gi|00000000|ref|CP009351.1|  Bacillus thuringiensis HD1002, complete genome. 5491311, gc%: 35.25%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
41312..41325                       attL                                                                                 N/A                 CGGTAATGATTGGG
complement(49671..51218)           PHAGE_Thermo_THSA_485A_NC_018264: Recombinase; AS86_48; phage(gi397912662)           0.0                 [BacillusthuringiensisHD1002]
complement(51491..52294)           putative membrane protein; AS86_49                                                   N/A                 [BacillusthuringiensisHD1002]
complement(52450..52884)           PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; AS86_50; phage(gi115334657)      2.18e-47            [BacillusthuringiensisHD1002]
complement(52898..53335)           PHAGE_Geobac_GBSV1_NC_008376: immunity repressor protein; AS86_51; phage(gi115334658)     4.60e-32            [BacillusthuringiensisHD1002]
53485..53700                       PHAGE_Lister_vB_LmoS_188_NC_028871: XRE family transcriptional regulator; AS86_52; phage(gi971750831)     7.02e-12            [BacillusthuringiensisHD1002]
53735..53983                       hypothetical protein; AS86_53                                                        N/A                 [BacillusthuringiensisHD1002]
54074..54661                       helix-turn-helix family protein; AS86_54                                             N/A                 [BacillusthuringiensisHD1002]
54675..54896                       PHAGE_Geobac_E2_NC_009552: hypothetical protein; AS86_55; phage(gi158380391)         2.53e-06            [BacillusthuringiensisHD1002]
55080..55295                       PHAGE_Staphy_SpaA1_NC_018277: XRE family transcriptional regulator; AS86_57; phage(gi399498907)     1.03e-33            [BacillusthuringiensisHD1002]
complement(55292..55591)           PHAGE_Lactob_Lj928_NC_005354: putative major head protein; AS86_56; phage(gi41179318)     1.38e-05            [BacillusthuringiensisHD1002]
55775..56059                       PHAGE_Deep_s_D6E_NC_019544: hypothetical protein; AS86_58; phage(gi423262356)        1.05e-07            [BacillusthuringiensisHD1002]
56161..56337                       hypothetical protein; AS86_59                                                        N/A                 [BacillusthuringiensisHD1002]
56339..57289                       PHAGE_Geobac_E2_NC_009552: putative replication protein; AS86_60; phage(gi148747766)     1.96e-69            [BacillusthuringiensisHD1002]
57286..58608                       PHAGE_Geobac_GBK2_NC_023612: helicase; AS86_61; phage(gi589893809)                   2.97e-140           [BacillusthuringiensisHD1002]
58611..58799                       hypothetical protein; AS86_62                                                        N/A                 [BacillusthuringiensisHD1002]
58774..59136                       PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; AS86_63; phage(gi712912380)     5.31e-22            [BacillusthuringiensisHD1002]
59210..59401                       PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; AS86_64; phage(gi31415831)     6.73e-11            [BacillusthuringiensisHD1002]
59435..59617                       hypothetical protein; AS86_65                                                        N/A                 [BacillusthuringiensisHD1002]
complement(60442..61758)           PHAGE_Synech_S_CAM7_NC_031927: head assembly cochaperone with GroES; AS86_66; phage(gi100234)     2.46e-40            [BacillusthuringiensisHD1002]
complement(62927..63091)           PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; AS86_67; phage(gi31415836)     4.72e-13            [BacillusthuringiensisHD1002]
63347..63811                       PHAGE_Bacill_phiCM3_NC_023599: transcriptional regulator; AS86_68; phage(gi589892762)     3.65e-75            [BacillusthuringiensisHD1002]
63811..64353                       PHAGE_Bacill_phiCM3_NC_023599: integrase; AS86_69; phage(gi589892763)                3.50e-120           [BacillusthuringiensisHD1002]
complement(64476..64676)           PHAGE_Lactoc_bIL312_NC_002671: Csp; AS86_70; phage(gi13095918)                       1.33e-28            [BacillusthuringiensisHD1002]
complement(66201..66641)           rubrerythrin family protein; AS86_71                                                 N/A                 [BacillusthuringiensisHD1002]
66920..67141                       PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; AS86_72; phage(gi197261557)       1.29e-33            [BacillusthuringiensisHD1002]
67138..67410                       PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_73; phage(gi422934324)          9.00e-11            [BacillusthuringiensisHD1002]
67376..67711                       PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; AS86_74; phage(gi100004)     1.50e-39            [BacillusthuringiensisHD1002]
67862..68218                       PHAGE_Staphy_23MRA_NC_028775: hypothetical protein; AS86_75; phage(gi971742325)      3.13e-42            [BacillusthuringiensisHD1002]
68215..69870                       PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; AS86_76; phage(gi100006)     0.0                 [BacillusthuringiensisHD1002]
69981..71042                       PHAGE_Lister_LP_101_NC_024387: portal protein; AS86_77; phage(gi658607813)           4.49e-103           [BacillusthuringiensisHD1002]
71026..71799                       PHAGE_Paenib_PG1_NC_021558: peptidase S14 ClpP; AS86_78; phage(gi514231190)          1.63e-78            [BacillusthuringiensisHD1002]
71819..72982                       PHAGE_Lister_LP_101_NC_024387: major capsid protein; AS86_79; phage(gi658607815)     5.76e-83            [BacillusthuringiensisHD1002]
72995..73291                       PHAGE_Lister_LP_030_2_NC_021539: putative head-tail connector protein; AS86_80; phage(gi514051939)     5.07e-12            [BacillusthuringiensisHD1002]
73293..73643                       PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; AS86_81; phage(gi148747735)     3.84e-28            [BacillusthuringiensisHD1002]
73645..73989                       PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; AS86_82; phage(gi115334634)      7.34e-21            [BacillusthuringiensisHD1002]
74040..74321                       PHAGE_Geobac_GBSV1_NC_008376: aminopeptidase; AS86_83; phage(gi115334635)            5.34e-21            [BacillusthuringiensisHD1002]
74322..74909                       PHAGE_Geobac_GBSV1_NC_008376: major tail protein; AS86_84; phage(gi115334636)        9.30e-52            [BacillusthuringiensisHD1002]
74914..75276                       PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; AS86_85; phage(gi115334637)      3.80e-36            [BacillusthuringiensisHD1002]
75384..75491                       PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; AS86_86; phage(gi115334638)      4.65e-08            [BacillusthuringiensisHD1002]
80226..80239                       attR                                                                                 N/A                 CGGTAATGATTGGG

#### region 2 ####
325169..325186                     attL                                                                                 N/A                 ATTTATGACGGGATTAAA
complement(325212..326303)         PHAGE_Bacill_phIS3501_NC_019502: phage integrase; AS86_324; phage(gi422934298)       0.0                 [BacillusthuringiensisHD1002]
327111..328331                     PHAGE_Bacill_phiCM3_NC_023599: HTH transcriptional regulator; AS86_326; phage(gi589892737)     2.22e-92            [BacillusthuringiensisHD1002]
328591..328737                     hypothetical protein; AS86_328                                                       N/A                 [BacillusthuringiensisHD1002]
complement(328734..329078)         PHAGE_Bacill_phIS3501_NC_019502: transcriptional regulator XRE family protein; AS86_327; phage(gi422934302)     6.82e-22            [BacillusthuringiensisHD1002]
329248..329454                     PHAGE_Gordon_BaxterFox_NC_031226: hypothetical protein; AS86_329; phage(gi100044)     9.23e-07            [BacillusthuringiensisHD1002]
329520..329708                     PHAGE_Staphy_SpaA1_NC_018277: transcriptional regulator, pbsX; AS86_330; phage(gi399498897)     2.54e-27            [BacillusthuringiensisHD1002]
329729..330376                     PHAGE_Bacill_phIS3501_NC_019502: RNA-polymerase sigma-factor; AS86_331; phage(gi422934306)     8.52e-118           [BacillusthuringiensisHD1002]
330436..330591                     PHAGE_Staphy_SpaA1_NC_018277: phage related protein; AS86_332; phage(gi399498898)     1.46e-27            [BacillusthuringiensisHD1002]
330654..330956                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_333; phage(gi422934305)     1.25e-40            [BacillusthuringiensisHD1002]
330957..331220                     hypothetical protein; AS86_334                                                       N/A                 [BacillusthuringiensisHD1002]
331213..331407                     hypothetical protein; AS86_335                                                       N/A                 [BacillusthuringiensisHD1002]
331486..332421                     PHAGE_Thermu_OH2_NC_021784: phage-type endonuclease; AS86_336; phage(gi526118352)     1.72e-130           [BacillusthuringiensisHD1002]
332443..333249                     PHAGE_Thermu_OH2_NC_021784: RecT protein; AS86_337; phage(gi526118350)               8.35e-131           [BacillusthuringiensisHD1002]
333246..333416                     PHAGE_Bacill_PfEFR_5_NC_031055: hypothetical protein; AS86_338; phage(gi100037)      6.80e-13            [BacillusthuringiensisHD1002]
334398..335030                     PHAGE_Bacill_phIS3501_NC_019502: phage replication protein DnaC; AS86_341; phage(gi422934308)     3.07e-70            [BacillusthuringiensisHD1002]
335036..335515                     PHAGE_Bacill_G_NC_023719: gp577; AS86_342; phage(gi593778019)                        6.68e-09            [BacillusthuringiensisHD1002]
335528..335953                     PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; AS86_343; phage(gi100063)     1.19e-38            [BacillusthuringiensisHD1002]
335969..336637                     PHAGE_Lister_B054_NC_009813: gp58; AS86_344; phage(gi157325342)                      9.49e-13            [BacillusthuringiensisHD1002]
336627..337349                     PHAGE_Staphy_SpaA1_NC_018277: Zn-finger protein fused to HTH domain; AS86_345; phage(gi399498916)     2.83e-11            [BacillusthuringiensisHD1002]
337359..337781                     hypothetical protein; AS86_346                                                       N/A                 [BacillusthuringiensisHD1002]
337765..338499                     PHAGE_Bacill_WBeta_NC_007734: putative RNA polymerase sigma subunit; AS86_347; phage(gi85701416)     5.40e-74            [BacillusthuringiensisHD1002]
338732..338896                     PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; AS86_348; phage(gi589892758)     1.84e-19            [BacillusthuringiensisHD1002]
339075..339257                     PHAGE_Bacill_Grass_NC_022771: hypothetical protein; AS86_349; phage(gi568191701)     8.73e-07            [BacillusthuringiensisHD1002]
339292..340089                     PHAGE_Staphy_37_NC_007055: ORF016; AS86_350; phage(gi66395745)                       3.05e-87            [BacillusthuringiensisHD1002]
340759..341133                     PHAGE_Bacill_phi105_NC_004167: hypothetical protein; AS86_351; phage(gi22855040)     1.69e-24            [BacillusthuringiensisHD1002]
341495..341710                     hypothetical protein; AS86_352                                                       N/A                 [BacillusthuringiensisHD1002]
341995..342150                     PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; AS86_353; phage(gi31415775)     2.63e-14            [BacillusthuringiensisHD1002]
342212..342418                     putative phage protein; AS86_354                                                     N/A                 [BacillusthuringiensisHD1002]
342571..343143                     PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; AS86_355; phage(gi169936026)           4.67e-59            [BacillusthuringiensisHD1002]
343186..343722                     PHAGE_Lactoc_98201_NC_031064: hypothetical protein; AS86_356; phage(gi100030)        4.93e-51            [BacillusthuringiensisHD1002]
343688..345151                     PHAGE_Bacill_Pony_NC_022770: terminase large subunit; AS86_357; phage(gi568191534)     0.0                 [BacillusthuringiensisHD1002]
345148..345378                     hypothetical protein; AS86_358                                                       N/A                 [BacillusthuringiensisHD1002]
345392..345592                     hypothetical protein; AS86_359                                                       N/A                 [BacillusthuringiensisHD1002]
345650..347773                     hypothetical protein; AS86_360                                                       N/A                 [BacillusthuringiensisHD1002]
347774..348049                     PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; AS86_361; phage(gi971482548)     1.21e-30            [BacillusthuringiensisHD1002]
348049..348300                     PHAGE_Entero_IME11_NC_019423: hypothetical protein; AS86_362; phage(gi414090513)     2.56e-18            [BacillusthuringiensisHD1002]
348300..348560                     PHAGE_Bacill_JL_NC_028982: hypothetical protein; AS86_363; phage(gi971762827)        3.32e-39            [BacillusthuringiensisHD1002]
348560..348814                     PHAGE_Bacill_BMBtp2_NC_019912: hypothetical protein; AS86_364; phage(gi431809501)     6.07e-31            [BacillusthuringiensisHD1002]
348898..349746                     hypothetical protein; AS86_365                                                       N/A                 [BacillusthuringiensisHD1002]
349762..350952                     hypothetical protein; AS86_366                                                       N/A                 [BacillusthuringiensisHD1002]
351005..351475                     hypothetical protein; AS86_367                                                       N/A                 [BacillusthuringiensisHD1002]
351432..352007                     hypothetical protein; AS86_368                                                       N/A                 [BacillusthuringiensisHD1002]
352024..353532                     PHAGE_Bacill_BM5_NC_029069: hypothetical protein; AS86_369; phage(gi985757792)       1.28e-15            [BacillusthuringiensisHD1002]
353507..353914                     H-type lectin domain protein; AS86_370                                               N/A                 [BacillusthuringiensisHD1002]
353926..355380                     hypothetical protein; AS86_371                                                       N/A                 [BacillusthuringiensisHD1002]
355393..359664                     PHAGE_Bacill_Pascal_NC_027372: hypothetical protein; AS86_372; phage(gi100019)       9.39e-150           [BacillusthuringiensisHD1002]
359764..359988                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_373; phage(gi422934341)         2.60e-31            [BacillusthuringiensisHD1002]
360055..360285                     PHAGE_Paenib_Fern_NC_028851: bacteriocin biosynthesis protein; AS86_374; phage(gi971749421)     2.53e-24            [BacillusthuringiensisHD1002]
360285..360989                     PHAGE_Bacill_phiCM3_NC_023599: N-acetylmuramoyl-L-alanine amidase; AS86_375; phage(gi589892730)     1.77e-142           [BacillusthuringiensisHD1002]
complement(361379..361825)         PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_376; phage(gi422934344)         4.29e-82            [BacillusthuringiensisHD1002]
complement(361968..362171)         PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, PBSX family; AS86_377; phage(gi31415807)     1.77e-35            [BacillusthuringiensisHD1002]
362377..362694                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_378; phage(gi422934345)         3.22e-69            [BacillusthuringiensisHD1002]
362691..362873                     PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; AS86_379; phage(gi31415810)     2.76e-30            [BacillusthuringiensisHD1002]
362989..364170                     PHAGE_Bacill_phIS3501_NC_019502: FtsK/SpoIIIE family phage protein; AS86_380; phage(gi422934346)     0.0                 [BacillusthuringiensisHD1002]
364112..364732                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_381; phage(gi422934347)         1.15e-148           [BacillusthuringiensisHD1002]
complement(364758..365741)         PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; AS86_382; phage(gi971821635)     0.0                 [BacillusthuringiensisHD1002]
366080..366097                     attR                                                                                 N/A                 ATTTATGACGGGATTAAA

#### region 3 ####
417583..417594                     attL                                                                                 N/A                 TAAATAATAAAA
424594..425202                     PHAGE_Staphy_phi7401PVL_NC_020199: Panton-Valentine leukocidin chain S precursor; AS86_436; phage(gi448244684)     8.65e-09            [BacillusthuringiensisHD1002]
complement(425248..426309)         PHAGE_Bacill_phIS3501_NC_019502: phage integrase; AS86_437; phage(gi422934298)       0.0                 [BacillusthuringiensisHD1002]
complement(426748..426821)         tRNA                                                                                 N/A                 GGACCTTTAGCTCAGTTGGTCAGAGCAGACGGCTCATAACCGTCCGGTCATAGGTTCAAATCCTATAAGGTCCA
426879..426891                     attL                                                                                 N/A                 GTGCCTTTTCTTT
427390..427644                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_439; phage(gi422934300)     1.64e-54            [BacillusthuringiensisHD1002]
427786..429039                     PHAGE_Bacill_phIS3501_NC_019502: helix-turn-helix protein; AS86_440; phage(gi422934301)     0.0                 [BacillusthuringiensisHD1002]
429036..429185                     hypothetical protein; AS86_441                                                       N/A                 [BacillusthuringiensisHD1002]
429317..429442                     hypothetical protein; AS86_442                                                       N/A                 [BacillusthuringiensisHD1002]
complement(429460..429789)         PHAGE_Bacill_phIS3501_NC_019502: transcriptional regulator XRE family protein; AS86_443; phage(gi422934302)     9.76e-74            [BacillusthuringiensisHD1002]
430036..430281                     hypothetical protein; AS86_444                                                       N/A                 [BacillusthuringiensisHD1002]
430308..430433                     hypothetical protein; AS86_445                                                       N/A                 [BacillusthuringiensisHD1002]
430426..430614                     PHAGE_Staphy_SpaA1_NC_018277: transcriptional regulator, pbsX; AS86_446; phage(gi399498897)     4.44e-24            [BacillusthuringiensisHD1002]
430631..430786                     PHAGE_Staphy_SpaA1_NC_018277: phage related protein; AS86_447; phage(gi399498898)     9.62e-26            [BacillusthuringiensisHD1002]
430832..431611                     PHAGE_Bacill_phIS3501_NC_019502: putative antirepressor; AS86_448; phage(gi422934304)     0.0                 [BacillusthuringiensisHD1002]
431637..431753                     PHAGE_Staphy_SpaA1_NC_018277: phage related protein; AS86_449; phage(gi399498900)     2.48e-15            [BacillusthuringiensisHD1002]
431774..432088                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_450; phage(gi422934305)     1.98e-70            [BacillusthuringiensisHD1002]
432362..433009                     PHAGE_Bacill_phIS3501_NC_019502: RNA-polymerase sigma-factor; AS86_451; phage(gi422934306)     1.87e-159           [BacillusthuringiensisHD1002]
433254..434258                     PHAGE_Bacill_phIS3501_NC_019502: phage replication protein DnaD; AS86_452; phage(gi422934307)     0.0                 [BacillusthuringiensisHD1002]
434221..435033                     PHAGE_Bacill_phIS3501_NC_019502: phage replication protein DnaC; AS86_453; phage(gi422934308)     0.0                 [BacillusthuringiensisHD1002]
435075..435341                     PHAGE_Bacill_phIS3501_NC_019502: group-specific phage protein; AS86_454; phage(gi422934309)     1.38e-60            [BacillusthuringiensisHD1002]
435413..435577                     PHAGE_Staphy_SpaA1_NC_018277: phage related protein; AS86_455; phage(gi399498906)     4.70e-33            [BacillusthuringiensisHD1002]
435595..435810                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_457; phage(gi422934310)         3.24e-48            [BacillusthuringiensisHD1002]
complement(435807..436106)         PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_456; phage(gi422934311)     1.86e-68            [BacillusthuringiensisHD1002]
436485..436676                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_458; phage(gi422934312)     3.52e-40            [BacillusthuringiensisHD1002]
436838..437146                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_459; phage(gi422934313)     1.78e-69            [BacillusthuringiensisHD1002]
437174..437566                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_460; phage(gi422934314)         6.87e-94            [BacillusthuringiensisHD1002]
437607..437810                     PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; AS86_461; phage(gi197261537)      4.10e-20            [BacillusthuringiensisHD1002]
438178..438441                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_462; phage(gi422934315)     6.22e-58            [BacillusthuringiensisHD1002]
438641..438835                     PHAGE_Strept_858_NC_010353: orf42; AS86_463; phage(gi168229315)                      2.50e-07            [BacillusthuringiensisHD1002]
438874..439038                     PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; AS86_464; phage(gi589892758)     6.80e-24            [BacillusthuringiensisHD1002]
439771..440052                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_465; phage(gi422934317)     5.18e-61            [BacillusthuringiensisHD1002]
440412..440897                     PHAGE_Bacill_phIS3501_NC_019502: ArpU family phage transcriptional regulator; AS86_466; phage(gi422934318)     2.24e-117           [BacillusthuringiensisHD1002]
440894..441436                     PHAGE_Bacill_phIS3501_NC_019502: site-specific phage integrase; AS86_467; phage(gi422934319)     3.04e-131           [BacillusthuringiensisHD1002]
441652..441876                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_468; phage(gi422934320)     2.37e-46            [BacillusthuringiensisHD1002]
442306..442593                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_469; phage(gi422934321)     1.77e-63            [BacillusthuringiensisHD1002]
442628..442849                     PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_470; phage(gi422934322)     9.54e-46            [BacillusthuringiensisHD1002]
442842..443120                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_471; phage(gi422934323)         2.10e-59            [BacillusthuringiensisHD1002]
443117..443329                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_472; phage(gi422934324)         3.63e-44            [BacillusthuringiensisHD1002]
443463..443717                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_473; phage(gi422934325)         2.59e-57            [BacillusthuringiensisHD1002]
443707..444084                     PHAGE_Bacill_phIS3501_NC_019502: HNH endonuclease domain protein; AS86_474; phage(gi422934326)     8.97e-89            [BacillusthuringiensisHD1002]
444213..444716                     PHAGE_Bacill_phIS3501_NC_019502: terminase small subunit; AS86_475; phage(gi422934327)     1.42e-120           [BacillusthuringiensisHD1002]
444718..446412                     PHAGE_Bacill_phIS3501_NC_019502: terminase large subunit; AS86_476; phage(gi422934328)     0.0                 [BacillusthuringiensisHD1002]
446601..447854                     PHAGE_Bacill_phIS3501_NC_019502: portal protein; AS86_477; phage(gi422934329)        0.0                 [BacillusthuringiensisHD1002]
447841..448551                     PHAGE_Bacill_phIS3501_NC_019502: ATP-dependent Clp protease; AS86_478; phage(gi422934330)     3.04e-172           [BacillusthuringiensisHD1002]
448589..449755                     PHAGE_Bacill_phIS3501_NC_019502: phage major capsid protein; AS86_479; phage(gi422934331)     0.0                 [BacillusthuringiensisHD1002]
449776..450063                     PHAGE_Bacill_phIS3501_NC_019502: phage DNA packaging protein; AS86_480; phage(gi422934332)     1.11e-63            [BacillusthuringiensisHD1002]
450050..450373                     PHAGE_Bacill_phIS3501_NC_019502: phage head-tail adaptor; AS86_481; phage(gi422934333)     4.30e-75            [BacillusthuringiensisHD1002]
450366..450800                     PHAGE_Bacill_phIS3501_NC_019502: gp10 family phage protein; AS86_482; phage(gi422934334)     1.99e-101           [BacillusthuringiensisHD1002]
450797..451156                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_483; phage(gi422934335)         1.31e-84            [BacillusthuringiensisHD1002]
451157..451765                     PHAGE_Bacill_phIS3501_NC_019502: phage major tail protein; AS86_484; phage(gi422934336)     9.63e-143           [BacillusthuringiensisHD1002]
451814..452131                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_485; phage(gi422934337)         2.63e-73            [BacillusthuringiensisHD1002]
452352..456383                     PHAGE_Bacill_phIS3501_NC_019502: tail tape measure protein; AS86_486; phage(gi422934338)     0.0                 [BacillusthuringiensisHD1002]
456398..457879                     PHAGE_Bacill_phIS3501_NC_019502: phage tail component; AS86_487; phage(gi422934339)     0.0                 [BacillusthuringiensisHD1002]
457876..461901                     PHAGE_Bacill_phIS3501_NC_019502: phage minor structural protein; AS86_488; phage(gi422934340)     0.0                 [BacillusthuringiensisHD1002]
462025..462249                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_489; phage(gi422934341)         2.78e-45            [BacillusthuringiensisHD1002]
462325..462750                     PHAGE_Bacill_phIS3501_NC_019502: holin; AS86_490; phage(gi422934342)                 1.10e-96            [BacillusthuringiensisHD1002]
462809..463450                     PHAGE_Bacill_phiCM3_NC_023599: N-acetylmuramoyl-L-alanine amidase; AS86_491; phage(gi589892730)     4.07e-137           [BacillusthuringiensisHD1002]
complement(464061..464468)         PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; AS86_492; phage(gi422934343)     4.79e-92            [BacillusthuringiensisHD1002]
complement(464695..464877)         hypothetical protein; AS86_493                                                       N/A                 [BacillusthuringiensisHD1002]
complement(464931..465509)         PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_494; phage(gi422934344)         1.24e-140           [BacillusthuringiensisHD1002]
complement(465479..465697)         PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; AS86_495; phage(gi77020185)      2.29e-10            [BacillusthuringiensisHD1002]
complement(465694..465894)         PHAGE_Bacill_PfEFR_5_NC_031055: hypothetical protein; AS86_496; phage(gi100025)      1.88e-11            [BacillusthuringiensisHD1002]
466068..466385                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_497; phage(gi422934345)         1.70e-71            [BacillusthuringiensisHD1002]
466382..466564                     PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; AS86_498; phage(gi31415810)     1.13e-29            [BacillusthuringiensisHD1002]
466680..467861                     PHAGE_Bacill_phIS3501_NC_019502: FtsK/SpoIIIE family phage protein; AS86_499; phage(gi422934346)     0.0                 [BacillusthuringiensisHD1002]
467893..468423                     PHAGE_Bacill_phIS3501_NC_019502: phage protein; AS86_500; phage(gi422934347)         6.40e-131           [BacillusthuringiensisHD1002]
complement(468433..469263)         PHAGE_Bacill_BCP78_NC_018860: hypothetical protein; AS86_501; phage(gi410492980)     3.02e-109           [BacillusthuringiensisHD1002]
469664..470230                     PHAGE_Staphy_phi2958PVL_NC_011344: Panton-Valentine leukocidin chain F precursor; AS86_502; phage(gi209363612)     1.71e-05            [BacillusthuringiensisHD1002]
483298..483310                     attR                                                                                 N/A                 GTGCCTTTTCTTT
484339..484350                     attR                                                                                 N/A                 TAAATAATAAAA

#### region 4 ####
3591322..3591333                   attL                                                                                 N/A                 ATGCTCTACCAA
complement(3602866..3603468)       PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; AS86_3673; phage(gi20065968)     4.66e-22            [BacillusthuringiensisHD1002]
complement(3603498..3604124)       hypothetical protein; AS86_3674                                                      N/A                 [BacillusthuringiensisHD1002]
complement(3604156..3604293)       hypothetical protein; AS86_3675                                                      N/A                 [BacillusthuringiensisHD1002]
complement(3604649..3604933)       hypothetical protein; AS86_3676                                                      N/A                 [BacillusthuringiensisHD1002]
complement(3604954..3605334)       PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; AS86_3677; phage(gi77020164)     1.88e-65            [BacillusthuringiensisHD1002]
complement(3605356..3605574)       hypothetical protein; AS86_3678                                                      N/A                 [BacillusthuringiensisHD1002]
complement(3605888..3608440)       PHAGE_Staphy_PT1028_NC_007045: ORF001; AS86_3679; phage(gi66395165)                  1.85e-83            [BacillusthuringiensisHD1002]
complement(3608544..3608870)       hypothetical protein; AS86_3680                                                      N/A                 [BacillusthuringiensisHD1002]
complement(3608885..3609031)       hypothetical protein; AS86_3681                                                      N/A                 [BacillusthuringiensisHD1002]
complement(3609150..3609437)       PHAGE_Paenib_Tripp_NC_028930: excisionase-like protein; AS86_3682; phage(gi971756994)     2.48e-09            [BacillusthuringiensisHD1002]
3609659..3610243                   PHAGE_Staphy_CNPx_NC_031241: hypothetical protein; AS86_3683; phage(gi100035)        3.65e-10            [BacillusthuringiensisHD1002]
3610292..3611470                   PHAGE_Thermu_OH2_NC_021784: integrase; AS86_3684; phage(gi526118367)                 0.0                 [BacillusthuringiensisHD1002]
complement(3611549..3613183)       PHAGE_Cellul_phi14:2_NC_021806: chaperonin GroEL; AS86_3685; phage(gi526178751)      3.34e-105           [BacillusthuringiensisHD1002]
complement(3613223..3613507)       PHAGE_Bacill_0305phi8_36_NC_009760: GroES; AS86_3686; phage(gi156564025)             8.25e-17            [BacillusthuringiensisHD1002]
3613899..3614648                   PHAGE_Bacill_G_NC_023719: gp60; AS86_3687; phage(gi593777528)                        1.59e-06            [BacillusthuringiensisHD1002]
3614645..3614836                   hypothetical protein; AS86_3688                                                      N/A                 [BacillusthuringiensisHD1002]
complement(3614866..3615495)       DNA-binding family protein; AS86_3689                                                N/A                 [BacillusthuringiensisHD1002]
3615683..3617617                   PHAGE_Bacill_G_NC_023719: gp245; AS86_3690; phage(gi593777701)                       7.57e-09            [BacillusthuringiensisHD1002]
complement(3618102..3619118)       PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; AS86_3691; phage(gi16130960)     7.40e-90            [BacillusthuringiensisHD1002]
complement(3619118..3619561)       PHAGE_Erwini_vB_EamM_Phobos_NC_031043: hypothetical protein; AS86_3692; phage(gi100097)     2.67e-05            [BacillusthuringiensisHD1002]
complement(3619576..3620268)       PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; AS86_3693; phage(gi16129761)     8.23e-17            [BacillusthuringiensisHD1002]
3626451..3626462                   attR                                                                                 N/A                 ATGCTCTACCAA

#### region 5 ####
5048781..5048792                   attL                                                                                 N/A                 ATGCGAGAGAAT
complement(5049108..5050169)       PHAGE_Bacill_phiCM3_NC_023599: YdcL; AS86_5216; phage(gi589892736)                   1.81e-111           [BacillusthuringiensisHD1002]
complement(5050472..5050545)       tRNA                                                                                 N/A                 GGACCTTTAGCTCAGTTGGTCAGAGCAGACGGCTCATAACCGTCCGGTCATAGGTTCAAATCCTATAAGGTCCA
5051510..5052763                   PHAGE_Bacill_phIS3501_NC_019502: helix-turn-helix protein; AS86_5218; phage(gi422934301)     0.0                 [BacillusthuringiensisHD1002]
5052760..5052909                   hypothetical protein; AS86_5219                                                      N/A                 [BacillusthuringiensisHD1002]
5053045..5053221                   PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; AS86_5220; phage(gi31415743)     2.86e-09            [BacillusthuringiensisHD1002]
complement(5053245..5053583)       PHAGE_Bacill_phiCM3_NC_023599: transcription regulator, putative Cro/CI family; AS86_5221; phage(gi589892740)     1.55e-10            [BacillusthuringiensisHD1002]
5053762..5054082                   PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator; AS86_5222; phage(gi31415745)     3.31e-08            [BacillusthuringiensisHD1002]
5054102..5054257                   PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; AS86_5223; phage(gi589892744)     1.03e-15            [BacillusthuringiensisHD1002]
5054278..5054475                   hypothetical protein; AS86_5224                                                      N/A                 [BacillusthuringiensisHD1002]
5054487..5054675                   PHAGE_Bacill_phiCM3_NC_023599: transcriptional regulator; AS86_5225; phage(gi589892743)     1.03e-26            [BacillusthuringiensisHD1002]
5054696..5055340                   PHAGE_Bacill_phiCM3_NC_023599: RNA polymerase sigma factor; AS86_5226; phage(gi589892748)     9.80e-96            [BacillusthuringiensisHD1002]
5055388..5056623                   PHAGE_Entero_IME_EFm5_NC_028826: helicase; AS86_5227; phage(gi971746909)             9.00e-35            [BacillusthuringiensisHD1002]
5056613..5056930                   hypothetical protein; AS86_5228                                                      N/A                 [BacillusthuringiensisHD1002]
5056931..5057209                   PHAGE_Entero_IME_EFm1_NC_024356: hypothetical protein; AS86_5229; phage(gi658310507)     9.61e-14            [BacillusthuringiensisHD1002]
5057209..5059128                   PHAGE_Strept_phiARI0131_1_NC_031901: hypothetical protein; AS86_5230; phage(gi100038)     2.16e-19            [BacillusthuringiensisHD1002]
5059152..5059469                   hypothetical protein; AS86_5231                                                      N/A                 [BacillusthuringiensisHD1002]
5059469..5059960                   hypothetical protein; AS86_5232                                                      N/A                 [BacillusthuringiensisHD1002]
5060024..5061712                   PHAGE_Entero_IME_EFm5_NC_028826: DNA polymerase; AS86_5233; phage(gi971746927)       9.92e-71            [BacillusthuringiensisHD1002]
5061714..5061965                   PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; AS86_5234; phage(gi971482539)     2.11e-11            [BacillusthuringiensisHD1002]
5062161..5064038                   PHAGE_Strept_P9_NC_009819: primase; AS86_5235; phage(gi157311152)                    8.37e-40            [BacillusthuringiensisHD1002]
5064484..5064879                   PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; AS86_5236; phage(gi77020164)     1.55e-44            [BacillusthuringiensisHD1002]
5065638..5065772                   hypothetical protein; AS86_5237                                                      N/A                 [BacillusthuringiensisHD1002]
5065931..5066503                   PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; AS86_5238; phage(gi169936026)          6.00e-57            [BacillusthuringiensisHD1002]
5066545..5067051                   PHAGE_Clostr_phiCDHM19_NC_028996: putative terminase small subunit protein; AS86_5239; phage(gi971763866)     1.52e-50            [BacillusthuringiensisHD1002]
5067017..5068510                   PHAGE_Bacill_Pony_NC_022770: terminase large subunit; AS86_5240; phage(gi568191534)     0.0                 [BacillusthuringiensisHD1002]
5068507..5068737                   hypothetical protein; AS86_5241                                                      N/A                 [BacillusthuringiensisHD1002]
5068751..5068951                   hypothetical protein; AS86_5242                                                      N/A                 [BacillusthuringiensisHD1002]
5069010..5071133                   hypothetical protein; AS86_5243                                                      N/A                 [BacillusthuringiensisHD1002]
5071134..5071346                   PHAGE_Bacill_JL_NC_028982: hypothetical protein; AS86_5244; phage(gi971762828)       5.94e-36            [BacillusthuringiensisHD1002]
5071346..5071597                   PHAGE_Entero_IME11_NC_019423: hypothetical protein; AS86_5245; phage(gi414090513)     1.23e-17            [BacillusthuringiensisHD1002]
5074397..5074408                   attR                                                                                 N/A                 ATGCGAGAGAAT
