gi|00000000|ref|CP007494.1|  Bordetella holmesii ATCC 51541, complete genome. 3699674, gc%: 62.69%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
172377..172388                     attL                                                                                 N/A                 CGCCCGGCCGGC
complement(175084..175938)         PROPHAGE_Shigel_301: serine protease; D560_0189; phage(gi24114232)                   2.24e-08            MRYHLIHAAGSQADSFALNNSQVDIGAYRYQLALNQDGTQADDWYLSTSRQSMSETTRNAVMLANVTPTIWNSELFILRSRLGELRGQAPSNSVWGKYITGKNRVTNNVAYDQTMNGFMVGADRQFDLQTARLFVGGLFSYSDSDLKADDSRGKVDSYALGMYTTWLHDSGYYVDGVVKVNRFKTDNDARFNAGTSKANDKTTGVGVSIEAGKHIVIDSFFVEPYLQLAAFRGGKTKYGYSNGVQVEADSVKSVSAEAGLTLGKTFTLDSGALIKPYARIALNH
complement(175962..176192)         PROPHAGE_Xantho_33913: truncated IS1477 transposase; D560_0190; phage(gi21232570)     1.16e-25            MENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
complement(176197..176784)         PROPHAGE_Xantho_33913: IS1477 transposase; D560_0191; phage(gi77747809)              1.56e-49            MTERSMGVTRACGLVGISRSLFAYESTRSGDAALTERMKEMAVAKRRYGYRRIHVLLRREGWQANHKRIWRLYSLAGLSVRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWGLPSRRKAVVYSAG
177358..177822                     PHAGE_Bacill_G_NC_023719: gp350; D560_0192; phage(gi593777806)                       4.53e-19            MLRDALRERVRGGGLALCLFDINNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAALSAPSASAALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRAKQAGKNRLHLIASRTAGA
complement(177838..177984)         hypothetical protein; D560_0193                                                      N/A                 MAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIEPPVISQEG
178123..178608                     PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; D560_0194; phage(gi374531240)     8.04e-10            MFASASIQAIKAGKQRQTRRIVKPQPPPAATLWYCDPAHAERWIAATARPDDATPAQTVSKWLVCPYGKPGDLIDLAHESGQPFGRAILMGVRIQRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWGERYGARAWAANPWVWVLEFRLLNQNGH
178881..179195                     hypothetical protein; D560_0195                                                      N/A                 MKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVAPAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPRYYKGHRHYDRGHRGHRGHRGHWRD
complement(179265..179417)         hypothetical protein; D560_0196                                                      N/A                 MVNRNSHTRPHNGWWKASSAPRRWLDAMRSDKPAEGQTAAPAAKVPAEQA
complement(179383..179619)         hypothetical protein; D560_0197                                                      N/A                 MIGDFRVRCTVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVSYQDREDAERTSQQIFERINGVRFNGEPEFAHASA
complement(179910..181265)         PHAGE_Bacill_G_NC_023719: gp287; D560_0198; phage(gi593777743)                       2.79e-09            MLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQALPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGVSSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPEHSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQNKPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP
complement(181272..182690)         PHAGE_Bacill_G_NC_023719: gp70; D560_0199; phage(gi593777538)                        2.81e-95            MRVGSARVFFLLSMSNDLFASDPPHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDGQQIRFETEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAYAADEQYFPDGLNPTFYRPTDRGWKLKSSRSWHSWMSLTPRNAPGNGSGATAAAVNANPY
191591..191602                     attR                                                                                 N/A                 CGCCCGGCCGGC

#### region 2 ####
complement(183385..185745)         PHAGE_Mycoba_Minerva_NC_026584: FtsK; D560_0201; phage(gi764159392)                  1.04e-96            MPRISNATPRASRNTRNGPSPFQARISALLREARWILFAALAAWLTLVLATWSPADPGWSHSVSGDAIHNGGGTLGAYLADILLYLFGFSAWWWVVLLLHRVRAGYRRLASNLRVTSGKQPDALPRVHWEEGIGFVLLLTCSLGIEALRLYSWGMHLPGGTDGESGAGGVIGQMLAGWLSRGVGFTGGTLALLVLLAVGLSLFFSFSWLQIAERVGSWLEGLVRRVRDSYAAREDRKVGEVAKAVRTEQVVAKQEKLVHEQPVRIEPAITVVPRSDRAEKEKQQSLFAPPAGESDLPAIGLLDPPLQNQETVSAETIEFTSRLIEKKLADFGVSVVVVAAQAGPVITRYEIEPATGVKGSQIVNLAKDLARALSLVSIRVVETIPGKNLMGLELPNPRRQMVKLSEILGSQTYHASHSVLTMALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINAMILSLLYKTDASHTRLILIDPKMLEMSVYEGIPHLLAPVVTDMRHAANALNWCVGEMEKRYRLMSKMGVRNLAGYNSKIRDAIKREEPIPNPFSLTPDAPEPLQALPHIVVVIDELADLMMVVGKKIEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQMGAETLLGQGDMLYMPPGTGLPVRVHGAFVHDDEVHRVVEALKAQGEPNYIDGLLEGSEGETGDGLSSVTGMGDAESDPMYDQACEVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQAGMVSPMQSNGNREILVPAREEA
185787..186746                     PHAGE_Bacill_G_NC_023719: gp344; D560_0202; phage(gi593777800)                       4.85e-69            MSTPKHAKVLILGSGPAGYTAAVYAARANLSPALITGLAQGGQLMITTEVDNWPADVQGVQGPDLMQRFLQHAERFNTEILFDHIAKVDLSRRPFTLTGDTGNLYTCDALIIATGASAKYLGLASEQTFMGRGVSGCATCDGFFYRNKDVVVIGGGNTAVEEALYLSNICRKVTLIHRRDKFRAEPILVDKLMDKVANGNMELKLFHTLDEVLGDDSGVTGVRIRSTETDATEDLDVDGCFVAIGHQPNTGIFEGQLEMKDGYIITKSGLSGMATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRWLENAGQ
186733..187425                     smr domain protein; D560_0203                                                        N/A                 MRGNKTGLADLKRLHEQVRETRARAEAAEREAAARASAAAPEADVAAFRRAVQAATPLKPSGRLANRRPDATPATATAAAVASRRAAALGEAAPRADAGVSDASDIGALLTDGGTAYVRAGVAPDTARNLKRGQWRVGAELDLHGLRVEQARHAVLSFLDECLEHGIRCVRIVHGKGYGSQGLEPVLKDKARTWLVQKADVLAFSEAPERGGGAGALLVLLRQAEAGGRP
187422..187754                     PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; D560_0204; phage(gi311992758)     3.92e-10            MNSWIHLSMAIVAEIIATSALKSSEGFTRLLPSLVTVAGYAIAFYFLALTLRVIPVGVAYAIWSGVGIVLISLVGALLFKQHLDLPAIIGIALILAGVVVMNVFSKSVGH
187870..188820                     PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; D560_0205; phage(gi971753894)     2.65e-11            MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS

#### region 3 ####
1265382..1265393                   attL                                                                                 N/A                 TGGCGGCACGCC
complement(1276064..1276840)       PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; D560_1346; phage(gi17546158)     8.86e-65            MPQARNLRGNVLQLEGEVRWHDGVGRSEAQGAGAGEQQAQEAVGRVDAGQGGASGSAKPKVVSPQAKREAVRTLMTERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
1276917..1277681                   short chain dehydrogenase family protein; D560_1347                                  N/A                 MPFLWERTLHRFRTNHGEQVKGIATTFAREGANVVVADINEAGGKRVAEAINNAGGRAVFVRADVSRSDDVAALLAATIKAFGGLDTVVNNAGTTHRNRPMLEVEEEEFDRIYAINVKSIFLTAKHMVPHFRAHGGGSFINIASTAAIRPRPGLTWYNGSKGAVVTTSKSMAAELGPDNIRVNCVNPVIGATGLLADFMGVPDTPENRKRFLGTIPLGRFSTPQDIANACLYLASDEAAFITGTCLEVDGGRCV
complement(1277845..1278240)       thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; D560_1348      N/A                 MWAAQYLRFDRPGHWLTSGGAGTMGYGLPAAIGAQIAHPDKTVVCVSGDASVLMNIQELSTAMQHCAPVKVVLCNNGYMGMVRQWQELIHGGRYSHSYNASLPDFVALARAFGWGAARVEHPDELDAALAQ
complement(1278212..1279384)       thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein; D560_1349      N/A                 MLPLYDALHAEPRLRHVLVRHEQAAVHAAEGYARSTGRTGVVFVTSGPGMANTTSGLLDAMCDSIPVLCVSGQVATGAIGTDAFQECDAIGISRSVTKWNTQIRRCEDVADVVGRAFTLTRQGRPGPVLVDFPKDVQLARPCGEHIEPSSAQVAALRARRQAGKTALRLPAGALRRAAAMIAQARRPVFYGGGGLINSGSQACEVFTELVRKTGSPCTLTLMGLGAFPASDPQFVGMLGMHGTLEANLAMHHADLVVCIGARFDDRITGKLSEFCPHARKIHVDIDPASINKVVRVDAALVGDCLPMLQALSAELDALSMPAQRLTDWWQRIEGWRKRDCLAWPGLAAPARRHFASATDGPAQRRAECPRCHRIDRRGPASDVGCAIPAF
1279644..1280123                   asnC family protein; D560_1350                                                       N/A                 MNLDKFDLAILKALQDNARANLTDIGQAVGLSSTPCWNRIKRMETAGVIRGYTVDLDPAKLGYTDTVIVHVTLENHSEETLYEFGRALAEIPEVLEAFLVSGDYDYYIRIAVRDTRDYERLLRERLYRIPGIRHSKSGFVLRSLKEARLPLNLPPAQSS
complement(1280111..1281037)       bestrophin, RFP-TM, chloride channel family protein; D560_1351                       N/A                 MIVRPRPSALALLFILRGSVLPRIAGKLLFMIVAGCIIAAIHAAGYFNPGHLSAVPFSLFGLALSVFLGFRNNVCYDRWWEARKQWGELIVQLRALSRETRVAWDTPLPVEDADVQRQIRRLIAFPHALAARLRQQSEIDAVRPWLDTGDLARLEGRRNVPDALLGLVSQTYREALRAGRFGEVIYQGLMLRLAACGAVQAACERIRFTPTPFAYSLLLHRTAWIFCLLLPFGLVGTLGSIMPLAVAIIAYTFFGLDALGDELEEPFGLDDNDLPLNAMARLTAIDLLESMGQTELPEPLVPQRYQLD
1281187..1281681                   SET domain protein; D560_1352                                                        N/A                 MRRSKLHGNGVFAARKIPAGTRIIEYGGQRISAAEADRRHPTNPDDPFHTFFFALSSGKVIDGGDQGNDARWINHSCTPNCEAQEGRHGKRVYIVALRDISRGEELSYDYGLVLDGRITKALKQGYGCRCGTENCRGTMLALPKKKGSSRNSVEPCLIAVTLDP
1281707..1282927                   PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; D560_1353; phage(gi145708108)     0.0                 MLDRKTIERLGGWEGYRVERVVWPEGESRTVTIYLKPSARTMHCEHCGNRCRQVHETTTRRVRDLPLMALRVTLVVPRRRVWCEQCGGPHLERLSWLGRYQRVTDRLAEAVSQLLESSNILAVARFFQLGWHTVKALDKALLRRAIQEPDWSQIHYLAMDEFALHKGHRYATVVVDPIRRQVLWIGDGRSRETARAFFEQLPTGVAQQIRAVAIDMTTAYELEIQANCPNAEIVYDLFHVVAKYGREVIDRVRVDQANQLRHDKPARRVIKSSRWLLLRNRKNLDPCQSVKLDELLQANQPLLTAYLMRDELKQLWFYQHPGYARQAWDHWLQQAQGSGIAALAHFALKLKAYLHGILSRCRHRLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRSAFPGIPR
1282948..1282959                   attL                                                                                 N/A                 AAAAAGGCGGCC
1283368..1283991                   PHAGE_Synech_S_SKS1_NC_020851: 3,4-dihydroxy-2-butanone 4-phosphate synthase; D560_1354; phage(gi472340887)     5.10e-41            MRFERALHQLRLGRSIILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGQTLDKLELAPMVQRNQSRYATAFTVSIEAASGVSTGVSAVDRVTTIRAAIAPGAQAGDVVSPGHVFPLRAQAGGVLARRGHTEGSVDLARLAGLPPAGVLCELMNADGTMMRGAALERYAAAHGLVALTIAELADHLRATQPEAVLAA
complement(1284204..1284434)       PROPHAGE_Xantho_33913: truncated IS1477 transposase; D560_1355; phage(gi21232570)     1.16e-25            MENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
complement(1284464..1285027)       PROPHAGE_Xantho_33913: IS1477 transposase; D560_1356; phage(gi77747809)              4.96e-49            MTERSMGVTRVCGLVGISRSLFAYESTRSGDAALTERMKEMAVAKRRYGYRRIHVLLRREGWQANHKRIWRLYSLAGLSVRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWGPTKQA
1285237..1285398                   hypothetical protein; D560_1357                                                      N/A                 MLAAQLCGLGTCIGFLEHADDLLFRKSFLHCHSFGNGLYIDFVLITGSRSVHR
complement(1285384..1285932)       hypothetical protein; D560_1358                                                      N/A                 MLLMRDQGPSRRFEGDSMALLDLRKLRSPQVSSLIRQKMNSRARLASSDDRVVKILEWYALSAGTGHIIEGDAAHNWRFVEHELASAPPDADLPSLEYPFALQPIVDPMRREITSFEFLIRSQSGGSPEQLFTGLAPAQRYLADLESKASAFQLARRLSLDGVKLSVNLFPMSLIGAVSAVD
complement(1285923..1286153)       sensors of blue-light using FAD family protein; D560_1359                            N/A                 MLSTLIYRSRAIGAIGPQALQELLALAKQRNASLSVTGILLFDGIHFVQLLEGSDYAVAELLMPYSAILGMTMSCF
complement(1286703..1289156)       PHAGE_Bacill_G_NC_023719: gp252; D560_1360; phage(gi593777708)                       2.80e-132           MSDQQNTTPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHEMEFRQGERVAALAVTGTTDKRGTEVRFLADPVIFNNIEYHYEILAKRLRELSFLNNGVKIRLVDQRQGKEENFAFSGGVKGFVEYINRAKTVLHANVFAVSTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVRPAVEDAVARSLETWLLEHPNDAKSLCGKIVEAARAREAARKAREMTRRKSVLEGAGLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIASEQIATLITALGTGIGPDFNIEKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVTRGHIYIAQPPLYKVKVGREERYLKDEVEEAKFMLQLALKDAELLPRQGATPIAGEALGELARQYVLADAVISRLARVFDVPALSALAEGVEINLDDQANAEVSAKRLHDALHDATDLNGVEVVAEFLEEHDKYRLVIRRMHHGNVRISIIDADFVRGADYGILTKSAQTFLGLIGPGAIVARGEGDKRKEQFVSDFREAMQWLRNEAERGLSKQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNIDA
1289170..1289181                   attR                                                                                 N/A                 AAAAAGGCGGCC
complement(1289236..1290345)       PHAGE_Rhizob_16_3_NC_011103: p081; D560_1361; phage(gi195546611)                     1.37e-50            MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVGADNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPTVAQPENWDVSLSMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRLAHCATEADGIAERHEVIVPRKTVLEMQRLLEDSDEAVSIDVAPGQIRFRFGDVELVSKLVEGKFPDFSRVIPTNYTRHFSVSREALQGSLQRAAILTTDKFKGVRLQLGENVMKISSSNAEQEEAQEEIDIDYGYEALDVGFNVSYLLDVLANVKVENVQWSVMPDANASALITLAGDDQFKYVVMPMRI
complement(1290348..1291805)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; D560_1362; phage(gi169257280)     7.98e-06            MKEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEEQAVLRVAAPNRFKLDWVRKNFSHQIEALATEWYQRPVQVQFELPSHSATPRMSMTPRASAPSTAVPAQAAAPQVAPAMPPTAARVEVAPPPAPPVQVSAAADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDILNVDVCKEALKDLLSVSNGQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDVRAKQAELNHTLHVLEQTLKG
1293123..1293134                   attR                                                                                 N/A                 TGGCGGCACGCC

#### region 4 ####
2912848..2912859                   attL                                                                                 N/A                 GCGCGGGAGCGC
2925139..2925915                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; D560_3145; phage(gi371496158)        8.52e-22            MENTAQAAKSKIEVKNLNFYYGKFHAIRNVNMSIRENKVTAFIGPSGCGKSTLLRTFNRMFELYPGQRAEGEIILDGENLLTSKTDISLIRAKVGMVFQKPTPFPMSIYDNIAFGVRLFERLSKGEMDERVEWALSKAALWNEVKDKLHQSGNSLSGGQQQRLCIARGVAIKPEVLLLDEPCSALDPISTAKIEELIAELKHEYTVVIVTHNMQQAARCSDYTAYMYLGELMEFGATDQIFVKPTRKETEDYITGRFG
2926032..2926108                   tRNA                                                                                 N/A                 CGGGGCGTAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGTGAGTTCGAATCCCACCGCCCCGACCA
2926743..2927252                   hypothetical protein; D560_3147                                                      N/A                 MTSALFNSSVPVLKQLLSALSDVLKKAEDQATLKNIDPDAYLGARLFPDMFPLIRQVQIAADFAKGISSRLAGADVPVWENTETSFADLQALIAKTLAHVESFTPEQFAQSDTREIVLRPGTPKERILTGSTYLLHYGLPQFFFHVTTTYAILRHNGVEIGKRDYMGQY
2927425..2927436                   attL                                                                                 N/A                 GCTGGACAAGGC
2927611..2928198                   PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; D560_3148; phage(gi17546158)     1.77e-69            MRIREIAHTRVHYGYRRVHVMLRREGYRDNHKRVYRLYREQGLSLRHKRPKRNKSAQRRQPEAVAQAINDIWSMDFVMDQLFDGRRLRALTLVDNYSRECLAIDIGQNLRGGDVVATLGRVCALRGLPRVIKTDNGSEFISKAMDKWAYENGVEIDFSRPGKPTDNAQCESFNGRFRQEGNPPAKAVRSEVEFSR
complement(2928330..2929100)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; D560_3149; phage(gi557307613)     8.41e-65            MNLQHNRIEQICDVLKLERIGSEWPAMAQQCAREDASHGDFLERLLGIENDARIERQRAALMKIATLPSVKTIEDYDFAFASGAPRAQIQELAALSFIERAENVVFLGPSGVGKSHLAQALAYRAVMAGIKTRFLTAADLMMQLATAHKQDRLQQYFNRAIIGPRLLVIDEIGYLPFGREEANLFFNVVAQRYERTSIIVTSNLPFSQWASCFSEDQTLTAALLDRLLHHAHIVQIAGESYRLKDKRKAGNIKIRN
complement(2929097..2930107)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; D560_3150; phage(gi557307612)     2.98e-36            MLTQEQAVEIKVMARRGVSIREMAKQLGCSRNTIRRYLREAGAQQYKPREARTTKLDPYKDYLHGRIEAARPHWIPAAVLLREIQELGYPGGVTQLKEFLGGYKHQEPEPVVRFETPPGKQMQADFTHIRRGRDPLMAFVATLGYSRSSWVRFTTDERADTWFGCLRQAFIYFGGVPQHVLFDNAGAIITERDAYGPGQHRWHNGLLAVAQEFGFTPRVCQPYRAKTKGKVERFNGYLKGSFCVPLAATLKQAGLRFDVTAANAHVGRWLTEVADQRLHGTTRERPAKRLQEERLALLQLPAQHGMLVPATSHRPVPRESFQHPLSVYNELLEVRA
2930142..2930426                   PROPHAGE_Xantho_306: ISxac2 transposase; D560_3151; phage(gi21244663)                3.02e-33            MGQIYSDAVGQYYIGADIEAIKRAEAGLAVPELCRELGISSATFYKWRSKFGGMDVSMMSRMKELEAENARLRKMYVEERLKAELRAEALEKKW
2930447..2931247                   PROPHAGE_Xantho_306: ISxac2 transposase; D560_3152; phage(gi21244662)                1.07e-141           MAQHMVRERGISVRLACEVVGISQTCYRYVCKRSTENDEIADWLMRLTDSHRSWGFGLCYLYLRNVKGYSWNHKRIYRIHRDLELNLRIKPRKRLVRQAPEPLTVPNQLNHVWSMDFMHDQLTDGRSIRLFNVIDDFNREALGIEIDFSLPSERVIRSLKQIIGWRGKPLAIRCDNGPEYLSDAITKWAGQWGIKLEYIQPGKPQQNAYVERFNRTVRYEWLSQYHWEDLDHVQRAATEWMWSYNHERPNMALGGYTPKQRLAMAA
2931632..2931643                   attR                                                                                 N/A                 GCTGGACAAGGC
2931713..2932534                   PROPHAGE_Xantho_33913: IS1477 transposase; D560_3153; phage(gi77747809)              1.10e-88            MTERSMGVTRACGLVGISRSLFAYESTRSGDAALTERMKEMAVEKRRYGYRRIHVLLRREGWQANHKRIWRLYSLAGLSVRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
2932589..2933278                   PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; D560_3154; phage(gi100066)        1.29e-63            MCSTFKVLAVGAVLARVARGEDDLSRPMRLSAADIVAHSPVTQQRLNEGMTLGQLCDAALVVGDNTAANLLLSTIGGPPGVTAYARSLGDAVTRLDRLETALNDATPGDDRDTTSPVAMAENLRQLVLGDALPGPERERVRDGLLHCQTGKGRLRAGLPAAWTFGHRTGAGGHGTCNDIGIAWPPSAGPVVISAYLTESPLPLPERERVLAEAGRIVVHGLTSARLQAG
2935797..2935808                   attR                                                                                 N/A                 GCGCGGGAGCGC

#### region 5 ####
3039063..3039137                   attL                                                                                 N/A                 AGGTTCATCGCGGAATAGCGTGGAGCCGTGCTTGATTGCCGTTACGCTTGATCCTTGATTTTTCAAGGATCAAGG
3039467..3039533                   attL                                                                                 N/A                 CAGGCCAAACGCGAGGCGGTCAGGACATTAATGACCGAGCGCAGCATGGGTGTTACCCGGGCCTGTG
3053051..3053332                   PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: integrase; D560_3290; phage(gi971749621)       2.81e-11            MGTFRKRGKTWRAEISKAGIRESKSFDTKREAQEWVASRETEILTTAVGGIALQTVAQVLHRYSDEVSPRNKGHRCLFKLPPVIASNLGAVLG
3053858..3054124                   PROPHAGE_Xantho_306: ISxac2 transposase; D560_3291; phage(gi21244663)                1.86e-41            MKKSKFTDSQIIEAIKRAEAGLAVPELCRELGISSATFYKWRSKFGGMDVSMMSRMKELEAENARLRKMYVEERLKAELRAEALEKKW
3054145..3054945                   PROPHAGE_Xantho_306: ISxac2 transposase; D560_3292; phage(gi21244662)                1.07e-141           MAQHMVRERGISVRLACEVVGISQTCYRYVCKRSTENDEIADWLMRLTDSHRSWGFGLCYLYLRNVKGYSWNHKRIYRIHRDLELNLRIKPRKRLVRQAPEPLTVPNQLNHVWSMDFMHDQLTDGRSIRLFNVIDDFNREALGIEIDFSLPSERVIRSLKQIIGWRGKPLAIRCDNGPEYLSDAITKWAGQWGIKLEYIQPGKPQQNAYVERFNRTVRYEWLSQYHWEDLDHVQRAATEWMWSYNHERPNMALGGYTPKQRLAMAA
complement(3055339..3055569)       hypothetical protein; D560_3293                                                      N/A                 MLAAQLCGLGTCIGFLEHADDLLFRKSFLHCHSFGNGLYIDFVLITGSRSRARSNHLNRRGKRNQSENNAWKVYAG
3055557..3055838                   PROPHAGE_Xantho_33913: IS1477 transposase; D560_3294; phage(gi77747809)              1.82e-12            MPQARNLRGNVLQLEGEVRWHDGVGRSEAQGAGAGEQQAQEAVGRVDAGQGGASGSAKPKVVSPQAKREAVRTLMTERSMGVTRACVSTPVEN
complement(3055894..3056664)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; D560_3295; phage(gi557307613)     8.41e-65            MNLQHNRIEQICDVLKLERIGSEWPAMAQQCAREDASHGDFLERLLGIENDARIERQRAALMKIATLPSVKTIEDYDFAFASGAPRAQIQELAALSFIERAENVVFLGPSGVGKSHLAQALAYRAVMAGIKTRFLTAADLMMQLATAHKQDRLQQYFNRAIIGPRLLVIDEIGYLPFGREEANLFFNVVAQRYERTSIIVTSNLPFSQWASCFSEDQTLTAALLDRLLHHAHIVQIAGESYRLKDKRKAGNIKIRN
complement(3056661..3057671)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; D560_3296; phage(gi557307612)     2.98e-36            MLTQEQAVEIKVMARRGVSIREMAKQLGCSRNTIRRYLREAGAQQYKPREARTTKLDPYKDYLHGRIEAARPHWIPAAVLLREIQELGYPGGVTQLKEFLGGYKHQEPEPVVRFETPPGKQMQADFTHIRRGRDPLMAFVATLGYSRSSWVRFTTDERADTWFGCLRQAFIYFGGVPQHVLFDNAGAIITERDAYGPGQHRWHNGLLAVAQEFGFTPRVCQPYRAKTKGKVERFNGYLKGSFCVPLAATLKQAGLRFDVTAANAHVGRWLTEVADQRLHGTTRERPAKRLQEERLALLQLPAQHGMLVPATSHRPVPRESFQHPLSVYNELLEVRA
3057964..3058548                   PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; D560_3297; phage(gi17546158)     8.06e-68            MRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQVKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
complement(3058881..3058956)       tRNA                                                                                 N/A                 GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAGGTCGGGAGTTCGATCCTCCTCCGCTCCACCA
complement(3059019..3059795)       exodeoxyribonuclease III; D560_3299                                                  N/A                 MQLATWNVNSLNVRLPQVIAWLADNPVDALCIQELKLADDKFPLEAFTQIGYHAAWAGQKTYNGVAILTREPGQAMVRNIPGFDDPQQRVIAVTLPTPAGEVRIICAYCPNGQSVGSDKYAYKLEWFTALHRWLQEELRAYPRLAILGDYNVAPADEDVHNPEKWEGQVLVSEPERAALKSLLDLGLTDAFRLFEQPEKSFTWWDYRMFAFRRNAGLRIDHILLSDALKHTCTACVIDKAPRATNSPRITPRSSPHST
complement(3060060..3060197)       hypothetical protein; D560_3300                                                      N/A                 MTERAGKPANPMPTRGTRARRLSRRNALESMLESLPASATGSGLT
3060923..3060989                   attR                                                                                 N/A                 CAGGCCAAACGCGAGGCGGTCAGGACATTAATGACCGAGCGCAGCATGGGTGTTACCCGGGCCTGTG
3060953..3061774                   PROPHAGE_Xantho_33913: IS1477 transposase; D560_3301; phage(gi77747809)              1.51e-88            MTERSMGVTRACGLVGISRSLFAYESTRSGDAALTERMKEMAVAKRRYGYRRIHVLLRREGWQANHKRIWRLHSLAGLSVRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
3068509..3068583                   attR                                                                                 N/A                 AGGTTCATCGCGGAATAGCGTGGAGCCGTGCTTGATTGCCGTTACGCTTGATCCTTGATTTTTCAAGGATCAAGG

#### region 6 ####
3101687..3101766                   attL                                                                                 N/A                 AATCGCCAACCCCCCAGTTCACTCAAGGAGCCCGGCCGGATGAACACCCATAAGCATGCCCGATTGACCTTCCTACGTCG
3115440..3116660                   PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; D560_3355; phage(gi145708108)     0.0                 MLDRKTIERLGGWEGYRVERVVWPEGESRTVTIYLKPSARTMHCEHCGNRCRQVHETTTRRVRDLPLMALRVTLVVPRRRVWCEQCGGPHLERLSWLGRYQRVTDRLAEAVSQLLESSNILAVARFFQLGWHTVKALDKALLRRAIQEPDWSQIHYLAMDEFALHKGHRYATVVVDPIRRQVLWIGDGRSRETARAFFEQLPTGVAQQIRAVAIDMTTAYELEIQANCPNAEIVYDLFHVVAKYGREVIDRVRVDQANQLRHDKPARRVIKSSRWLLLRNRKNLDPCQSVKLDELLQANQPLLTAYLMRDELKQLWFYQHPGYARQAWDHWLQQAQGSGIAALAHFALKLKAYLHGILSRCRHRLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRSAFPGIPR
complement(3116736..3117857)       receptor ligand binding region family protein; D560_3356                             N/A                 MQGIQYAKKCLGVFATLAMVGSAVAADTPLRLGFIESITGPGAAYGEAHFKGTRLAVDMINADGGVNGKPIEIFAEDDKSDPTVGINSAKKLITQRKVNVMAGSSASLVTIAFSRENEKAKVPLVVGVAGSPTITKQGYQHVWRVNVTDNQLDLKAVEHFFKDGGKRRFAFLAENSDYGKPPTKSSADYIRSLGGEVVAYEEYNRGETDFKAQLSNIRKQNPEVLLVHGYYTEGSIIARQVKELGINAQLIVNMGQGVPKFAELAGAAAEGVVFPTNWAEGADPRHAPFEKAFKEKYGVNASAFDAAAYAAVQTIAEAARRGGGNGSADIQKGLPMLIGFETLLGPIQWDAANQNDGKVLLAKFERGQIIPAK
complement(3117895..3118608)       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; D560_3357; phage(gi371496158)        7.25e-17            MLKLNNISARYGRIEALKGCSLEIGKGEFVTLIGANGAGKSTMLKAILGLNRPSQGSIDFDGRAITGASTESIIRSGISIVPEGRRIFPEFTVAENLAIGEQIRNATKGEIEADLERIVEQFPRLKERWSQRAGTMSGGEQQMVAIGRALMSRPRLLLLDEPSLGLAPLVVAELMEKLKEIHRAGTTIFLVEQNVTLALQTAQRGYLMETGRIVGADSSEALLASDTVRKAYLGIDD
complement(3118619..3119839)       PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; D560_3358; phage(gi145708108)     0.0                 MLDHKTIERLGGWEGYRVERVVWPEGESRTVTIYLKPSARTMHCEHCGNRCRQVHETTTRRVRDLPLMALRVTLVVPRRRVWCEQCGGPHLERLSWLGRYQRVTDRLAEAVSQLLESSNILAVARFFQLGWHTVKALDKALLRRAIQEPDWSQIHYLAMDEFALHKGHRYATVVVDPIRRQVLWIGDGRSRETARAFFEQLPTGVAQQIRAVAIDMTTAYELEIQANCPNAEIVYDLFHVVAKYGREVIDRVRVDQANQLRHDKPARRVIKSSRWLLLRNRKNLDPCQSVKLDELLQANQPLLTAYLMRDELKQLWFYQHPGYARQAWDHWLQQAQGSGIAALAHFALKLKAYLHGILSRCRHRLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRSAFPGIPR
complement(3119922..3120476)       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; D560_3359; phage(gi371496158)        7.72e-08            MHQINRLGVARTFQHVMVFPDLTLVENVMIGRQARTKAGVFASVLRTPGERRERAASRARAIELLDDVGLADKADELAGSLPYGEQRQLDIARALATDPQIILLDEPAGGLNLQERLALKALVRKLHGKGYTVVLIEHDIRLVMELCSHIVVLNYGTKIVDDTPDAVQQDKQVIAAYLGEGAKK
3120622..3121248                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; D560_3360; phage(gi52430457)     4.51e-32            MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPAICCTSTSRSWDVSSALATGSRATDAIPLRGPAGTSSSWPSMTTPAWPSPTSTPTSASPAPSSSSRTQWPTTSAWA
3121221..3121571                   PROPHAGE_Mesorh_MAFF303099: transposase; D560_3361; phage(gi13474791)                9.93e-42            MAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELSIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
complement(3121733..3122659)       branched-chain amino acid transport system / permease component family protein; D560_3362     N/A                 MNRKYLIGIAVVVLLAVPALLDDPFVTHLSIRAATYAIVVMGLTLFVGCTGQISLGHAAYFGLAAYVSGMLAKAGVPYILAALGATAATGLVGALVGLVVLRTSGHYLALASIAVAIIIQTLIKNASITGGPSGLTAVPPASFFGIELNGGLAYYYYVLAIVGLGLLILHRVVASRTGDALQAIANNELAAQSLGIPVFRYKVLSFTISVMFAAFAGTLLVHYDGFVDPERLGTHVSILFLIMAFVGGIGSLPGALLGAFSLTIMEEYTQEFGEYNVLIYGLTLAVVILFMPKGLISLVHRLSAREGK
complement(3122673..3123545)       branched-chain amino acid transport system / permease component family protein; D560_3363     N/A                 MSAFLQQLLYGLSVGSTYVLIALGITLVYRGMDLINFAQGEIFMAGAFMGYVFHVDLALPIWLALPCAMASGLLLGAMLERVFLRRIENSSPLTLFMMTVALFILLRSAAQLIFGASAYRFPPFSERVIEIGGVQIGMQYLLIIAVSLVMMAALYWLLTKTKIGLSARAVAQDRTAARMMGINVSRVNCFIYALSALLGTVAGIVYAPVAVLSFDMGNLIMLKGFTAALLGGLGLVSGAVFGGYVLGIIEQFGTLALSSAYKDMVSFSILLLIILLKPNGILSKKVVKKV
3123708..3124655                   PHAGE_Burkho_phi1026b_NC_005284: gp58; D560_3364; phage(gi38707948)                  7.69e-05            MELRHLRHFVVAAEQESIASAARILCMVQPALTRSIQTLEESVGAQLFVRHARGVKLTAAGRQCYQDATRLLQEAAQMRSNAVRASEGVLGNLHLAISPQHAWLPLICRMLGQFRDEHSLVTLMLDMLQSGRQLDGIHRGDLDAGFMFMRPRHDSSFAGLLVHNEHLVLAVPENSPYAKSPPKRLSELSGEPYIGTPKASSFHFNDFVENEYRRLNFQPRTVQMGSNFLVMLGLVAAGMGIAVVPGVSRFMHPRGIVFHNVPDLDSQLELELVWRSNDNSPVLARFLDVARRACAEGGVGERDWAPHREGAMTSI
3126114..3126193                   attR                                                                                 N/A                 AATCGCCAACCCCCCAGTTCACTCAAGGAGCCCGGCCGGATGAACACCCATAAGCATGCCCGATTGACCTTCCTACGTCG

#### region 7 ####
3218207..3218668                   PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; D560_3473; phage(gi588498309)     3.58e-37            MSIIDNRKATHDYFIEDRYEAGIVLQGWEVKAIRAGRVQLKESYVIVRDGELYLLGMHVSPLATASTHIHPDAVRTRKLLLKAEEIHKLIGKVEQRGFTLVPLNLHYKNGRIKLDFALGRGKKLYDKRDTAREKDWERERERVMKHDTRRRDD
3218767..3219717                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; D560_3474; phage(gi52430457)     2.15e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDEHFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3219816..3220442                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; D560_3475; phage(gi52430457)     4.51e-32            MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPAICCTSTSRSWDVSSALATGSRATDAIPLRGPAGTSSSWPSMTTPAWPSPTSTPTSASPAPSSSSRTQWPTTSAWA
3220328..3220339                   attL                                                                                 N/A                 GCCATCGATGAC
3220415..3220765                   PHAGE_Spirop_SkV1_CR2_3x_NC_009987: hypothetical protein; D560_3476; phage(gi160688404)     1.39e-07            MAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3220777..3221916                   PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; D560_3477; phage(gi100150)       9.55e-25            MLLMTALASLIGLCVLGSLWRSGMPGIREAMSGHVTTILAMLLMAQQAWAPQWLGILVANMLYALGGGLFVLGVRRFLGQGVSWRLMLASVGVFVVGLAFYTYVTPDVGARIVLASLIYTVLLIVLVWSVWVSRRERFAYGHIFMLCLASAGIVGHATRLVIYALGLDAVPDLLTPTRLNVVFLSLGVVVMPSLTLGLIMMIHDRMLIVREREANTDFLTGVMSRKAWWHAALEMGQHARDTGRPMALLVLDIDHFKKVNDSMGHAAGDAVLRHFAVVAGALLRPGDALGRLGGEEFIAAMPDLSVLEAQALAARMLAVLGTMPCQYGDRQLRYTFSGGVAAWDGVESLTVAMERADRALYRAKAGGRSRVDLAYPEAA
complement(3221913..3222863)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; D560_3478; phage(gi52430457)     3.36e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
complement(3223008..3223910)       PROPHAGE_Escher_Sakai: FtsH protease regulator HflK; D560_3479; phage(gi15834404)     1.80e-09            MLVVVVVLALLVVIKAIAIVPQQHAWVVERLGKFDRVLSPGADFVIPFIERVAYKHSLKEIPLDVPSQVCITRDNTQLQVDGVLYFQVTDAMRASYGSSNYISAITQLSQTTLRSVIGKLELDRTFEERDFINTTIVASLDEAALNWGVKVLRYEIKDLTPPAEILRAMQAQITAEREKRALIAASEGRRQEQINIATGEREAAIARSEGEKQAQINKAQGEAAAVLAIAEATAKAITQVGDAVRQPGGMEAVNLKVAERYVEAFGEVAKEGNTLILPSNLSDVGGLVASAMTIVKSTRT
complement(3223965..3224396)       hypothetical protein; D560_3480                                                      N/A                 MWIWFGLAAVALIGEVASGTFYLLLVALGLAAAGLVAWGGLALEWQLLACALIALLGLLVLRRRGVLKKREIDASRNADVNLDIGQTVSVEAWSATGEARVQYRGASWQAQLAAGQPRQSGLHVITEIQGAVLVLAPKSHPAR
3224531..3225268                   glutamine amidotransferase class-I family protein; D560_3481                         N/A                 MPLPLPILILHTGDPDAGLASHHGSYAEMIRRAAGLARSEVHVVAVHEGQSPEAPSRYRAALITGSPAMVTDHEDWSEACALWLRSAAEAGLPMFGICYGHQLLAHALGGRVDYNPAGRELGTHEITLSAAAQDDPVTAGLPQRLPAQMMHAQSVITPPGGSIVLASSPMDAHQMLRLRPGVYSTQFHPEFQADFVRDHILHHGDAYAREGLDTAALSAGVSATPQACGLLARFVAHYAASQRTA
complement(3225348..3227633)       PHAGE_Bacill_G_NC_023719: gp139; D560_3482; phage(gi593777598)                       1.24e-11            MISQLSGAGVRVPGGFATTAQAFRDFLTASGLDKRIADRLSTLNPEDVRELAVAGAEIRQWIIDAPFSAEFEQAIRDSFAKLDADGKGSFAVRSSATAEDLPDASFAGQQETFLNVVGIDDVLDKIRHVFASLYNDRAISYRVHKGYAHAEVALSAGVQRMVRSDKGSAGVMFTIDTESGFEEVVFITSSYGLGETVVQGAVNPDEFYVFKHALEAGHYPILSRRIGSKLIKMEFDPERPEGRAVRTVDVPVSERNRYSLTDDEVIELARYAVIIEKHYQRPMDIEWGRDGVDGKIYILQARPETVKSQQSGNDVQLRYRLKATGHVLATGRAIGQKIGAGPVRIVADVSEMDKVQPGDVLVTDMTDPNWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATDILKEGQPVTVSCAEGDEGRIYDGLIETEVEEVRRGSMPPIDVKIMMNVGNPQLAFDFAQIPNSGVGLARLEFIINNNIGIHPKAVLDYPNVDGELKQAVESAARGHASPRAFFVEKLAEGVATTGAAFWPKSVIVRMSDFKSNEYRKLVGGSRYEPEEENPMLGFRGASRYIAEDFAECFRMECEALKKVRDEMGLTNVEIMVPFVRTVGQARKVVELLAAHGLKRGENGLRLIMMCEVPSNAILAEQFLEHFDGFSIGSNDMTQLTLGLDRDSGMELLAADFDERDDAVKFMLRRAIQACLAADKYVGICGQGPSDHPDFAQWLKDEGILSMSLNPDTVVDTWQQLAKG
3232374..3232385                   attR                                                                                 N/A                 GCCATCGATGAC

#### region 8 ####
3673404..3673415                   attL                                                                                 N/A                 ACATCGGGTCGA
3678234..3678300                   attL                                                                                 N/A                 AGCAAATCATCGGCGTGCTCAAGGAAGCCGATGCAGGTGCCAAGCCCGCAGAGTTGTGCCGCAAGCA
3678511..3679332                   PROPHAGE_Xantho_33913: IS1477 transposase; D560_3958; phage(gi77747809)              1.90e-89            MTERSMGVTRACGLVGISRSLFAYESTRSGDAALTERMKEMAVAKRRYGYRRIHVLLRREGWQANHKRIWRLYSLAGLSVRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
3679582..3680235                   PHAGE_Cronob_ENT39118_NC_019934: protein umuD; D560_3959; phage(gi431811072)         3.07e-16            MATKLTDRQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKGPEPSAPSQALLPHPALAQLLLPLVGRVAAGSPILAAEHVEREVGVDPGLFAQAPDYLLKVRGMSMRDAGILEGDLLAVKKAAEARNGQIVVARLGDDVTVKRLQRHGSRIELLPENPEFAPIVLSPDDEFALEGIAVGLIRTHSLH
3680351..3681571                   PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; D560_3960; phage(gi145708108)     0.0                 MLDRKTIERLGGWEGYRVERVVWPEGESRTVTIYLKPSARTMHCEHCGNRCRQVHETTTRRVRDLPLMALRVTLVVPRRRVWCEQCGGPHLERLSWLGRYQRVTDRLAEAVSQLLESSNILAVARFFQLGWHTVKALDKALLRRAIQEPDWSQIHYLAMDEFALHKGHRYATVVVDPIRRQVLWIGDGRSRETARAFFEQLPTGVAQQIRAVAIDMTTAYELEIQANCPNAEIVYDLFHVVAKYGREVIDRVRVDQANQLRHDKPARRVIKSSRWLLLRNRKNLDPCQSVKLDELLQANQPLLTAYLMRDELKQLWFYQHPGYARQAWDHWLQQAQGSGIAALAHFALKLKAYLHGILSRCRHRLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRSAFPGIPR
complement(3681622..3684051)       ATP-dependent protease La; D560_3961                                                 N/A                 MSASQTLPSDPIDLPLLPLRDVVVFPHMVIPLFVGRPRSIRALEVAMEAGKSIMLVAQKSAGKDDPTPEDVYDIGCVASILQMLKLPDGTVKVLVEGSQRARIDSIQDADSHFTCQVTPIAPDATAGPEAEALRRAIVAQFEQYVKLNKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQKQKMLEIVPTAERLEGLLAQLETEIDILQVEKRIRGRVKKQMEKSKRDYYLNEQVKAIQKELGEGEEGADLEELEKKIIAAHMPKEARKKADAELKKLKLMSPMSAEATVVRNYIDTIINLPWKKKSKINNSIANAERVLDDDHYGLEKVKERILEYLGVQQRVDKVKAPILCLVGPPGVGKTSLGQSIAKATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQNMSKVAVRNPLFLLDEIDKLGMDFRGDPSSALLEVLDPEQNHTFQDHYIEVDFDLSDVMFVATSNTLNIPPALLDRMEVIRLSGYTEEEKIHIGSDHLLPKLMKNNGVKENELTVEESALRDIVRYYTREAGVRSLEREVGKICRKVVKQLLTAKDKGEPETGPVVVNAENLDAYLGVRRYTFGMAEKENQIGQVTGLAWTEVGGDLLTIEVADMPGKGNIQRTGSLGDVMKESVEAARTVVRSRARRLGFADSVFEKHDMHVHVPEGATPKDGPSAGIAITTAMVSALSRIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTVLIPEENVKDLAEIPDNVKNCLEIVPVRWIDKVLEMALERLPEPLADEEPVKETIVSKPVESGDPVLKH
complement(3684217..3685515)       PHAGE_Bacill_G_NC_023719: gp258; D560_3962; phage(gi593777714)                       8.58e-163           MPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAIRSELPTPVEIKSFLDQYVIGQTGPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFDGLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEAEPEDLVRFGLIPELVGRLPVVATLDELDEAALVQILTEPKNALVKQFQKLFAMEGAELDIRPDALTAIARKALKRKTGARGLRSILESALLDTMYDLPSQGNVSRAVLDGNAIEGGGKPLLIYADEGAESAKAGQGEVRDAAA
complement(3685709..3686272)       PHAGE_Bacill_G_NC_023719: gp257; D560_3963; phage(gi593777713)                       2.47e-40            MQRFTDFYAAMYGGASVTPTGLGYIPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGRPATFRSRPRKFSTCASASTASWPKIPVSRSSASP
complement(3686275..3687585)       trigger factor; D560_3964                                                            N/A                 MQPVVETLSGLERRVDLAISVADVEKEVQAQLKRVARTAKVPGFRPGKAPMAMLERSHGPSIRYDVINSQVGRAFEQAVEGAKLRVAGSPSLEPKTEGVDEATLAFSATFEVYPEVAVPDLSGLAVTRFETEVSDAEVNKTLDVLRKQRATYETREGRAAQDDDRVILDFAGTIDGVPFEGGKAEDFPFVLGQGRMLPEFEEAARGLKAGETKVFPLSFPEDYQGKEVAGKTAEFTITVKEVAEAVLPAVDAEFAKSLGQADADVEKLKADIRSNIEREVKVRSQGRTKTSVMDSLVDAAKFDVPKALVDNDVQGRIAQAREELKQRGVPNAENMPMPAEVFAAESERRVRLGLLVSELVKQAQLQAKPEQVRARIEEFAQNYEQPAQVVSYYLSDRQRRAEIEAIVLEDNVVAYVLEKAKVTDEKVPFDQLMGMA
3687813..3688352                   PHAGE_Caulob_CcrColossus_NC_019406: UPF0114 protein; D560_3965; phage(gi414088293)     1.15e-32            MNPQQPPRLGILPALIFSSRWLQLPLYLGLIVAQGVYVFLFLKELWHLVSHTNSFGEMDIMLLVLGLIDVVMISNLLVMVIVGGYETFVSRLRLEGHPDQPEWLNHVNASVLKVKLAMAIIGISSIHLLRTFIEAGNLGSDNARFTETGVMWQTIIHVVFILSAVGIAYVDRLTSSADH
3688449..3688793                   PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; D560_3966; phage(gi145708108)     4.16e-52            MLDRKTIERLGGWEGYRVERVVWPEGESRTVTIYLKPSARTMHCEHCGNRCRQVHETTTRRVRDLPLMALRVTLVVPRRRVWCEQCGGPHLERLSWLGRYQRVTDRLAEVTCSP
3688859..3688925                   attR                                                                                 N/A                 AGCAAATCATCGGCGTGCTCAAGGAAGCCGATGCAGGTGCCAAGCCCGCAGAGTTGTGCCGCAAGCA
3688914..3689501                   PROPHAGE_Xantho_33913: IS1477 transposase; D560_3967; phage(gi77747809)              6.79e-24            MPQARNLRGNVLQLEGEVRWHDGVGRSEAQGAGAGEQQAQEAVGRVDAGQGGASGSAKPKVVSPQAKREAVRTLMTERSMGVTRACGLVGISRSLFAYESTRSGDAALTERMKEMAVAKRRYGYRRIHVSADVILTHRVGVNLTHLGDDGGLLAADNVDSGASSGDQGNGASRRQHSGDGQAAGLLTQHDQAVSA
3689617..3690393                   PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; D560_3968; phage(gi557307612)     2.79e-23            MLLREIQELGYPGGVTQLKEFLSGYKHQEPEPVVRFETPPGKQMQADFTHIRRGRDPLMAFVATLGYSRSSWVRFTTDERADTWFGCLRQAFIYFGGVPQHVLFDNAGAIITERDAYGPGQHRWHNGLLAVAQEFGFTPRVCQPYRAKTKGKVERFNGYLKGSFCVPLAAPLKQAGLRFDVTAANAHVGRWLTEVADQRLHGTTRERPAKRLQEERLALLQLPAQHGMLVPATSHRPVPRESFQHPLSVYNELLEVRA
3690390..3691160                   PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; D560_3969; phage(gi557307613)     8.41e-65            MNLQHNRIEQICDVLKLERIGSEWPAMAQQCAREDASHGDFLERLLGIENDARIERQRAALMKIATLPSVKTIEDYDFAFASGAPRAQIQELAALSFIERAENVVFLGPSGVGKSHLAQALAYRAVMAGIKTRFLTAADLMMQLATAHKQDRLQQYFNRAIIGPRLLVIDEIGYLPFGREEANLFFNVVAQRYERTSIIVTSNLPFSQWASCFSEDQTLTAALLDRLLHHAHIVQIAGESYRLKDKRKAGNIKIRN
3691290..3691301                   attL                                                                                 N/A                 CTGGCGGCTGTA
3691321..3691905                   PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; D560_3970; phage(gi17546158)     2.25e-68            MRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
complement(3691873..3692364)       hypothetical protein; D560_3971                                                      N/A                 MPSSSSCQSSDVLDFWRHAGPQRWFARDVAFDREFRERFLEAHFAAARGELFDWEGSADGVLALLVLLDQFPRNAFRGTGHMFATDGLALAVARRAVAHGLDREVDTELRAFIYLPYEHAENIDAQQEGVELMTHLGGETLRFAIIHRDLPPDLVRHRHRAQG
complement(3692474..3692677)       PHAGE_Lactoc_bIL312_NC_002671: Csp; D560_3972; phage(gi13095918)                     4.10e-21            METGVVKWFNAEKGYGFITPESGGKDLFAHFSEIQSNGFKTLEENQRVSYVTAMGPKGPQATKIQII
complement(3692995..3693315)       hypothetical protein; D560_3973                                                      N/A                 MEIISSQTGEFDSGISLQTTVDGIPFGVYIVLGVPDLDSIADFVPPEALSDGASIHAASVDTVDGAQEQIDEVLENLNPADVVVFFCADVDCFAAALDLLGLPIEE
3694046..3694315                   transposase family protein; D560_3974                                                N/A                 MAQCSQPETSIAGVALSHGVNANLVHKWIRQAERQAPVAPAFVPVALPAVPSSGRHIEIRLSRGPAQATVQWPVSEAGACVAWLREWLR
3694312..3694647                   PHAGE_Stx2_c_1717_NC_011357: transposase; D560_3975; phage(gi209447152)              2.27e-07            MIRVDAIWLATEPLDMRAGTETALARVVAVFGSARPHHAYCFANRRANRMKVLVHDGIGVWLAARRLNRGKFVWADALRGPHVAVDSEQWQALVLGLPWQHVGGAGAISVL
3694710..3696281                   PHAGE_Stx2_c_1717_NC_011357: transposase; D560_3976; phage(gi209447153)              3.49e-101           MSTASLDHLDAQQLRALAERLMGEVAARDAQIAAHDAVVAERDRVLHFKQTHIDQLMQELALYKRWRYGKRSEQLSPAQASLLEETMDADMAAIEEEVNALREAISTKPAPSQAPRRMRLPAELPRTDIHHEPASTTCRCGCGLKRIGEDVSEKLDYLPGVFTVERHIRGKWVCEHCETLTQVPVPAQVIDKGIPTAGLLAQVLVAKFADHLPLYRQEGIFARAGLALPRSTLGEWVGVCGLRLQPLVDALKAEVLGKPVLHADETPVQMLNPGAGKTHRAYLWAYTPTSFDSLRAVLYDFAPSRAGEHCRTFLQDWRGKLVTDDYVGYKAGFAAGIKELGRMAHARRKFHDLHASHQSQIAGEALDLFGALYGVERDVADLPADKRRRIRQDRARPIAETLHRWLIAQRQRVPDGSGTARAIDYSLKRWEALTRYLDDGDAPIDNNWVENQIRPWAIGRSNWLFAGSLHGGQRAAAIMSLIQSARLNGHDPYAYLKDVLTRLPTQKNSQIAELLPHRWQPAA
3696414..3696425                   attR                                                                                 N/A                 CTGGCGGCTGTA
3698834..3698845                   attR                                                                                 N/A                 ACATCGGGTCGA
