gi|00000000|ref||  Escherichia coli K-12 strain ER3446, complete genome. [asmbl_id: NC_000000].4606859, gc%: 50.81%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
1324309..1324355                   attL                                                                                 N/A                 CTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATT
complement(1324369..1325532)       PHAGE_Shigel_Stx_NC_029120: integrase; SH04_06465; phage(gi985761248)                0.0                 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKKA
complement(1325652..1325915)       PHAGE_Entero_YYZ_2008_NC_011356: putative exonuclease; SH04_06470; phage(gi209427739)     1.19e-57            MKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVIERNEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
1326005..1326241                   PHAGE_Entero_lambda_NC_001416: DNA replication protein; SH04_06475; phage(gi9626296)     1.24e-44            MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV
1326238..1326333                   PHAGE_Entero_lambda_NC_001416: ren exclusion protein; SH04_06480; phage(gi9626297)     1.04e-12            MTGKEAIIHYLGTHKSFCAQDVAAVTGATVI
1326396..1326695                   PROPHAGE_Escher_MG1655: IS3 transposase A; SH04_06485; phage(gi226524700)            5.76e-65            MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK
1326692..1327558                   PROPHAGE_Escher_MG1655: IS3 transposase B; SH04_06490; phage(gi16128284)             0.0                 MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA
1327869..1328201                   PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; SH04_06500; phage(gi311992758)     3.77e-10            MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTPH
1328249..1328398                   membrane protein; SH04_06505                                                         N/A                 MSLVLCFLLMSLFFMYSFVLSRLWRKKIAIRLLLYIQDNVTLIVFLNKK
1328456..1329982                   PHAGE_Burkho_Bcep176_NC_007497: gp53; SH04_06510; phage(gi77864678)                  6.04e-37            MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEIYF
1330447..1330998                   hypothetical protein; SH04_06515                                                     N/A                 MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
1331008..1331805                   transcriptional regulator; SH04_06520                                                N/A                 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE
1332020..1332475                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; SH04_06525; phage(gi401817579)     2.08e-79            MNLSQDGIKLHRGNFTAIGRQIQPYLEEGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKTFATPAWVKDALKHTYLGYETKDLVDVVTGDITTIQSLRHTSDLDTGEMYVFLCKVEAWAMNIGCHLTIPQSCEFQLLRDKQEA
1332475..1332645                   PHAGE_Escher_HK639_NC_016158: NinE; SH04_06530; phage(gi356870663)                   3.91e-20            MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRSHG
1332638..1332928                   PHAGE_Entero_mEp237_NC_019704: hypothetical protein; SH04_06535; phage(gi435439317)     1.77e-61            MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
1332925..1333287                   PHAGE_Entero_mEp237_NC_019704: Holliday junction resolvase RusA; SH04_06540; phage(gi435439318)     7.01e-80            MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE
1333284..1333424                   PHAGE_Entero_mEp237_NC_019704: hypothetical protein; SH04_06545; phage(gi435439319)     2.32e-14            MMFEFNMAELLRHRWGRLRLYRFPGSVLTDYRILKNYAKTLTGAGV
1333510..1333893                   PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; SH04_06550; phage(gi985761278)     3.23e-71            MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN
1334035..1334253                   hypothetical protein; SH04_06555                                                     N/A                 MLGRQRLPQHIFFVIRLELVNQTYSNDVISAYTECFREGANKRGNSSRLTQSFHFFMFEPIFSPVNALNQPI
complement(1334291..1335271)       PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; SH04_06560; phage(gi971482498)     0.0                 MSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH
complement(1335312..1336379)       porin; SH04_06565                                                                    N/A                 MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYARLGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYRNNDFFGLVDGLNFAAQYQGKNDRSDFDNYTEGNGDGFGFSATYEYEGFGIGATYAKSDRTDTQVNAGKVLPEVFASGKNAEVWAAGLKYDANNIYLATTYSETQNMTVFADHFVANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKDLGVWGDQDLVKYVDVGATYYFNKNMSTFVDYKINLLDKNDFTKEGANKSLI
1336952..1337167                   PHAGE_Entero_VT2phi_272_NC_028656: holin; SH04_06570; phage(gi966197762)             4.54e-37            MKSMDKLTTGVAYGTSAGSAGYWFLQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKIKEDKRKAARGE
1337167..1337664                   PHAGE_Entero_SfI_NC_027339: lysozyme; SH04_06575; phage(gi849250312)                 9.49e-118           MPPSLRKAVAAAIGGGAIAIASVLITGPSGNDGLEGVSYIPYKDIVGVWTVCHGHTGKDIMLGKTYTKAECKALLNKDLATVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ
1337661..1338122                   PHAGE_Entero_lambda_NC_001416: cell lysis protein; SH04_06580; phage(gi9626310)      4.72e-105           MSRVTAIISALIICIIVSLSWAVNHYRDNAIAYKVQRDKNARELKLANAAITDMQMRQRDVAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR
complement(1338154..1338447)       PHAGE_Entero_933W_NC_000924: Bor protein precursor; SH04_06585; phage(gi9632515)     5.94e-64            MKKMLLATALALLITGCAQQTFTVQNKQTAVAPKETITHHFFVSGIGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSK
complement(1338738..1339148)       PHAGE_Entero_lambda_NC_001416: putative envelope protein; SH04_06590; phage(gi19263396)     8.37e-96            MAQVAIFKEIFDQVRKDLNCELFYSELKRHNVSHYIYYLATDNIHIVLENDNTVLIKGLKKVVNVKFSRNTHLIETSYDRLKSREITFQQYRENLAKAGVFRWITNIHEHKRYYYTFDNSLLFTESIQNTTQIFPR
1339434..1339640                   PHAGE_Entero_lambda_NC_001416: hypothetical protein; SH04_06595; phage(gi19263397)     5.25e-43            MNKEQSADDPSVDLIRVKNMLNSTISMSYPDVVIACIEHKVSLEAFRAIEAALVKHDNNMKDYSLVVD
complement(1339805..1339999)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; SH04_06600; phage(gi157166037)     1.45e-25            MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKGSGNFSAWVIEACRRRLTSEKRAYTSIKSDEE
1340147..1340248                   DNA-packaging protein; SH04_06605                                                    N/A                 MIIIIILWVLSGDPTGYGAATSRVFAIYENFPV
1340388..1340933                   PHAGE_Entero_lambda_NC_001416: DNA packaging protein; SH04_06610; phage(gi9626244)     4.00e-128           MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDAEIENEKLRREVEELLQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELIPGLLSEYIEQSG
1340908..1341651                   PHAGE_Entero_lambda_NC_001416: Putative fiber assembly protein; SH04_06615; phage(gi9626269)     1.52e-92            MNISNSQVNRLRHFVRAGLRSLFRPEPQTAVEWADANYYLPKESAYQEGRWETLPFQRAIMNAMGSDYIREVNVVKSARVGYSKMLLGVYAYFIEHKQRNTLIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDAEAEKLFRIREAEETKNSLMQVASEHIAPLQDAVDLEIATEEETSLLEAWKKYRVLLNRVDTSTAPDIEWPTNPVRE
1345611..1345657                   attR                                                                                 N/A                 CTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATT

#### region 2 ####
2154766..2154777                   attL                                                                                 N/A                 AAATGGGGCAAA
complement(2154797..2154937)       PHAGE_Entero_phiP27_NC_003356: putative integrase; SH04_10665; phage(gi18249865)     3.14e-16            MTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS
complement(2156034..2156249)       PHAGE_Escher_phi191_NC_028660: hypothetical protein; SH04_10670; phage(gi966198069)     5.01e-05            MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYNYPKINQFIKDS
complement(2156328..2156537)       hypothetical protein; SH04_10675                                                     N/A                 MYKITATIEKEGGTPTNWTRYSKSKLTKSECEKMLSGKKEAGVSREQKVKLINFNCEKLQSSRIALYSN
complement(2156530..2156736)       restriction alleviation and modification protein; SH04_10680                         N/A                 MRKIMRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGGVHV
complement(2156781..2157590)       PHAGE_Salmon_epsilon15_NC_004775: RecT; SH04_10685; phage(gi30387413)                5.85e-107           MTKQPPIAKADLQKTQGNRAPAAVKNSDVISFINQPSMKEQLAAALPRHMTAERMIRIATTEIRKVPALGNCDTMSFVSAIVQCSQLGLEPGSALGHAYLLPFGNKNEKSGKKNVQLIIGYRGMIDLARRSGQIASLSARVVREGDEFSFEFGLDEKLIHRPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIELVRSLSKAGNNGPWVTHWEEMAKKTAIRRLFKYLPVSIEIQRAVSMDEKEPLTIDPADSSVLTGEYSVIDNSEE
complement(2157583..2160183)       PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; SH04_10690; phage(gi100036)     3.50e-90            MSTKPLFLLRKAKKSSGEPDVVLWASNDFESTCATLDYLIVKSGKKLSSYFKAVATNFPVVNDLPAEGEIDFTWSERYQLSKDSMTWELKPGAAPDNAHYQGNTNVNGEDMTEIEENMLLPISGQELPIRWLAQHGSEKPVTHVSRDGLQALHIARAEELPAVTALAVSHKTSLLDPLEIRELHKLVRDTDKVFPNPGNSNLGLITAFFEAYLNADYTDRGLLTKEWMKGNRVSHITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDLDIYNLHPAHAKRIEEIIAENKPPFSVFRDKFITMPGGLDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKPQPSGTTAVEQGEAETMEPDATEHHQDTQPLDAQSQVNSVDAKYQELRAELHEARKNIPSKNPVDDDKLLAASRGEFVDGISDPNDPKWVKGIQTRDCVYQNQPETEKTSPDMNQPEPVVQQEPEIACNACGQTGGDNCPDCGAVMGDATYQETFDEESQVEAKENDPEEMEGAEHPHNENAGSDPHRDCSDETGEVADPVIVEDIEPGIYYGISNENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLEPEEFSNRFIVAPEFNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSDCLNTDEWPAIKTLSLPRWAKEYAND
complement(2160285..2160560)       hypothetical protein; SH04_10695                                                     N/A                 MITNYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLDEGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
complement(2160635..2160811)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; SH04_10700; phage(gi169257260)     7.48e-07            MVMTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL
complement(2160805..2161026)       PHAGE_Shigel_Stx_NC_029120: Kil protein; SH04_10705; phage(gi985761255)              8.80e-44            MIAHHFGTDEIPRQCVTPGDYVLHEGRTYIASANNIKKRKLYIRNLTTKTFITDRMIKVFLGRDGLPVKAESW
2161468..2161956                   PHAGE_Entero_lambda_NC_001416: Superinfection exclusion protein B; SH04_10710; phage(gi19263394)     1.90e-08            MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSFVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKKLERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR
complement(2162562..2163038)       repressor; SH04_10715                                                                N/A                 MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWRFFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPDWVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT
2163162..2163458                   PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; SH04_10720; phage(gi100049)      6.60e-19            MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT
2163481..2163903                   PHAGE_Entero_mEp237_NC_019704: CII protein; SH04_10725; phage(gi435439306)           6.30e-10            MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVIVH
2163916..2164773                   PHAGE_Salmon_SPN3UB_NC_019545: PrpO; SH04_10730; phage(gi423262427)                  6.45e-25            MLFVLILSHRAASYGAIMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWADVEPSLQEFFCDNGEEWVHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVEVVFEHDVNTKATNKDTDKDLKTDPPLNPPRGNRGVKKFDPLDITLPNWISVSLWREWVEFRQALRKPIRTEQGANGAIRELEKFRQQGFSPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG
2164780..2165526                   PHAGE_Shigel_Stx_NC_029120: DNA replication protein; SH04_10735; phage(gi985761263)     1.29e-147           MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK
2165992..2166441                   PHAGE_Entero_lambda_NC_001416: cell lysis protein; SH04_10745; phage(gi9626310)      4.37e-95            MGISALVICIVVCLSWGVNHYRDNAIAYKEQRDKNARELKLANAAITEMQMRQRDVAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLVMMQAQLEGAQQYITEQCLK
2166579..2168036                   potassium transporter TrkG; SH04_10750                                               N/A                 MNTSHVRVVTHMCGFLVWLYSLSMLPPMVVALFYKEKSLFVFFITFVIFFCIGGGAWYTTKKSGIQLRTRDGFIIIVMFWILFSVISAFPLWIDSELNLTFIDALFEGVSGITTTGATVIDDVSSLPRAYLYYRSQLNFIGGLGVIVLAVAVLPLLGIGGAKLYQSEMPGPFKDDKLTPRLADTSRTLWITYSLLGIACIVCYRLAGMPLFDAICHGISTVSLGGFSTHSESIGYFNNYLVELVAGSFSLLSAFNFTLWYIVISRKTIKPLIRDIELRFFLLIALGVIIVTSFQVWHIGMYDLHGSFIHSFFLASSMLTDNGLATQDYASWPTHTIVFLLLSSFFGGCIGSTCGGIKSLRFLILFKQSKHEINQLSHPRALLSVNVGGKIVTDRVMRSVWSFFFLYTLFTVFFILVLNGMGYDFLTSFATVAACINNMGLGFGATASSFGVLNDIAKCLMCIAMILGRLEIYPVIILFSGFFWRS
2168174..2168437                   PHAGE_Vibrio_X29_NC_024369: DNA modification methylase; SH04_10755; phage(gi658311236)     1.46e-26            MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
2168418..2168777                   PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; SH04_10760; phage(gi658307708)     5.45e-07            MSRSSDNDQYRSRNALIRRHIEKMDASLHVGTKEFDISKVSEVDSVDDLLIDNAARYLLKDWKGVGELVNGVEVALEYTAERGIALLKQNPELYWQILAEAASIAQGKEQQKQDTIKKP
2168885..2169085                   PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; SH04_10765; phage(gi100018)     1.04e-08            MLKELLYAYSVISRARRYAGMAGVPLPLSLTEINEYLATHPVLIERDEFEAVIFALDDQYFQEQCV
2169251..2170279                   PHAGE_Escher_HK639_NC_016158: tail length tape measure protein; SH04_10770; phage(gi356870615)     4.20e-25            MAEQTSRLAIIIDSTGAKNNADNLTSSLVKMTQAGETAANSAGKVTKATEDEKNALAKLKAAIDPVGAAIDTVGRRYSELKKFFDKGLIDKEEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQEAQAQAFQRMLDKIDPLAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGHSAMQETRIASLPVTAIPAGMKIPCVTAGSA
complement(2170543..2171523)       PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; SH04_10780; phage(gi971482498)     0.0                 MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVKTLKQNPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ
complement(2171782..2171955)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; SH04_10790; phage(gi157166059)     4.02e-34            MFTTTVVLLRFAFSWIVQFCTGFPVPSFSTPEIFTAIFTPQKSPPEPAGCHNTVLPG
complement(2172343..2173080)       PHAGE_Entero_lambda_NC_001416: hypothetical protein; SH04_10795; phage(gi9626267)     1.41e-17            MALLFAADACLVASSFEADADDADDAAELADDAAAVFEDSALVSDAFAFVSDVFAAEADLAAALACSVASPAFVVAVEADDAALSADFPAAVALAEACPALVDAALADDAAAVFEPAAAEALCPAAVSEDLAFVSDVFAAFAEFPAAVAEEAALLALDDAFVSDDFAASFEAAASRAEVAASDAFVVAVDADVAADCSDAEAFVSDVFAAPALVAAALFEDSAAAALFDASVAFVDAVPALEDAD
2173211..2175208                   PHAGE_Entero_9g_NC_024146: side tail fiber; SH04_10800; phage(gi640885143)           0.0                 MALEDASTTKKGIVQLSSATNSTSETLAATPKAVKSAYDNAEKRLQKDQNGADIPDKGCFLNNINAVSKTDFADKRGMRYVRVNAPAGATSGKYYPVVVMRSAGSVSELASRVIITTATRTAGDPMNNCEFNGFVMPGGWTDRGRYAYGMFWQYQNNERAIHSIMMSNKGDDLRSVFYVDGAAFPVFAFIEDGLSISAPGADLVVNDTTYKFGATNPATECIAADVILDFKSGRGFYESHSLIVNDNLSCKKLFATDEIVARGGNQIRMIGGEYGALWRNDGAKTYLLLTNQGDVYGGWNTLRPFAIDNATGELVIGTKLSASLNGNALTATKLQTPRRVSGVEFDGSKDITLTAAHVAAFARRATDTYADADGGVPWNAESGAYNVTRSGDSYILVNFYTGVGSCRTLQMKAHYRNGGLFYRSSRDGYGFEEDWAEVYTSKNLPPESYPVGAPIPWPSDTVPSGYALMQGQAFDKSAYPKLAAAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTKTTSSFDYGTKSTNNTGAHTHSVSGSTNSAGAHTHSLANVNTASANSGAGSASTRLSVVHNQNYATSSAGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHGHTITVNAAGNAENTVKNIAFNYIVRLA
2175208..2175783                   PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; SH04_10805; phage(gi16129505)     2.23e-138           MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGNALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEEISLLEAWKKYRVLLNRVDTSTAQDIEWPALP
complement(2175881..2176471)       PHAGE_Entero_Mu_NC_000929: Gin; SH04_10810; phage(gi9633542)                         2.74e-29            MSRIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSERPGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGGIDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQVVFERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI
complement(2176788..2177021)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SH04_10815; phage(gi100033)     6.47e-44            MKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKTSWLDNKELLQTAISVLKDNQNLNGKM
2177609..2177620                   attR                                                                                 N/A                 AAATGGGGCAAA

#### region 3 ####
2361652..2361663                   attL                                                                                 N/A                 TAACGGCAGCAA
2370314..2371060                   PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; SH04_11670; phage(gi971760361)     7.34e-10            MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ
2371149..2371835                   GntR family transcriptional regulator; SH04_11675                                    N/A                 MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSDWFSEE
2372012..2372215                   PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; SH04_11680; phage(gi410491512)     4.18e-18            MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLDLIRLGMN
complement(2372250..2373710)       D-mannonate oxidoreductase; SH04_11685                                               N/A                 MGNNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTARVTETYLSLLAHGAKATVAKYSVK
complement(2373799..2375082)       PHAGE_Burkho_phi1026b_NC_005284: gp59; SH04_11690; phage(gi38707949)                 6.73e-28            MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
2375869..2376102                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SH04_11695; phage(gi100100)     6.47e-44            MKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKTSWLDNKELLQTAISVLKDNQNLNGKM
2376419..2377009                   PHAGE_Entero_Mu_NC_000929: Gin; SH04_11700; phage(gi9633542)                         2.00e-29            MSQIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSERPGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGGIDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQAVFERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI
complement(2377107..2377682)       PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; SH04_11705; phage(gi16129505)     5.94e-139           MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEEISLLEAWKKYRVLLNRVDTSTAQDIEWPALP
complement(2377682..2378644)       PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; SH04_11710; phage(gi16129506)     0.0                 MNITALTDNTQGAAGLELYEVYNNGYPTAYGNIIHLKGMTAVGEGELLIGWSGTSGAHAPAFIRSRRDTTDANWSPWAQLYTSAHPPAEFYPVGAPIPWPSDTVPSGYALMQGQTFDKSAYPKLAVAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTETTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSGAFGGTNTSIFPNGYTAISNLSAGIMSTTSGSGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHGHTITVNAAGNAENTVKNIAFNYIVRLA
complement(2378595..2379164)       PHAGE_Entero_lambda_NC_001416: DNA packaging protein; SH04_11715; phage(gi9626244)     7.01e-125           MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIRWYAERDAEIENEKLRREVEELRQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELIPGLLSEYNRADRQYAGGSRS
2379553..2379786                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; SH04_11720; phage(gi157166037)     5.64e-27            MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKGSGNFSAWVIEACRRRLCSEKRVSSEANKEKSDITELLRKQVRPD
2379844..2380254                   PHAGE_Entero_lambda_NC_001416: putative envelope protein; SH04_11725; phage(gi19263396)     8.92e-76            MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTESIQKTTQILPR
complement(2380406..2380579)       gns; SH04_11730                                                                      N/A                 MNIENLKTKAEADISEYITKKIIELKKKTGKEVTSIQFTAREKMTGLESYDVKINLI
complement(2380751..2380927)       hypothetical protein; SH04_11735                                                     N/A                 MTGVNTIMREYPNGEKTHLTVMAAGFPSLTGDHKVIYVAADRHVTSEEILEAAIRLLS
complement(2381252..2381464)       PHAGE_Lactoc_bIL312_NC_002671: Csp; SH04_11740; phage(gi13095918)                    7.23e-20            MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL
complement(2381827..2382324)       PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; SH04_11745; phage(gi16765210)     1.55e-62            MNQIFMVIFLVLSGFIVGNVWSDRGWQKKWAERDAAALSQEVNAQFAARIIEQGRTIARDEAVKDAQQKSAEISARAAYLSDSVNQLRAEAKKYAIRLDAAKHTADLAAAVRGKTTKTAEGMLTNMLGDIAAEAQLYAEIADERYIAGVTCQQIYESLRDKKHQM
complement(2382321..2382854)       PHAGE_Entero_mEp460_NC_019716: endolysin; SH04_11750; phage(gi428782372)             1.16e-121           MNTKIRYGLSAAVLALIGAGASAPQILDQFLDEKEGNHTMAYRDGSGIWTICRGATVVDGKTVFPNMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQVIRRDQESALTCWGIEQ
complement(2382851..2383162)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; SH04_11755; phage(gi428782371)     4.48e-40            MTQDYELVVKGVRNFENKVTVTVALQDKERFDGEIFDLDVAMDRVEGAALEFYEAAARRSVRQVFLEVAEKLSEKVESYLQHQYSFKIENPANKHERPHHKYL
complement(2383167..2383382)       PHAGE_Entero_mEp460_NC_019716: porin; SH04_11760; phage(gi428782370)                 1.40e-42            MKSMDKLTTGVAYGTSAGNAGFWALQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKIKEDRRKAARGE
complement(2384136..2384351)       PHAGE_Lactoc_bIL312_NC_002671: Csp; SH04_11765; phage(gi13095918)                    3.54e-20            MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKGPAAANVIITD
2384652..2384864                   cold-shock protein; SH04_11770                                                       N/A                 MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEEITTGLRVEFCRINGLRGPSAANVYLS
complement(2385286..2386038)       PHAGE_Entero_mEp460_NC_019716: late gene regulator; SH04_11775; phage(gi428782366)     2.75e-177           MNLEALPKYYSPKSPKLSDDAPATGTGCLTITDVMAAQGMVQSKAPLGLALFLAKVGVQDPQFAIEGLLNYAMALDNPTLNKLSEEIRLQIIPYLVSFAFADYSRSAASKARCEHCSGTGFYNVLREVVKHYRRGESVIKEEWVKELCQHCHGKGEASTACRGCKGKGIVLDEKRTRFHGVPVYKICGRCNGNRFSRLPTTLARRHVQKLVPDLTDYQWYKGYADVIGKLVTKCWQEEAYAEAQLRKVTR
complement(2386052..2387101)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; SH04_11780; phage(gi428782365)     2.41e-140           MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGEQTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
complement(2387103..2387381)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; SH04_11785; phage(gi401817580)     1.22e-15            MARNAKYYNSDNSPVLACTHGRYSHAFKSEWFQHPPCTAEQAEWLIHSYRRRGFEVKKALSLDYRHWIISVRLPYSERPPRASRTFQQRIWR
complement(2387448..2387699)       hypothetical protein; SH04_11790                                                     N/A                 MMNIEELRKIFCEDGLYAVCVENGNLVSHYRIMCLRKNGAALINFVDARVTDGFILREGEFVTSLQALKEIGIKAGFSAFSGE
complement(2387916..2388071)       PHAGE_Entero_933W_NC_000924: host killer protein; SH04_11795; phage(gi9632541)       1.00e-25            MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(2388143..2388430)       RelE toxin; SH04_11800                                                               N/A                 MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
complement(2388430..2388669)       bifunctional antitoxin/transcriptional repressor RelB; SH04_11805                    N/A                 MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
2389202..2389534                   protein flxA; SH04_11810                                                             N/A                 MSVTIQGNTSTVISNNSAPEGTSEIAKITRQIQVLTEKLGKISSEEGMTTQQKKEMAALVQKQIESLWAQLEQLLRQQAEKKNEDATVQPDKKEEKKDDTNTAGTIDIYV
complement(2390417..2390647)       PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; SH04_11820; phage(gi422936651)     7.84e-12            MLKTDALLYFGSKTKLAQAAGIRLASLYSWKGDLVPEGRAMRLQEASGGELQYDPKVYDEYRKTKRAGRLNNENHS
2390731..2391138                   PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; SH04_11825; phage(gi401817574)     7.67e-41            METKNLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGDSEPTGKNLFALSKVLQCSPTWILFGDEDKQPTPPVEKPVALSPKELELLELFNALPESEQDTQLAEMRARVKNFNKLFEELLKARQRTNKR
2391305..2391460                   PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; SH04_11830; phage(gi472340166)     5.10e-12            MDTIDLGNNESLVYGVFPNQDGTFTAMTYTKSKTFKTENGARRWLERNSGE
2391620..2391838                   hypothetical protein; SH04_11835                                                     N/A                 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAAALSIARMITYPR
complement(2391842..2392135)       hypothetical protein; SH04_11840                                                     N/A                 MVNLTTRCPQRGRNNPAILTAAPFRGLPQPEAHGRRKFNDRLSMNQLPRHALSRYGLTFQGNILSVNCQFRMRTRVRRTHSTSPVENSLITNLSFVD
2392406..2392594                   cell division inhibition protein DicB; SH04_11845                                    N/A                 MKTLLPNVNTSEGCFEIGVTISNPVFTEDAINKRKQERELLNKICIVSMLARLRLMPKGCAQ
2392591..2392782                   hypothetical protein; SH04_11850                                                     N/A                 MNSAFVLVLTVFLVSGEPVDIAVSVHRTMQECMTAATEQKIPGNCYPVDKVIHQDNIEISAGL
complement(2393094..2393405)       hypothetical protein; SH04_11855                                                     N/A                 MLNPPNGVQLKLRIHGVNFWHFHQRFNDMSVECCHVFLQQFLCANNHINGDVFTCVELNHDSVLYFRGQLVKSDVHRIGFSLNRDKRSRLLIPAVFLHIFSIP
2394189..2394200                   attR                                                                                 N/A                 TAACGGCAGCAA
2394309..2395505                   PHAGE_Entero_YYZ_2008_NC_011356: putative integrase; SH04_11865; phage(gi209427727)     2.12e-174           MITDVWKYRGKSTGELRSSVCYAIKTGVFDYAKQFPSSRNLEKFGEARQDLTIKELAEKFLALKETEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSREEFIRLIDACRNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVALLNTQLSEFAPTMPHNEAMKN

#### region 4 ####
3208057..3208989                   PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; SH04_15850; phage(gi966197797)     0.0                 MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAENIKKNYKNPA
3209065..3209139                   tRNA                                                                                 N/A                 GTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCA
3209110..3209125                   attL                                                                                 N/A                 TTGCAGGTTCGATTCC
3209301..3210458                   PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; SH04_15860; phage(gi16130281)     0.0                 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE
3210611..3210973                   PHAGE_Shigel_SfIV_NC_022749: putative flippase; SH04_15865; phage(gi557307553)       7.29e-74            MLKLFAKYTSIGVLNTLIHWVVFGVCIYVAHTNQALANFAGFVVAVSFSFFANAKFTFKASTTTMRYMLYVGFMGTLSATVGWAADRCALPPMITLVTFSAISLVCGFVYSKFIVFRDAK
3210970..3211890                   PHAGE_Shigel_SfIV_NC_022749: bactoprenol glucosyltransferase; SH04_15870; phage(gi557307552)     0.0                 MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK
3211887..3213218                   PHAGE_Shigel_SfIV_NC_022749: serotype specific glucosyltransferase; SH04_15875; phage(gi557307551)     2.11e-92            MNKAIKVSLYISFVLIICALSKNIMMLNTSDFGRAIKPLIEDIPAFTYDLPLLYKLKGHIDSIDSYEYISSYSYILYTYVLFISIFTEYLDARVLSLFLKVIYIYSLYAIFTSYIKTERYVTLFTFFILAFLMCSSSTLSMFASFYQEQIVIIFLPFLVYSLTCKNNKSMLLLFFSLLIISTAKNQFILTPLIVYSYYIFFDRHKLIIKSVICVVCLLASIFAISYSKGVVELNKYHATYFGSYLYMKNNGYKMPSYVDDKCVGLDAWGNKFDISFGATPTEVGTECFESHKDETFSNALFLLVSKPSTIFKLPFDDGVMSQYKENYFHVYKKLHVIYGESNILTTITNIKDNIFKNIRFISLLLFFIASIFIRNNKIKASLFVVSLFGISQFYVSFFGEGYRDLSKHLFGMYFSFDLCLYITVVFLIYKIIQRNQDNSDVKH
3213517..3213861                   PHAGE_Shigel_SfIV_NC_022749: tail fiber assembly protein; SH04_15880; phage(gi557307548)     3.43e-57            MILDRHITSRGYVCMRPATIAPLTPYDKWDGEKWVTDTEAQHSVAVDAAEAQRQSLIDTAMASISLIQLKLQAGRKLMQAETSRLNTVLDYIDAVTATDTSTAPDVIWPELPEE
complement(3213833..3214273)       PHAGE_Shigel_SfIV_NC_022749: tail fiber assembly protein; SH04_15885; phage(gi557307547)     8.22e-20            MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
complement(3214300..3214902)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SH04_15890; phage(gi557307546)     7.33e-59            MLPLVIPRTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKLDGTVQKALENLGLGEAAKRNVGTGANQIPDMGSFMLSASVPGYQKLPSGLIIQWGPIDVPLTSQDTVTYFPIAFPNRCLRVFATQDYTPGSANVGYIACAGYNQDPVKFISRAGVPGIGASFFALGC
complement(3214868..3215143)       PHAGE_Entero_SfV_NC_003444: DNA adenine methylase; SH04_15895; phage(gi19549028)     3.29e-61            MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYPW
complement(3215143..3215631)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SH04_15900; phage(gi557307568)     1.14e-110           MSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
complement(3215634..3216002)       PHAGE_Shigel_SfIV_NC_022749: replication protein; SH04_15905; phage(gi557307567)     9.77e-88            MTCAQWLWKKIIALYEQAAECDGEVVRPKEPNWTAWANEIRLMCVQDGRTHKQICEMYSRVSRDPFWCRNVLSPSKLREKWDELSLRLSPSVSTYTEKREDPYFKASYDNVDYSQIPAGFRG
complement(3216153..3216335)       hypothetical protein; SH04_15910                                                     N/A                 MRRMFISLTLRSFRQRHFLNCQTLTRQNLTHQNLTRQNLMRRNLAKNRVFTRQNLAGIRQ
3216361..3216723                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SH04_15915; phage(gi557307560)     2.45e-80            MASERSTDVQAFIGELDGGVFETKIGAVLSEVASGVMNTKTKGKVSLNLEIEPFDENRLKIKHKLSYVRPTNRGKISEEDTTETPMYVNRGGRLTILQEDQGQLLTLAGEPDGKLRAAGH
3216789..3217613                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SH04_15920; phage(gi557307559)     0.0                 MSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHDLEKFNLNRFRFRGALSTASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEPGHADNTATLKLKKTAPFSALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDAIQATKAAAAIRKITIEANQTADFEDNDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKERPFKLRLSIITGDRPVLVLRIIQLEAVQEDMANEFRDLLVEKFKDSKVETFIGTFTA
3217741..3218277                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SH04_15925; phage(gi557307558)     3.51e-129           MSFIKTFSGKHFYYDKINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELRKCA
3218268..3218630                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SH04_15930; phage(gi557307557)     3.23e-82            MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLVRKFDALEAKCAALENKIIPVSAELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA
3218630..3218935                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SH04_15935; phage(gi557307556)     3.43e-67            MTTFTNKELIKEIKERISSLEVRDDIERRAYEIALVSLEVEPDEREAYELFMEKRFGDLVDRRRAKNGDNEYMAWDMTLGWIIWQQRAGIHFSTMSQQEVK
3219032..3219047                   attR                                                                                 N/A                 TTGCAGGTTCGATTCC
3219067..3219267                   PHAGE_Entero_HK633_NC_019719: hypothetical protein; SH04_15940; phage(gi428782548)     4.73e-44            MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRANG
complement(3219451..3220386)       PHAGE_Burkho_phi1026b_NC_005284: gp58; SH04_15945; phage(gi38707948)                 4.08e-16            MEPLREIRNRLLNGWQLSKMHTFEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQLFVRSHRKVELTHEGKRVYWALKSSLDTLNQEILDIKNQELSGTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTVLTGNDNVNLQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSPEYAQRHALTNTVINLCHCTLLHDRQAWSNDSGTDEWHSWAQHYAVNLPTSSGIGFDRSDLAVIAAMNHIGVAMGRKRLVQKRLASGELVAPFGDMTVKCHQHYYITTLPGRQWPKIEAFIIWLREQVKTTS

#### region 5 ####
4436628..4436640                   attL                                                                                 N/A                 AGGTTTAATTCCC
4438901..4439560                   PHAGE_Bacill_G_NC_023719: gp249; SH04_21975; phage(gi593777705)                      1.61e-09            MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
4439664..4440638                   bifunctional glyoxylate/hydroxypyruvate reductase B; SH04_21980                      N/A                 MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFAEAEGLLGSNENVNAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD
complement(4440688..4441398)       hypothetical protein; SH04_21985                                                     N/A                 MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
4441832..4442122                   PHAGE_Burkho_BcepC6B_NC_005887: putative prophage repressor protein; SH04_21990; phage(gi48697234)     8.39e-06            MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKGTGLKIDDFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME
4442403..4442615                   PHAGE_Lactoc_bIL312_NC_002671: Csp; SH04_21995; phage(gi13095918)                    2.59e-24            MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL
complement(4442802..4442954)       PHAGE_Escher_P13374_NC_018846: prophage host toxic membrane protein; SH04_22000; phage(gi410491667)     1.35e-05            MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQESYELAAFLACKLKE
4443034..4443555                   PROPHAGE_Escher_MG1655: IS150 transposase A; SH04_22005; phage(gi16131428)           2.00e-124           MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMYLKKLKALAHPTKK
4443189..4443201                   attR                                                                                 N/A                 AGGTTTAATTCCC
4443552..4444403                   PROPHAGE_Escher_MG1655: IS150 transposase B; SH04_22010; phage(gi16131429)           0.0                 MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV
