gi|00000000|ref|CP006757.1|  Yersinia pestis 1522 plasmid pCD, complete sequence. 71507, gc%: 44.89%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(702..1316)              PROPHAGE_Xantho_33913: IS1477 transposase; M481_4249; phage(gi77747809)              2.26e-74            MYRLYHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALATGRRIKCLTCVDDYTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSDVSHARKTISEWRQDYNECRPHSTLNYQTPSEFAAAWRKGNSDSEGSDITK
1473..2621                         PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; M481_4250; phage(gi557307612)     0.0                 MIKQMRQQGAYIIDIATQVGCSERTVRRYLKYPEPPARKTRHKMVKLKPFMDYIDMRLAENVWNSEVILAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRTVRVETQPGYQLQHDWGEVELEVAGQRCKVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLAEHYDFLPRACRPRRARTKGKVERMVKYLKDNVFVRYRRFDSFTHVNQQLEQWMADVADKRELRQFRQTPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRSYSNEQQVASHRLCSASSGWQTVPEHHAPLWQQVSMVEHRPLSAYEELL
2621..3052                         PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; M481_4251; phage(gi557307613)     5.63e-91            MHELEALLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERCENVILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLYEDITNIGVY
3351..3363                         attL                                                                                 N/A                 AAATAAAAAAATT
3396..3821                         tir chaperone family protein; M481_4252                                              N/A                 MRTYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEPTMKKEEDDHRPSSSHLLV
complement(3969..4721)             PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; M481_4253; phage(gi17546158)     8.90e-103           MQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFNGRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFHPHSSLNNLTPAEFARSHQKGPDL
complement(4802..5068)             PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; M481_4254; phage(gi17546157)     4.67e-46            MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKF
complement(5168..5497)             hypothetical protein; M481_4255                                                      N/A                 MLTFFAKYYFDLFFNKEKNRKEKEITTRLEKRISKLEKENISLRDDLIKCKLEHIDEVMRIERSLNTQLKTNYKNNNNENLWAGIDDIIKTIECVSIESKIGGVKTNLK
complement(5636..6100)             hypothetical protein; M481_4256                                                      N/A                 MNLQNNLYSILEKVESLKNIKMLDKNNGEFTYIEGDYYFSDLTTDSLNIYEIKYLFTFENFDFFSNGKPNEVSVYKATNSFNSVCLGIKASLNSLDVERKELTVQFTYSMVFDASKGIPNFSNELETSMGLLRIAPKKLSNSFKDKGIEHNYVN
complement(6119..6670)             PHAGE_Salisa_1_NC_017983: hypothetical protein; M481_4257; phage(gi388570712)        1.10e-31            MRLFGYARVSTSQQSLDIQIKTLKDAGVKANRIFTDKASGSSADREGLDLLRMKVEEGDVILVKKLDRLGRDTVDMIQLIKEFDAQGVSIQFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGREEAKLKGVKFGRKRRINRKELLELHEQGMGATEIAKKMNIARSTIYKVINESQ
6834..9149                         PROPHAGE_Xantho_33913: Tn5041 transposase; M481_4259; phage(gi21231545)              1.28e-33            MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRRGKHNRLGIALQLTTARFLGTFITDLTQVLPGVQHFVAVQLNIRRPEVLSRYAERDTTRREHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKILLPGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKRLLDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRRRDIWLKNSDRWGDLREKLLQGEEWQAQRVLVCRALGHPTDGHKGVQQLAVQLDETWRAVASRFEGNTEVHICNDGKYPSLTISSLEKLEEPLSLLRLNNRVRQLLPPVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVLMAEACNIGLEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRWGGGEVASVDGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTGGTSDIIFGLFWLLGYQFSPRLADAGEAVFWRVDKSANYGALDELARGCADLSKAENQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMAVGRVNKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSWMRSNGEETRDEDIARLSPLMHGHINMLGHYTFTLSDDILNGELRALNFNLNNELSP
complement(9146..9526)             PROPHAGE_Xantho_33913: ISxcC1 transposase; M481_4258; phage(gi21231060)              1.81e-38            MVERYPRDGFFKVFQILRRWGYVWNHKRVHRIYCLLKLNIRRKGKQRLPARTPSPLAVPERLNLSGAVDFMHDALICVDDYNREKLAIEIDLNLPTQHVIRVLDRIVVNRGYPVMGFEVQWDENVR
9704..9716                         attR                                                                                 N/A                 AAATAAAAAAATT
10132..10383                       adhesin yadA; M481_4260                                                              N/A                 MTKDFKISVSAALISALFSSPYAFAEEPEDGSDGIPRLSAVQISPNVDPKLGVGLYPAKPILRQENPKLPPRGPQGPEKKELD
10426..10554                       hypothetical protein; M481_4261                                                      N/A                 MLALRIPIALRLVLLLKQQNQQQLLWALVQWQQALILLQLVL
10500..11435                       PHAGE_Salmon_SP_076_NC_021782: agglutinating adhesin; M481_4262; phage(gi525972748)     4.76e-08            MGSGSMATGVDSVAIGPLSKALGDSAVTYGVSSTAQKDGVAIGAKASASDTGVAVGFNSKVDAQNSVAIGHSSHVAADHGYSIAIGDHSKTDRENSVSIGHESLNRQLTHLAAGTEDTDAVNVAQLKKEMAETLENARKETLAQSNDVLDAAKKHSNSVARTTLETAEEHANKKSAETLVSAKVYADSNSSQTLKTANSYTDVTVSNSTKKATRESNQYTDHKFSQLDNRLDKLDKRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVAFKAGVAYAGSSNVMYNASFNIEW
complement(11761..11907)           PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; M481_4263; phage(gi41057344)            3.12e-06            MTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
12321..12557                       hypothetical protein; M481_4264                                                      N/A                 MANSLWEVAGFTEDGAVRFRQGDQEKIVDPQKATEDRHIDLAYTLTAYGVQGASERFVIALFGAEGGRKRMATLHLFT
12729..13046                       PHAGE_Bacter_Diva_NC_028788: transposase; M481_4265; phage(gi971743573)              2.88e-09            MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
13070..13477                       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M481_4267; phage(gi41057343)     4.14e-25            MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSFHW
complement(13349..13750)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M481_4266; phage(gi41057343)     7.25e-23            MDIHIAPYRQPFTFQASVYSRRIVGSAISSSPDAELVCRAWRNALETRPREKRLLFHSDQGGQYRSKKYRQLLWRNGVMQSMSRRGNCLDNSPMERVKVNHQCQVAPATIDFDIADISTPHTIGLRRLKLPFQ
13849..13892                       attL                                                                                 N/A                 GGAAAAAGGCTACGAAGGTGTCCTGATTTTGTGATCCACTACAG
14280..14534                       replication regulatory RepB family protein; M481_4268                                N/A                 MSQIENAVTSSSKRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLCEDSGLTQTEMIERWIQREKAARTNAA
14843..15709                       incFII family plasmid replication initiator RepA; M481_4269                          N/A                 MTNHQALFTHHYRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLANRIQRSITNLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVAAARRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEGRFVGNLDAVRREKARRVKERMLMSRNNNYTRLATGAT
16692..16841                       hypothetical protein; M481_4270                                                      N/A                 MQLSDYIDSVYGTAVSERRSHIVNSLPLSHSGLSQYNEPEVKYDDTVFS
17293..17571                       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M481_4271; phage(gi41057343)     6.44e-26            MKRLLFHSDQGGQYRSKKSRQLLWRTGVMQSMSRRGNCLDNSPMERVFRSLKSEWLPVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
17586..17629                       attR                                                                                 N/A                 GGAAAAAGGCTACGAAGGTGTCCTGATTTTGTGATCCACTACAG
