gi|00000000|ref|CP007361.2|  Salmonella enterica subsp. enterica serovar Enteritidis str. 4685835, gc%: 51.74%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1011983..1013185)       PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; AU60_32855; phage(gi100242)     1.40e-49            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLQEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTNDNGKLNIRLTGPWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTALTANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQAHEWFQAHQQISPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASRYQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQVRKAS
1013331..1013345                   attL                                                                                 N/A                 TTATAAAAATGTAGC
complement(1013380..1013790)       PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; AU60_32860; phage(gi169257271)     1.46e-44            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MENTNIVTTEQQAPNTISASNAIFNVQALGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
1013811..1014440                   hypothetical protein; AU60_06475                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MYGVQGTPDCYRIELKNVYGVQENLISYRQASLGAWVAIAGGGDPYEVAYAIYKAVPDISVLTNDVVNPSGAAVDKKTIPIIVYPDTYHVPFVVPSSQNVTLLITWNTASTSYIDPTGIEKAVQQSIADYINGIATGEPINIFLIRDIFLNQVKGLVSSNLVSMIDIQVGINGKIVPPATDSSLVYGDTYAYFSTSSSQIQVKQYGSSS
1014424..1015050                   hypothetical protein; AU60_06480                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MAALLESIIPAYPYTQYNDDPDIVAFFDAYNKLAQGYLDYFNNLNLPCWTSPAITGELLDWIAAGIYGESRPLLQISEDAIARGAYNTIEYNNVAYAKLRNYVPGSASYVPDDYFKRILTWNFYKGDGSHFCINWFKRRLARFIHGANGIDPPVQSTFDISVMPDKGIFFVSIPDYGDGVGHFLKDAIDQSLVKLPFIYTYSVTVVEQ
1015047..1016756                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; AU60_06485; phage(gi169257320)     0.0                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MIIGFGNNVVSSLAADITASQTTIQVMPGVGAMFANLLTSDYANSSNPLKTYAKITLTDAKETVFEVCHLTAVNNDMLTVIRGQEGTTAKGWSLNDVIANFATRGSENQFVQIEELQSGHYVAGVAGGTENNLTLELPATYFVNGGVDWTLRTPLVVIPALNNTGASTLQLTMGGRVLGIFPLYKGNKAELSANDIIKDIPVLCVLDNTKTYFSVLNPLEIYLGSRYLQKDQNLSDVPDKAKGRSSLEVYSKTESDENYMAKSQCGADIPNKPLFVQNIGALPASGTAVAANRLASRGALPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGYALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTARAQVTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA
1016756..1017337                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; AU60_06490; phage(gi169257321)     8.40e-143           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MTFKMSEQAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETQTWSLHEDHRGEMVYDTTTGNQVYISAPGPLPENVTSVSPGGEYQKWDGKAKVWVKDEAAEKAAQLRQAEETKSRLLQMASEKIAPLQDAVDLGIATDDEKARLDEWKKYRVLVNRMDTAAPDWPERPASQ
1017815..1018783                   PHAGE_Phage_Gifsy_2_NC_010393: prophage virulence determinant; secreted effector protein; AU60_06500; phage(gi169257322)     0.0                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MPFHIGSGCLPAIISNRRIYRIAWSDTPPEMSSWEKMKEFFCSTHQTEALECIWTICHPPAGTTREDVVSRFELLRTLAYDGWEENIHSGLHGENYFCILDEDSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGVERTDITYNLTSDIDAAAYLEELKQNPIINNKIMNPVGQCESLMTPVSNFMNEKGFDNIRYRGIFIWDKPTEEIPTNHFAVVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDFSNSSIAANAYDALPRELESESMAGKVFVTSPRWFNTFKKQKYSLIGKM
1019051..1019299                   PHAGE_Stx2_c_1717_NC_011357: transposase; AU60_06510; phage(gi209447153)             2.73e-30            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MEIDNNICENALRCVALGRRNYLFFGSDRSGEAAAIIYSLLGTCKLNGVESEAWLRDVLWKISDWSSNRVHELLPWNLETVK
complement(1019431..1020057)       PHAGE_Pseudo_F116_NC_006552: hypothetical protein; AU60_32865; phage(gi56692976)     3.72e-36            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MCGRFAQAQTREEYLAYLADEADRNIAYDPQPIGRYNVAPGTKVLLLSERDEQLHLDPVIWGYAPGWWDKAPLINARVATAASSRMFKPLWQHGRAICFADRWFEWKKEGDKKQPYFIHRKDGKPIFMAAIGSTPFERGDEAEGFLIVTSAADKGLVDIHDRRPLALTPETARVWMRQFLEPHSKSITYRVIPALTRPMMRKDTNPCQ
complement(1020241..1020420)       hypothetical protein; AU60_06520                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MIVNLYQDNYSGYRQHGGSGVGGSNPLVPTKIPLKNQPVRAVFFMAQFPTGKLWGETGE
complement(1020417..1021103)       virulence protein; AU60_06525                                                        N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MLRHIQNSLGSVYRSNTATPQGQIIHHRNFQSQFDTTGNTLYNNCWVCSLNVIKSRDGNNYSALEDITSDNQAFNNILEGIDIIECENLLKEMNVQKIPESSLFTNIKEALQAEVFNSTVEDDFESFISYELQNHGPLMLIRPSLGSECLHAECIVGYDSEVKKVLIYDSMNTSPEWQSNIDVYDKLTLAFNDKYKNEDCSICGLYYDGVYEPKPLHSSSWKDWCTIL
complement(1021374..1021565)       PHAGE_Entero_mEp390_NC_019721: DinI-like family protein; AU60_06530; phage(gi428782688)     5.87e-34            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MFVELVYDKRNVEGLEGASEIILAELTKQVHQIFPDAEVRVKPMQANCLNSDTNKSDRENLNR
1021871..1021885                   attR                                                                                 N/A                 TTATAAAAATGTAGC

#### region 2 ####
1226352..1226363                   attL                                                                                 N/A                 CTTATGATCAAT
1226389..1226425                   attL                                                                                 N/A                 CGAATTTCTGTATTCCGGTCTTTTTGGTTATATCACA
complement(1226470..1227549)       PHAGE_Entero_HK022_NC_002166: integrase; AU60_33405; phage(gi9634144)                2.82e-93            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MSRKKYDANLPRNLTYRKASKSFFWRNPLTDKEFPLGQIARRDAITQAIEANNFIAQNHTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRGNQLATVREKMGEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDKAYMML
complement(1227524..1227802)       excisionase; AU60_08045                                                              N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MTMSFVRLETWGELNYPDDPPPLTTLRRWARNGNIYPTPVLHGRTYRVDPDAFYIKPNKVGLVLEQHHPNGRTGKPSALLEKLISESKKVRC
1228216..1230195                   hypothetical protein; AU60_08050                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MRLKLIVKSFALAGLLSSTALTPLFAQEAPKGATASTKQANDALYNQLPFSDNTDFTNAHKGFIAGLPEEVIKGEQGNVIWNPQQYAFIKEGEKSPDTVNPSLWRQSQLINISGLFEVTDGVYQIRNLDLSNMTIIEGKEGITVVDPLVSAETAKAGMDLYFKNRGNKPVVAIIYTHSHVDHYGGVRGVVDEADVKSGKVKVYAPAGFMEAAVAENIMAGNVMSRRASYMYGNLLKPDASGQVGAGLGTTTSAGTVTLIAPTNIIDKDGQKEVIDGLTYDFMLAPGSEAPSEMLWFIEEKKLIEAAEDVTHTLHNTYSLRGAKIREPLPWSKYINEAIVRWGDKAEIIMAQHHWPTWGNENVVGLLKSQRDLYRYINDQTLRMANEGLTRDEIAANFKLPDSLAKTWANRGYYGSISHDVKATYVLYLGWFDGNPATLDELPPEEAAKKFVEYMGGADAILQKAKADFDQGNYRWVAQVVSKVVFADPNNQNARNLEADALEQLGYQAESGPWRNFYLTGAQELRNGVVKGPTPNTASPDTVRAMTPEMFFDFLAVHINGEKAGNARAVFNIDLGSDGGKYKLELENGVLNHTANAEAKDADATITLNRDTLNKIILKEETLKQAQDKGEVNVTGNAAKLDEMLGYMDKFEFWFNIVTP
complement(1230213..1230404)       hypothetical protein; AU60_08055                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MNHATTSYCHLMKKAVHNRIRTDWYQGHVLQQQIHKMKQDIKNEGKIEYKKRTELSEVTSLQH
1230827..1231132                   PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; AU60_08060; phage(gi423262436)     1.24e-10            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MMIINSLLYIHVENEDALKMLKFVIYGDTVKNLNKTFTCKYAVIRRDDMTVIAEMDFFPDCNRSLMYRDGRYVRFLPLLQNDIMGSDTLINELTIRAGYHE
1231196..1231795                   PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; AU60_33410; phage(gi169257286)     2.14e-70            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MAHLQLVKQTSSGLLLPATPESGDFLRSVKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWMPTGGTVTSREQKLISGFVNFLCDSAGQEYTPALNEAAEQYLHNVATLRTGDVALLKSFDAFREWVTVQAGFYTEHFYPDGSRGRRAKSIAFASMDETEFQQVYKAVLNVLWNWILFRKFSSLEEVENVAAHLLEFA
1231792..1232019                   PHAGE_Phage_Gifsy_2_NC_010393: NinG; AU60_08075; phage(gi169257288)                  3.59e-12            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKMTWFQHPVCTTEEADELVAGYRRRGVKVERYGEAEVLELESNNTPQRWTVEELKEIRIAALADLRALKKLEAA
1232149..1232838                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; AU60_33415; phage(gi169257244)     5.53e-112           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MNTQYLEYVRQQLIVATADLSGATKGQLQAWLENAQLYTKNYPRKKQRIRDEVTGKMITLNNPPIAGKQSLAKGSAIPLVQPVEYSTSSWRRALLSLEEHNKAWLLWNYSENTCWEYQVTVTRWAWEKFSQQLEGKRVAKKTLARLRQLIWLAAQDVKAELARRETYEYQTLAELMGVAKSTWTETYMSHWLVMRNSFKRLDSDALISVTRSRSQQKATNLDISLAKPN
1232935..1233459                   hypothetical protein; AU60_08090                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MFYRDLFQVFGPDPLYKEEEGIAILREQYGIEAPEQIFKQIYCGLSNNSEFQTLYGHLNLKSLKWDLVRLKTAEFTKFGRNATYPDYMLEISEDFNACGSKFCIDAREEVANHWLKFGTWAEPPMFIERSLIIPGESGLHLMEGHTRLGTLLGAIKYKFVQLADTHELYIASQK
complement(1233833..1234282)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; AU60_08095; phage(gi169257293)     1.10e-105           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAGGYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLSENSLTRTHQSNCNTRSQTHSSSTSKTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF
complement(1234643..1235329)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; GtgA; AU60_08100; phage(gi169257294)     6.16e-169           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MPTGIKPIFINNMMSTYGLSHPHDSKVFPDLPEHQDNPSQLRLQHDGLATDDKARLEPMCLAEYLISGPGGMDPDIEIDDDTYDECREVLSRILEDAYTQSGTFRRLMNYAYDQELRDVEQRWLLGAGENFGTTVTDEDLESSEGRKVIALNLDDTDDDSIPEYYESNDGPQQFDTTRSFIHEVVHALTHLQDKEDSNPRGPVVEYTNIILKEMGHTSPPRIAYEFSN
1235599..1235934                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; holin; AU60_08105; phage(gi169257295)     2.16e-75            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKMNDKTPEFWAAVLTGLKNAWPQILGALMAGLIAYGRLIYDGATRKNKWLEGVLCGALSLCVTSALDVVGLPVSISPFVGGIIGFVGVDKLREIAISALKKRAGVNDENQ
1235921..1236370                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; endolysin; lysozyme; AU60_08110; phage(gi169257296)     3.42e-106           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS
1236388..1236867                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; Lambda gpRz homolog; AU60_08115; phage(gi169257297)     6.25e-115           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDEKYTKELADAKAENDALRDDVAAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW
1237075..1237386                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, small subunit; AU60_33420; phage(gi169257298)     2.12e-70            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349VDQEIKSLELNITQLSAITGAHRQTIASRLKGVKTSGGNGSNLKIYRLVDILTAMMTMPAVTGENDPNKMKPSDRRAWFQSEMTRIELEKEMRTLIPASEVLSV
1237466..1237645                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; Lom homolog; AU60_33425; phage(gi169257312)     1.66e-35            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MIGAANGHIKDNWGNSDNKTAFAYGAGIQLNPVENIAVNASYEHTSFSTDADSDVKAGT
complement(1237762..1238295)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; superoxide dismutase precursor; AU60_33430; phage(gi169257313)     6.02e-125           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKYTILSLVAGALISCSAMAENTLTVKMNDALSSGTGENIGEITVSETPYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKPAPLGGGGARFACGVIEK
1238385..1239080                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpL homolog; AU60_08130; phage(gi169257314)     9.41e-173           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MQDIPQETLSETTKAEQSAKVDLWEFDLTAIGGERFFFCNEPNEKGEPLTWQGRQYEPYPIQVQDFEMNGKGASPRPNLVVANLFGLVTGMAEDLQSLVGASVVRHQVYSKFLDAVNFSNGNPGADPEQEAVARYNVEQLSELDSSTATIILASPAETDGSVVPGRTMLADSCPWDYRDENCGYDGPPVADEFDKPTSDPKKDKCSHCMKGCEMRNNLVNAGFFASINKLS
1239090..1239371                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpK homolog; AU60_33435; phage(gi169257315)     3.30e-58            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MINDDILAHARQCAPAESCGYVVRTAQGERYFPCENLSAEPTMYFRISPEDYLNARNRGDIVALVHSHPDGKPCLSSADRTLQIQSGTVCRAC
1239350..1242584                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail fiber (host specificity) protein; Lambda gp J homolog; AU60_33440; phage(gi169257317)     0.0                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349NGLQSVLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTRTVVSENVDRLRFTFGVQMLQETMDKGDRNPSSVNLLIQFQRSGIWNTEFDITINGKITTQYLASVVADNLPPRPFSVRMVRVTPDSTTDRLQNKTLWSSYTEIIDIRQGYPGTAVAGLLVDAEQFGSQQVTRNYHLRGRIFQVPSNYDPDTRTYTGLWDGAFKPAYTNNPAWCTMDKLTHPRYGLGRRIGGADVDKWALYAIAQYCDQPVPDGFGGTEPRMTLNAYITTQRKAYDVLADFCSVMRCMPVWNGRKMTFIDRPSDKAWTYTNGNVVGGRFKYSFSALKDRHNAIEVRYTDPLNGWQTSTELVEDHASQARYGRNLLKMDAFGCTSRGQAHRTGLWVMMTELLETQTVDFSVGAEGLRHTPGDIIEVCDNDYAGASVGGRITDLDISTRTLTLDREITLPESGATTLNIVGPDGKPFSTEIQSQPAPDRVVTKVLPETVQPYSIWGLKLPSLKRRLFRCVRIKENDDGTYAITALQHVPEKESIVDNGAHFDPLPGTTNSIIPPAVQHLTVSTDNDSTLYQAKAKWGTPRVVKDVRFVVRLTTGSGNEGDPVRLVTTATTSETEYAFHELPLGDYTLTVRAINGYGQQGEPASVAFSIQAPEAPSTIEMTPGYFQITVTPHQTVYDASVQYEFWYSATQLATAADIQSKAQYLGVGSFWIKDGLKPLHDAWFYVRSVNLAGKSVFAEASGRPGDDAKGYLDFFKGLITETYLGTELLKKNPDGGRQQTATIFEGVAGRRMERHVGRQNRADQRRQILCGRTWTEHGRHAREDKPVPGGGGSHCLYPGKRKRDARIRHAGRPDNHEGVPEIPERADHYQWRESSGIFPDAGWKADCEKCGYQRPYQRCIWLVYGRNQCHLRVFWRDRSKRVCRYLRLKSHAGREHQGDERRTQHLNTVYRQRHLSDRENHHGDGLARWHRCHHRHDKYRPGENGGGYAVYRRDSGHVSDRRLFGLHHFTCRGYQRLSEGPWAVHHVCFRLAAGDGFPVGEQLHKLA
1242706..1242933                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; AU60_08155; phage(gi169257321)     5.51e-41            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKDEAAEKAAQLRQAEETKSRLLQMASEKIAPLQDAVDLGLATDDEKAQLDEWKKYRVLVNRVDTLNPDWPEKPS
complement(1243135..1243857)       type III secretion protein SopE2; AU60_08160                                         N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MTKITLFPHNFRIQKQETTPLKEKSTEKNSLAKSILAVKNHFIKLNSKLSERFISHKNTESSATHFHRGSASEGRAVLTNKVVKNFMLQTLHDIDIRGSASKDPAYASQTREAILSAVYSKYKDQYCNLLISKGIDIAPFLKEIGEAAQNAGLPGATKNDVFTPSGAGANPFITPLITSAYSKYPHMFTSQHQKASFNIYAEKIIMTEVVPLFNECAMPTPQQFQQILENIANKYIQNTP
1244067..1244308                   PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; AU60_08165; phage(gi169936026)         7.96e-15            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349EMERELIVERTSAGLAAAREQGQIGGRRPKLTTEQWAQPGASLGPEYRDSRRLFMMLAFRRCTENFRRVTCLCHSWENAA
complement(1244337..1245137)       hypothetical protein; AU60_08170                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MIINVGHVATEKFDTTGVSACNNQQSTSVDLSSCIINAASECTVFVRTIIKKSDSYDAMQIDRLKIDTQEKYDALNLQREHHKKFLQTIKANSFDRAMAERPENPISLSLIYSSIDSIKYNTGNCADMSLILGAIIAKYIPQRLTGIGFSKNNVFDARISTSLMYNSASGGNHVVVFLTFTDSKGISEYILDPWLDARIFKKEESYEIYKNNSSEYINENHCFEAYDKYTAIMNSAEYIDAITKTINLLYRVNLDEIQLTNPFKFI
1246010..1246046                   attR                                                                                 N/A                 CGAATTTCTGTATTCCGGTCTTTTTGGTTATATCACA
complement(1246082..1246351)       PHAGE_Entero_HK022_NC_002166: integrase; AU60_33445; phage(gi9634144)                3.53e-15            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MISAGIRKNSPTGNIHPDGLTKKFVKARKISDVKCSDNPPTFHEIRSLLGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNKAYVML
complement(1246366..1246935)       PHAGE_Entero_HK022_NC_002166: integrase; AU60_33450; phage(gi9634144)                1.88e-47            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEMILAEVTTRHIAEFLESWIAEGKNTMAGAMRSVLSDMFREAIVEGRITTNPVEPTRAPEIKVARERLQLETYNATRTAAEYLPVWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGMKIAFPLSLTLQAPGLRPGRLSIAADW
complement(1246995..1247648)       PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; AU60_08185; phage(gi169257272)     1.20e-15            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MPDNTPTTHEENAARLSQAGKCLRDIEAGRFQCDEEKPQPTGELADEPATPEAVEQDTTEHHPAPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAARGEYVEGISDPNDPKWVHNNYSASNQGEKEEVVQEEKQPAAEPEAVTRNADGTFDVSALFPPPSNQTEKTEARTERDGETPKESNQQETAGDTGQEITTDGGSGTTS
1247679..1247909                   PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage endolysin; AU60_08190; phage(gi169257182)     5.24e-38            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MNGKKAFAPRSAKIRITGLENYTRCGVALKLDLVANPGQLELERHAARSAAWLFVTKGCLKYSGDLVRVTQIINGG
1247963..1248496                   PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; AU60_33455; phage(gi16765210)     1.15e-123           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MNLLSALLKRYWLQLVFILLMAGAFIAGNVWSDRGWQKKWADRDSAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAKKLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEEAKHYAGIADERYRAGMTCERVYDSVRESNNYRRH
complement(1248753..1248920)       lytic enzyme; AU60_08200                                                             N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKNIITIIVAIIIVFYAGMWSQKFLMEDECLDSGGSYNENGICNIAGSHQDVPPK
complement(1248985..1249173)       hypothetical protein; AU60_08205                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MNKKHTNHHLLKINDIKTESYNMMMMHEKSKMRQIPRRCRPVADRPAGSTFLKYEQLSTTTT
1249228..1249719                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, small subunit; AU60_08210; phage(gi169257298)     2.41e-35            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MDGELKNLKCNICQLAAITGLHRQTVVSRLSGVPLAPGSNEKNKLYLLTDVIRVLMETPVSQAAEHQGPNKMTPKERKNWFDSEKGRFWLEKEMKQVVPLPEVRQQMAAIVKAITQVLEVWSDKLERDKGWSADQLNEAQDVVDEARILLVKAIQETADDDGE
1249706..1249885                   PHAGE_Salmon_Fels_1_NC_010391: bacteriophage terminase, large subunit; AU60_08215; phage(gi169257185)     6.07e-29            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MTGNKYGSAAAVRREVAEYLRPPRRMPVAEGIKQFMFVPRGANTAVPWDDTLASQSFPK
1249905..1250279                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, large subunit; AU60_08220; phage(gi169257299)     3.62e-69            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MFRDGSFLQIGWPSITVFSSSDYKRVALTDYDRFPEDIDGEGDGFSLASKRTTTFMSAGMTPAESSPGREITDVKWRRSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGDWFQSAMENMVGYG
1250272..1250868                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; AU60_33460; phage(gi169257320)     5.26e-120           SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MGEVQTKAPLDSLALTGTPTAPMPETTAAGIEIATAAFVAAKVAQLVGSAPEALDTLQELADALGNDPNFAITVLNKLAGKQPLDETLTALSGKSADGFIEYVGLRETINHAADALHKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGGLPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEY
1251189..1251875                   PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; AU60_33465; phage(gi16765208)     1.98e-90            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MDGNKSHSYTARAQDIDLGTKTTSSFDYGTKSTNTTGNHTNQFGGYINSYWGDSNHTSFQLGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVVADGNAETFGLMDGGVDAAITAYFGSQLQERVQQNIIREYLGEQPVGTAFVIETGNSKHPWLVHAPTMRVPLIIDGTDAVYNATRAALLAIFQHNKSAGEDRKITSVALPAMGAGCGQVPPDSVARQIVLI
1252088..1252324                   PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; AU60_33470; phage(gi16765208)     9.15e-47            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MNDEAAEAAARLREAEGTKNRLLQITSEKIAPLQDAVDLDEATNKEKASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
complement(1252421..1252621)       PHAGE_Phage_Gifsy_1_NC_010392: PagK-like protein; AU60_33475; phage(gi169257211)     1.14e-41            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKHVKSVFLAMVLILPSSLYSALTIAADSQDHKKEETIKPIPQKWCTLWPAGIPFPEDWFKMCRGY
1257467..1257478                   attR                                                                                 N/A                 CTTATGATCAAT

#### region 3 ####
1466673..1466685                   attL                                                                                 N/A                 CTTTTTTGAATTA
1467010..1468383                   PHAGE_Entero_CAjan_NC_028776: helicase-like protein; AU60_09705; phage(gi971742387)     3.74e-06            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPSLPLAAEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKSCRVRLLK
complement(1468427..1469362)       tRNA 2-thiocytidine(32) synthetase TtcA; AU60_34160                                  N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MQEIQKNTKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIVRFAEAKAFPIIPCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVDGGDLAFDREEIPLQPAGWQPEEDDTALEALRLDVIEVK
complement(1469414..1469698)       PHAGE_Entero_phiP27_NC_003356: putative integrase; AU60_34165; phage(gi18249865)     2.93e-32            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349FMPRMSKGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
complement(1469679..1470296)       PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; AU60_09730; phage(gi985761253)     1.22e-47            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MSDNKTEYSYYIKVKNESARKRLGFPFAFWWKTESSEAAATARLAVSMLDAGFEPTDFAKPVRVNSPAVNELPPEGSFDTTFCQKYELGGEDGKTFMLIPGTPATDAHDEKTEECADDAGTEESGTDTSDNDECQDCEVSVATLPFPQRVLHIFTYAATDKKYLHHATRAQRRHITVLEMEQENSYIQNLLMVLRKSEQVHAQDE
complement(1470324..1470641)       hypothetical protein; AU60_34170                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKNVPESVIAELRQLSGKIRTLCIENNMPCVVSYARDCDDESVSRTLVAYTDSETGAYDRSITAAIMLLKMNEAPPENFISLLKLMECKELVTNAFCSMKNESLH
complement(1470726..1470947)       PHAGE_Shigel_Stx_NC_029120: Kil protein; AU60_34175; phage(gi985761255)              1.16e-40            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MIAHHFGTDEIPRQCITPGDYVIHDGRTYIASANNIKKRRLYIRDLTTQRCITDCMVKVWLNRNGLPAKAESW
1471385..1471906                   hypothetical protein; AU60_09735                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MSETALVIVKFLIGKSVGQFMLTVALFFLIIIFIPRDITELIEARSDLPYAVQIFSFAVAYLIVLILKVTGYFFVSALPLCQRRGRAKRMLKTLNSLSTEQLFLLEPFLKTHSPTFRASWDNPDADALVKAGIVRPAGSCIDGVSVMFKIEPEYESLMLSTWNPCTKRFDISR
complement(1472014..1472178)       PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; AU60_34180; phage(gi472340166)     7.43e-11            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MDKLQKIHLGNNESLVCGVFPNQDGTFTAMTYTRSRTFKTETGARRWLERNSGE
complement(1472554..1473021)       PHAGE_Pseudo_F116_NC_006552: transcriptional regulator; AU60_09755; phage(gi56692918)     1.50e-10            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MRKKREEIAPPEATQRLRAIWDAKKRDLKLTQEIAADLMGFETQSTVSHYLNGKAPLNTDAALKFSVLLRVKPEELRPDLADLMNYVRSSGTYDDNFEGGGWRMVSRQQADLLNLFDILPESEKEKLIDRLKGQNELXKEAFQNMLAAQKRLKNQ
1473294..1473623                   PHAGE_Shigel_Stx_NC_029120: LygF; AU60_09765; phage(gi985761265)                     4.59e-22            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MNSGLITLTELRRMTGLTIYSTRHYLDKAERCGDVYQAGRRGGIFPSEEAYRAWKKQAKVDADLIWKLPDGEVRRYDRHHNVICRECRKSEYMQRVLAFYRGNFQEVLL
complement(1473785..1474339)       hypothetical protein; AU60_09770                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MNKINVLGVIIKHYKTMSDQRGTMLMSDITVHFIVPLSLSFVLCWTYGIMKPAIASVFVNFGAITTALLMSAVIMIYEQKQKTITKISDIIEGNKSRDKLISLNTNKTIYEQLCHNVAYAILTSIVLVIFSVIIYFLPDNAVDLMKWYFRAPAYIVSFLAYTSFFITVITFLMVIKRFSTILDN
complement(1474336..1475268)       hypothetical protein; AU60_09775                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MHSVNFYSFRVLTHKGSRASKKLNDLGLSNKKTAYELFVDYFTLYKNTPIEFGVSKTKISLEQHTKLHFDNTKKIIYGYIKVGKYGESSEIKDVKLKKVHYRTTAYDVTLKERYILIYLPDNLEEGIIAFHSCDNISARGVLSDSITEYLKKQFQLEARINPLHHKKIPQYILNSELKQIKAQGYKAPEDIADSFGKNKTNIKTDLIIKANDGIFGSFRDLRNKNIGNIIEIIEDKCDAIKVSLQLGSRTVVFNYDTILKKGISAELDDNDLKIDPLTGIPDLTALHDTIKNLSNDILEELHCGNKGVII
complement(1475449..1475593)       hypothetical protein; AU60_34185                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MLTGAFLYLPFGVHAGRPQAPATILLNSPFPANRFYPQRKFYQYPLA
1475638..1475850                   PHAGE_Entero_933W_NC_000924: protein MokW; AU60_09780; phage(gi9632542)              2.64e-39            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MLCTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
1476374..1476973                   PHAGE_Entero_mEp237_NC_019704: hypothetical protein; AU60_09790; phage(gi435439315)     1.47e-71            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MAHLQLVKQTSSGLLLPATPESEDFLRSVKIGAWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPIGGAILPQEQELITGFVDFLCESAAQGHSPALSDAAEQYLHKVAVNRTLDVALLKSFDAFREWVTIQAGFYTEHYYPDGSRGRRAKSIAFANMDETEFQQVYKAVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
1476973..1477263                   PHAGE_Shigel_Stx_NC_029120: hypothetical protein; AU60_34190; phage(gi985761275)     1.41e-30            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MADLRKAARGLMCTVRIPGHCNHNPETSVLAHYRLAGTCGTATKPNDMQAAIACSSCHDIVDGRVKIDDFTKTEIRLMHAEGVFRTQEIWREKGIL
1477260..1477796                   PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; AU60_09805; phage(gi100055)       6.94e-07            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MIYPTNTGKSGEHLRLSTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAINDALRRMKKAGLEKPELEVFLREMINGKQKSWLAHCTDTEALIIDRVVGEVLTDHPGLLGILNQRYVGRGMSKRRMAELLNEQYPEWALITCRRRVEQWLSIAEFILYSPMRKAFDYA
1478821..1478833                   attR                                                                                 N/A                 CTTTTTTGAATTA
1479167..1479178                   attL                                                                                 N/A                 CAATTTTTTTAC
1479967..1480362                   PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AU60_34195; phage(gi100118)       1.12e-62            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MLGIFRKKTRKAIVEVKKMENRDAVEATVWGAYSIAYADGTCDAKEIAVLEKTIAALPAFAPFSGEIAQMSANIRARYEASPRSANAQALRELADVAGTAEAVDVLCLYWPRSCPALLTTTVNRWMRCVQW
1480462..1480743                   PHAGE_Entero_phiP27_NC_003356: putative holin; AU60_34200; phage(gi18249893)         2.47e-24            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MESNLTGTLNAGLCLVTVLALFLYRRNGARYKPGIAWLSYLLMLGYALVPFRFLAGHYPSSSWPVVLMNALFCGLVLWARGNVSKILSLLRLR
1480740..1481285                   PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; AU60_09820; phage(gi422935930)         1.04e-86            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MKPKDEIFDEILGKEGGYVNHPDDKGGPTKWGITEKVARAHGYRGDMRNLTRGQALEILETDYWYGPRFDRVAKASPDVAAELCDTGVNMGPSVAAKMLQRWLNVFNQGGRLYPDMDTDGRIGPRTLNALRVYLEKRGKDGERVLLVALNCTQGERYLELAEKREADESFVYGWMKERVLI
complement(1481827..1481967)       PHAGE_Entero_phiP27_NC_003356: putative integrase; AU60_09830; phage(gi18249865)     6.30e-16            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
1481986..1482138                   multidrug transporter; AU60_09835                                                    N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MSRMVRITATNASTFLWQDTQWFKSVFILSSVLLKISSRPEKYWNEEMYD
1482131..1482469                   PHAGE_Acinet_ZZ1_NC_018087: putative quaternary ammonium compound-resistance protein qacE; AU60_09840; phage(gi392973036)     3.10e-13            SalmonellaentericasubspentericaserovarEnteritidisstrSA20100349MTKEAVIFLFIAIVVEVIATISLKLSDSFTRLVPSLVTIIGYCIAFWCLTIPMRTIPAGIIYAIWSGVGIVLIGLIGWLFLGQKLDMPAIIGMLLIICGVIVINLFSKSVSH
1492465..1492476                   attR                                                                                 N/A                 CAATTTTTTTAC
