gi|00000000|ref|NC_000000|  Vibrio cholerae strain TSY216 chromosome 1, complete sequence. [asmbl_id: NC_000000].3053204, gc%: 47.68%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1541309..1541320                   attL                                                                                 N/A                 ACATACATAATA
complement(1541437..1541811)       PHAGE_Vibrio_CTX_NC_015209: CtxB; EN12_07055; phage(gi332672307)                     1.18e-89            MIKLKFGVFFTVLLSSAYAHGTPQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN
complement(1541808..1542584)       PHAGE_Vibrio_CTX_NC_015209: CtxA; EN12_07060; phage(gi332672306)                     0.0                 MVKIIFVFFIFLSSFSYANDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL
complement(1542676..1543875)       PHAGE_Vibrio_CTX_NC_015209: Zot; EN12_07065; phage(gi332672305)                      0.0                 MSIFIHHGAPGSYKTSGALWLRLLPAIKSGRHIITNVRGLNLERMAKYLKMDVSDISIEFIDTDHPDGRLTMARFWHWARKDAFLFIDECGRIWPPRLTVTNLKALDTPPDLVAEDRPESFEVAFDMHRHHGWDICLTTPNIAKVHNMIREAAEIGYRHFNRATVGLGAKFTLTTHDAANSGQMDSHALTRQVKKIPSPIFKMYASTTTGKARDTMAGTALWKDRKILFLFGMVFLMFSYSFYGLHDNPIFTGGNDATIESEQSEPQSKATVGNAVGSKAVAPASFGFCIGRLCVQDGFVTVGDERYRLVDNLDIPYRGLWATGHHIYKDTLTVFFETESGSVPTELFASSYRYKVLPLPDFNHFVVFDTFAAQALWVEVKRGLPIKTENDKKGLNSIF
complement(1543872..1544156)       PHAGE_Vibrio_CTX_NC_015209: Ace; EN12_07070; phage(gi332672304)                      2.09e-61            MMDTLYDWLIDGFTWLVIKLGIMWIESKIFVIQFFWEMSQKVIDMFTIYPLIQQAIDMLPPQYSGFLFFLGLDQALAIVLQALMTRFALRALNL
complement(1544162..1545349)       PHAGE_Vibrio_CTX_NC_015209: hypothetical protein; EN12_07075; phage(gi332672303)     0.0                 MRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYKPRFSQGVSPNWPMCDLSGASAERCIYPYCPEGEECVPLPPSPPSDSPVDGLSSSFKSAFNQVYKNQSEMASTLNHVSGQVSHSQDMVQLNTKFHADRVLESVTAVNNRLGGQMEYLEEIRIDVWDTQREVRKAKDELYSRVAAVSYDVLYSELNVLRAIDELKDSLGGTVVPPNPDQPNPTPPDSSSPNYTGALNTISKKLNTLETISQQLDTMNTALSGRCSNPERCQFPIREAETELETAQQNLKQMINEKITQSALHQFKGSAAVPSFCSYVEAFGYNLCFDFSLFSENLHIIRMIVLAMAYILAAMLILFR
complement(1545456..1545704)       PHAGE_Vibrio_CTX_NC_015209: Cep; EN12_07080; phage(gi332672302)                      2.47e-49            MFSSLKNKLNTFKSTLSLGVFLLFSAFANQALAAADAGLVTEVTKTLGTSKDTVIALGPLIMGVVGAIVLIVTVIGLIRKAK
complement(1545840..1546199)       PHAGE_Vibrio_CTX_NC_015209: RstB; EN12_07090; phage(gi332672301)                     5.68e-84            MKSRFVVFGASHSEGVSSKTGAPYLIPVLFVGKPIRQWKNDKGQCLTFGLQHQEVKFVSSDAMTRKLEQTAFPVLVTFDNEPDPEDPSRNLVIDYQVVCSLFDNVPGGKPLDKPQPIKS
complement(1546201..1547280)       PHAGE_Vibrio_CTX_NC_015209: RstA; EN12_07095; phage(gi332672300)                     0.0                 MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAMMERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLDLLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKAAQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISKHFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD
1547406..1547744                   PHAGE_Vibrio_CTX_NC_015209: RstR; EN12_07100; phage(gi332672299)                     1.65e-76            MKIKERLANQRKAINKTQAQMADEIGISLTSYKKYESGEGLPTMENLVKIADALEISIDELCGRWATDENQELMLRLKKIQQLDEEEQKAISMVLESMLIRHSTKSILNHGA
complement(1548256..1548480)       PHAGE_Vibrio_CTX_NC_015209: RstC; EN12_07105; phage(gi332672298)                     4.14e-48            MSLKPYTLMDVYDSLEDLNNMALYLRSGAYTDEIAHQVQNLICDKIIDLQGIVNFIRLSPSLNPQLKALTEPSL
complement(1548574..1548924)       PHAGE_Vibrio_CTX_NC_015209: RstB; EN12_07110; phage(gi332672297)                     6.35e-82            MKSRFVVFGASHSEGVSKTGAPYLIPVLFVGKPIRQWKNDKGQCLTFGLQHQEVKFVSSDAMTRKLEQTAFPVLVTFDNEPDPEDPSRNLVIDYQVVCSLFDNVPGGKPLDKPNKI
complement(1548926..1550005)       PHAGE_Vibrio_CTX_NC_015209: RstA; EN12_07115; phage(gi332672300)                     0.0                 MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAMMERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLDLLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKAAQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISKHFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD
1550131..1550469                   PHAGE_Vibrio_CTX_NC_015209: RstR; EN12_07120; phage(gi332672299)                     1.65e-76            MKIKERLANQRKAINKTQAQMADEIGISLTSYKKYESGEGLPTMENLVKIADALEISIDELCGRWATDENQELMLRLKKIQQLDEEEQKAISMVLESMLIRHSTKSILNHGA
complement(1550959..1551396)       hypothetical protein; EN12_07125                                                     N/A                 MNPCIFHYWLSVLEKRVLPRSGLEGKRWQGWYFDEGKLVTPLGHRLGAAQIEDQQNQINQTRAVYRQAHKVREHAKSGLHEAGESWFGWQFKGGFLVSPDERKIAADELYVMMVGYDAMTYAKAYKKPPIDTAKATVLNLETKCS
complement(1551536..1551703)       helicase; EN12_07130                                                                 N/A                 MQGHHTREDAKTTEATEQRLLQVFKRDKELSAALGVFERKLGIPEQETVIRICYD
complement(1551781..1552473)       DNA-binding protein; EN12_07135                                                      N/A                 MNLNQLTGADLMAARTHIGLSISAVAKLTGINRNTLSQFEQEKASLSGSEKKRLAGCYEERGYHFDEPQTTDETVLATRYDDARERLVDAAYDVNMNGLGEAVLALADASHDLLSMLARPMDVAQEEVELDAVELPESYLEMHNVLQRHFLADKAGQMQGKVGFFKEDADERSAKLIAYMAQQYLTLLHAEMPEVVSLERDSLDDDSDNARVLDALANWTFYDALKEMTV
complement(1552603..1552872)       hypothetical protein; EN12_07140                                                     N/A                 MGISHRKGISNKGLGKPYEMHKIHFATPIETIDTPNMSLSGRGLQEQTLDIDPLCLPQFDKVSPLSEVNVSVEPKPSNFTQTWVVGLTQ
complement(1552892..1554406)       PHAGE_Entero_Ike_NC_002014: replication initiation protein; EN12_07145; phage(gi9626233)     2.07e-73            MGDCGFVDFAKLAEKTELKIACGNVEFSVVNDQKKVRTDDLYHPWSTIPSSYTDIACKVFDAEPRANVFWGYLQLKASPAKVMQGHNVYGSEDFRLCVEYLLDSLQKAQPELWELLDVGLAEMTRIDCTYSIKCANPDILRQTIKQMGNVSNRYIKPARNSDFETTLYFNRATKANPGAGRSFELCIYTKHDEIAHQLADLKRRARQGDSDRFNRIIDELSKPELQAFAANRLRFEGRAKKRFIQKHVGSANLWQVIRHAEQFEAKNGYRFCEWMFKTLFHDLLESLKGEELELYNDSKIKQLLRDAYSTMTPKGNISYAKADRLFRFYMTLCDRGYQELKAHSSKATLHRNMRDLMAIGFSKADLQNLSEGERMPLAQVLNFNFDNQRPANYVEPVSPTAHIQDMSHLAVAYGVSKRLAHELGLAEDPIHNLKEKLGLKDDIDIDALIEGQSIPISPRRALSLVIWPDGEMILTEHDITPDLFTGGVNPVNHRNRKAANQPRG
1554637..1555188                   XRE family transcriptional regulator; EN12_07150                                     N/A                 MSEVSIADRIKKAIIDNGGYQNISDVTGISKSTLARMAANQTEPKLKDVMAISKATGVSLNYIAYGMLTEDEEESALNEKKMFNLILNLVNHVSREVEELRAKVGVNDPKGNLNARRTIDGLSKDITDSVTDGADINNLSPEALGIDSKEHIELLFDLLNEESKRRNSNLDTMLEPTQPHKSK
complement(1556387..1556554)       helicase; EN12_07160                                                                 N/A                 MQGHHTREDAKTTEATEQRLLQVFKRDKELSAALGVFERKLGIPEQETVIRICYD
complement(1556632..1557324)       DNA-binding protein; EN12_07165                                                      N/A                 MNLNQLTGADLMAARTHIGLSISAVAKLTGINRNTLSQFEQEKASLSGSEKKRLAGCYEERGYHFDEPQTTDETVLATRYDDARERLVDAAYDVNMNGLGEAVLALADASHDLLSMLARPMDVAQEEVELDAVELPESYLEMHNVLQRHFLADKAGQMQGKVGFFKEDADERSAKLIAYMAQQYLTLLHAEMPEVVSLERDSLDDDSDNARVLDALANWTFYDALKEMTV
complement(1557454..1557723)       hypothetical protein; EN12_07170                                                     N/A                 MGISHRKGISNKGLGKPYEMHKIHFATPIETIDTPNMSLSGRGLQEQTLDIDPLCLPQFDKVSPLSEVNVSVEPKPSNFTQTWVVGLTQ
complement(1557743..1559257)       PHAGE_Entero_Ike_NC_002014: replication initiation protein; EN12_07175; phage(gi9626233)     2.07e-73            MGDCGFVDFAKLAEKTELKIACGNVEFSVVNDQKKVRTDDLYHPWSTIPSSYTDIACKVFDAEPRANVFWGYLQLKASPAKVMQGHNVYGSEDFRLCVEYLLDSLQKAQPELWELLDVGLAEMTRIDCTYSIKCANPDILRQTIKQMGNVSNRYIKPARNSDFETTLYFNRATKANPGAGRSFELCIYTKHDEIAHQLADLKRRARQGDSDRFNRIIDELSKPELQAFAANRLRFEGRAKKRFIQKHVGSANLWQVIRHAEQFEAKNGYRFCEWMFKTLFHDLLESLKGEELELYNDSKIKQLLRDAYSTMTPKGNISYAKADRLFRFYMTLCDRGYQELKAHSSKATLHRNMRDLMAIGFSKADLQNLSEGERMPLAQVLNFNFDNQRPANYVEPVSPTAHIQDMSHLAVAYGVSKRLAHELGLAEDPIHNLKEKLGLKDDIDIDALIEGQSIPISPRRALSLVIWPDGEMILTEHDITPDLFTGGVNPVNHRNRKAANQPRG
1559488..1560039                   XRE family transcriptional regulator; EN12_07180                                     N/A                 MSEVSIADRIKKAIIDNGGYQNISDVTGISKSTLARMAANQTEPKLKDVMAISKATGVSLNYIAYGMLTEDEEESALNEKKMFNLILNLVNHVSREVEELRAKVGVNDPKGNLNARRTIDGLSKDITDSVTDGADINNLSPEALGIDSKEHIELLFDLLNEESKRRNSNLDTMLEPTQPHKSK
1560348..1560701                   PROPHAGE_Xantho_33913: ISxac3 transposase; EN12_07185; phage(gi21231087)             3.35e-08            MISSPHKLTGDIMTKRTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAAQAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKATALLMSDSLNNS
1560698..1561570                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EN12_07190; phage(gi41057343)     2.35e-145           MIIKKLKQSHSVKILCEVFNVHRSSYHYWLKRPALINAETIKLRSLISEAHAASNGSAGARTIADIVTNQGVKLSRYRATKLMRTLGLVSCQEPKHRYRKASQEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLSPDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCWDNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESERLYWENSKTVANFS
1562427..1562438                   attR                                                                                 N/A                 ACATACATAATA

#### region 2 ####
1905105..1905116                   attL                                                                                 N/A                 CCTTTGTTCTTT
complement(1910941..1911117)       PHAGE_Entero_P4_NC_001609: transcriptional regulator; EN12_08660; phage(gi9627517)     4.27e-13            MRFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR
1911261..1911737                   hypothetical protein; EN12_08665                                                     N/A                 MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRGTVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL
complement(1911967..1912533)       chemotaxis protein; EN12_08675                                                       N/A                 MIGDMVLGGKKGAAGAGSLSALGATPVYVVNMPNGGLGGPDVNFPDNKKPNKSLFNASNLANIPLIGWASYELADLTDSVLSSNFDGYREADAKFTTKMKAFFGDKEAQAQDVQYYGADPAKYEVKPMSPPEYMTGGYNRSPISTPSSYLAAQAGEMKLKVEVSDDRVKVTPTYLPKGFSVDPDTGIN
complement(1912659..1913531)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EN12_08680; phage(gi41057343)     2.35e-145           MIIKKLKQSHSVKILCEVFNVHRSSYHYWLKRPALINAETIKLRSLISEAHAASNGSAGARTIADIVTNQGVKLSRYRATKLMRTLGLVSCQEPKHRYRKASQEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLSPDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCWDNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESERLYWENSKTVANFS
complement(1913528..1913836)       PROPHAGE_Xantho_33913: ISxac3 transposase; EN12_08685; phage(gi21231087)             2.94e-08            MTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAAQAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKATALLMSDSLNNS
complement(1913879..1914838)       PHAGE_Rhizob_RHEph06_NC_027296: putative tail protein; EN12_08690; phage(gi848469511)     3.90e-28            MTTLATRSKAAFSMISSSAIAASRGIDTFGNRLLFITGAAAVGFERTFVKTAAEFERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEVTQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIATALGQAWTKGKLQSEEALQLLERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAAKEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDKVGRDLVEAFKSAAAAAREIKEVGEELWPVIREIGSMACSGIVNLVT
complement(1915054..1915413)       PHAGE_Vibrio_12B12_NC_021070: extracellular solute-binding protein family 7 protein; EN12_08695; phage(gi481019155)     1.46e-38            MAVMTFNLEDGFKVGDAQCHEVGLKELTPKDVFDAQLASEKIGILNGRPHAYTSDVQMGMELLCRQVEFIGNVQGPFSVKEILKLSSRDFATLQQKARELDDIMFSDDALEGLEARGRD
complement(1915462..1915833)       6-phospho-beta-glucosidase; EN12_08700                                               N/A                 MEHVYQLVDGIVFKGKLQKQVTLHPIDSVSYDLVEQLVEEQLQHIQNQADVVLVNDSHLQGLKGYMLLNESAASSISKIGDENVDLMFFDLCQLKISAQDWNVILTANLAIAEYYANQAAMLA
complement(1915894..1916472)       glyoxalase; EN12_08705                                                               N/A                 MSLSTLQAELASAKTEYEAKELEIRNLFSEKNTQERRLQTLVAQVAAKRKELSNALSQSSAETLTSELQSLESQYQACQTLINNISNYLTVKAGLDKKNASELVERAQKNLLNFIYNSIKSELKVLTDEQVELMKDFVVIEKLIRSELSDSVRQSYFLGCVFDELYGQLKGSDFTSHKEKMLKKYDAESSIG
complement(1916491..1916811)       transcriptional regulator; EN12_08710                                                N/A                 MAPTDNQRSLVISKLTPSAQVLYRALDEAIKQSAGKPDALKIVIELSEKLGGRTFYFSLGTVARRTQRNIDLFADHESGMSVRELSKKYKLSFVSVFNVIRKFKTS
complement(1916798..1917172)       PHAGE_Entero_Mu_NC_000929: Mor; EN12_08715; phage(gi9633507)                         5.66e-09            MLAIERAIPLVVDALSKDSGLFSFDDLESGDALYPELLSDVHDIFLGVIEDAGIEDNGLALHLVFKLMEYGNGVQFYLPKPDSIVKTIIKKMMKNDFNGSNYVELAKRYQCSTNHVRRVINGTH
1917719..1917730                   attR                                                                                 N/A                 CCTTTGTTCTTT
complement(1917752..1917985)       hypothetical protein; EN12_08720                                                     N/A                 MNNHHLSAAESHELATRVSALGAKQVLLILRQIQDQSLDSSMKNRGLIYERALRTKTEAGSTAKIGHALLDHHTRPH
complement(1917982..1918443)       hypothetical protein; EN12_08725                                                     N/A                 MNNQNDNGLLPFNVGELVSAVHFDCNDFDTADYIPSVQLRQDLHDKLGCAVSNLNSILSIYNQWKQGQLSCNWSAVSELTLRTQVVSGQFKTISQMCRNDRNGMVYNPLLNDGIPDLSKGLTPLECSELKALLDGLHPIELLQLLRHQKGSLV
complement(1918446..1919288)       PHAGE_Pseudo_B3_NC_006548: putative transposase B subunit; EN12_08730; phage(gi56692579)     6.32e-54            MLTQEAMKHFKLFRNPFINDIRAVRDIYMNEDSRYVLAAMKDVARNQGILAVVGDSGAGKSVLRRLLLDELHNDGDISVIQPKIIDKTRATAAGICDAIISDISSEAPKRSMEAKARQVERLLMTAFKGGQRHVLIIEEAHDLTIPVMKYLKRFWELEDGFSKLLGILLVGQTELFHRLDERRHYELREFIRRCMVIEVPPLDNDIEAYLKHKFERAGCEYERIMDDSAVPALKLRLQTRRNQSGSLVYPQVINNLVTKAMNLCASLGEDKVNEDIIKEL
complement(1919527..1921284)       PHAGE_Pseudo_B3_NC_006548: putative transposase A subunit; EN12_08735; phage(gi56692580)     7.16e-110           MNALELERAQYLKRLMSDLDRSGRGQKGVIVQAAMDHLCISKSKLYQELTDLGWTSGRKTRADNGDLALTKEETELLSNMIRQSKRESGKALMTVRDAVDIALANGELTRHVSESTVLRAFKRFRVHPDQLDMMETTMSQRSLFPNHAWQFDVSICVLYYLRGGKGLQVMSKDEFYKNKPKNLDRIVNERVLRYLATDHYSGAFFLRYYLAPGENTETITQFLLEAFCERDTGELMYGVPQILIWDAGSANIAHQTRHMLDMLEVKHIAHTPGRPWAKGQVESTHNLVERRFEGRLAFMTVQSIEELNRHAVQWSIGFQSLKEHSRHKNSRFGLWQTIRAEQLRLIKDVNLVKSMMQQTKPEVRKVRPNELSISFAPKGYASMDYSLAHIPHLIAGDEVKVFANPYKAPAIRVISVDDSGQEHTHEATPIERDAAGFNLLAPIIGAEHKSVRETDADHNRKRLDIQAWGTDNPRDIKKLRKGKVAAFDGRINPMADIEQQVVPSFMPRRGTVMSMEGQPLTEQKMSFIGALNRLQRRLNPTKEELAVMRKVLKQQYPDGMTDNELQVFTEQWEQKGNEHAQSATR
