gi|00000000|ref|CP006753.1|  Yersinia pestis 3067 plasmid pCD1, complete sequence. 71522, gc%: 44.89%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
9521..9535                         attL                                                                                 N/A                 TTTTATTATCGAGTT
complement(17075..17269)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M482_4260; phage(gi41057343)     7.66e-15            MQSMSRRGNCLDNSPMERVFRNLKSEWLPVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
complement(17304..17531)           iSPsy24, transposase OrfB family protein; M482_4261                                  N/A                 MLTPQHIWLAREPVDMRRGIAIHYRPSASALARRSRLCLLQQRRVRVSKFCVGTNTGSGCEEAAVSFGSGRAVQE
17892..18110                       hypothetical protein; M482_4262                                                      N/A                 MRSPLAYGCSVYTVNVVTQLHNDIHKSAYKHKRLYHVLTGQASSAQPVFSMPHRGMKAPADINYNSVDNWRR
complement(18937..19803)           incFII family plasmid replication initiator RepA; M482_4263                          N/A                 MTNHQALFTHHYRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLANRIQRSITNLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVAAARRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEGRFVGNLDAVRREKARRVKERMLMSRNNNYTRLATGAT
19805..19816                       attL                                                                                 N/A                 CCTTCCCGCACT
complement(20112..20366)           replication regulatory RepB family protein; M482_4264                                N/A                 MSQIENAVTSSSKRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLCEDSGLTQTEMIERWIQREKAARTNAA
21004..21297                       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M482_4266; phage(gi41057343)     7.83e-17            MCRAWRNALETRPREKRLLFHSDQGGQYRSKKYRQLLWRNGVMQSMSRRGNCLDNSPMERVKVNHQCQVAPATIDFDIADISTPHTIGLRRLKLPFQ
complement(21169..21576)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M482_4265; phage(gi41057343)     4.14e-25            MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSFHW
complement(21600..21917)           PHAGE_Bacter_Diva_NC_028788: transposase; M482_4267; phage(gi971743573)              2.88e-09            MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
21972..21990                       attL                                                                                 N/A                 GTATTACTGATCCACTACA
complement(22089..22547)           hypothetical protein; M482_4268                                                      N/A                 MGGMAAHWFTYQYAVPFCGRAKTLVTLSNAEGESVLISPQQNTAQDISLFMPRELTVSQGDRVRFTRSDTDRGYVANSLWEVAGFTEDGAVRFRQGDQEKIVDPQKATEDRHIDLAYTLTAYGVQGASERFVIALFGAEGGRKRMATLHLFT
22739..22885                       PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; M482_4269; phage(gi41057344)            3.12e-06            MTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
complement(23211..24146)           PHAGE_Salmon_SP_076_NC_021782: agglutinating adhesin; M482_4270; phage(gi525972748)     4.76e-08            MGSGSMATGVDSVAIGPLSKALGDSAVTYGVSSTAQKDGVAIGAKASASDTGVAVGFNSKVDAQNSVAIGHSSHVAADHGYSIAIGDHSKTDRENSVSIGHESLNRQLTHLAAGTEDTDAVNVAQLKKEMAETLENARKETLAQSNDVLDAAKKHSNSVARTTLETAEEHANKKSAETLVSAKVYADSNSSQTLKTANSYTDVTVSNSTKKATRESNQYTDHKFSQLDNRLDKLDKRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVAFKAGVAYAGSSNVMYNASFNIEW
complement(24092..24220)           hypothetical protein; M482_4271                                                      N/A                 MLALRIPIALRLVLLLKQQNQQQLLWALVQWQQALILLQLVL
complement(24263..24514)           adhesin yadA; M482_4272                                                              N/A                 MTKDFKISVSAALISALFSSPYAFAEEPEDGSDGIPRLSAVQISPNVDPKLGVGLYPAKPILRQENPKLPPRGPQGPEKKELD
24930..24942                       attL                                                                                 N/A                 AATTTTTTTATTT
25120..25500                       PROPHAGE_Xantho_33913: ISxcC1 transposase; M482_4274; phage(gi21231060)              1.81e-38            MVERYPRDGFFKVFQILRRWGYVWNHKRVHRIYCLLKLNIRRKGKQRLPARTPSPLAVPERLNLSGAVDFMHDALICVDDYNREKLAIEIDLNLPTQHVIRVLDRIVVNRGYPVMGFEVQWDENVR
complement(25497..27812)           PROPHAGE_Xantho_33913: Tn5041 transposase; M482_4273; phage(gi21231545)              1.28e-33            MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRRGKHNRLGIALQLTTARFLGTFITDLTQVLPGVQHFVAVQLNIRRPEVLSRYAERDTTRREHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKILLPGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKRLLDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRRRDIWLKNSDRWGDLREKLLQGEEWQAQRVLVCRALGHPTDGHKGVQQLAVQLDETWRAVASRFEGNTEVHICNDGKYPSLTISSLEKLEEPLSLLRLNNRVRQLLPPVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVLMAEACNIGLEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRWGGGEVASVDGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTGGTSDIIFGLFWLLGYQFSPRLADAGEAVFWRVDKSANYGALDELARGCADLSKAENQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMAVGRVNKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSWMRSNGEETRDEDIARLSPLMHGHINMLGHYTFTLSDDILNGELRALNFNLNNELSP
27976..28527                       PHAGE_Salisa_1_NC_017983: hypothetical protein; M482_4275; phage(gi388570712)        1.10e-31            MRLFGYARVSTSQQSLDIQIKTLKDAGVKANRIFTDKASGSSADREGLDLLRMKVEEGDVILVKKLDRLGRDTVDMIQLIKEFDAQGVSIQFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGREEAKLKGVKFGRKRRINRKELLELHEQGMGATEIAKKMNIARSTIYKVINESQ
28546..29010                       hypothetical protein; M482_4276                                                      N/A                 MNLQNNLYSILEKVESLKNIKMLDKNNGEFTYIEGDYYFSDLTTDSLNIYEIKYLFTFENFDFFSNGKPNEVSVYKATNSFNSVCLGIKASLNSLDVERKELTVQFTYSMVFDASKGIPNFSNELETSMGLLRIAPKKLSNSFKDKGIEHNYVN
29149..29478                       hypothetical protein; M482_4277                                                      N/A                 MLTFFAKYYFDLFFNKEKNRKEKEITTRLEKRISKLEKENISLRDDLIKCKLEHIDEVMRIERSLNTQLKTNYKNNNNENLWAGIDDIIKTIECVSIESKIGGVKTNLK
29578..29844                       PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; M482_4278; phage(gi17546157)     4.67e-46            MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKF
29868..30677                       PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; M482_4279; phage(gi17546158)     1.41e-102           MEYLLAAYRIGVRRGCRLMMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFNGRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFHPHSSLNNLTPAEFARSHQKGPDL
complement(30825..31250)           tir chaperone family protein; M482_4280                                              N/A                 MRTYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEPTMKKEEDDHRPSSSHLLV
31283..31295                       attR                                                                                 N/A                 AATTTTTTTATTT
31470..31481                       attL                                                                                 N/A                 AAAAAAAAACAG
complement(31594..32025)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; M482_4281; phage(gi557307613)     5.63e-91            MHELEALLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERCENVILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLYEDITNIGVY
complement(32025..33173)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; M482_4282; phage(gi557307612)     0.0                 MIKQMRQQGAYIIDIATQVGCSERTVRRYLKYPEPPARKTRHKMVKLKPFMDYIDMRLAENVWNSEVILAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRTVRVETQPGYQLQHDWGEVELEVAGQRCKVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLAEHYDFLPRACRPRRARTKGKVERMVKYLKDNVFVRYRRFDSFTHVNQQLEQWMADVADKRELRQFRQTPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRSYSNEQQVASHRLCSASSGWQTVPEHHAPLWQQVSMVEHRPLSAYEELL
33238..33366                       hypothetical protein; M482_4283                                                      N/A                 MLGGADNTNGELPSYITGANTVKGFMLIISACTGFITSVAWA
33459..33944                       PROPHAGE_Xantho_33913: IS1477 transposase; M482_4284; phage(gi77747809)              2.37e-61            MDALATGRRIKCLTCVDDYTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSDVSHARKTISEWRQDYNECRPHSTLNYQTPSEFAAAWRKGNSDSEGSDITK
complement(34007..34399)           yopE regulator; M482_4285                                                            N/A                 MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFS
34668..35252                       outer membrane virulence protein yopE; M482_4286                                     N/A                 MSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM
complement(35392..35691)           plasmid stabilization system family protein; M482_4287                               N/A                 MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAKNPELGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHE
complement(35684..35926)           hypothetical protein; M482_4288                                                      N/A                 MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKDTSV
36402..36413                       attR                                                                                 N/A                 AAAAAAAAACAG
complement(36774..36932)           hypothetical protein; M482_4289                                                      N/A                 MVPITNVGIGYPGGTVVPITNVGIGYPSGTVVPITNTGIEHPSGNVIRIESD
complement(37100..38065)           PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; M482_4290; phage(gi33770536)     8.25e-120           MMKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSL
complement(38062..39228)           PHAGE_Yersin_PY54_NC_005069: plasmid partition protein SopA; M482_4291; phage(gi33770537)     0.0                 MDLKSTLDRCIERGQFMTQEIAKSQFGNDSPAARTITRRWRITEAAELVGVTPQTIRNYEDSGKLPPPDTAMIGRVEQRTGYSIQQINDMRDVFKTRLSKPKGENPVVLAIAAHKGGAYKTSTSVHIAQWMALQGLRVLLIDATDPQATASLYHGYVPDLHIHEEDTLLPYYLGQRDDAAYAIKPTCWPNLEVIPSCLAVHRIESEIYGLHDQGKLPVAPHLLLRAAIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMSNIDLNGFEPDVRVLITKFSNAIGSQSQWMDDQIRNAWGGMVLKEVVRVTDEVGKGQVRMRTVFEQAANQRSTPAAWRNAVSIWEPVCAEIFNRLVKPRWENA
complement(40028..40222)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M482_4292; phage(gi41057343)     6.21e-14            MQSMSRRGNCLDNSPMERVFRSLKSEWLLVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
complement(40334..40792)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M482_4293; phage(gi41057343)     6.60e-32            MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVCRA
complement(40816..41133)           PHAGE_Bacter_Diva_NC_028788: transposase; M482_4294; phage(gi971743573)              2.88e-09            MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
41187..41205                       attR                                                                                 N/A                 GTATTACTGATCCACTACA
46581..46592                       attR                                                                                 N/A                 CCTTCCCGCACT
48493..48507                       attR                                                                                 N/A                 TTTTATTATCGAGTT
