gi|00000000|ref|CP009843.1|  Yersinia pestis strain Dodson plasmid pMT, complete sequence. 53435, gc%: 48.20%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
21290..21301                       attL                                                                                 N/A                 AAAAACAGGCAA
27491..28594                       PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; CH61_4351; phage(gi399528791)        2.85e-22            MKNTFDKARAAENTSREAIEYLERASGLSAVSTANFDGDMSFSSAFMLFTRLSLLITRRRPEIAVHCVLIHVMPHISEVKVSDISRVLVNQLVNPLILEGKIVQGRRVFSLMKQFLSWCAFQGLIDTSPLNDMSLNKVAGGAKPVPRERKLTDAEVWVFWNIWDYFNVCEGTKWAARLCLVAARRPDEVLRARKDEFNLQRDVWNQGTRNKSARQHALPLSPLMRKCVEELFEYGKGSQWLVPSNKKKGVDTPMSKVAIAQALRRILERPELMDLEPFTPRDLRRTARSYFPALGINQEVARKIMNHSLEGIDRVYDRHDYMDEMRDALDRFSAYIASIVEQQDLDEIDHKFKGDRLATELIRVNFS
complement(28589..28975)           PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; CH61_4350; phage(gi100041)     1.70e-09            MATNETDSKQGRYAAYIDSLITISPKSQATIAKEVGYKNANNLSLIKSGKIPLPVDKVRALAVALDADPVRLMLMVLEERHPELLEFFREEGTAPLSADEKRVLEAFRNRFGDQRGASDQVVEAIKKL
29238..29450                       hypothetical protein; CH61_4352                                                      N/A                 MKNITSNLNALEVGHAYALGMDGVATILTELNTEELPIDMSDTTVFTFELSNKHFTLINTGCGSLAVRTH
29560..31926                       PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; CH61_4353; phage(gi410491459)     0.0                 MSKAMTRAVLKEVQDFRDCVKRVVAMLSGKQIPVAERGNEAYVRYNRRGEPVLVNIPSIPDDASPTLMNAVRGFLDHEVAHILFTDPKVAMKMRERGKAPSTGLWNALEDVFIERRMGQVFNGTRRNLLATQNLVIDKYFKGKVSEAVSICHGNQRELFLKFFLCPVVRAWDGQSPFIDFMEEHWHLIDKPVALLKEHGIDVAVRNMSNTEDCVKVAAAIAQIMQDMKDKPEGKLPELKSSAKKPSKSKDESEETPESGDDPSHSESAPKRTKGEDDDKEEQEDDASEEEDSGDSDLPDSLDKDLPIHDKEISDTESKYTEAGEDESGDTPESDDAGMESGDSDDEGGSDGTGAPTPGDGIREDADDSDGYGSGAAGDGDSDNGEDSDAGREESEGEDEGEEDVADHTDGEGKENEDAAEAPEDSESGFVPAPDEMTLEDALKALDEMEEGTDEMTEDALSATISKELMSASLSEYRPYDRSYDFIGLIDEAEEHVKRTRKTFGAIPMHSPVDRYRMVPEGRKLFELKIEKHLSAGVSSTLAKDLERAIASRNRVQFIPGQRRGRIHGANLYRLAMNDDRVFRKKEDHRAVNACVQQVIDLSGSMGGRKIQLALASAYTIADALDRINVPNIITGFTTFGSPDYETMSKRGFTRFEALMLPIIKNWNEKANSPEIRARMGCVCETFPLLNNVDGESVAQLATLFAGRMEDKKIMLVMSDGAPCAAGDGFHEHLRTVTKEIETLSDIDLMAIGVLTDAPRRYYKNYALVNSVEELGPSVVTELSRIILG
32023..33258                       PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; CH61_4354; phage(gi410491460)     0.0                 MTATALQQEEHLPEAIVCKWCGKSFHYLKSHISMGRCENIPESAKGLDVDEVVKMYTSAFPDEPTISRTALVKLNEKRAERHSGEGKVAEISAHPGYAGTVEYKTELVAAHELLGVTIKELGTPRGKPLQVTVNVNTPYPEFVPEAKKNYVYGDFDLIKDIFMMLEIGIPGYLWGHAGTGKSSLPTQLCALLNRPLIRAQHTASMEEAHVTGQILARDGSTYFEPGLLALAMKNGWVYLADEYDFAFPQILGVYQPVLEGEPLIIKEATPDWRRITPHKRFAFIGTGNTNGSGDETGLYQGTNIQNAANFSRFGIVSNVKYMSTKAEVNMLAEAGVIREYAEKMVKFANLVREGYEQHLISQPIGPRELLLSAKIGMMRGDFSAGIEKSFINKLPSTSAQAAREVVQKIFG
33439..36552                       PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; CH61_4355; phage(gi410491462)     0.0                 MKALMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAAGDDMAVICGVKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQRRDFAKIIGTLVTAGGRDNFYSVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVDAADMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPVELRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEPGSLPATDPERLRDQAELMGNLVIDAVKASRPFEMNPKRSAEVNVLMTRMAAEMGLGVTNGAIVIHTQRLKSDPGGNLLS
36566..37309                       PROPHAGE_Escher_CFT073: transposase; CH61_4356; phage(gi26248360)                    5.43e-85            MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSFLRSRSLPFGSKLNPDDRCRLTGALCVMVAHRFTCSLLFSDTAECCTSNSLTICRYDTLETCHRNAFPLLWCVPREVLYDNMKTVVLQRTHIRPVSTGSILRCGSSARRWASLPDCVAPSGHRLKVRWNGWCSTPVTVFTSH
37273..37587                       PROPHAGE_Escher_CFT073: transposase; CH61_4357; phage(gi26248360)                    1.82e-70            MQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
37797..38366                       PROPHAGE_Escher_CFT073: transposase/IS protein; CH61_4358; phage(gi26248359)         6.54e-136           MKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
38382..38921                       PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; CH61_4359; phage(gi410491462)     6.47e-107           MGRWWRYKWITFHPSLTLGDDLIRPSIGIKPKIMVILDNANGNDGRTGYFMENGYDDFKAKLLTAGDLRMGDLYVTGVCKKVKDKEKDYTKDEIGQFTDFMREEINLVRPTYVLTCGSRATSLFNNKSKPSDLVGRKEYLPELDVTVFYGFNPNILYFRPEEGEKLEAILAEVAETISK
38918..39361                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4360; phage(gi410491463)     1.81e-99            MNKENTMNEAQKIAQALAAIPADFQDKAVAATMRSQFWEIIDCPVTLDLALAFAGLDGADKVSRLRKCARALALKTQDPKACQYLLEIYESDNPEEQLEAFKVFRNRLVLKVAKEFMEVNKIGDVRQYRLKRQTRVTLSNIFGKKVA
complement(39391..39954)           PHAGE_Salmon_SSU5_NC_018843: putative phage transcriptional regulator AlpA-like protein; CH61_4361; phage(gi410491464)     1.57e-86            MALYNFTLTLSGVTYETEGLEDALYESGCGDAIVCAYGNSVYVEFDREAKSLDAAIASAVDNIESAGIGAIVESVDSALVGLSDVAEMTGMSRQAITMLKDGLRGGGDFPCPIQRIQGQSPLWDWADVANWLEANGRLKENAELAHNARVLSKWNLALRNSVSKDFVEIEHIASSLIARRRHHAECA
complement(40027..40278)           PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4362; phage(gi410491465)     4.11e-14            MKSHPNKHIQEAIEYALSKGWVWVPAGKSAHCFCKLRCGDKSGEHTSHHRSVWSTPDVPEHHATQIRQAVDQCGRIKNQMSKK
40499..40930                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4363; phage(gi410491466)     8.03e-100           MSADIYEKIMSDLEFDRDNLEEVWRQQPRLLMEYGSKLARAEREVADAKLSLDAIEAKIYDNERKNLSMNGIKFNESVLEAKVRTNPQYLAKRQKLDDARHIADLYKHAVTAFSHRRDMIVQASKMAIVEIERLGAERFHSPR
41050..42078                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4364; phage(gi410491467)     0.0                 MSKSLLDLLNKTRGDIASKRGNNVDLTRLKDGNNYLRIFPNKDDPNGVFFQTFGMHYVKHQNEEGKDVTTAYICEQHTHGHACQLCEMVMEGRARFKGNKAMEERINSMRATPRYLVNGVLSAREDFADAEKCQLIELPSTVFDDICKVMSEDIADDIGNPLSKEEGYAFLIKRTGSGRDTKYDVSPKRKVYKGDIPEKLWTTQHDLIAYANQADETRLLSTARTMGRLIGIAAPAATMSSPAISSAAKSAAAELPGFGSITGHTEGAAAVATAHTPAPESTSLVDEEILRAAEAEFKPETKPEKVKAPEAAAAASASASAAAASVPADEGLDDLLAELDAL
42139..43083                       PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; CH61_4365; phage(gi410491468)         0.0                 MNYLFVDGNSLGYYHQQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPMILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDLAGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLPTPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINKGRYKTAFNKLAKNAFNEKTGCRMLEAFKRNMMLMNLIDTKFPPSEIESIKGARDMNAFEQMCCELNFRSFLEDLEVFVLPFERYC
43083..43349                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4366; phage(gi410491469)     1.72e-57            MLKSIINGGATTPTMLAKEIVFCHGEHAVVALPNILGAAGISATEREFALVSEQVVKIIARVAKHLNHDAIKFDEAAASKRINESKGA
43352..44428                       PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; CH61_4367; phage(gi410491470)     0.0                 MAKGKSALALALKKKIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRIRLGASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIESLVEYMLEEGYLPKNASGRVEIGDKRYTKSQIVEMYREKPLPEIIAALQAIDERRAKESSPAETEEA
44519..44719                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4368; phage(gi410491471)     7.23e-39            MIKGYLMAVSAVVSVCFIYGLLVPSLISAKSDLAFFIGLAIAVVFPVALLKAGRRYINSLNKTKEK
44723..45553                       PHAGE_Salmon_SSU5_NC_018843: putative SPFH domain / band 7 protein; CH61_4369; phage(gi410491472)     0.0                 MKKGLLAVTLAAICTMGLTGCDRVEPGYVGIKVNKLGEDKGIGEVVGVGRQWTGLNTELYTFPTFKQMKTYDEPFTFQMSDGTAIGHKIGVAYLVNRNKVTTVFQTYRKGVDDITDTDLRQKIADSLNRLASRMTTDTFIDGGKASLLDNALKDIQAEMSPVGIEVISLSWVGKPDYPDTVIESINAKVTANQKTLQRQQEVEQRKAEANMLREQAEGEADAIRKRAQAEADAIKLRGEALRQNPNVMELEAINKWNGQLPQYMTEGANTPFIALK
45707..46078                       PHAGE_Salmon_SSU5_NC_018843: putative NinX-like protein; CH61_4370; phage(gi410491473)     1.12e-79            MKNYAEMTDFEINCLVAEATGHRPLISQYGWKGSQVGDYTKVIAIGPNGAGSFDWCNNPVDAWDIISRNRIGIIPARQAGEWRAAHRLVDSSTPQHLIQNPNPFRAAMIVFLLMQEKKREKTV
46062..46472                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4371; phage(gi410491474)     1.38e-94            MKKLYDAANAALDVVDTEIAQGFPEPEWATQLREAIAEMNAPEPSEDEADWQRFIRMYAEEIGPTPTAEQAMLLKYFKEAGENLPVDDTPHWFHAAWRKFDVIYTRDLGSKDMVVWHLMHIDKAVDRTLEKFFPPA
46540..46815                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4372; phage(gi410491475)     3.06e-59            MKILVRISSSTDYDVYPLFMVKCDGLNDEEIQAAIERNLVEYTGMDADSVHVDDDGVCWSNGSCWYVDDTTPVSDEDAAHLERILGISTFE
46856..47035                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4373; phage(gi410491476)     1.04e-28            MKTVLDTLLLIISIAFVLDCIFTGVIHKALAPVNSAMINALAVVLLFDSAFGVIQGVVA
47032..47367                       PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; CH61_4374; phage(gi410491477)     9.42e-63            MKKTALALALFTLPVYANTHVYECEMSVAEVKNDEICNVVKANYGAMIVDSGEQFYVVRDDRVLSSPYLTRRNGKLSGVGEDKFVYDKSGDVYGVHAKNASYLFDDCKEVG
47367..47579                       PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; CH61_4375; phage(gi410491478)     3.16e-43            MAVTMAGLEIEKTSGYWRAKGFKQPGVLERLEREDGVIIHQRREWRMYDPETGKLTTKAGTLWGLLKKIH
complement(48148..49212)           PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; CH61_4376; phage(gi410491479)     0.0                 MSENGNKNIAIVEAFSETDKKTGEVVTLVPNTNNTVQPVALMRLGLFVPTLKSTSRGRKGQMVSMDASAELKQLSLAKAEGYEDIRISGVRLDMDNDFKTWVGIIHAFAKHKVVGDTVTLPFVEFVRLCGIPTARSSAKLRKRLDSSLTRIATNTISFRSKGSDEYYVTHLVQTAKYSTKNDTVSLQADPKIFELYQFDKKVLLQLRAINELSRKESAQALYTFIESLPPDPAPISLARLRARLNLTSRTITQNATVRKAMEQLREIGYLDYTEVKRGSSVYFIIHYRRPKLRPALPPTKAAPEEPEEQEDNLPGDGQEDIIDVVPEEKDGEMVMLSKEELAILEELRKAKARK
49615..49626                       attR                                                                                 N/A                 AAAAACAGGCAA
