gi|00000000|ref|CP006761.1|  Yersinia pestis 1413 plasmid pCD, complete sequence. 71523, gc%: 44.89%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
28026..28040                       attL                                                                                 N/A                 TAAAAAATATTTTTT
complement(33870..34064)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M480_4283; phage(gi41057343)     7.66e-15            MQSMSRRGNCLDNSPMERVFRNLKSEWLPVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
34085..34145                       attL                                                                                 N/A                 ACTGCCTGGATTTCTTACTCCTGTACTGCCCTCCCTGATCCGAATGAAACAGCAGCCTCTT
complement(34099..34326)           hypothetical protein; M480_4284                                                      N/A                 MLTPQHIWLAREPVDMRRGIAIHYRPSASALARRSRLCLLQQRRVRVSKFCVGTNTGSGCEEAAVSFGSGRAVQE
complement(34320..34559)           hypothetical protein; M480_4285                                                      N/A                 MSKKHYCRLHDLNIATFYYWLKHHQDDTTVAIPPAFIPARRVIPDNNGTEAVTLNLPNGCSVSCLPAQLRAVMQALSLC
complement(35732..36598)           incFII family plasmid replication initiator RepA; M480_4286                          N/A                 MTNHQALFTHHYRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLANRIQRSITNLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVAAARRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEGRFVGNLDAVRREKARRVKERMLMSRNNNYTRLATGAT
complement(36907..37161)           replication regulatory RepB family protein; M480_4287                                N/A                 MSQIENAVTSSSKRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLCEDSGLTQTEMIERWIQREKAARTNAA
37799..38092                       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M480_4289; phage(gi41057343)     7.83e-17            MCRAWRNALETRPREKRLLFHSDQGGQYRSKKYRQLLWRNGVMQSMSRRGNCLDNSPMERVKVNHQCQVAPATIDFDIADISTPHTIGLRRLKLPFQ
complement(37964..38371)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M480_4288; phage(gi41057343)     4.14e-25            MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSFHW
complement(38395..38712)           PHAGE_Bacter_Diva_NC_028788: transposase; M480_4290; phage(gi971743573)              2.88e-09            MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
complement(38884..39120)           hypothetical protein; M480_4291                                                      N/A                 MANSLWEVAGFTEDGAVRFRQGDQEKIVDPQKATEDRHIDLAYTLTAYGVQGASERFVIALFGAEGGRKRMATLHLFT
39534..39680                       PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; M480_4292; phage(gi41057344)            3.12e-06            MTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
complement(40006..40941)           PHAGE_Salmon_SP_076_NC_021782: agglutinating adhesin; M480_4293; phage(gi525972748)     4.76e-08            MGSGSMATGVDSVAIGPLSKALGDSAVTYGVSSTAQKDGVAIGAKASASDTGVAVGFNSKVDAQNSVAIGHSSHVAADHGYSIAIGDHSKTDRENSVSIGHESLNRQLTHLAAGTEDTDAVNVAQLKKEMAETLENARKETLAQSNDVLDAAKKHSNSVARTTLETAEEHANKKSAETLVSAKVYADSNSSQTLKTANSYTDVTVSNSTKKATRESNQYTDHKFSQLDNRLDKLDKRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVAFKAGVAYAGSSNVMYNASFNIEW
complement(40887..41015)           hypothetical protein; M480_4294                                                      N/A                 MLALRIPIALRLVLLLKQQNQQQLLWALVQWQQALILLQLVL
complement(41058..41309)           adhesin yadA; M480_4295                                                              N/A                 MTKDFKISVSAALISALFSSPYAFAEEPEDGSDGIPRLSAVQISPNVDPKLGVGLYPAKPILRQENPKLPPRGPQGPEKKELD
41725..41737                       attL                                                                                 N/A                 AATTTTTTTATTT
41915..42295                       PROPHAGE_Xantho_33913: ISxcC1 transposase; M480_4297; phage(gi21231060)              1.81e-38            MVERYPRDGFFKVFQILRRWGYVWNHKRVHRIYCLLKLNIRRKGKQRLPARTPSPLAVPERLNLSGAVDFMHDALICVDDYNREKLAIEIDLNLPTQHVIRVLDRIVVNRGYPVMGFEVQWDENVR
complement(42292..44607)           PROPHAGE_Xantho_33913: Tn5041 transposase; M480_4296; phage(gi21231545)              1.28e-33            MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRRGKHNRLGIALQLTTARFLGTFITDLTQVLPGVQHFVAVQLNIRRPEVLSRYAERDTTRREHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKILLPGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKRLLDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRRRDIWLKNSDRWGDLREKLLQGEEWQAQRVLVCRALGHPTDGHKGVQQLAVQLDETWRAVASRFEGNTEVHICNDGKYPSLTISSLEKLEEPLSLLRLNNRVRQLLPPVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVLMAEACNIGLEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRWGGGEVASVDGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTGGTSDIIFGLFWLLGYQFSPRLADAGEAVFWRVDKSANYGALDELARGCADLSKAENQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMAVGRVNKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSWMRSNGEETRDEDIARLSPLMHGHINMLGHYTFTLSDDILNGELRALNFNLNNELSP
44771..45322                       PHAGE_Salisa_1_NC_017983: hypothetical protein; M480_4298; phage(gi388570712)        1.10e-31            MRLFGYARVSTSQQSLDIQIKTLKDAGVKANRIFTDKASGSSADREGLDLLRMKVEEGDVILVKKLDRLGRDTVDMIQLIKEFDAQGVSIQFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGREEAKLKGVKFGRKRRINRKELLELHEQGMGATEIAKKMNIARSTIYKVINESQ
45341..45805                       hypothetical protein; M480_4299                                                      N/A                 MNLQNNLYSILEKVESLKNIKMLDKNNGEFTYIEGDYYFSDLTTDSLNIYEIKYLFTFENFDFFSNGKPNEVSVYKATNSFNSVCLGIKASLNSLDVERKELTVQFTYSMVFDASKGIPNFSNELETSMGLLRIAPKKLSNSFKDKGIEHNYVN
45944..46273                       hypothetical protein; M480_4300                                                      N/A                 MLTFFAKYYFDLFFNKEKNRKEKEITTRLEKRISKLEKENISLRDDLIKCKLEHIDEVMRIERSLNTQLKTNYKNNNNENLWAGIDDIIKTIECVSIESKIGGVKTNLK
46373..46639                       PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; M480_4301; phage(gi17546157)     4.67e-46            MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKF
46720..47472                       PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; M480_4302; phage(gi17546158)     8.90e-103           MQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFNGRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFHPHSSLNNLTPAEFARSHQKGPDL
complement(47620..48045)           tir chaperone family protein; M480_4303                                              N/A                 MRTYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEPTMKKEEDDHRPSSSHLLV
48078..48090                       attR                                                                                 N/A                 AATTTTTTTATTT
48265..48276                       attL                                                                                 N/A                 AAAAAAAAACAG
complement(48389..48820)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; M480_4304; phage(gi557307613)     5.63e-91            MHELEALLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERCENVILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLYEDITNIGVY
complement(48820..49968)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; M480_4305; phage(gi557307612)     0.0                 MIKQMRQQGAYIIDIATQVGCSERTVRRYLKYPEPPARKTRHKMVKLKPFMDYIDMRLAENVWNSEVILAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRTVRVETQPGYQLQHDWGEVELEVAGQRCKVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLAEHYDFLPRACRPRRARTKGKVERMVKYLKDNVFVRYRRFDSFTHVNQQLEQWMADVADKRELRQFRQTPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRSYSNEQQVASHRLCSASSGWQTVPEHHAPLWQQVSMVEHRPLSAYEELL
50125..50739                       PROPHAGE_Xantho_33913: IS1477 transposase; M480_4306; phage(gi77747809)              2.26e-74            MYRLYHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALATGRRIKCLTCVDDYTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSDVSHARKTISEWRQDYNECRPHSTLNYQTPSEFAAAWRKGNSDSEGSDITK
complement(50802..51194)           yopE regulator; M480_4307                                                            N/A                 MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFS
51583..52047                       outer membrane virulence protein yopE; M480_4308                                     N/A                 MAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM
complement(52187..52486)           plasmid stabilization system family protein; M480_4309                               N/A                 MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAKNPELGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHE
complement(52479..52721)           hypothetical protein; M480_4310                                                      N/A                 MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKDTSV
53197..53208                       attR                                                                                 N/A                 AAAAAAAAACAG
complement(53569..53772)           hypothetical protein; M480_4311                                                      N/A                 MAPITNVSIGYPGGTVVPITNVGIGYPGGTVVPITNVGIGYPSGTVVPITNTGIEHPSGNVIRIESD
complement(53895..54860)           PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; M480_4312; phage(gi33770536)     8.25e-120           MMKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSL
complement(54857..56023)           PHAGE_Yersin_PY54_NC_005069: plasmid partition protein SopA; M480_4313; phage(gi33770537)     0.0                 MDLKSTLDRCIERGQFMTQEIAKSQFGNDSPAARTITRRWRITEAAELVGVTPQTIRNYEDSGKLPPPDTAMIGRVEQRTGYSIQQINDMRDVFKTRLSKPKGENPVVLAIAAHKGGAYKTSTSVHIAQWMALQGLRVLLIDATDPQATASLYHGYVPDLHIHEEDTLLPYYLGQRDDAAYAIKPTCWPNLEVIPSCLAVHRIESEIYGLHDQGKLPVAPHLLLRAAIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMSNIDLNGFEPDVRVLITKFSNAIGSQSQWMDDQIRNAWGGMVLKEVVRVTDEVGKGQVRMRTVFEQAANQRSTPAAWRNAVSIWEPVCAEIFNRLVKPRWENA
complement(56823..57017)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M480_4314; phage(gi41057343)     6.21e-14            MQSMSRRGNCLDNSPMERVFRSLKSEWLLVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
57038..57098                       attR                                                                                 N/A                 ACTGCCTGGATTTCTTACTCCTGTACTGCCCTCCCTGATCCGAATGAAACAGCAGCCTCTT
complement(57129..57587)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; M480_4315; phage(gi41057343)     6.60e-32            MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVCRA
complement(57611..57928)           PHAGE_Bacter_Diva_NC_028788: transposase; M480_4316; phage(gi971743573)              2.88e-09            MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
62899..62913                       attR                                                                                 N/A                 TAAAAAATATTTTTT
