gi|00000000|ref|CP010332.1|  Mycobacterium bovis strain 30, complete genome. 4336227, gc%: 65.60%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
1757717..1757730                   attL                                                                                 N/A                 GTCGTCGTCGAGTA
1769238..1769648                   phage protein; RN07_1710                                                             N/A                 MycobacteriumtuberculosisvariantbovisMTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHEHTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPWSRMIGLGGGSPAEDER
1769715..1770578                   phage protein; RN07_1711                                                             N/A                 MycobacteriumtuberculosisvariantbovisMGRKLSRRNKWRRWPPDRGAGAAESQAAAARGAGSWPPGSIFWFGAHGLQTRIRASFDENRHCYRRSPRHLRRHLPAAQTNRQRNPQRRQRNPPVRGETNGAAGRRIAELERPKAKERQREGGRLGASITNAGFGPMEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSWNGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNESTTQPAASWRRGRPGTPKQRPPTPGPILPTR
complement(1770568..1771989)       PHAGE_Gordon_Zirinka_NC_031097: hypothetical protein; RN07_1712; phage(gi100006)     1.21e-79            MycobacteriumtuberculosisvariantbovisMTEFDDIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEELRRYRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGPPQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQEVSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQTAAFVNGSGNGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLSTINTLRQAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQFLIVDRVGSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA
complement(1771997..1772509)       PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; RN07_1713; phage(gi100007)     4.91e-11            MycobacteriumtuberculosisvariantbovisMAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW
complement(1772683..1773153)       PHAGE_Gordon_Kita_NC_031233: methyltransferase type 11; RN07_1714; phage(gi100001)     1.25e-46            MycobacteriumtuberculosisvariantbovisMPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR
complement(1773234..1773548)       phage protein; RN07_1715                                                             N/A                 MycobacteriumtuberculosisvariantbovisMTPINRPLTNDERQLMHELAVQVVCSQTGCSPDAAVEALESFAKDGTLILRGDTENAYLEAGGNVLVHADRDWLAFHASYPGNDPLRDARPIEQDDDQGAGSPS
complement(1773545..1773817)       phage protein; RN07_1716                                                             N/A                 MycobacteriumtuberculosisvariantbovisMAETPDHAELRRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRANCPVDVGKPCPFLIAEGVADSTDDTIEVDQ
complement(1773831..1774226)       phage protein; RN07_1717                                                             N/A                 MycobacteriumtuberculosisvariantbovisMTAVAITPASGGRHSVRFAYDSAIVSLIKSTIPAYARSWSAHTRCWFIDADWTPLLAAELRYHGHTVTGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVLHPDAPTGCPILQQQLNAARTALTNPA
complement(1774223..1774438)       PHAGE_Mycoba_32HC_NC_023602: hypothetical protein; RN07_1718; phage(gi589893405)     1.89e-06            MycobacteriumtuberculosisvariantbovisMISMISTPNVTHVTHFQVRLRARTYGGYTAQTSHASRPAVPFCPGCGTYLAVHGRHRADCTAKPANTGGAA
complement(1774422..1775837)       PHAGE_Bacill_BM5_NC_029069: hypothetical protein; RN07_1719; phage(gi985757876)      3.56e-75            MycobacteriumtuberculosisvariantbovisMADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAATLADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD
complement(1775837..1776235)       phage protein; RN07_1720                                                             N/A                 MycobacteriumtuberculosisvariantbovisMTAGAGGSPPTRRCSATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA
complement(1776232..1776453)       PHAGE_Mycoba_Larva_NC_023724: gp40; RN07_1721; phage(gi593778559)                    4.39e-06            MycobacteriumtuberculosisvariantbovisMSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLAELLRPVRRSGGAR
complement(1776509..1777024)       phage protein; RN07_1722                                                             N/A                 MycobacteriumtuberculosisvariantbovisMSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRAVIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVPRLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC
1776860..1776873                   attR                                                                                 N/A                 GTCGTCGTCGAGTA
complement(1777021..1778412)       PHAGE_Mycoba_PegLeg_NC_021299: integrase; RN07_1723; phage(gi508177970)              2.08e-74            MycobacteriumtuberculosisvariantbovisMRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRRPAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR

#### region 2 ####
4003742..4004089                   PHAGE_Escher_503458_NC_049341: hypothetical protein; RN07_3886; phage(gi100008)      3.74e-05            MycobacteriumtuberculosisvariantbovisMLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR
4004609..4004974                   insertion sequence element IS1533 transposase; RN07_3887                             N/A                 MycobacteriumtuberculosisvariantbovisMLTLPPVGPSIGWRTSTRLPRDHYVRLDGNDYSVHPVAIGRRIEITADLSRVRVWCGGTLVADHDRIWAKHQTISDPEHVVAAKLLRRKRFDIVGPPHHVEVEQRLLTTYDTVLGLDGPVA
4004974..4005720                   PHAGE_Escher_520873_NC_049344: primase; RN07_3888; phage(gi100047)                   1.28e-45            MycobacteriumtuberculosisvariantbovisMAAKTATNSRDVAAELAYLTRALKAPTLRGAIEQLADRARTKTWSYEEFLAACLQREVSARESHGGEGRIRAARFPSRKSLEEFDFDHARGLKRDTIAHLGTLDFVTLAIGIAIRACQAGHRVLFATASQWVDRLAAAHHSGTLQSELIRLARYPLLVVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVIALKGDSYRIKDRDLGRVPTVTADDQ
complement(4005874..4006440)       hypothetical protein; RN07_3889                                                      N/A                 MycobacteriumtuberculosisvariantbovisMAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAANDSAQDGFRHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVHVDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQPSAGQQGPS
complement(4006510..4007739)       PHAGE_Coryne_Poushou_NC_042139: hypothetical protein; RN07_3890; phage(gi100031)     8.31e-133           MycobacteriumtuberculosisvariantbovisMALPQSALSELLDAFRTGDGVDLIRDAVRLVLQELSELEATERIGAARYERSDTRVTDRNGARSRVLSTQAGDVELRIPKLRKGSFFPAILEPRRRIDQALYAVVMEAYVHGISTRAVDDLVEAMGVETGISKSEVSRICAGLDEIVGAFRTRTLGHIEFPYVYLDATYLNVRNGTGQVVSMAVIVASGIAADGSREILGLDVGDSEDETFWRGFLTSLKGRGLGGVRLVISDQHAGLVKALKRCFQGAGHQRCRVHFARNLLAHVPKDKADMVASMFRMIFSAPDAEAVHATWEEVRDRLAASFPKIGPLMDDARAEVLAFTAFPKAHWQKIWSTNPLERINKEIKRRSRVVGIFPNPAAVIRLVGAVLADMHDEWQASERRYLSEASMALLYPDSDNAVVAAISGGQ
complement(4007915..4008550)       PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; RN07_3891; phage(gi526003651)     2.17e-05            MycobacteriumtuberculosisvariantbovisMPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLVAMFKGILDAEPTYDF
complement(4008561..4008755)       hypothetical protein; RN07_3892                                                      N/A                 MycobacteriumtuberculosisvariantbovisMFVQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ
4009150..4009341                   PHAGE_Tsukam_TPA4_NC_030916: putative phosphoesterase; RN07_3893; phage(gi100037)     2.46e-07            MycobacteriumtuberculosisvariantbovisMERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGDIPT
complement(4009352..4009427)       tRNA                                                                                 N/A                 GCCGCCTTAGCTCAGTCGGTAGAGCGATTCACTCGTAATGAATAGGTCAGGAGTTCGATTCTCCTAGGCGGCTCCA
complement(4009506..4010714)       PHAGE_Nodula_vB_NspS_kac68v161_NC_048757: putative replicative DNA helicase; RN07_3894; phage(gi100080)     5.24e-13            MycobacteriumtuberculosisvariantbovisMMSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR
4010797..4012446                   PHAGE_Pelagi_HTVC008M_NC_020484: adenylate/guanylyl cyclase; RN07_3895; phage(gi460042455)     6.06e-20            MycobacteriumtuberculosisvariantbovisMDAEAFVGFRQVPAARYGGLMATTAALPRRIHAFVRWVVRTPWPLFSLSMLQSDIIGALFVLGFLRYGLPPQDNIQLQDLPPVNLLIFVSTVIILFLAGAVVNLKLLMPVFRWQRRDNLLTEPDPAATELARSRALRMPLYRTLISLAVWATGGGVFILASWSVAKHAAPVVAVATALGATATAIIGYLQSERVLRPVAVAALRSGVPENVNAPGVILRLMLAWIPSTGVPLLAIVLAVAADKIALLHATPEALFNPILMMALAALGIGSVSTLLVAMSIADPLRQLRWALSEVQRGNYNAHMQIYDASELGLLQAGFNDMVRELSERQRLRDLFGRYVGEDVARRALERGTELGGQERDVAVLFVDLVGSTQLAATRPPAEVVQLLNEFFRVVVETVARHGGFVNKFQGDAALAIFGAPIEHPDGAGAALSAARELHDELIPVLGSAEFGIGVSAGRAIAGHIGAQARFEYTVIGDPVNEAARLTELAKLEDGHVLASAIAVSGALDAEALCWDVGEVVELRGRAAPTQLARPMNLAAPEEVSSEVRG
