gi|00000000|ref|CP006747.1|  Yersinia pestis 8787 plasmid pCD1, complete sequence. 71523, gc%: 44.89%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
21299..21313                       attL                                                                                 N/A                 TTTTATTATCGAGTT
complement(28853..29047)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M484_4218; phage(gi41057343)     7.66e-15            MQSMSRRGNCLDNSPMERVFRNLKSEWLPVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
complement(29082..29309)           iSPsy24, transposase OrfB family protein; M484_4219                                  N/A                 MLTPQHIWLAREPVDMRRGIAIHYRPSASALARRSRLCLLQQRRVRVSKFCVGTNTGSGCEEAAVSFGSGRAVQE
29670..29888                       hypothetical protein; M484_4220                                                      N/A                 MRSPLAYGCSVYTVNVVTQLHNDIHKSAYKHKRLYHVLTGQASSAQPVFSMPHRGMKAPADINYNSVDNWRR
complement(30715..31581)           incFII family plasmid replication initiator RepA; M484_4221                          N/A                 MTNHQALFTHHYRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLANRIQRSITNLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVAAARRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEGRFVGNLDAVRREKARRVKERMLMSRNNNYTRLATGAT
31583..31594                       attL                                                                                 N/A                 CCTTCCCGCACT
complement(31890..32144)           replication regulatory RepB family protein; M484_4222                                N/A                 MSQIENAVTSSSKRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLCEDSGLTQTEMIERWIQREKAARTNAA
32782..33075                       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M484_4224; phage(gi41057343)     7.83e-17            MCRAWRNALETRPREKRLLFHSDQGGQYRSKKYRQLLWRNGVMQSMSRRGNCLDNSPMERVKVNHQCQVAPATIDFDIADISTPHTIGLRRLKLPFQ
complement(32947..33354)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M484_4223; phage(gi41057343)     4.14e-25            MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSFHW
complement(33378..33695)           PHAGE_Bacter_Diva_NC_028788: transposase; M484_4225; phage(gi971743573)              2.88e-09            MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
33750..33768                       attL                                                                                 N/A                 GTATTACTGATCCACTACA
complement(33867..34325)           hypothetical protein; M484_4226                                                      N/A                 MGGMAAHWFTYQYAVPFCGRAKTLVTLSNAEGESVLISPQQNTAQDISLFMPRELTVSQGDRVRFTRSDTDRGYVANSLWEVAGFTEDGAVRFRQGDQEKIVDPQKATEDRHIDLAYTLTAYGVQGASERFVIALFGAEGGRKRMATLHLFT
34517..34663                       PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; M484_4227; phage(gi41057344)            3.12e-06            MTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
complement(34989..35924)           PHAGE_Salmon_SP_076_NC_021782: agglutinating adhesin; M484_4228; phage(gi525972748)     4.76e-08            MGSGSMATGVDSVAIGPLSKALGDSAVTYGVSSTAQKDGVAIGAKASASDTGVAVGFNSKVDAQNSVAIGHSSHVAADHGYSIAIGDHSKTDRENSVSIGHESLNRQLTHLAAGTEDTDAVNVAQLKKEMAETLENARKETLAQSNDVLDAAKKHSNSVARTTLETAEEHANKKSAETLVSAKVYADSNSSQTLKTANSYTDVTVSNSTKKATRESNQYTDHKFSQLDNRLDKLDKRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVAFKAGVAYAGSSNVMYNASFNIEW
complement(35870..35998)           hypothetical protein; M484_4229                                                      N/A                 MLALRIPIALRLVLLLKQQNQQQLLWALVQWQQALILLQLVL
complement(36041..36292)           adhesin yadA; M484_4230                                                              N/A                 MTKDFKISVSAALISALFSSPYAFAEEPEDGSDGIPRLSAVQISPNVDPKLGVGLYPAKPILRQENPKLPPRGPQGPEKKELD
36708..36720                       attL                                                                                 N/A                 AATTTTTTTATTT
36898..37278                       PROPHAGE_Xantho_33913: ISxcC1 transposase; M484_4232; phage(gi21231060)              1.81e-38            MVERYPRDGFFKVFQILRRWGYVWNHKRVHRIYCLLKLNIRRKGKQRLPARTPSPLAVPERLNLSGAVDFMHDALICVDDYNREKLAIEIDLNLPTQHVIRVLDRIVVNRGYPVMGFEVQWDENVR
complement(37275..39590)           PROPHAGE_Xantho_33913: Tn5041 transposase; M484_4231; phage(gi21231545)              1.28e-33            MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRRGKHNRLGIALQLTTARFLGTFITDLTQVLPGVQHFVAVQLNIRRPEVLSRYAERDTTRREHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKILLPGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKRLLDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRRRDIWLKNSDRWGDLREKLLQGEEWQAQRVLVCRALGHPTDGHKGVQQLAVQLDETWRAVASRFEGNTEVHICNDGKYPSLTISSLEKLEEPLSLLRLNNRVRQLLPPVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVLMAEACNIGLEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRWGGGEVASVDGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTGGTSDIIFGLFWLLGYQFSPRLADAGEAVFWRVDKSANYGALDELARGCADLSKAENQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMAVGRVNKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSWMRSNGEETRDEDIARLSPLMHGHINMLGHYTFTLSDDILNGELRALNFNLNNELSP
39754..40305                       PHAGE_Salisa_1_NC_017983: hypothetical protein; M484_4233; phage(gi388570712)        1.10e-31            MRLFGYARVSTSQQSLDIQIKTLKDAGVKANRIFTDKASGSSADREGLDLLRMKVEEGDVILVKKLDRLGRDTVDMIQLIKEFDAQGVSIQFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGREEAKLKGVKFGRKRRINRKELLELHEQGMGATEIAKKMNIARSTIYKVINESQ
40324..40788                       hypothetical protein; M484_4234                                                      N/A                 MNLQNNLYSILEKVESLKNIKMLDKNNGEFTYIEGDYYFSDLTTDSLNIYEIKYLFTFENFDFFSNGKPNEVSVYKATNSFNSVCLGIKASLNSLDVERKELTVQFTYSMVFDASKGIPNFSNELETSMGLLRIAPKKLSNSFKDKGIEHNYVN
40927..41256                       hypothetical protein; M484_4235                                                      N/A                 MLTFFAKYYFDLFFNKEKNRKEKEITTRLEKRISKLEKENISLRDDLIKCKLEHIDEVMRIERSLNTQLKTNYKNNNNENLWAGIDDIIKTIECVSIESKIGGVKTNLK
41356..41622                       PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; M484_4236; phage(gi17546157)     4.67e-46            MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKF
41646..42455                       PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; M484_4237; phage(gi17546158)     1.41e-102           MEYLLAAYRIGVRRGCRLMMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFNGRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFHPHSSLNNLTPAEFARSHQKGPDL
complement(42603..43028)           tir chaperone family protein; M484_4238                                              N/A                 MRTYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEPTMKKEEDDHRPSSSHLLV
43061..43073                       attR                                                                                 N/A                 AATTTTTTTATTT
43248..43259                       attL                                                                                 N/A                 AAAAAAAAACAG
complement(43372..43803)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; M484_4239; phage(gi557307613)     5.63e-91            MHELEALLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERCENVILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLYEDITNIGVY
complement(43803..44951)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; M484_4240; phage(gi557307612)     0.0                 MIKQMRQQGAYIIDIATQVGCSERTVRRYLKYPEPPARKTRHKMVKLKPFMDYIDMRLAENVWNSEVILAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRTVRVETQPGYQLQHDWGEVELEVAGQRCKVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLAEHYDFLPRACRPRRARTKGKVERMVKYLKDNVFVRYRRFDSFTHVNQQLEQWMADVADKRELRQFRQTPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRSYSNEQQVASHRLCSASSGWQTVPEHHAPLWQQVSMVEHRPLSAYEELL
45016..45144                       hypothetical protein; M484_4241                                                      N/A                 MLGGADNTNGELPSYITGANTVKGFMLIISACTGFITSVAWA
45237..45722                       PROPHAGE_Xantho_33913: IS1477 transposase; M484_4242; phage(gi77747809)              2.37e-61            MDALATGRRIKCLTCVDDYTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSDVSHARKTISEWRQDYNECRPHSTLNYQTPSEFAAAWRKGNSDSEGSDITK
complement(45785..46177)           yopE regulator; M484_4243                                                            N/A                 MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFS
46446..47030                       outer membrane virulence protein yopE; M484_4244                                     N/A                 MSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM
complement(47170..47469)           plasmid stabilization system family protein; M484_4245                               N/A                 MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAKNPELGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHE
complement(47462..47704)           hypothetical protein; M484_4246                                                      N/A                 MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKDTSV
48180..48191                       attR                                                                                 N/A                 AAAAAAAAACAG
complement(48552..48710)           hypothetical protein; M484_4247                                                      N/A                 MVPITNVGIGYPGGTVVPITNVGIGYPSGTVVPITNTGIEHPSGNVIRIESD
complement(48878..49840)           PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; M484_4248; phage(gi33770536)     9.16e-120           MKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSL
complement(49840..51006)           PHAGE_Yersin_PY54_NC_005069: plasmid partition protein SopA; M484_4249; phage(gi33770537)     0.0                 MDLKSTLDRCIERGQFMTQEIAKSQFGNDSPAARTITRRWRITEAAELVGVTPQTIRNYEDSGKLPPPDTAMIGRVEQRTGYSIQQINDMRDVFKTRLSKPKGENPVVLAIAAHKGGAYKTSTSVHIAQWMALQGLRVLLIDATDPQATASLYHGYVPDLHIHEEDTLLPYYLGQRDDAAYAIKPTCWPNLEVIPSCLAVHRIESEIYGLHDQGKLPVAPHLLLRAAIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMSNIDLNGFEPDVRVLITKFSNAIGSQSQWMDDQIRNAWGGMVLKEVVRVTDEVGKGQVRMRTVFEQAANQRSTPAAWRNAVSIWEPVCAEIFNRLVKPRWENA
complement(51806..52000)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M484_4250; phage(gi41057343)     6.21e-14            MQSMSRRGNCLDNSPMERVFRSLKSEWLLVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
complement(52112..52570)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M484_4251; phage(gi41057343)     6.60e-32            MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVCRA
complement(52594..52911)           PHAGE_Bacter_Diva_NC_028788: transposase; M484_4252; phage(gi971743573)              2.88e-09            MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
52965..52983                       attR                                                                                 N/A                 GTATTACTGATCCACTACA
58359..58370                       attR                                                                                 N/A                 CCTTCCCGCACT
60271..60285                       attR                                                                                 N/A                 TTTTATTATCGAGTT
