gi|00000000|ref|CP007464.2|  Salmonella enterica subsp. enterica serovar Enteritidis str. 4685731, gc%: 51.72%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1011964..1013166)       PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; AV40_04710; phage(gi100242)     1.40e-49            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLQEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTNDNGKLNIRLTGPWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTALTANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQAHEWFQAHQQISPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASRYQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQVRKAS
1013312..1013326                   attL                                                                                 N/A                 TTATAAAAATGTAGC
complement(1013361..1013771)       PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; AV40_04715; phage(gi169257271)     1.46e-44            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MENTNIVTTEQQAPNTISASNAIFNVQALGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
1013792..1014421                   hypothetical protein; AV40_04720                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MYGVQGTPDCYRIELKNVYGVQENLISYRQASLGAWVAIAGGGDPYEVAYAIYKAVPDISVLTNDVVNPSGAAVDKKTIPIIVYPDTYHVPFVVPSSQNVTLLITWNTASTSYIDPTGIEKAVQQSIADYINGIATGEPINIFLIRDIFLNQVKGLVSSNLVSMIDIQVGINGKIVPPATDSSLVYGDTYAYFSTSSSQIQVKQYGSSS
1014405..1015031                   hypothetical protein; AV40_04725                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MAALLESIIPAYPYTQYNDDPDIVAFFDAYNKLAQGYLDYFNNLNLPCWTSPAITGELLDWIAAGIYGESRPLLQISEDAIARGAYNTIEYNNVAYAKLRNYVPGSASYVPDDYFKRILTWNFYKGDGSHFCINWFKRRLARFIHGANGIDPPVQSTFDISVMPDKGIFFVSIPDYGDGVGHFLKDAIDQSLVKLPFIYTYSVTVVEQ
1015028..1016737                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; AV40_04730; phage(gi169257320)     0.0                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MIIGFGNNVVSSLAADITASQTTIQVMPGVGAMFANLLTSDYANSSNPLKTXAKITLTDAKETVFEVCHLTAVNNDMLTVIRGQEGTTAKGWSLNDVIANFATRGSENQFVQIEELQSGHYVAGVAGGTENNLTLELPATYFVNGGVDWTLRTPLVVIPALNNTGASTLQLTMGGRVLGIFPLYKGNKAELSANDIIKDIPVLCVLDNTKTYFSVLNPLEIYLGSRYLQKDQNLSDVPDKAKGRSSLEVYSKTESDENYMAKSQCGADIPNKPLFVQNIGALPASGTAVAANRLASRGALPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGYALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTARAQVTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA
1016737..1017318                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; AV40_04735; phage(gi169257321)     8.40e-143           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MTFKMSEQAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETQTWSLHEDHRGEMVYDTTTGNQVYISAPGPLPENVTSVSPGGEYQKWDGKAKVWVKDEAAEKAAQLRQAEETKSRLLQMASEKIAPLQDAVDLGIATDDEKARLDEWKKYRVLVNRMDTAAPDWPERPASQ
1017796..1018764                   PHAGE_Phage_Gifsy_2_NC_010393: prophage virulence determinant; secreted effector protein; AV40_04745; phage(gi169257322)     0.0                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MPFHIGSGCLPAIISNRRIYRIAWSDTPPEMSSWEKMKEFFCSTHQTEALECIWTICHPPAGTTREDVVSRFELLRTLAYDGWEENIHSGLHGENYFCILDEDSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGVERTDITYNLTSDIDAAAYLEELKQNPIINNKIMNPVGQCESLMTPVSNFMNEKGFDNIRYRGIFIWDKPTEEIPTNHFAVVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDFSNSSIAANAYDALPRELESESMAGKVFVTSPRWFNTFKKQKYSLIGKM
1019032..1019280                   PHAGE_Stx2_c_1717_NC_011357: transposase; AV40_04750; phage(gi209447153)             2.73e-30            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MEIDNNICENALRCVALGRRNYLFFGSDRSGEAAAIIYSLLGTCKLNGVESEAWLRDVLWKISDWSSNRVHELLPWNLETVK
complement(1019412..1020038)       PHAGE_Pseudo_F116_NC_006552: hypothetical protein; AV40_04755; phage(gi56692976)     3.72e-36            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MCGRFAQAQTREEYLAYLADEADRNIAYDPQPIGRYNVAPGTKVLLLSERDEQLHLDPVIWGYAPGWWDKAPLINARVATAASSRMFKPLWQHGRAICFADRWFEWKKEGDKKQPYFIHRKDGKPIFMAAIGSTPFERGDEAEGFLIVTSAADKGLVDIHDRRPLALTPETARVWMRQFLEPHSKSITYRVIPALTRPMMRKDTNPCQ
complement(1020222..1020401)       hypothetical protein; AV40_04760                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MIVNLYQDNYSGYRQHGGSGVGGSNPLVPTKIPLKNQPVRAVFFMAQFPTGKLWGETGE
complement(1020398..1021084)       virulence protein; AV40_04765                                                        N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MLRHIQNSLGSVYRSNTATPQGQIIHHRNFQSQFDTTGNTLYNNCWVCSLNVIKSRDGNNYSALEDITSDNQAFNNILEGIDIIECENLLKEMNVQKIPESSLFTNIKEALQAEVFNSTVEDDFESFISYELQNHGPLMLIRPSLGSECLHAECIVGYDSEVKKVLIYDSMNTSPEWQSNIDVYDKLTLAFNDKYKNEDCSICGLYYDGVYEPKPLHSSSWKDWCTIL
complement(1021355..1021546)       PHAGE_Entero_mEp390_NC_019721: DinI-like family protein; AV40_04770; phage(gi428782688)     5.87e-34            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MFVELVYDKRNVEGLEGASEIILAELTKQVHQIFPDAEVRVKPMQANCLNSDTNKSDRENLNR
1021852..1021866                   attR                                                                                 N/A                 TTATAAAAATGTAGC

#### region 2 ####
1226333..1226344                   attL                                                                                 N/A                 CTTATGATCAAT
1226370..1226406                   attL                                                                                 N/A                 CGAATTTCTGTATTCCGGTCTTTTTGGTTATATCACA
complement(1226451..1227530)       PHAGE_Entero_HK022_NC_002166: integrase; AV40_22505; phage(gi9634144)                2.82e-93            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MSRKKYDANLPRNLTYRKASKSFFWRNPLTDKEFPLGQIARRDAITQAIEANNFIAQNHTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRGNQLATVREKMGEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDKAYMML
complement(1227505..1227783)       excisionase; AV40_22510                                                              N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MTMSFVRLETWGELNYPDDPPPLTTLRRWARNGNIYPTPVLHGRTYRVDPDAFYIKPNKVGLVLEQHHPNGRTGKPSALLEKLISESKKVRC
1228197..1230176                   hypothetical protein; AV40_05870                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MRLKLIVKSFALAGLLSSTALTPLFAQEAPKGATASTKQANDALYNQLPFSDNTDFTNAHKGFIAGLPEEVIKGEQGNVIWNPQQYAFIKEGEKSPDTVNPSLWRQSQLINISGLFEVTDGVYQIRNLDLSNMTIIEGKEGITVVDPLVSAETAKAGMDLYFKNRGNKPVVAIIYTHSHVDHYGGVRGVVDEADVKSGKVKVYAPAGFMEAAVAENIMAGNVMSRRASYMYGNLLKPDASGQVGAGLGTTTSAGTVTLIAPTNIIDKDGQKEVIDGLTYDFMLAPGSEAPSEMLWFIEEKKLIEAAEDVTHTLHNTYSLRGAKIREPLPWSKYINEAIVRWGDKAEIIMAQHHWPTWGNENVVGLLKSQRDLYRYINDQTLRMANEGLTRDEIAANFKLPDSLAKTWANRGYYGSISHDVKATYVLYLGWFDGNPATLDELPPEEAAKKFVEYMGGADAILQKAKADFDQGNYRWVAQVVSKVVFADPNNQNARNLEADALEQLGYQAESGPWRNFYLTGAQELRNGVVKGPTPNTASPDTVRAMTPEMFFDFLAVHINGEKAGNARAVFNIDLGSDGGKYKLELENGVLNHTANAEAKDADATITLNRDTLNKIILKEETLKQAQDKGEVNVTGNAAKLDEMLGYMDKFEFWFNIVTP
complement(1230194..1230385)       hypothetical protein; AV40_05875                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MNHATTSYCHLMKKAVHNRIRTDWYQGHVLQQQIHKMKQDIKNEGKIEYKKRTELSEVTSLQH
1230865..1231113                   PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; AV40_05880; phage(gi423262436)     1.08e-10            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MLKFVIYGDTVKNLNKTFTCKYAVIRRDDMTVIAEMDFFPDCNRSLMYRDGRYVRFLPLLQNDIMGSDTLINELTIRAGYHE
1231177..1231776                   PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; AV40_05885; phage(gi169257286)     2.14e-70            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MAHLQLVKQTSSGLLLPATPESGDFLRSVKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWMPTGGTVTSREQKLISGFVNFLCDSAGQEYTPALNEAAEQYLHNVATLRTGDVALLKSFDAFREWVTVQAGFYTEHFYPDGSRGRRAKSIAFASMDETEFQQVYKAVLNVLWNWILFRKFSSLEEVENVAAHLLEFA
1231773..1232000                   PHAGE_Phage_Gifsy_2_NC_010393: NinG; AV40_05890; phage(gi169257288)                  3.59e-12            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKMTWFQHPVCTTEEADELVAGYRRRGVKVERYGEAEVLELESNNTPQRWTVEELKEIRIAALADLRALKKLEAA
1232130..1232819                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; AV40_05895; phage(gi169257244)     5.53e-112           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MNTQYLEYVRQQLIVATADLSGATKGQLQAWLENAQLYTKNYPRKKQRIRDEVTGKMITLNNPPIAGKQSLAKGSAIPLVQPVEYSTSSWRRALLSLEEHNKAWLLWNYSENTCWEYQVTVTRWAWEKFSQQLEGKRVAKKTLARLRQLIWLAAQDVKAELARRETYEYQTLAELMGVAKSTWTETYMSHWLVMRNSFKRLDSDALISVTRSRSQQKATNLDISLAKPN
1232916..1233440                   hypothetical protein; AV40_05900                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MFYRDLFQVFGPDPLYKEEEGIAILREQYGIEAPEQIFKQIYCGLSNNSEFQTLYGHLNLKSLKWDLVRLKTAEFTKFGRNATYPDYMLEISEDFNACGSKFCIDAREEVANHWLKFGTWAEPPMFIERSLIIPGESGLHLMEGHTRLGTLLGAIKYKFVQLADTHELYIASQK
complement(1233814..1234263)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; AV40_05905; phage(gi169257293)     1.10e-105           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAGGYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLSENSLTRTHQSNCNTRSQTHSSSTSKTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF
complement(1234624..1235310)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; GtgA; AV40_05910; phage(gi169257294)     6.16e-169           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MPTGIKPIFINNMMSTYGLSHPHDSKVFPDLPEHQDNPSQLRLQHDGLATDDKARLEPMCLAEYLISGPGGMDPDIEIDDDTYDECREVLSRILEDAYTQSGTFRRLMNYAYDQELRDVEQRWLLGAGENFGTTVTDEDLESSEGRKVIALNLDDTDDDSIPEYYESNDGPQQFDTTRSFIHEVVHALTHLQDKEDSNPRGPVVEYTNIILKEMGHTSPPRIAYEFSN
1235580..1235915                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; holin; AV40_05915; phage(gi169257295)     2.16e-75            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKMNDKTPEFWAAVLTGLKNAWPQILGALMAGLIAYGRLIYDGATRKNKWLEGVLCGALSLCVTSALDVVGLPVSISPFVGGIIGFVGVDKLREIAISALKKRAGVNDENQ
1235902..1236351                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; endolysin; lysozyme; AV40_05920; phage(gi169257296)     3.42e-106           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS
1236369..1236848                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; Lambda gpRz homolog; AV40_22515; phage(gi169257297)     6.25e-115           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDEKYTKELADAKAENDALRDDVAAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW
1237056..1237367                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, small subunit; AV40_05935; phage(gi169257298)     2.12e-70            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747VDQEIKSLELNITQLSAITGAHRQTIASRLKGVKTSGGNGSNLKIYRLVDILTAMMTMPAVTGENDPNKMKPSDRRAWFQSEMTRIELEKEMRTLIPASEVLSV
1237447..1237626                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; Lom homolog; AV40_05940; phage(gi169257312)     1.66e-35            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MIGAANGHIKDNWGNSDNKTAFAYGAGIQLNPVENIAVNASYEHTSFSTDADSDVKAGT
complement(1237743..1238276)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; superoxide dismutase precursor; AV40_05945; phage(gi169257313)     6.02e-125           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKYTILSLVAGALISCSAMAENTLTVKMNDALSSGTGENIGEITVSETPYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKPAPLGGGGARFACGVIEK
1238366..1239061                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpL homolog; AV40_05950; phage(gi169257314)     9.41e-173           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MQDIPQETLSETTKAEQSAKVDLWEFDLTAIGGERFFFCNEPNEKGEPLTWQGRQYEPYPIQVQDFEMNGKGASPRPNLVVANLFGLVTGMAEDLQSLVGASVVRHQVYSKFLDAVNFSNGNPGADPEQEAVARYNVEQLSELDSSTATIILASPAETDGSVVPGRTMLADSCPWDYRDENCGYDGPPVADEFDKPTSDPKKDKCSHCMKGCEMRNNLVNAGFFASINKLS
1239071..1239352                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpK homolog; AV40_22520; phage(gi169257315)     3.30e-58            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MINDDILAHARQCAPAESCGYVVRTAQGERYFPCENLSAEPTMYFRISPEDYLNARNRGDIVALVHSHPDGKPCLSSADRTLQIQSGTVCRAC
1239331..1242565                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail fiber (host specificity) protein; Lambda gp J homolog; AV40_05955; phage(gi169257317)     0.0                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747NGLQSVLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTRTVVSENVDRLRFTFGVQMLQETMDKGDRNPSSVNLLIQFQRSGIWNTEFDITINGKITTQYLASVVADNLPPRPFSVRMVRVTPDSTTDRLQNKTLWSSYTEIIDIRQGYPGTAVAGLLVDAEQFGSQQVTRNYHLRGRIFQVPSNYDPDTRTYTGLWDGAFKPAYTNNPAWCTMDKLTHPRYGLGRRIGGADVDKWALYAIAQYCDQPVPDGFGGTEPRMTLNAYITTQRKAYDVLADFCSVMRCMPVWNGRKMTFIDRPSDKAWTYTNGNVVGGRFKYSFSALKDRHNAIEVRYTDPLNGWQTSTELVEDHASQARYGRNLLKMDAFGCTSRGQAHRTGLWVMMTELLETQTVDFSVGAEGLRHTPGDIIEVCDNDYAGASVGGRITDLDISTRTLTLDREITLPESGATTLNIVGPDGKPFSTEIQSQPAPDRVVTKVLPETVQPYSIWGLKLPSLKRRLFRCVRIKENDDGTYAITALQHVPEKESIVDNGAHFDPLPGTTNSIIPPAVQHLTVSTDNDSTLYQAKAKWGTPRVVKDVRFVVRLTTGSGNEGDPVRLVTTATTSETEYAFHELPLGDYTLTVRAINGYGQQGEPASVAFSIQAPEAPSTIEMTPGYFQITVTPHQTVYDASVQYEFWYSATQLATAADIQSKAQYLGVGSFWIKDGLKPLHDAWFYVRSVNLAGKSVFAEASGRPGDDAKGYLDFFKGLITETYLGTELLKKNPDGGRQQTATIFEGVAGRRMERHVGRQNRADQRRQILCGRTWTEHGRHAREDKPVPGGGGSHCLYPGKRKRDARIRHAGRPDNHEGVPEIPERADHYQWRESSGIFPDAGWKADCEKCGYQRPYQRCIWLVYGRNQCHLRVFWRDRSKRVCRYLRLKSHAGREHQGDERRTQHLNTVYRQRHLSDRENHHGDGLARWHRCHHRHDKYRPGENGGGYAVYRRDSGHVSDRRLFGLHHFTCRGYQRLSEGPWAVHHVCFRLAAGDGFPVGEQLHKLA
1242687..1242914                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; AV40_05960; phage(gi169257321)     5.51e-41            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKDEAAEKAAQLRQAEETKSRLLQMASEKIAPLQDAVDLGLATDDEKAQLDEWKKYRVLVNRVDTLNPDWPEKPS
complement(1243116..1243838)       type III secretion protein SopE2; AV40_05965                                         N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MTKITLFPHNFRIQKQETTPLKEKSTEKNSLAKSILAVKNHFIKLNSKLSERFISHKNTESSATHFHRGSASEGRAVLTNKVVKNFMLQTLHDIDIRGSASKDPAYASQTREAILSAVYSKYKDQYCNLLISKGIDIAPFLKEIGEAAQNAGLPGATKNDVFTPSGAGANPFITPLITSAYSKYPHMFTSQHQKASFNIYAEKIIMTEVVPLFNECAMPTPQQFQQILENIANKYIQNTP
1244048..1244289                   PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; AV40_22525; phage(gi169936026)         7.96e-15            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747EMERELIVERTSAGLAAAREQGQIGGRRPKLTTEQWAQPGASLGPEYRDSRRLFMMLAFRRCTENFRRVTCLCHSWENAA
complement(1244318..1245118)       hypothetical protein; AV40_05975                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MIINVGHVATEKFDTTGVSACNNQQSTSVDLSSCIINAASECTVFVRTIIKKSDSYDAMQIDRLKIDTQEKYDALNLQREHHKKFLQTIKANSFDRAMAERPENPISLSLIYSSIDSIKYNTGNCADMSLILGAIIAKYIPQRLTGIGFSKNNVFDARISTSLMYNSASGGNHVVVFLTFTDSKGISEYILDPWLDARIFKKEESYEIYKNNSSEYINENHCFEAYDKYTAIMNSAEYIDAITKTINLLYRVNLDEIQLTNPFKFI
1245991..1246027                   attR                                                                                 N/A                 CGAATTTCTGTATTCCGGTCTTTTTGGTTATATCACA
complement(1246063..1246332)       PHAGE_Entero_HK022_NC_002166: integrase; AV40_05980; phage(gi9634144)                3.53e-15            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MISAGIRKNSPTGNIHPDGLTKKFVKARKISDVKCSDNPPTFHEIRSLLGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNKAYVML
complement(1246347..1246916)       PHAGE_Entero_HK022_NC_002166: integrase; AV40_05985; phage(gi9634144)                1.88e-47            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEMILAEVTTRHIAEFLESWIAEGKNTMAGAMRSVLSDMFREAIVEGRITTNPVEPTRAPEIKVARERLQLETYNATRTAAEYLPVWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGMKIAFPLSLTLQAPGLRPGRLSIAADW
complement(1246976..1247629)       PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; AV40_05990; phage(gi169257272)     1.20e-15            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MPDNTPTTHEENAARLSQAGKCLRDIEAGRFQCDEEKPQPTGELADEPATPEAVEQDTTEHHPAPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAARGEYVEGISDPNDPKWVHNNYSASNQGEKEEVVQEEKQPAAEPEAVTRNADGTFDVSALFPPPSNQTEKTEARTERDGETPKESNQQETAGDTGQEITTDGGSGTTS
1247660..1247890                   PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage endolysin; AV40_05995; phage(gi169257182)     5.24e-38            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MNGKKAFAPRSAKIRITGLENYTRCGVALKLDLVANPGQLELERHAARSAAWLFVTKGCLKYSGDLVRVTQIINGG
1247944..1248477                   PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; AV40_06000; phage(gi16765210)     1.15e-123           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MNLLSALLKRYWLQLVFILLMAGAFIAGNVWSDRGWQKKWADRDSAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAKKLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEEAKHYAGIADERYRAGMTCERVYDSVRESNNYRRH
complement(1248734..1248901)       lytic enzyme; AV40_06005                                                             N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKNIITIIVAIIIVFYAGMWSQKFLMEDECLDSGGSYNENGICNIAGSHQDVPPK
complement(1248966..1249154)       hypothetical protein; AV40_22530                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MNKKHTNHHLLKINDIKTESYNMMMMHEKSKMRQIPRRCRPVADRPAGSTFLKYEQLSTTTT
1249209..1249700                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, small subunit; AV40_06010; phage(gi169257298)     1.78e-36            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MDGELKNLKCNICQLAAITGLHRQTVVSRLSGVPLAPGSNEKNKLYLLTDVIRVLMETPVSQAAEHQDPNKMTPKERKNWFDSEKGRFWLEKEMKQVVPLPEVRQQMAAIVKAITQVLEVWSDKLERDKGWSADQLNEAQDVVDEARILLVKAIQETADDDGE
1249687..1249866                   PHAGE_Salmon_Fels_1_NC_010391: bacteriophage terminase, large subunit; AV40_06015; phage(gi169257185)     6.07e-29            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MTGNKYGSAAAVRREVAEYLRPPRRMPVAEGIKQFMFVPRGANTAVPWDDTLASQSFPK
1249886..1250260                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, large subunit; AV40_06020; phage(gi169257299)     3.62e-69            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MFRDGSFLQIGWPSITVFSSSDYKRVALTDYDRFPEDIDGEGDGFSLASKRTTTFMSAGMTPAESSPGREITDVKWRRSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGDWFQSAMENMVGYG
1250253..1250849                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; AV40_06025; phage(gi169257320)     5.26e-120           SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MGEVQTKAPLDSLALTGTPTAPMPETTAAGIEIATAAFVAAKVAQLVGSAPEALDTLQELADALGNDPNFAITVLNKLAGKQPLDETLTALSGKSADGFIEYVGLRETINHAADALHKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGGLPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEY
1251170..1251856                   PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; AV40_22535; phage(gi16765208)     1.98e-90            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MDGNKSHSYTARAQDIDLGTKTTSSFDYGTKSTNTTGNHTNQFGGYINSYWGDSNHTSFQLGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVVADGNAETFGLMDGGVDAAITAYFGSQLQERVQQNIIREYLGEQPVGTAFVIETGNSKHPWLVHAPTMRVPLIIDGTDAVYNATRAALLAIFQHNKSAGEDRKITSVALPAMGAGCGQVPPDSVARQIVLI
1252069..1252305                   PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; AV40_06035; phage(gi16765208)     9.15e-47            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MNDEAAEAAARLREAEGTKNRLLQITSEKIAPLQDAVDLDEATNKEKASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
complement(1252402..1252602)       PHAGE_Phage_Gifsy_1_NC_010392: PagK-like protein; AV40_22540; phage(gi169257211)     1.14e-41            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKHVKSVFLAMVLILPSSLYSALTIAADSQDHKKEETIKPIPQKWCTLWPAGIPFPEDWFKMCRGY
1257448..1257459                   attR                                                                                 N/A                 CTTATGATCAAT

#### region 3 ####
1466654..1466666                   attL                                                                                 N/A                 CTTTTTTGAATTA
1466991..1468364                   PHAGE_Entero_CAjan_NC_028776: helicase-like protein; AV40_07110; phage(gi971742387)     3.74e-06            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPSLPLAAEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKSCRVRLLK
complement(1468408..1469343)       tRNA 2-thiocytidine(32) synthetase TtcA; AV40_07115                                  N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MQEIQKNTKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIVRFAEAKAFPIIPCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVDGGDLAFDREEIPLQPAGWQPEEDDTALEALRLDVIEVK
complement(1469395..1469679)       PHAGE_Entero_phiP27_NC_003356: putative integrase; AV40_07120; phage(gi18249865)     2.93e-32            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747FMPRMSKGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
complement(1469660..1470277)       PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; AV40_07125; phage(gi985761253)     1.22e-47            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MSDNKTEYSYYIKVKNESARKRLGFPFAFWWKTESSEAAATARLAVSMLDAGFEPTDFAKPVRVNSPAVNELPPEGSFDTTFCQKYELGGEDGKTFMLIPGTPATDAHDEKTEECADDAGTEESGTDTSDNDECQDCEVSVATLPFPQRVLHIFTYAATDKKYLHHATRAQRRHITVLEMEQENSYIQNLLMVLRKSEQVHAQDE
complement(1470305..1470622)       hypothetical protein; AV40_07130                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKNVPESVIAELRQLSGKIRTLCIENNMPCVVSYARDCDDESVSRTLVAYTDSETGAYDRSITAAIMLLKMNEAPPENFISLLKLMECKELVTNAFCSMKNESLH
complement(1470707..1470928)       PHAGE_Shigel_Stx_NC_029120: Kil protein; AV40_07135; phage(gi985761255)              1.16e-40            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MIAHHFGTDEIPRQCITPGDYVIHDGRTYIASANNIKKRRLYIRDLTTQRCITDCMVKVWLNRNGLPAKAESW
1471366..1471887                   hypothetical protein; AV40_07140                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MSETALVIVKFLIGKSVGQFMLTVALFFLIIIFIPRDITELIEARSDLPYAVQIFSFAVAYLIVLILKVTGYFFVSALPLCQRRGRAKRMLKTLNSLSTEQLFLLEPFLKTHSPTFRASWDNPDADALVKAGIVRPAGSCIDGVSVMFKIEPEYESLMLSTWNPCTKRFDISR
complement(1471995..1472159)       PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; AV40_22635; phage(gi472340166)     7.43e-11            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MDKLQKIHLGNNESLVCGVFPNQDGTFTAMTYTRSRTFKTETGARRWLERNSGE
complement(1472535..1473002)       PHAGE_Pseudo_F116_NC_006552: transcriptional regulator; AV40_07160; phage(gi56692918)     1.71e-10            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MRKKREEIAPPEATQRLRAIWDAKKRDLKLTQEIAADLMGFETQSTVSHYLNGKAPLNTDAALKFSVLLRVKPEELRPDLADLMNYVRSSGTYDDNFEGGGWRMVSRQQADLLNLFDILPESEKEKLIDRLKGQNELYKEAFQNMLAAQKRLKNQ
1473275..1473604                   PHAGE_Shigel_Stx_NC_029120: LygF; AV40_07165; phage(gi985761265)                     4.59e-22            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MNSGLITLTELRRMTGLTIYSTRHYLDKAERCGDVYQAGRRGGIFPSEEAYRAWKKQAKVDADLIWKLPDGEVRRYDRHHNVICRECRKSEYMQRVLAFYRGNFQEVLL
complement(1473766..1474320)       hypothetical protein; AV40_07170                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MNKINVLGVIIKHYKTMSDQRGTMLMSDITVHFIVPLSLSFVLCWTYGIMKPAIASVFVNFGAITTALLMSAVIMIYEQKQKTITKISDIIEGNKSRDKLISLNTNKTIYEQLCHNVAYAILTSIVLVIFSVIIYFLPDNAVDLMKWYFRAPAYIVSFLAYTSFFITVITFLMVIKRFSTILDN
complement(1474317..1475249)       hypothetical protein; AV40_07175                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MHSVNFYSFRVLTHKGSRASKKLNDLGLSNKKTAYELFVDYFTLYKNTPIEFGVSKTKISLEQHTKLHFDNTKKIIYGYIKVGKYGESSEIKDVKLKKVHYRTTAYDVTLKERYILIYLPDNLEEGIIAFHSCDNISARGVLSDSITEYLKKQFQLEARINPLHHKKIPQYILNSELKQIKAQGYKAPEDIADSFGKNKTNIKTDLIIKANDGIFGSFRDLRNKNIGNIIEIIEDKCDAIKVSLQLGSRTVVFNYDTILKKGISAELDDNDLKIDPLTGIPDLTALHDTIKNLSNDILEELHCGNKGVII
complement(1475430..1475574)       hypothetical protein; AV40_22640                                                     N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MLTGAFLYLPFGVHAGRPQAPATILLNSPFPANRFYPQRKFYQYPLA
1475619..1475831                   PHAGE_Entero_933W_NC_000924: protein MokW; AV40_07180; phage(gi9632542)              2.64e-39            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MLCTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
1476355..1476954                   PHAGE_Entero_mEp237_NC_019704: hypothetical protein; AV40_07190; phage(gi435439315)     1.47e-71            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MAHLQLVKQTSSGLLLPATPESEDFLRSVKIGAWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPIGGAILPQEQELITGFVDFLCESAAQGHSPALSDAAEQYLHKVAVNRTLDVALLKSFDAFREWVTIQAGFYTEHYYPDGSRGRRAKSIAFANMDETEFQQVYKAVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
1476954..1477244                   PHAGE_Shigel_Stx_NC_029120: hypothetical protein; AV40_07195; phage(gi985761275)     1.41e-30            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MADLRKAARGLMCTVRIPGHCNHNPETSVLAHYRLAGTCGTATKPNDMQAAIACSSCHDIVDGRVKIDDFTKTEIRLMHAEGVFRTQEIWREKGIL
1477241..1477777                   PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; AV40_07200; phage(gi100055)       6.94e-07            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MIYPTNTGKSGEHLRLSTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAINDALRRMKKAGLEKPELEVFLREMINGKQKSWLAHCTDTEALIIDRVVGEVLTDHPGLLGILNQRYVGRGMSKRRMAELLNEQYPEWALITCRRRVEQWLSIAEFILYSPMRKAFDYA
1478802..1478814                   attR                                                                                 N/A                 CTTTTTTGAATTA
1479148..1479159                   attL                                                                                 N/A                 CAATTTTTTTAC
1479948..1480343                   PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AV40_07205; phage(gi100118)       1.12e-62            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MLGIFRKKTRKAIVEVKKMENRDAVEATVWGAYSIAYADGTCDAKEIAVLEKTIAALPAFAPFSGEIAQMSANIRARYEASPRSANAQALRELADVAGTAEAVDVLCLYWPRSCPALLTTTVNRWMRCVQW
1480443..1480724                   PHAGE_Entero_phiP27_NC_003356: putative holin; AV40_07210; phage(gi18249893)         2.47e-24            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MESNLTGTLNAGLCLVTVLALFLYRRNGARYKPGIAWLSYLLMLGYALVPFRFLAGHYPSSSWPVVLMNALFCGLVLWARGNVSKILSLLRLR
1480721..1481266                   PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; AV40_07215; phage(gi422935930)         1.04e-86            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MKPKDEIFDEILGKEGGYVNHPDDKGGPTKWGITEKVARAHGYRGDMRNLTRGQALEILETDYWYGPRFDRVAKASPDVAAELCDTGVNMGPSVAAKMLQRWLNVFNQGGRLYPDMDTDGRIGPRTLNALRVYLEKRGKDGERVLLVALNCTQGERYLELAEKREADESFVYGWMKERVLI
complement(1481808..1481948)       PHAGE_Entero_phiP27_NC_003356: putative integrase; AV40_07225; phage(gi18249865)     6.30e-16            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
1481967..1482119                   multidrug transporter; AV40_07230                                                    N/A                 SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MSRMVRITATNASTFLWQDTQWFKSVFILSSVLLKISSRPEKYWNEEMYD
1482112..1482450                   PHAGE_Acinet_ZZ1_NC_018087: putative quaternary ammonium compound-resistance protein qacE; AV40_07235; phage(gi392973036)     3.10e-13            SalmonellaentericasubspentericaserovarEnteritidisstrEC20121747MTKEAVIFLFIAIVVEVIATISLKLSDSFTRLVPSLVTIIGYCIAFWCLTIPMRTIPAGIIYAIWSGVGIVLIGLIGWLFLGQKLDMPAIIGMLLIICGVIVINLFSKSVSH
1492446..1492457                   attR                                                                                 N/A                 CAATTTTTTTAC
