gi|00000000|ref|CP007494.1|  Bordetella holmesii ATCC 51541, complete genome. 3699674, gc%: 62.69%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
172377..172388                     attL                                                                                 N/A                 CGCCCGGCCGGC
complement(175084..175938)         PROPHAGE_Shigel_301: serine protease; D560_0189; phage(gi24114232)                   2.60e-08            BordetellaholmesiiATCC51541MRYHLIHAAGSQADSFALNNSQVDIGAYRYQLALNQDGTQADDWYLSTSRQSMSETTRNAVMLANVTPTIWNSELFILRSRLGELRGQAPSNSVWGKYITGKNRVTNNVAYDQTMNGFMVGADRQFDLQTARLFVGGLFSYSDSDLKADDSRGKVDSYALGMYTTWLHDSGYYVDGVVKVNRFKTDNDARFNAGTSKANDKTTGVGVSIEAGKHIVIDSFFVEPYLQLAAFRGGKTKYGYSNGVQVEADSVKSVSAEAGLTLGKTFTLDSGALIKPYARIALNH
complement(175962..176192)         PROPHAGE_Xantho_33913: truncated IS1477 transposase; D560_0190; phage(gi21232570)     1.35e-25            BordetellaholmesiiATCC51541MENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
complement(176197..176784)         PROPHAGE_Xantho_33913: IS1477 transposase; D560_0191; phage(gi77747809)              1.81e-49            BordetellaholmesiiATCC51541MTERSMGVTRACGLVGISRSLFAYESTRSGDAALTERMKEMAVAKRRYGYRRIHVLLRREGWQANHKRIWRLYSLAGLSVRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWGLPSRRKAVVYSAG
177358..177822                     PHAGE_Bacill_G_NC_023719: gp350; D560_0192; phage(gi593777806)                       5.27e-19            BordetellaholmesiiATCC51541MLRDALRERVRGGGLALCLFDINNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAALSAPSASAALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRAKQAGKNRLHLIASRTAGA
complement(177838..177984)         hypothetical protein; D560_0193                                                      N/A                 BordetellaholmesiiATCC51541MAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIEPPVISQEG
178123..178608                     PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; D560_0194; phage(gi658307728)     8.03e-09            BordetellaholmesiiATCC51541MFASASIQAIKAGKQRQTRRIVKPQPPPAATLWYCDPAHAERWIAATARPDDATPAQTVSKWLVCPYGKPGDLIDLAHESGQPFGRAILMGVRIQRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWGERYGARAWAANPWVWVLEFRLLNQNGH
178881..179195                     hypothetical protein; D560_0195                                                      N/A                 BordetellaholmesiiATCC51541MKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVAPAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPRYYKGHRHYDRGHRGHRGHRGHWRD
complement(179265..179417)         hypothetical protein; D560_0196                                                      N/A                 BordetellaholmesiiATCC51541MVNRNSHTRPHNGWWKASSAPRRWLDAMRSDKPAEGQTAAPAAKVPAEQA
complement(179383..179619)         hypothetical protein; D560_0197                                                      N/A                 BordetellaholmesiiATCC51541MIGDFRVRCTVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVSYQDREDAERTSQQIFERINGVRFNGEPEFAHASA
complement(179910..181265)         PHAGE_Bacill_G_NC_023719: gp287; D560_0198; phage(gi593777743)                       3.24e-09            BordetellaholmesiiATCC51541MLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQALPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGVSSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPEHSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQNKPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP
complement(181272..182690)         PHAGE_Bacill_G_NC_023719: gp70; D560_0199; phage(gi593777538)                        3.27e-95            BordetellaholmesiiATCC51541MRVGSARVFFLLSMSNDLFASDPPHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDGQQIRFETEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAYAADEQYFPDGLNPTFYRPTDRGWKLKSSRSWHSWMSLTPRNAPGNGSGATAAAVNANPY
191591..191602                     attR                                                                                 N/A                 CGCCCGGCCGGC

#### region 2 ####
1265382..1265393                   attL                                                                                 N/A                 TGGCGGCACGCC
complement(1276064..1276840)       PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; D560_1346; phage(gi17546158)     1.03e-64            BordetellaholmesiiATCC51541MPQARNLRGNVLQLEGEVRWHDGVGRSEAQGAGAGEQQAQEAVGRVDAGQGGASGSAKPKVVSPQAKREAVRTLMTERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
1276917..1277681                   short chain dehydrogenase family protein; D560_1347                                  N/A                 BordetellaholmesiiATCC51541MPFLWERTLHRFRTNHGEQVKGIATTFAREGANVVVADINEAGGKRVAEAINNAGGRAVFVRADVSRSDDVAALLAATIKAFGGLDTVVNNAGTTHRNRPMLEVEEEEFDRIYAINVKSIFLTAKHMVPHFRAHGGGSFINIASTAAIRPRPGLTWYNGSKGAVVTTSKSMAAELGPDNIRVNCVNPVIGATGLLADFMGVPDTPENRKRFLGTIPLGRFSTPQDIANACLYLASDEAAFITGTCLEVDGGRCV
complement(1277845..1278240)       thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; D560_1348      N/A                 BordetellaholmesiiATCC51541MWAAQYLRFDRPGHWLTSGGAGTMGYGLPAAIGAQIAHPDKTVVCVSGDASVLMNIQELSTAMQHCAPVKVVLCNNGYMGMVRQWQELIHGGRYSHSYNASLPDFVALARAFGWGAARVEHPDELDAALAQ
complement(1278212..1279384)       thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein; D560_1349      N/A                 BordetellaholmesiiATCC51541MLPLYDALHAEPRLRHVLVRHEQAAVHAAEGYARSTGRTGVVFVTSGPGMANTTSGLLDAMCDSIPVLCVSGQVATGAIGTDAFQECDAIGISRSVTKWNTQIRRCEDVADVVGRAFTLTRQGRPGPVLVDFPKDVQLARPCGEHIEPSSAQVAALRARRQAGKTALRLPAGALRRAAAMIAQARRPVFYGGGGLINSGSQACEVFTELVRKTGSPCTLTLMGLGAFPASDPQFVGMLGMHGTLEANLAMHHADLVVCIGARFDDRITGKLSEFCPHARKIHVDIDPASINKVVRVDAALVGDCLPMLQALSAELDALSMPAQRLTDWWQRIEGWRKRDCLAWPGLAAPARRHFASATDGPAQRRAECPRCHRIDRRGPASDVGCAIPAF
1279644..1280123                   asnC family protein; D560_1350                                                       N/A                 BordetellaholmesiiATCC51541MNLDKFDLAILKALQDNARANLTDIGQAVGLSSTPCWNRIKRMETAGVIRGYTVDLDPAKLGYTDTVIVHVTLENHSEETLYEFGRALAEIPEVLEAFLVSGDYDYYIRIAVRDTRDYERLLRERLYRIPGIRHSKSGFVLRSLKEARLPLNLPPAQSS
complement(1280111..1281037)       bestrophin, RFP-TM, chloride channel family protein; D560_1351                       N/A                 BordetellaholmesiiATCC51541MIVRPRPSALALLFILRGSVLPRIAGKLLFMIVAGCIIAAIHAAGYFNPGHLSAVPFSLFGLALSVFLGFRNNVCYDRWWEARKQWGELIVQLRALSRETRVAWDTPLPVEDADVQRQIRRLIAFPHALAARLRQQSEIDAVRPWLDTGDLARLEGRRNVPDALLGLVSQTYREALRAGRFGEVIYQGLMLRLAACGAVQAACERIRFTPTPFAYSLLLHRTAWIFCLLLPFGLVGTLGSIMPLAVAIIAYTFFGLDALGDELEEPFGLDDNDLPLNAMARLTAIDLLESMGQTELPEPLVPQRYQLD
1281187..1281681                   SET domain protein; D560_1352                                                        N/A                 BordetellaholmesiiATCC51541MRRSKLHGNGVFAARKIPAGTRIIEYGGQRISAAEADRRHPTNPDDPFHTFFFALSSGKVIDGGDQGNDARWINHSCTPNCEAQEGRHGKRVYIVALRDISRGEELSYDYGLVLDGRITKALKQGYGCRCGTENCRGTMLALPKKKGSSRNSVEPCLIAVTLDP
1281707..1282927                   PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; D560_1353; phage(gi145708108)     0.0                 BordetellaholmesiiATCC51541MLDRKTIERLGGWEGYRVERVVWPEGESRTVTIYLKPSARTMHCEHCGNRCRQVHETTTRRVRDLPLMALRVTLVVPRRRVWCEQCGGPHLERLSWLGRYQRVTDRLAEAVSQLLESSNILAVARFFQLGWHTVKALDKALLRRAIQEPDWSQIHYLAMDEFALHKGHRYATVVVDPIRRQVLWIGDGRSRETARAFFEQLPTGVAQQIRAVAIDMTTAYELEIQANCPNAEIVYDLFHVVAKYGREVIDRVRVDQANQLRHDKPARRVIKSSRWLLLRNRKNLDPCQSVKLDELLQANQPLLTAYLMRDELKQLWFYQHPGYARQAWDHWLQQAQGSGIAALAHFALKLKAYLHGILSRCRHRLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRSAFPGIPR
1282948..1282959                   attL                                                                                 N/A                 AAAAAGGCGGCC
1283368..1283991                   PHAGE_Synech_S_SKS1_NC_020851: 3,4-dihydroxy-2-butanone 4-phosphate synthase; D560_1354; phage(gi472340887)     5.93e-41            BordetellaholmesiiATCC51541MRFERALHQLRLGRSIILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGQTLDKLELAPMVQRNQSRYATAFTVSIEAASGVSTGVSAVDRVTTIRAAIAPGAQAGDVVSPGHVFPLRAQAGGVLARRGHTEGSVDLARLAGLPPAGVLCELMNADGTMMRGAALERYAAAHGLVALTIAELADHLRATQPEAVLAA
complement(1284204..1284434)       PROPHAGE_Xantho_33913: truncated IS1477 transposase; D560_1355; phage(gi21232570)     1.35e-25            BordetellaholmesiiATCC51541MENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
complement(1284464..1285027)       PROPHAGE_Xantho_33913: IS1477 transposase; D560_1356; phage(gi77747809)              5.76e-49            BordetellaholmesiiATCC51541MTERSMGVTRVCGLVGISRSLFAYESTRSGDAALTERMKEMAVAKRRYGYRRIHVLLRREGWQANHKRIWRLYSLAGLSVRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWGPTKQA
1285237..1285398                   hypothetical protein; D560_1357                                                      N/A                 BordetellaholmesiiATCC51541MLAAQLCGLGTCIGFLEHADDLLFRKSFLHCHSFGNGLYIDFVLITGSRSVHR
complement(1285384..1285932)       hypothetical protein; D560_1358                                                      N/A                 BordetellaholmesiiATCC51541MLLMRDQGPSRRFEGDSMALLDLRKLRSPQVSSLIRQKMNSRARLASSDDRVVKILEWYALSAGTGHIIEGDAAHNWRFVEHELASAPPDADLPSLEYPFALQPIVDPMRREITSFEFLIRSQSGGSPEQLFTGLAPAQRYLADLESKASAFQLARRLSLDGVKLSVNLFPMSLIGAVSAVD
complement(1285923..1286153)       sensors of blue-light using FAD family protein; D560_1359                            N/A                 BordetellaholmesiiATCC51541MLSTLIYRSRAIGAIGPQALQELLALAKQRNASLSVTGILLFDGIHFVQLLEGSDYAVAELLMPYSAILGMTMSCF
complement(1286703..1289156)       PHAGE_Bacill_AR9_NC_031039: DCTP pyrophosphatase; D560_1360; phage(gi100024)         2.87e-117           BordetellaholmesiiATCC51541MSDQQNTTPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHEMEFRQGERVAALAVTGTTDKRGTEVRFLADPVIFNNIEYHYEILAKRLRELSFLNNGVKIRLVDQRQGKEENFAFSGGVKGFVEYINRAKTVLHANVFAVSTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVRPAVEDAVARSLETWLLEHPNDAKSLCGKIVEAARAREAARKAREMTRRKSVLEGAGLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIASEQIATLITALGTGIGPDFNIEKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVTRGHIYIAQPPLYKVKVGREERYLKDEVEEAKFMLQLALKDAELLPRQGATPIAGEALGELARQYVLADAVISRLARVFDVPALSALAEGVEINLDDQANAEVSAKRLHDALHDATDLNGVEVVAEFLEEHDKYRLVIRRMHHGNVRISIIDADFVRGADYGILTKSAQTFLGLIGPGAIVARGEGDKRKEQFVSDFREAMQWLRNEAERGLSKQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNIDA
1289170..1289181                   attR                                                                                 N/A                 AAAAAGGCGGCC
complement(1289236..1290345)       PHAGE_Salini_M1EM_1_NC_042348: hypothetical protein; D560_1361; phage(gi100037)      1.85e-29            BordetellaholmesiiATCC51541MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVGADNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPTVAQPENWDVSLSMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRLAHCATEADGIAERHEVIVPRKTVLEMQRLLEDSDEAVSIDVAPGQIRFRFGDVELVSKLVEGKFPDFSRVIPTNYTRHFSVSREALQGSLQRAAILTTDKFKGVRLQLGENVMKISSSNAEQEEAQEEIDIDYGYEALDVGFNVSYLLDVLANVKVENVQWSVMPDANASALITLAGDDQFKYVVMPMRI
complement(1290348..1291805)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; D560_1362; phage(gi169257280)     9.27e-06            BordetellaholmesiiATCC51541MKEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEEQAVLRVAAPNRFKLDWVRKNFSHQIEALATEWYQRPVQVQFELPSHSATPRMSMTPRASAPSTAVPAQAAAPQVAPAMPPTAARVEVAPPPAPPVQVSAAADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDILNVDVCKEALKDLLSVSNGQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDVRAKQAELNHTLHVLEQTLKG
1293123..1293134                   attR                                                                                 N/A                 TGGCGGCACGCC

#### region 3 ####
3039063..3039137                   attL                                                                                 N/A                 AGGTTCATCGCGGAATAGCGTGGAGCCGTGCTTGATTGCCGTTACGCTTGATCCTTGATTTTTCAAGGATCAAGG
3039467..3039533                   attL                                                                                 N/A                 CAGGCCAAACGCGAGGCGGTCAGGACATTAATGACCGAGCGCAGCATGGGTGTTACCCGGGCCTGTG
3053051..3053332                   PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: membrane-associated initiation of head vertex; D560_3290; phage(gi100034)     2.95e-15            BordetellaholmesiiATCC51541MGTFRKRGKTWRAEISKAGIRESKSFDTKREAQEWVASRETEILTTAVGGIALQTVAQVLHRYSDEVSPRNKGHRCLFKLPPVIASNLGAVLG
3053858..3054124                   PROPHAGE_Xantho_306: ISxac2 transposase; D560_3291; phage(gi21244663)                2.16e-41            BordetellaholmesiiATCC51541MKKSKFTDSQIIEAIKRAEAGLAVPELCRELGISSATFYKWRSKFGGMDVSMMSRMKELEAENARLRKMYVEERLKAELRAEALEKKW
3054145..3054945                   PROPHAGE_Xantho_306: ISxac2 transposase; D560_3292; phage(gi21244662)                1.24e-141           BordetellaholmesiiATCC51541MAQHMVRERGISVRLACEVVGISQTCYRYVCKRSTENDEIADWLMRLTDSHRSWGFGLCYLYLRNVKGYSWNHKRIYRIHRDLELNLRIKPRKRLVRQAPEPLTVPNQLNHVWSMDFMHDQLTDGRSIRLFNVIDDFNREALGIEIDFSLPSERVIRSLKQIIGWRGKPLAIRCDNGPEYLSDAITKWAGQWGIKLEYIQPGKPQQNAYVERFNRTVRYEWLSQYHWEDLDHVQRAATEWMWSYNHERPNMALGGYTPKQRLAMAA
complement(3055339..3055569)       hypothetical protein; D560_3293                                                      N/A                 BordetellaholmesiiATCC51541MLAAQLCGLGTCIGFLEHADDLLFRKSFLHCHSFGNGLYIDFVLITGSRSRARSNHLNRRGKRNQSENNAWKVYAG
3055557..3055838                   PROPHAGE_Xantho_33913: IS1477 transposase; D560_3294; phage(gi77747809)              2.12e-12            BordetellaholmesiiATCC51541MPQARNLRGNVLQLEGEVRWHDGVGRSEAQGAGAGEQQAQEAVGRVDAGQGGASGSAKPKVVSPQAKREAVRTLMTERSMGVTRACVSTPVEN
complement(3055894..3056664)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; D560_3295; phage(gi557307613)     9.77e-65            BordetellaholmesiiATCC51541MNLQHNRIEQICDVLKLERIGSEWPAMAQQCAREDASHGDFLERLLGIENDARIERQRAALMKIATLPSVKTIEDYDFAFASGAPRAQIQELAALSFIERAENVVFLGPSGVGKSHLAQALAYRAVMAGIKTRFLTAADLMMQLATAHKQDRLQQYFNRAIIGPRLLVIDEIGYLPFGREEANLFFNVVAQRYERTSIIVTSNLPFSQWASCFSEDQTLTAALLDRLLHHAHIVQIAGESYRLKDKRKAGNIKIRN
complement(3056661..3057671)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; D560_3296; phage(gi557307612)     3.46e-36            BordetellaholmesiiATCC51541MLTQEQAVEIKVMARRGVSIREMAKQLGCSRNTIRRYLREAGAQQYKPREARTTKLDPYKDYLHGRIEAARPHWIPAAVLLREIQELGYPGGVTQLKEFLGGYKHQEPEPVVRFETPPGKQMQADFTHIRRGRDPLMAFVATLGYSRSSWVRFTTDERADTWFGCLRQAFIYFGGVPQHVLFDNAGAIITERDAYGPGQHRWHNGLLAVAQEFGFTPRVCQPYRAKTKGKVERFNGYLKGSFCVPLAATLKQAGLRFDVTAANAHVGRWLTEVADQRLHGTTRERPAKRLQEERLALLQLPAQHGMLVPATSHRPVPRESFQHPLSVYNELLEVRA
3057964..3058548                   PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; D560_3297; phage(gi17546158)     9.36e-68            BordetellaholmesiiATCC51541MRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQVKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
complement(3058881..3058956)       tRNA                                                                                 N/A                 GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAGGTCGGGAGTTCGATCCTCCTCCGCTCCACCA
complement(3059019..3059795)       exodeoxyribonuclease III; D560_3299                                                  N/A                 BordetellaholmesiiATCC51541MQLATWNVNSLNVRLPQVIAWLADNPVDALCIQELKLADDKFPLEAFTQIGYHAAWAGQKTYNGVAILTREPGQAMVRNIPGFDDPQQRVIAVTLPTPAGEVRIICAYCPNGQSVGSDKYAYKLEWFTALHRWLQEELRAYPRLAILGDYNVAPADEDVHNPEKWEGQVLVSEPERAALKSLLDLGLTDAFRLFEQPEKSFTWWDYRMFAFRRNAGLRIDHILLSDALKHTCTACVIDKAPRATNSPRITPRSSPHST
complement(3060060..3060197)       hypothetical protein; D560_3300                                                      N/A                 BordetellaholmesiiATCC51541MTERAGKPANPMPTRGTRARRLSRRNALESMLESLPASATGSGLT
3060923..3060989                   attR                                                                                 N/A                 CAGGCCAAACGCGAGGCGGTCAGGACATTAATGACCGAGCGCAGCATGGGTGTTACCCGGGCCTGTG
3060953..3061774                   PROPHAGE_Xantho_33913: IS1477 transposase; D560_3301; phage(gi77747809)              1.76e-88            BordetellaholmesiiATCC51541MTERSMGVTRACGLVGISRSLFAYESTRSGDAALTERMKEMAVAKRRYGYRRIHVLLRREGWQANHKRIWRLHSLAGLSVRKRKRKRIAATERVVRPAAIAPNQSWSMDFVADGLAYGRRFRCLTIVDDYTRECLAIEVDTSLPGLRVAMVLQRLAEMRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYIESFNGKFRDECLNEHWFLSLRQAKSLIENWRVEYNTDRPHSALGYLTPAQFVQAHQKEGLLPLGSMSVPY
3068509..3068583                   attR                                                                                 N/A                 AGGTTCATCGCGGAATAGCGTGGAGCCGTGCTTGATTGCCGTTACGCTTGATCCTTGATTTTTCAAGGATCAAGG
