gi|00000000|ref|CP007038.1|  Shigella flexneri G1663 plasmid pG1663, complete sequence. 222586, gc%: 45.86%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
22520..23104                       PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; SF2A_24190; phage(gi557307549)             2.26e-58            MSKLILPSNTVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRLTAQLACDALQMALWRRKRPRNVIVHSDRGSQYCSADYQALLKWHNLRGSMSAKGCCYDNACVESFFHSLKVECLHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA
complement(23571..23834)           hypothetical protein; SF2A_24195                                                     N/A                 MWITIAPFVTVLLRLAANEAPLPIKFTDKGNISVSDWRRCYPPGRELFNVRMTVLMPIFSVRPVSRTPAPLKAISVIWFLTPGLRAS
complement(24296..24394)           hypothetical protein; SF2A_24200                                                     N/A                 MAGLQRVITHIVSEFDVQHSAVSGNSNEHVKR
complement(24594..25787)           PHAGE_Shigel_SfII_NC_021857: transposase; SF2A_24205; phage(gi526244660)             0.0                 MPVHKVCQNFFRDALAPFHQYRQNALMDATMALINGASLTQTSIGRFLPGNAQVKNKIKRIDRLMGNEALHRDIPMIFRNITSMLTRQLSLCVIAVDWSGYPSQEHHVLRASLLCDGRSIPLLSKVVPSEKQNNPLIQHDFLDSLAQSLPPDARVIIVTDAGFQSAWFHHITSLGWDFIGRIRNNVQYCLDNAPERWLKVSDSPECKTPEYMGAGRLVKERKKSIRGHFYTYKKSAKGRKKKRSKGQSGLNKTDKEQSKSAKEAWLIFSSTNDFRAREIIKLYSRRMQIEQNFRDEKNGRFGFGLRASKSRSTGRILVLSLLATLSTIVMWLLGYHAENKGLHLKYQANSIKSRRVISYLTLAKNVLRHSPLILRRTVLSTVLNHLSRTYRNMVLVY
25906..26223                       PROPHAGE_Escher_CFT073: transposase; SF2A_24210; phage(gi26248360)                   3.08e-68            MVQYTRNSFYIPLMTRLRPMGSTVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHPGENLVSFDNPPQHHPLSIYDSFCRGVA
26223..27002                       PROPHAGE_Escher_CFT073: transposase/IS protein; SF2A_24215; phage(gi26248359)        0.0                 MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRVGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLGRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
27018..27407                       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SF2A_24220; phage(gi557307573)       2.03e-23            MGRWWRYKWITFHPSLTQHWLWYAYNTKTGGVLAYTFGPRNDETCRELLALLTPFCIGMVTSDDWGSYAREVPKEKHLTGKIFTQRIARNNRTLRTRIKRLARKTICFSRSVEIHEKVIGSFIEKHMFY
27729..28928                       PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; SF2A_24225; phage(gi100009)       0.0                 MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKSAVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYRDRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMFLNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDTLCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPPAQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIFGGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRIEFIRANY
28928..29908                       PHAGE_Entero_P1_NC_005856: ParB; SF2A_24230; phage(gi46401681)                       6.95e-128           MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTEIKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEILDGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEAGMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRLGDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTLLWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL
30164..30649                       PROPHAGE_Shewan_MR-1: IS110 family transposase; SF2A_24235; phage(gi24375433)        6.88e-29            MSEQKITGIDLAKTNFYLFSINAHGKPAGKTKLSRNQLLNWLVQQPKMTVAMEAGGASHYWAREIRKLDHDVILLPAQHVKAYQRCQKNDYNDAQAIAEACQHGTIRPVPIKTLEQQDVQTFLNMRRLVSMERTQLINHIRGLLAEYGIVFSKGAAELRQK
complement(30676..30822)           PHAGE_Stx2_c_1717_NC_011357: transposase; SF2A_24240; phage(gi209447153)             1.75e-14            MLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSSQ
complement(30938..32155)           PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; SF2A_24245; phage(gi100001)       7.53e-33            MKYQKHWSGHHIWMCVATREPPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPVLEKRIPKSNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDALKQCAIRCWRYSWILEVDISAFFDHVRHDLVLKALEHHGMPKWVILYCRRWMEAPMQSCENGELITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRMSDATRLKNRLSERFSEVGLVLNAGKTNIAYIDTFKRRNVATSFTFLGYDFKVRTLKNFKGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNAIVRGWIEYYGKFWSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLTLVRKEYPKLFVHWYLLRASNE
complement(32632..32769)           PHAGE_Stx2_c_1717_NC_011357: transposase; SF2A_24250; phage(gi209447153)             1.39e-12            MLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSEIAA
complement(32857..33375)           PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; SF2A_24255; phage(gi157166067)     7.21e-122           MAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
complement(33387..33740)           PROPHAGE_Escher_CFT073: transposase; SF2A_24260; phage(gi26249430)                   7.75e-45            MPLLDKLREQYGGGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
complement(33740..34066)           PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; SF2A_24265; phage(gi157166066)     1.55e-72            MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
complement(34072..34422)           PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; SF2A_24270; phage(gi557307549)             6.80e-13            MVQRLMGILSLKAAIKVKRYRSYRGEVGQTAPYVLQRDFKATRPNEKWVTDFTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNEPPRESWRLNFLRKR
34535..34723                       transposase IS1294; SF2A_24275                                                       N/A                 MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASILERRGDTAALTRLQDTGG
complement(36337..36858)           PROPHAGE_Escher_MG1655: IS150 transposase A; SF2A_24290; phage(gi16131428)           1.24e-123           MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLVYLKKLKALAHPTKK
36959..37279                       PROPHAGE_Escher_CFT073: transposase/IS protein; SF2A_24295; phage(gi26248359)        5.62e-58            MDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAFKIFYDISKISLELYHNIH
39021..39287                       hypothetical protein; SF2A_24300                                                     N/A                 MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAAIYELQIPAANRTKTLKFTATEMQWLTKINEAGIDEKQSQRYSDF
39525..39752                       PHAGE_Entero_P1_NC_005856: InsA; SF2A_24305; phage(gi46401643)                       9.58e-49            MVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
39779..40174                       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SF2A_24310; phage(gi557307573)       5.16e-85            MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

#### region 2 ####
153344..153423                     attL                                                                                 N/A                 CGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGC
163615..164298                     PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; SF2A_25055; phage(gi100063)      8.26e-29            MSRFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKGRPRLPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAANDDWFMPEAA
164299..164520                     PHAGE_Entero_N15_NC_001901: gp50; SF2A_25060; phage(gi9630517)                       1.14e-07            MNYAGHEKLRAEVAEVANAMCDLRTTMNEMERRYSFNADTLPERLVRQTLFRANRLLMEAYTEILELDSCFKD
164517..164717                     hypothetical protein; SF2A_25065                                                     N/A                 MRGESMYGTCETLCRALAAKYSGDTPLMLVIWSPEEIQALADGMDISLSDHEIRTVLAHLEDIPED
164751..164966                     hypothetical protein; SF2A_25070                                                     N/A                 MEIISNVRENRQVTVPAELLETLTQIAEQALWKREWAARDHGFPLPEYVTRRQAMVDQARSLLKNNTHEND
165011..165781                     hypothetical protein; SF2A_25075                                                     N/A                 MNETLNALICRHARNLLLAQGWPEETDVDQCNPNYPGWISIYVRLDAPRLATLLVNRHDGVLPPHLASAIQKLTGTGAELVLSGSQWQSLPVLPADGTQVSFPYAGEWLTEDEIRAVLDAVRDAVCSVSCRGAEDARRIRAALTTSGQTLLTRQTRRFRLVVKESDHPCWLDEDDENLPVVLDAILNRGARFSAVEMYLVSDCIEHILSSGLACDVLRIPDEPPRRWFDRGVLREVVREARAEIRSMADALAKIRK
complement(166848..168449)         PHAGE_Stx2_c_1717_NC_011357: transposase; SF2A_25085; phage(gi209447153)             0.0                 MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIHPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKTHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(168469..168816)         PHAGE_Stx2_c_1717_NC_011357: transposase; SF2A_25090; phage(gi209447152)             1.54e-53            MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWPHPKRTERPGIRI
complement(168813..169487)         PHAGE_Stx2_c_1717_NC_011357: truncated transposase; SF2A_25095; phage(gi209447151)     2.25e-09            MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
170585..170953                     hypothetical protein; SF2A_25100                                                     N/A                 MTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC
171041..171226                     PROPHAGE_Escher_CFT073: transposase insC; SF2A_25105; phage(gi26250372)              6.44e-14            MSNTSSNFEMTGTLLGLELRKRKTPQEKIAIIQQTMEPGMTVSHVARLHGIQPSLLLKWKK
171425..171790                     PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; SF2A_25110; phage(gi17546153)     8.44e-59            MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
171748..172599                     PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SF2A_25115; phage(gi24114950)     1.41e-176           MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTVSAPSATSCENCPVWQQSRPSILMDTNDEFPDNKRYSLLPFLFA
172547..173221                     PHAGE_Stx2_c_1717_NC_011357: truncated transposase; SF2A_25120; phage(gi209447151)     1.97e-09            MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
173218..173565                     PHAGE_Stx2_c_1717_NC_011357: transposase; SF2A_25125; phage(gi209447152)             1.54e-53            MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWPHPKRTERPGIRI
173585..175186                     PHAGE_Stx2_c_1717_NC_011357: transposase; SF2A_25130; phage(gi209447153)             0.0                 MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKTHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
175375..175608                     PROPHAGE_Escher_CFT073: transposase/IS protein; SF2A_25135; phage(gi26248359)        9.41e-40            MLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLQGTSDITNPRVGICV
complement(175660..175800)         N-acetylmuramoyl-L-alanine amidase; SF2A_25140                                       N/A                 METDDGYKALVRAFQLHFRQKNYDGIMDAETAAILYALLEKYFPGK
complement(175919..176044)         sugar phosphate transporter; SF2A_25145                                              N/A                 MGLVVDYLGWGATFIVLILSAVFAIIFTLMSRERSLEFEKE
176622..176906                     CopG family transcripitonal regulator; SF2A_25150                                    N/A                 MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQSWADSLSTDHLLPVPR
176906..177181                     plasmid stabilization protein; SF2A_25155                                            N/A                 MELKWTSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFTGEYEIRYELTGQTIYVLRLWHTRENR
complement(177407..177802)         PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SF2A_25160; phage(gi557307573)       3.37e-85            MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(177829..178056)         PHAGE_Entero_P1_NC_005856: InsA; SF2A_25165; phage(gi46401643)                       9.58e-49            MVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
186203..186282                     attR                                                                                 N/A                 CGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGC
