gi|00000000|ref|NC_000000|  Vibrio cholerae strain 2012EL-2176 chromosome 1, complete sequence. [asmbl_id: NC_000000].3043139, gc%: 47.75%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1036547..1036558                   attL                                                                                 N/A                 ACATACATAATA
complement(1036675..1037049)       PHAGE_Vibrio_CTX_NC_015209: CtxB; EN18_10485; phage(gi332672307)                     1.17e-88            MIKLKFGVFFTVLLSSAYANGTPQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN
complement(1037046..1037822)       PHAGE_Vibrio_CTX_NC_015209: CtxA; EN18_10490; phage(gi332672306)                     0.0                 MVKIIFVFFIFLSSFSYANDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL
complement(1037928..1039127)       PHAGE_Vibrio_CTX_NC_015209: Zot; EN18_10495; phage(gi332672305)                      0.0                 MSIFIHHGAPGSYKTSGALWLRLLPAIKSGRHIITNVRGLNLERMAKYLKMDVSDISIEFIDTDHPDGRLTMARFWHWARKDAFLFIDECGRIWPPRLTVTNLKALDTPPDLVAEDRPESFEVAFDMHRHHGWDICLTTPNIAKVHNMIREAAEIGYRHFNRATVGLGAKFTLTTHDAANSGQMDSHALTRQVKKIPSPIFKMYASTTTGKARDTMAGTALWKDRKILFLFGMVFLMFSYSFYGLHDNPIFTGGNDATIESEQSEPQSKATVGNAVGSKAVAPASFGFCIGRLCVQDGFVTVGDERYRLVDNLDIPYRGLWATGHHIYKDTLTVFFETESGSVPTELFASSYRYKVLPLPDFNHFVVFDTFAAQALWVEVKRGLPIKTENDKKGLNSIF
complement(1039124..1039408)       PHAGE_Vibrio_CTX_NC_015209: Ace; EN18_10500; phage(gi332672304)                      2.09e-61            MMDTLYDWLIDGFTWLVIKLGIMWIESKIFVIQFFWEMSQKVIDMFTIYPLIQQAIDMLPPQYSGFLFFLGLDQALAIVLQALMTRFALRALNL
complement(1039414..1040601)       PHAGE_Vibrio_CTX_NC_015209: hypothetical protein; EN18_10505; phage(gi332672303)     0.0                 MRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYKPRFSQGVSPNWPMCDLSGASAERCIYPYCPEGEECVPLPPSPPSDSPVDGLSSSFKSAFNQVYKNQSEMASTLNHVSGQVSHSQDMVQLNTKFHADRVLESVTAVNNRLGGQMEYLEEIRIDVWDTQREVRKAKDELYSRVAAVSYDVLYSELNVLRAIDELKDSLGGTVVPPNPDQPNPTPPDSSSPNYTGALNTISKKLNTLETISQQLDTMNTALSGRCSNPERCQFPIREAETELETAQQNLKQMINEKITQSALHQFKGSAAVPSFCSYVEAFGYNLCFDFSLFSENLHIIRMIVLAMAYILAAMLILFR
complement(1040708..1040956)       PHAGE_Vibrio_CTX_NC_015209: Cep; EN18_10510; phage(gi332672302)                      2.47e-49            MFSSLKNKLNTFKSTLSLGVFLLFSAFANQALAAADAGLVTEVTKTLGTSKDTVIALGPLIMGVVGAIVLIVTVIGLIRKAK
complement(1041092..1041448)       PHAGE_Vibrio_CTX_NC_015209: RstB; EN18_10520; phage(gi332672301)                     1.76e-81            MKSRFVVFGASHSEGVSKTGAPYLIPVLFVGKPIRQWKNDKGQCLTFGLQHQEVKFVSSDAMTRKLEQTAFPVLVTFDNEPDPEDPSRNLVIDYQVVCSLFDNVPGGKPLDKPQPIKS
complement(1041450..1042529)       PHAGE_Vibrio_CTX_NC_015209: RstA; EN18_10525; phage(gi332672300)                     0.0                 MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAMMERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLDLLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKAAQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISKHFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD
1042655..1042993                   PHAGE_Vibrio_CTX_NC_015209: RstR; EN18_10530; phage(gi332672299)                     1.65e-76            MKIKERLANQRKAINKTQAQMADEIGISLTSYKKYESGEGLPTMENLVKIADALEISIDELCGRWATDENQELMLRLKKIQQLDEEEQKAISMVLESMLIRHSTKSILNHGA
complement(1043505..1043729)       PHAGE_Vibrio_CTX_NC_015209: RstC; EN18_10535; phage(gi332672298)                     4.14e-48            MSLKPYTLMDVYDSLEDLNNMALYLRSGAYTDEIAHQVQNLICDKIIDLQGIVNFIRLSPSLNPQLKALTEPSL
complement(1043823..1044173)       PHAGE_Vibrio_CTX_NC_015209: RstB; EN18_10540; phage(gi332672297)                     6.35e-82            MKSRFVVFGASHSEGVSKTGAPYLIPVLFVGKPIRQWKNDKGQCLTFGLQHQEVKFVSSDAMTRKLEQTAFPVLVTFDNEPDPEDPSRNLVIDYQVVCSLFDNVPGGKPLDKPNKI
complement(1044175..1045254)       PHAGE_Vibrio_CTX_NC_015209: RstA; EN18_10545; phage(gi332672300)                     0.0                 MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAMMERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLDLLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKAAQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISKHFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD
1045380..1045718                   PHAGE_Vibrio_CTX_NC_015209: RstR; EN18_10550; phage(gi332672299)                     1.65e-76            MKIKERLANQRKAINKTQAQMADEIGISLTSYKKYESGEGLPTMENLVKIADALEISIDELCGRWATDENQELMLRLKKIQQLDEEEQKAISMVLESMLIRHSTKSILNHGA
complement(1046208..1046645)       hypothetical protein; EN18_10555                                                     N/A                 MNPCIFHYWLSVLEKRVLPRSGLEGKRWQGWYFDEGKLVTPLGHRLGAAQIEDQQNQINQTRAVYRQAHKVREHAKSGLHEAGESWFGWQFKGGFLVSPDERKIAADELYVMMVGYDAMTYAKAYKKPPIDTAKATVLNLETKCS
complement(1046785..1046952)       helicase; EN18_10560                                                                 N/A                 MQGHHTREDAKTTEATEQRLLQVFKRDKELSAALGVFERKLGIPEQETVIRICYD
complement(1047030..1047722)       DNA-binding protein; EN18_10565                                                      N/A                 MNLNQLTGADLMAARTHIGLSISAVAKLTGINRNTLSQFEQEKASLSGSEKKRLAGCYEERGYHFDEPQTTDETVLATRYDDARERLVDAAYDVNMNGLGEAVLALADASHDLLSMLARPMDVAQEEVELDAVELPESYLEMHNVLQRHFLADKAGQMQGKVGFFKEDADERSAKLIAYMEQQYLTLLHAEMPEVVSLERDSLDDDSDNARVLDALANWTFYDALKEMTV
complement(1047852..1048121)       hypothetical protein; EN18_10570                                                     N/A                 MGISHRKGISNKGLGKPYEMHKIHFATPIETIDTPNMSLSGRGLQEQTLDIDPLCLPQFDKVSPLSEVNVSVEPKPSNFTQTWVVGLTQ
complement(1048141..1048833)       PHAGE_Entero_Ike_NC_002014: replication initiation protein; EN18_10575; phage(gi9626233)     6.73e-26            MFKTLFHDLLESLKGEELELYNDSKIKQLLRDAYSTMTPKGNISYAKADRLFRFYMTLCDRGYQELKAHSSKATLHRNMRDLMAIGFSKADLQNLSEGERMPLAQVLNFNFDNQRPANYVEPVSPTAHIQDMSHLAVAYGVSKRLAHELGLAEDPIHNLKEKLGLKDDIDIDALIEGQSIPISPRRALSLVIWPDGEMILTEHDITPDLFTGGVNPVNHRNRKAANQPRG
complement(1048859..1049707)       PHAGE_Entero_fd_NC_025824: II; EN18_10580; phage(gi730977589)                        8.33e-41            MIDMFHINIPFKKDVIIEMGDCGFVDFAKLAEKTELKIACGNVEFSVVNDQKKVRTDDLYHPWSTIPSSYTDIACKVFDAEPRANVFWGYLQLKASPAKVMQGHNVYGSEDFRLCVEYLLDSLQKAQPELWELLDVGLAEMTRIDCTYSIKCANPDILRQTIKQMGNVSNRYIKPARNSDFETTLYFNRATKANPGAGRSFELCIYTKHDEIAHQLADLKRRARQGDSDRFNRIIDELSKPELQAFAANRLRFGACKETLHPETCWQRKPVAGYPTCRAVRG
1049884..1050435                   XRE family transcriptional regulator; EN18_10585                                     N/A                 MSEVSIADRIKKAIIDNGGYQNISDVTGISKSTLARMAANQTEPKLKDVMAISKATGVSLNYIAYGMLTEDEEESALNEKKMFNLILNLVNHVSREVEELRAKVGVNDPKGNLNARRTIDGLSKDITDSVTDGADINNLSPEALGIDSKEHIELLFDLLNEESKRRNSNLDTMLEPTQPHKSK
1050744..1051097                   PROPHAGE_Xantho_33913: ISxac3 transposase; EN18_10590; phage(gi21231087)             3.35e-08            MISSPHKLTGDIMTKRTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAAQAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKATALLMSDSLNNS
1051094..1051966                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EN18_10595; phage(gi41057343)     2.35e-145           MIIKKLKQSHSVKILCEVFNVHRSSYHYWLKRPALINAETIKLRSLISEAHAASNGSAGARTIADIVTNQGVKLSRYRATKLMRTLGLVSCQEPKHRYRKASQEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLSPDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCWDNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESERLYWENSKTVANFS
1054136..1054147                   attR                                                                                 N/A                 ACATACATAATA

#### region 2 ####
1399199..1399210                   attL                                                                                 N/A                 CCTTTGTTCTTT
complement(1405035..1405211)       PHAGE_Entero_P4_NC_001609: transcriptional regulator; EN18_12070; phage(gi9627517)     4.27e-13            MRFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR
1405355..1405831                   hypothetical protein; EN18_12075                                                     N/A                 MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRGTVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL
complement(1406061..1406627)       chemotaxis protein; EN18_12080                                                       N/A                 MIGDMVLGGKKGAAGAGSLSALGATPVYVVNMPNGGLGGPDVNFPDNKKPNKSLFNASNLANIPLIGWASYELADLTDSVLSSNFDGYREADAKFTTKMKAFFGDKEAQAQDVQYYGADPAKYEVKPMSPPEYMTGGYNRSPISTPSSYLAAQAGEMKLKVEVSDDRVKVTPTYLPKGFSVDPDTGIN
complement(1406753..1407625)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EN18_12085; phage(gi41057343)     2.35e-145           MIIKKLKQSHSVKILCEVFNVHRSSYHYWLKRPALINAETIKLRSLISEAHAASNGSAGARTIADIVTNQGVKLSRYRATKLMRTLGLVSCQEPKHRYRKASQEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLSPDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCWDNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESERLYWENSKTVANFS
complement(1407622..1407930)       PROPHAGE_Xantho_33913: ISxac3 transposase; EN18_12090; phage(gi21231087)             2.94e-08            MTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAAQAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKATALLMSDSLNNS
complement(1407973..1408932)       PHAGE_Rhizob_RHEph06_NC_027296: putative tail protein; EN18_12095; phage(gi848469511)     3.90e-28            MTTLATRSKAAFSMISSSAIAASRGIDTFGNRLLFITGAAAVGFERTFVKTAAEFERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEVTQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIATALGQAWTKGKLQSEEALQLLERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAAKEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDKVGRDLVEAFKSAAAAAREIKEVGEELWPVIREIGSMACSGIVNLVT
complement(1409148..1409507)       PHAGE_Vibrio_12B12_NC_021070: extracellular solute-binding protein family 7 protein; EN18_12100; phage(gi481019155)     1.46e-38            MAVMTFNLEDGFKVGDAQCHEVGLKELTPKDVFDAQLASEKIGILNGRPHAYTSDVQMGMELLCRQVEFIGNVQGPFSVKEILKLSSRDFATLQQKARELDDIMFSDDALEGLEARGRD
complement(1409556..1409927)       6-phospho-beta-glucosidase; EN18_12105                                               N/A                 MEHVYQLVDGIVFKGKLQKQVTLHPIDSVSYDLVEQLVEEQLQHIQNQADVVLVNDSHLQGLKGYMLLNESAASSISKIGDENVDLMFFDLCQLKISAQDWNVILTANLAIAEYYANQAAMLA
complement(1409988..1410566)       glyoxalase; EN18_12110                                                               N/A                 MSLSTLQAELASAKTEYEAKELEIRNLFSEKNTQERRLQTLVAQVAAKRKELSNALSQSSAETLTSELQSLESQYQACQTLINNISNYLTVKAGLDKKNASELVERAQKNLLNFIYNSIKSELKVLTDEQVELMKDFVVIEKLIRSELSDSVRQSYFLGCVFDELYGQLKGSDFTSHKEKMLKKYDAESSIG
complement(1410585..1410905)       transcriptional regulator; EN18_12115                                                N/A                 MAPTDNQRSLVISKLTPSAQVLYRALDEAIKQSAGKPDALKIVIELSEKLGGRTFYFSLGTVARRTQRNIDLFADHESGMSVRELSKKYKLSFVSVFNVIRKFKTS
complement(1410892..1411266)       PHAGE_Entero_Mu_NC_000929: Mor; EN18_12120; phage(gi9633507)                         5.66e-09            MLAIERAIPLVVDALSKDSGLFSFDDLESGDALYPELLSDVHDIFLGVIEDAGIEDNGLALHLVFKLMEYGNGVQFYLPKPDSIVKTIIKKMMKNDFNGSNYVELAKRYQCSTNHVRRVINGTH
1411813..1411824                   attR                                                                                 N/A                 CCTTTGTTCTTT
complement(1411846..1412079)       hypothetical protein; EN18_12125                                                     N/A                 MNNHHLSAAESHELATRVSALGAKQVLLILRQIQDQSLDSSMKNRGLIYERALRTKTEAGSTAKIGHALLDHHTRPH
complement(1412076..1412537)       hypothetical protein; EN18_12130                                                     N/A                 MNNQNDNGLLPFNVGELVSAVHFDCNDFDTADYIPSVQLRQDLHDKLGCAVSNLNSILSIYNQWKQGQLSCNWSAVSELTLRTQVVSGQFKTISQMCRNDRNGMVYNPLLNDGIPDLSKGLTPLECSELKALLDGLHPIELLQLLRHQKGSLV
complement(1412540..1413382)       PHAGE_Pseudo_B3_NC_006548: putative transposase B subunit; EN18_12135; phage(gi56692579)     6.32e-54            MLTQEAMKHFKLFRNPFINDIRAVRDIYMNEDSRYVLAAMKDVARNQGILAVVGDSGAGKSVLRRLLLDELHNDGDISVIQPKIIDKTRATAAGICDAIISDISSEAPKRSMEAKARQVERLLMTAFKGGQRHVLIIEEAHDLTIPVMKYLKRFWELEDGFSKLLGILLVGQTELFHRLDERRHYELREFIRRCMVIEVPPLDNDIEAYLKHKFERAGCEYERIMDDSAVPALKLRLQTRRNQSGSLVYPQVINNLVTKAMNLCASLGEDKVNEDIIKEL
complement(1413621..1415378)       PHAGE_Pseudo_B3_NC_006548: putative transposase A subunit; EN18_12140; phage(gi56692580)     7.16e-110           MNALELERAQYLKRLMSDLDRSGRGQKGVIVQAAMDHLCISKSKLYQELTDLGWTSGRKTRADNGDLALTKEETELLSNMIRQSKRESGKALMTVRDAVDIALANGELTRHVSESTVLRAFKRFRVHPDQLDMMETTMSQRSLFPNHAWQFDVSICVLYYLRGGKGLQVMSKDEFYKNKPKNLDRIVNERVLRYLATDHYSGAFFLRYYLAPGENTETITQFLLEAFCERDTGELMYGVPQILIWDAGSANIAHQTRHMLDMLEVKHIAHTPGRPWAKGQVESTHNLVERRFEGRLAFMTVQSIEELNRHAVQWSIGFQSLKEHSRHKNSRFGLWQTIRAEQLRLIKDVNLVKSMMQQTKPEVRKVRPNELSISFAPKGYASMDYSLAHIPHLIAGDEVKVFANPYKAPAIRVISVDDSGQEHTHEATPIERDAAGFNLLAPIIGAEHKSVRETDADHNRKRLDIQAWGTDNPRDIKKLRKGKVAAFDGRINPMADIEQQVVPSFMPRRGTVMSMEGQPLTEQKMSFIGALNRLQRRLNPTKEELAVMRKVLKQQYPDGMTDNELQVFTEQWEQKGNEHAQSATR
