gi|00000000|ref|CP010113.1|  Mycobacterium avium subsp. paratuberculosis strain E1, complete 4781002, gc%: 69.30%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
1785987..1786000                   attL                                                                                 N/A                 CGGCGGCGGCCCGC
1797226..1798371                   PHAGE_Rhodoc_E3_NC_021347: putative DnaJ-like chaperone protein; RC58_08290; phage(gi509142336)     3.93e-06            MARDYYGLLGVSRGASDAEIKRAYRKLARELHPDVNPDEAAQAKFKEISVAYEVLSDPEKRRIVDLGGDPLEGAAAAGGGFGGFGGLGDVFEAFFGGGFGGGTTSRGPIGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTNGDSAPVPCDTCGGRGEVQTVQRSLLGQVMTSRPCPTCRGVGVVIPDPCHQCMGDGRVRARREISVKIPAGVGDGMRVRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVREGDDLHCTVSVPMVDAALGATVTVDAILDGVSEITIPPGTQPGSVITLRGHGMPHLRSGTRGDLHVHVEVVVPSRLDARDTELLREFKGRRGRDVPEVRSTHAGGGLFSRLRETFTGR
1798395..1799156                   ribosomal RNA small subunit methyltransferase E; RC58_08295                          N/A                 MVATLFYTDELPDAGSLAVLGGDEGFHAATVRRIRPGERLVLGDRAGGLARCEVEHAGRDGLRARVLERWTVAPPNPPVTVVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDKGLRRWRAVAKAAARQSRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALHESATDRLTDVPVAQAKSLFLVIGPEGGIADDELAALRQAGALSVRLGPQVLRTSTAAAVALGALGVLTPRWDDAASP
1799317..1800375                   PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; RC58_08300; phage(gi589287556)                 4.59e-58            MTPRDTSAADAAGALQADAQVRISIDVPPDIVMGLLGSADENLRALERSVIADLHVRGNAITISGESADVARAERVISELVAIVANGQVLTPEVVRHSVAMLAGTDNESPAEVLTLDILSRRGKTIRPKTLNQKRYVDAIDANTIVFGVGPAGTGKTYLAMAKAVNALQTKQVSRIILTRPAVEAGERLGFLPGTLSEKIDPYLRPLYDALYDMMDPEVIPKLMSAGVIEVAPLAYMRGRTLNSAFIVLDEAQNTTAEQMKMFLTRLGFGSKIVVTGDITQVDLPGGATSGLRSAMEILDRVDDIHVAELTSVDVVRHRLVSEIVDAYAKFEEPGLTMNRAARRASGSRGRR
1800398..1800931                   heat-shock protein; RC58_08305                                                       N/A                 MSIEVSNESGIDVSEAELISVARFVIAKMDVNPAAELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAADQAAAAGHSLGHELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEEWVADQVEAYHQDRQQERDRRLLDKSRYFDH
1801047..1801280                   PHAGE_Mycoba_Rumpelstiltskin_NC_023732: gp41; RC58_08310; phage(gi593779428)         1.73e-12            MCRPTLHWDADHVSRLMECRNIRNRRALAKALRRHPSGVYRAFDEDWSGGVSLDILAAMSVRFNVPVGWLVRDPRGR
1801280..1801723                   hypothetical protein; RC58_08315                                                     N/A                 MPIKRYPVGDVDQDDALTKAGEAPELPTEVVSPTTPPTDVGPTAWAEVGDDSLDDSSNLDDRRPLSVALMTLLAGVVIGWIGLGAYMIGEHVSHRSEGVNESLPPSRTVQIPSNVAKPTTTATPTPALKIQPNAWEAFTYLLRARGG
1801720..1801929                   hypothetical protein; RC58_08320                                                     N/A                 MSIDPAEKDYDDKANRHLCWTLFSNDDPAFRQKTIQGSIEASEGGTWGKPEATYAIRSAIMAYCPQFDR
complement(1801942..1802523)       hypothetical protein; RC58_08325                                                     N/A                 MDQDDLPRTARVSIVAPSPEGELAEVALLFTNIVRRDTAAFREELQNLVNSLAETSETKPVITESQTPYPGGGLAQYGIAFAVGLPTALAYNVIYDALKKLSHRFSWTAGSPPQERFLMENANPLALGAIEQGFGVARDDLRPVVVDVQGLRAHVVYHAKDGSMFTVEMENTGQFAITSVRKNWPNAGWGDES
complement(1802684..1802851)       PROPHAGE_Escher_CFT073: transposase; RC58_08330; phage(gi26248352)                   5.04e-13            MRTDPSSRTYYDRKRTEGKRHTQAVLALARRRLNVLWAMLRDHAVYHPATTTAAA
complement(1803199..1804101)       PHAGE_Burkho_phiE125_NC_003309: putative transposase OrfB; RC58_08335; phage(gi17975200)     5.43e-68            MLTEHGCKIAPRTFYAWLARAPSARALWDTVITEVLAGYYEPDEHGRRKPESLYGATKMWAHLQRQGIGVARCTVERLMRANGWRGVTRRKKVRTTIADPAAARAADLVKRKFRVPAPNMLLVADFTYVRLASGAFVYTAFAIDAYAGRIVGWTCSASKEDRFLRQAIRDAAQLRSNEGNPLLGNTVHHSDAGSQYTSVRFGETLSLSGLVPSIGTVGDAFDNALAETTIGLYKTEAVRADSPFRRGPLNRLADVEMLTADWVHWYNTDRLMHRLGRIPPVEYEAIYYAANTAQSAAAHQ
complement(1804158..1804469)       PHAGE_Burkho_phiE125_NC_003309: ISBt3 transposase subunit protein; RC58_08340; phage(gi17975201)     4.76e-17            MPKKYDEATKSKAVRLVVDHRDEYDSEYGCIRAVATRIGVGPETLRKWVRQAEIDGGERDGVTTATNRENRELKRKVAELEQTVEMLRAATTFFVRESDPRHR
complement(1804623..1805147)       hypothetical protein; RC58_08345                                                     N/A                 MLFVGGLVGVWCTNRNADKRHREQLDTTRAEGRADRAAERNDRLREEVANLLGERWATDKAAYKLATAADEYKTDRQRPEVSANERFNKALQVRDEHTPQLNKVEQLAIRAWLLTTDAGISSTLDAIRTVAQLWKDLVDSDPIETYTEIRDRLNKDFGRLEVLTRQLVTSDGAA
complement(1808920..1809357)       hypothetical protein; RC58_08350                                                     N/A                 MATRHGFVRVQMRDGRREKVSQAHLIAVAAHGWPEYWTCEKCRETVPYILGRLDELGDDSPDNLKWVPDAEAMLWHVIGCCLENLMAGKPHEEEPNREWVDSFVYDIEAAEFSGETYMCHPTSPKTEKLIQWGLKKEYEAEHQVT
complement(1809449..1809664)       PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; RC58_08355; phage(gi985761242)     6.52e-09            MNKEIKRRTDVVGVFPNPAALLRLAGSVLVEAHDEWQVAEKRYLSETTLALLHPRSDSADQSVAVPAAITA
complement(1810669..1810971)       hypothetical protein; RC58_08360                                                     N/A                 MSEEDYAHGLNDGRDIGFDVGWDEGYVGGWDDGYDGGWVDAFCEGYRTGRDDETGAIADDRGAWWPCKWCGGRADCYRVSDELWRIYGPPTQGWLCASCF
complement(1810968..1811207)       hypothetical protein; RC58_08365                                                     N/A                 MRLQVAVHESWARTENRSARTHNARKAAWDRFEKQVDPEGKLPPALRAKMAENARAAHFKKMALKSVESRRRRRDGVAA
complement(1811456..1812139)       PHAGE_Mycoba_HufflyPuff_NC_022981: integrase (Y-Int); RC58_08370; phage(gi563398937)     8.41e-67            MSKSRDLALKRYAKWLVDEGELSSDPLLGLKPPKGDQKVVNALTEDQLKRLIAACQGKSLMDRRDETIVRLMAETGLRANETLSLQITDVNLDAGIVTIVRGKGGKGRVSPFSVQTATAIDRYLRARRAHRLSNTGALWLGGGGKSLGYYGLSKALKQRATAAGIETFHLHMLRHTAATRWLRAGGSESGLMSVAGWKNRSMIDRYVGAAAASLAADEARRLNLGDI
1826171..1826184                   attR                                                                                 N/A                 CGGCGGCGGCCCGC

#### region 2 ####
4681306..4682418                   PHAGE_Mycoba_HINdeR_NC_021308: esterase/lipase; RC58_21780; phage(gi508179963)       7.26e-05            MSPDRTRKRHKGRTWLAGGAGVTAVATIVGASARRSMTQRATIEDPYADEDFNTFDGDRALVVTTPDGVPLAVREAGPPDAPLTMVFVHGFCLQMGAFHFQRTRLPEQLGPDVRMVFYDQRGHGRSGEAAPESYTLTQLGRDLQTVLQVVAPRGLVVLVGHSMGGMTVLSHARQFPEQYGRRIVGAALISSAAEGVSRSPLGEILKNPALEAVRVAARSAPKLMHRGRNVSRSLIGPVLRAASFSDLQVSRSLDAFSQRMMNSTPIPTMVGFLDALEHHDETAGLWTLLRVPTLIACGDHDLLTSDEYSRKMAASLPQSELVIVAGASHLALLDKPEAINGGLVRLVRRATPSRAALALRRIGERLWRRG
4682411..4682890                   ATP-binding protein; RC58_21785                                                      N/A                 MAESGTATLPTAQDTAALGARLAEQLRAGDVVVLSGPLGAGKTVLAKGIAAAMDVDGPVTSPSYVLARVHPPRRPGAPTMIHVDLYRLLDHTGNQGADLLGELDSLDLDSDLDDAVVVAEWGEGLVERLAPRHLDIRLERVSGSDVRIATWRWAGGEPS
4682887..4683513                   PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; RC58_21790; phage(gi16129761)     1.94e-12            MSPLVLALDTSTPAVTAGIVRRDDLSVLAQRITVDARAHAERLTPNVLAALHDSGLNMTDLVAVVVGCGPGPFTGLRAGMATAAAYGHALGIPVHGVCSLDAIGGQTTGDTLVVTDARRREVYWARYRDGVRTDGPAVAAPADVDPGGAEAVAGSPEHARLFGLPVTGPAHPTPAGLVAAVGDWSVRPQPLVPLYLRRPDATPRAARP
4683510..4683980                   alanine acetyltransferase; RC58_21795                                                N/A                 MTAGGEPVTVGALTRADARRCAELEAQLFDGDDPWPAAAFHRELASAHNHYVGARVGDTLVGYAGISRLGRVPPYEYEIHTIGVDPAYQGRGIGRLMLDRLLEFADGGVVYLEVRTDNEPAIGLYRSVGFEQIGLRRRYYRISGADAYTMRRKARQ
4683977..4685002                   PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; RC58_21800; phage(gi16130960)     1.03e-73            MTTILAIETSCDETGVGIARLDADGAVTLLADEVASSVDEHVRFGGVVPEIASRAHLEALGPTMRRALSAAGVTKPDVVAATIGPGLAGALLVGVAAAKAYSAAWGVPFYAVNHLGGHLAADVYQHGPLPECVALLVSGGHTHLLQVRSLGDPIVELGSTVDDAAGEAYDKVARLLGLGYPGGRVLDELARTGDREAIVFPRGMTGPRDAPYAFSFSGLKTAVARYLESHPDAVNADVAAGFQEAVADVLTRKAVRAATDLGVTTLLIAGGVAANSRLRELAEQRCAAAGLTLRIPRPGLCTDNGAMIASFAAHLVAAGAPPSPLDVPTDPGLPVVKAQVS
4685208..4685510                   PHAGE_Bacill_0305phi8_36_NC_009760: GroES; RC58_21805; phage(gi156564025)            4.24e-18            MAKVNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK
4685599..4687215                   PHAGE_Cellul_phi14:2_NC_021806: chaperonin GroEL; RC58_21810; phage(gi526178751)     6.39e-96            MSKIIEYDETARRAIEAGVNTLADAVRVTLGPRGRHVVLAKAFGGPAVTNDGVTVAREIDLEDPFENLGAQLVKSVATKTNDVAGDGTTTATVLAQALVKGGLRLVAAGANPIELGAGISKAADAVSEALLASATPVSGKDAIAQVATVSSRDQVLGELVGEAMTKVGVDGVVSVEESSTLNTELEFTEGVGFDKGFLSAYFVTDFDAQQAVLDDPVILLHQEKISSLPDLLPMLEKVAESGKPLLIIAEDIEGEALATLVVNSIRKTLKAVAVKAPFFGDRRKAFLEDLAIVTGGQVINPDTGLLLREVGTEVLGSARRVVVSKDDTIIVDGGGAKDAVANRIKQLRAEIEKTDSDWDREKLQERLAKLAGGVAVIKVGAATETALKERKESVEDAVAAAKAAVEEGIVAGGGSALLQARKALDELRGSLSGDQALGVDVFAEALGAPLYWIASNAGLDGAVAVHKVAELPAGHGLNAEKLSYGDLIADGVIDPVKVTRSAVLNSASVARMVLTTETAVVDKPAEEADDHGHGHHHH
4687310..4688836                   PHAGE_Pelagi_HTVC008M_NC_020484: adenylate/guanylyl cyclase; RC58_21815; phage(gi460042455)     4.96e-23            MDRIWQWVWDRHGAKYPWVIWAFGFTSMFVTYALWSLVITCYERSSHYLEAVVVTGVGVVLQSLVVLPVRRRFRLMRPVSASDQVDRFQALNETYVWSRTARIRQLWFVPIWAATFFAIVSVLAGAHGMRVVEYVIVGGAMGIVTTLISLHTFMEGSLRPVRAALAGDSGIGDALPRSRPTFAWWLEVSMLSALCNFTTAGMMVGALLGRVSDSPLLPLLIACVATAALAAPVTVGAIVSPALHPIRDLAEGTERVAAGDYTRRVPVVQDDDLGALTASFNRMQAGLTERQRLQAAFGTYVDPALAARLLEQGDDVFTGERREVTVMFVDVRDFTPFAEANSAEDTVARLNALFEIVVPAVVDGGGHVNKFLGDGALAVFGAPNDLADHADAAVSAALLIHRLVAKRFGGVLRIGIGINTGVVIAGTIGGGGKLEFTLIGDAVNVAARVEQLTKTTGDAILVTQQTVDALVSRPPGLSDRGTHALKGKSAPTAVFGLDPAVTPSHRLG

#### region 3 ####
4769758..4770345                   PHAGE_Sinorh_phiM9_NC_028676: DNA-directed RNA polymerase specialized sigma subunit; RC58_22180; phage(gi966199376)     3.69e-10            MGFGRNGNGDRSDAELLAAHVAGDRYAFGELFVRHQRHLHRLARLTTRSPEDAEDALQDAMLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRLRRTKAHPTVPLEDIYPVADRTAQVETTLAVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLGYLDAGAHAAAEGAAGQA
4770406..4771053                   hypothetical protein; RC58_22185                                                     N/A                 MATAGNDAADHRNAESDPPLTAELLADLQAGVLDALNRVRREVAALGADPASPPDPPPQVTARVAAALRSAEPVGATPRAAHSARPLAAIGVGTVALLRTPAPAPSTPTDIEHITVSTPPMQIPLSRAEILGLLDRSPDFGPLSDPARRASCLTGLGYPASTPVLGARPVAINARPGVVLVIPGDSPHVLTVYAVSANCSAADTGLLANTEVPRP
4771157..4772167                   PHAGE_Bacill_G_NC_023719: gp344; RC58_22190; phage(gi593777800)                      3.91e-84            MTADTVHDVIIIGSGPAGYTAALYTARAQLAPVVFEGTSFGGALMTTTEVENYPGFRDGITGPELMDQMREQALRFGADLRMEDVESVSLAGPVKSVTTAEGETVRARAVILAMGAAARYLGVPGEQDLLGRGVSSCATCDGFFFKDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRREEFRASRIMLERARANDKITIVTNKAVEAVEGSETVTGLRLRDTVTGETSTLAVTGVFVAIGHDPRSELVRDVLDTDPDGYVLVQGRTTATSIPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEHAESSAAAQGDATEFPGSTDTLIGAPQ
4772164..4772517                   PHAGE_Dinoro_DFL12phi1_NC_024367: putative host-like protein; RC58_22195; phage(gi658311036)     9.34e-14            MTDAEKASATIEVSDASFSTDVLASNKPVLVDFWATWCGPCKMVAPVLEEIASERGDHLTVAKLDVDANPETAQNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDAVPNLG
4772651..4773871                   PHAGE_Bacill_AR9_NC_031039: ss-DNA binding protein; RC58_22200; phage(gi100271)      5.62e-13            MSSPRREYGDALRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFYTGLVDGYFGLQTHNALMSYQREYGLSADGICGPETLRSLYFLSSRVTGGSPHALREEELVRRSGPKLSGKRIIIDPGRGGADHGMIMQGPSGPISEADVLWDLASRLEGRMTAIGMETFLSRPVNRSPLDAERAATANNVGADLMISLRCEAQKSPAANGVASFHFGNSHGSVSTIGRNLADFIQREVVARTGLRDCRTHGRTWDLLRLTRMPTVQVDVGYVTNPHDRAMLVSTQTRDAIAEGILAAVKRLYLLGKNDRPTGTFTFAELLAHELSVERTSQMGGS
complement(4773885..4774637)       acetyltransferase; RC58_22205                                                        N/A                 MSARITPLRLEAFEQLPKHARRCVFWEVDPAVLGNHDHLADAEFEKEAWLSMVMLEWGCCGQVATAIPDERSQAEPPCLGYVFYAPPRAVPRAQRFPTGPVSADAVLLTSMGIEPGPAADDLPHALLARVIDELVRRGVRALEAFGRTPAASELQDPRLVGPDLRPVLEAVGDCSVDHCVMDAEFLKDAGFVVVAPHTYFPRLRLELDKGLGWKAEVEAALERLLESARLEQPVGAASTPANALKTAPPD
complement(4774903..4775889)       PHAGE_Agroba_7_7_1_NC_019519: hypothetical protein; RC58_22210; phage(gi435844368)     1.42e-08            MTQPLRKKGGLGRGLASLIPTGPAEGDAGPATLGPRMGDAAADVLIGGPAPQEASPVGAVYREISPADIERNPRQPRQVFDEEALAELVHSIREFGLLQPIVVRAIKESASGARYQIVMGERRWRAAQEAGLATIPAIVRETGDDNLLRDALLENIHRVQLNPLEEAAAYQQLLDEFGVTHDELAARIGRSRPLITNMIRLLKLPIAVQRRVAAGVLSAGHARALLSLEAGPEAQEELATRIVAEGLSVRATEEAVTLANRAGTTTPTPPRRKPIQMPGLQDVADRLSTAFDTRVTVSLGKRKGKIVVEFGSVDDLQRIIDVMAPPKP
complement(4775925..4776740)       PHAGE_Clostr_phiCD146_NC_028958: putative para; RC58_22215; phage(gi971820185)       6.06e-14            MRILHTTYPPLRRPKHRRVFTVANQKGGVGKTTTAVNLAAALALQGLKTLVIDLDPQGNASTALGITDRQSGTPSSYEVLLGEVSVHDALRQSPHNERLFCIPATIDLAGAEIELVSMVARENRLRTALADLDNLDFDCVFIDCPPSLGLLTINALVAAPEVMIPIQCEYYALEGVSQLMRNIEMVKAHLNPQLEVSTVVLTMYDGRTKLADQVAEEVRRYFGSKVLRTVIPRSVKVSEAPGYSMTIIDYDPGSRGAMSYLDASRELAERD
