM_PhAPEC2_NC_024794(1),PHAGE_Clostr_phiCD506_NC_028838(1),PHAGE_Escher_APCEc01_NC_029091(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Clostr_phiCD481_1_NC_028951(1)   3                                5.55%                            50.96%                        
                                  20             20.8Kb                   questionable(90)              tail,transposase                             1706408-1727261          0                        37                      19                               5                                64.8%                            13                               no                               10                               PHAGE_Shigel_Ss_VASD_NC_028685(7),PHAGE_Escher_P13374_NC_018846(7),PHAGE_Entero_VT2phi_272_NC_028656(6),PHAGE_Escher_TL_2011c_NC_019442(5),PHAGE_Escher_PA2_NC_028449(4),PHAGE_Escher_phi191_NC_028660(4),PHAGE_Escher_D108_NC_013594(3),PHAGE_Entero_Mu_NC_000929(3),PHAGE_Entero_SfMu_NC_027382(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Mycoba_Bxz1_NC_004687(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Mycoba_ArcherS7_NC_021348(1),PHAGE_Mycoba_Myrna_NC_011273(1),PHAGE_Aeromo_PX29_NC_023688(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Pseudo_JD024_NC_024330(1),PHAGE_Mycoba_Alice_NC_028986(1),PHAGE_Entero_PsP3_NC_005340(1),PHAGE_Entero_fiAA91_ss_NC_022750(1),PHAGE_Mycoba_Cali_NC_011271(1),PHAGE_Escher_pro483_NC_028943(1)   7                                18.91%                           49.61%                        
                                  21             7.2Kb                    incomplete(40)                transposase,capsid                           1769042-1776326          4                        14                      9                                1                                71.4%                            4                                no                               7                                PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Salmon_118970_sal4_NC_030919(1)   2                                14.28%                           49.09%                        
                                  22             7.6Kb                    incomplete(60)                transposase,tail                             1777335-1784945          0                        18                      9                                4                                72.2%                            5                                no                               6                                PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Entero_phiP27_NC_003356(1)   3                                11.11%                           49.42%                        
                                  23             6.1Kb                    incomplete(60)                transposase                                  1861140-1867251          0                        22                      9                                2                                50%                              11                               no                               2                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfIV_NC_022749(1)   5                                9.09%                            47.61%                        
                                  24             11.1Kb                   questionable(70)              head,portal,transposase                      1878233-1889341          0                        22                      17                               1                                81.8%                            4                                no                               4                                PHAGE_Salmon_SEN34_NC_028699(7),PHAGE_Haemop_Aaphi23_NC_004827(3),PHAGE_Entero_P1_NC_005856(2),PHAGE_Vibrio_CP_T1_NC_019457(2),PHAGE_Aggreg_S1249_NC_013597(2),PHAGE_Psychr_pOW20_A_NC_020841(1),PHAGE_Cellul_phiSM_NC_020860(1),PHAGE_Vibrio_KVP40_NC_005083(1),PHAGE_Klebsi_JD001_NC_020204(1),PHAGE_Vibrio_vB_VchM_138_NC_019518(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Vibrio_VH7D_NC_023568(1),PHAGE_Iodoba_phiPLPE_NC_011142(1),PHAGE_Pseudo_KPP12_NC_019935(1),PHAGE_Pseudo_LBL3_NC_011165(1),PHAGE_Vibrio_nt_1_NC_021529(1),PHAGE_Vibrio_ValKK3_NC_028829(1),PHAGE_Bdello_phi1422_NC_019525(1),PHAGE_Edward_PEi21_NC_021342(1),PHAGE_Pseudo_DL68_NC_028971(1),PHAGE_Pseudo_vB_PaeM_PAO1_Ab27_NC_026586(1)   9                                31.81%                           52.16%                        
                                  25             28.4Kb                   incomplete(60)                transposase,integrase                        2161892-2190309          0                        26                      11                               8                                73%                              7                                yes                              8                                PHAGE_Entero_mEp235_NC_019708(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Escher_HK75_NC_016160(2),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Geobac_E3_NC_029073(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Bacill_AR9_NC_031039(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Lactoc_WRP3_NC_027341(1),PHAGE_Shigel_Stx_NC_029120(1),PHAGE_Shigel_POCJ13_NC_025434(1)   2                                7.69%                            49.82%                        
                                  26             8.6Kb                    incomplete(50)                transposase                                  2443405-2452095          0                        22                      12                               2                                63.6%                            8                                no                               6                                PHAGE_Salmon_SJ46_NC_031129(3),PHAGE_Entero_P1_NC_005856(2),PHAGE_Escher_TL_2011b_NC_019445(2),PHAGE_Thermu_TMA_NC_015937(1),PHAGE_Staphy_42E_NC_007052(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Thermu_phiYS40_NC_008584(1),PHAGE_Caulob_Cr30_NC_025422(1)   4                                13.63%                           50.04%                        
                                  27             9.1Kb                    incomplete(60)                transposase,tail                             2508988-2518138          0                        20                      12                               4                                80%                              4                                no                               7                                PHAGE_Escher_Av_05_NC_025830(3),PHAGE_Entero_P1_NC_005856(3),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Shigel_SHSML_52_1_NC_031090(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Escher_vB_EcoM_JS09_NC_024124(1),PHAGE_Shigel_Shf125875_NC_025437(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Aeromo_PX29_NC_023688(1),PHAGE_Escher_vB_EcoM_PhAPEC2_NC_024794(1),PHAGE_Escher_APCEc01_NC_029091(1),PHAGE_Escher_pro483_NC_028943(1)   4                                15%                              48.74%                        
                                  28             7.3Kb                    incomplete(60)                transposase,tail                             2521455-2528844          0                        14                      9                                0                                64.2%                            5                                no                               6                                PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Bacill_SP_15_NC_031245(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Aeromo_vB_AsaM_56_NC_019527(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Entero_WPhi_NC_005056(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Pseudo_MP1412_NC_018282(1),PHAGE_Burkho_BcepNY3_NC_009604(1),PHAGE_Burkho_Bcep43_NC_005342(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Entero_P2_NC_001895(1),PHAGE_Burkho_Bcep781_NC_004333(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Entero_SfMu_NC_027382(1)   3                                14.28%                           50.46%                        
                                  29             26.8Kb                   intact(100)                   transposase                                  2570827-2597678          0                        27                      16                               1                                62.9%                            10                               yes                              12                               PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Gordon_Cucurbita_NC_031029(2),PHAGE_Clostr_phiCD119_NC_007917(1),PHAGE_Clostr_phiCDHM19_NC_028996(1),PHAGE_Escher_4_NC_027364(1),PHAGE_Mycoba_MoMoMixon_NC_023733(1),PHAGE_Mycoba_ArcherS7_NC_021348(1),PHAGE_Mycoba_Myrna_NC_011273(1),PHAGE_Staphy_SPbeta_like_NC_029119(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Mycoba_Bxz1_NC_004687(1),PHAGE_Mycoba_Alice_NC_028986(1),PHAGE_Clostr_phiCDHM11_NC_029001(1),PHAGE_Clostr_phiCD506_NC_028838(1),PHAGE_Escher_121Q_NC_025447(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Clostr_phiCD481_1_NC_028951(1)   3                                7.4%                             51.52%                        
                                  30             10.5Kb                   incomplete(60)                transposase,portal                           2601156-2611696          0                        20                      14                               4                                90%                              2                                no                               8                                PHAGE_Bacill_G_NC_023719(3),PHAGE_Entero_P1_NC_005856(2),PHAGE_Entero_phiEF24C_NC_009904(2),PHAGE_Gordon_OneUp_NC_030917(1),PHAGE_Bacill_phiNIT1_NC_021856(1),PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1),PHAGE_Bacill_Grass_NC_022771(1),PHAGE_Bacill_BCD7_NC_019515(1),PHAGE_Mycoba_Dusk_NC_029079(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Bacill_Bp8p_C_NC_029121(1),PHAGE_Mycoba_Contagion_NC_022065(1),PHAGE_Lactoc_phiL47_NC_023574(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Bacill_SP_10_NC_019487(1),PHAGE_Mycoba_PegLeg_NC_021299(1),PHAGE_Mycoba_NelitzaMV_NC_028785(1),PHAGE_Mycoba_Myrna_NC_011273(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Mycoba_Adler_NC_023591(1),PHAGE_Mycoba_Mindy_NC_029093(1),PHAGE_Strept_TG1_NC_018853(1),PHAGE_Lactoc_WRP3_NC_027341(1)   4                                15%                              51.48%                        
                                  31             9.4Kb                    questionable(90)              transposase,capsid                           2706685-2716122          0                        25                      11                               5                                64%                              9                                no                               7                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Pseudo_NP1_NC_031058(2),PHAGE_Escher_slur01_NC_028831(1),PHAGE_Strept_20617_NC_023503(1),PHAGE_Mycoba_Rosebush_NC_004684(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Mycoba_Qyrzula_NC_008204(1),PHAGE_Entero_CAjan_NC_028776(1)   3                                8%                               48.96%                        
                                  32             9.1Kb                    incomplete(40)                transposase                                  2938776-2947965          0                        21                      9                                3                                57.1%                            9                                no                               5                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Prochl_P_SSM2_NC_006883(2),PHAGE_Salmon_SSE_121_NC_027351(1),PHAGE_Salmon_PVP_SE1_NC_016071(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Synech_S_SM2_NC_015279(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Synech_S_SKS1_NC_020851(1),PHAGE_Synech_S_CAM1_NC_020837(1)   3                                9.52%                            49.70%                        
                                  33             11Kb                     questionable(80)              transposase                                  3537029-3548083          0                        29                      13                               3                                55.1%                            13                               no                               7                                PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Strept_phiC31_NC_001978(1),PHAGE_Burkho_phi6442_NC_009235(1)   3                                6.89%                            50.30%                        
                                  34             6.6Kb                    questionable(80)              transposase                                  4120944-4127559          1                        23                      12                               4                                69.5%                            7                                no                               5                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Hypert_2_NC_014321(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Haemop_SuMu_NC_019455(1)   4                                8.69%                            47.82%                        
                                  35             15.4Kb                   intact(140)                   transposase                                  4132182-4147653          0                        29                      16                               5                                72.4%                            8                                no                               6                                PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Entero_BP_4795_NC_004813(1)   5                                10.34%                           50.07%                        
                                  36             40.4Kb                   intact(130)                   transposase,integrase,protease               4206188-4246607          1                        25                      17                               1                                72%                              7                                yes                              9                                PHAGE_Klebsi_vB_KpnP_KpV475_NC_031025(3),PHAGE_Entero_P1_NC_005856(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1),PHAGE_Klebsi_vB_KpnP_KpV41_NC_028670(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Pseudo_M6_NC_007809(1),PHAGE_Pseudo_MP1412_NC_018282(1)   3                                12%                              51.66%                        
