gi|00000000|ref|CP010841.1|  Bordetella pertussis strain H380, complete genome. 4104286, gc%: 67.71%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
791552..791563                     attL                                                                                 N/A                 GGCGTTTCGCGA
792765..792776                     attL                                                                                 N/A                 TGAAGCCGGCGC
796454..797434                     PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; RD07_03835; phage(gi100018)     3.32e-16            MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTSR
complement(797447..799588)         TonB-dependent receptor; RD07_03840                                                  N/A                 MICYIVSFNENGTSFYREGNMRFERHPLSAALALALAWQGAHAQASADGTSEAATLAPITVSASPLAGDLDSMTAPAAVLEGDQLLLRRQGTLGDTLDGLPGVHADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLRGPATLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAVRVEGLKRRSSDYRVPDWPDGKLAGSYSESGQGTVGMSWITPRGYVGVAFTHLESKYGLPGHNHEYEGCHPHGSHLHCGGHDDHGHGHDEHEEGEAEHDHGHEHGAGDVPYVKLRSNRTDLRAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWHGVVGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRFELGARQDWQRVSPQSGAPASRTAGTSLSAAAIWDFAPQYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDPGLDRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDRYEDFRLIEYTQRDAEFTGVEGEVRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVEYFHVYRQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFISTVAPLPGRSVLLGVRLTY
complement(799637..800575)         nickel transporter; RD07_03845                                                       N/A                 MLVLGCLAALPAAAQGAHPFGVPEATGAPGWLAGWFGQVAMWQAHFYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHALGPGHGKAVIASYVLANRQTARNGAWLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSLLGAWLVWQKALRPWWGSKGGHGHGHHAHHHAPGCACGHAHAPSARQAAGPLNARKAWAAILAVGLRPCSGALIVLVFALAQGFFLAGVVATLAMGLGTGLTVATLVALAAGARDAATRLGARLSTRRAAMLRQAIEALAAVAVLLLGLSLLGGQLAALR
complement(800596..801264)         hypothetical protein; RD07_03850                                                     N/A                 MERAATRRRLAALTALGALWAAGAGAHPHMWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSRKPGGGLPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTLPFGPPRDAAVSFEDGRLTLAFTLPLAEPAPAGGATAVDIYDPTYFVAYAFDEVGATALRGAPAGCSQAYRPPRPLDWATMQQLAAIPADPEALPEELFAITKGLTHRIEVTCP
complement(801225..802160)         ABC transporter substrate-binding protein; RD07_03855                                N/A                 MKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDVAVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNGLDFEAWLPRLQKAAGFAGRTVVASEGIEPRRLDDAHEEHGDHDHGHHGEHGHHHHGDLDPHAWQDLANGATYARNIARAFAEADPAHAQAYRQRADAYVARIEALDQRVRQLFGAIEPARRKVVSSHDAFGYFGQAYGVRFVALAGVSTDAEPSAADMARIIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYSDALAQPGKPAGTYLGMFEWNAQQLAAALRP
complement(802157..803053)         zinc ABC transporter permease; RD07_03860                                            N/A                 MTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSLMGDAMAHAILPGVAAGYLLSGLSLGAMMAGGLLTGLAVALLAGLVARLTPLREDASFASFYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVANATLCILALAYRLLVAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWAGSAPGQIALAAVSACAASAVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVAARRARRARPWQPEGDLP
complement(803050..803772)         PHAGE_Bacill_G_NC_023719: gp245; RD07_03865; phage(gi593777701)                      1.04e-17            MAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAGKSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQASELERGFPITVADMVALGAWGRVGAWRRFDAAETARVHAALRRVGLQELAGRALATLSGGQMQRALFARLLLQDAPLLLLDEPFSAIDAATTDVLLALLREQHAEGRTVIAVLHDLDLVRRHFPRTLLLAGRQVAWGETGQALGDANLARARGLAMREAA
complement(803763..803963)         hypothetical protein; RD07_03870                                                     N/A                 MRHPARTHRALPVSLSRLSRFYTPLRRGPRPPHSVLRAGAGARLAAAVLAAAGLWGLTLWALGAWP
804101..804604                     hypothetical protein; RD07_03875                                                     N/A                 MSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLLVHGRSLKAYELLEAMRAEHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWSACHDAAGEPHDLLVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPAQAHGHTHSHH
804881..805996                     cobalamin biosynthesis protein CobW; RD07_03880                                      N/A                 MNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIENEFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGDLMRTLSDLRARREAGELSFERVIIETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQEEAQKQVGFADRILVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPAFLADEHPDAAHDHHDHDHGHGHDHDHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFRSNKPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINRRMLFQGVHMMMGAEPGKAWTAAEKPSTKMVFIGRKLPQEIFTRGLEQCLVG
806139..806603                     molecular chaperone DnaK; RD07_03885                                                 N/A                 MATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFKERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQAIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD
806751..807290                     PROPHAGE_Escher_Sakai: ATP-dependent protease peptidase subunit; RD07_03890; phage(gi15834113)     1.01e-79            MEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTVRKIRRLYHDKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVADTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEIAGDLCIYTNQNHVIETLGA
807312..808646                     PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; RD07_03895; phage(gi15834112)     0.0                 MSANHMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL
complement(808660..808965)         RND transporter; RD07_03900                                                          N/A                 MAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAAGKVSIKHDAISALDLPAMTLVYQIDPALLAGIKPGDKVRFTATRKDGRYVVTAISK
809293..809304                     attR                                                                                 N/A                 TGAAGCCGGCGC
809390..809971                     cobalamin adenosyltransferase; RD07_03905                                            N/A                 MANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSVLGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPGHIALADEQVAHLDARLAHYNAGLAPLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLFVLARHVNQAQGARDVYWASRHARPAGRLAVKIQ
810053..811003                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_03910; phage(gi52430457)     2.98e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
811005..811069                     attL                                                                                 N/A                 TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCC
811102..812052                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_03915; phage(gi52430457)     2.98e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
812054..812118                     attR                                                                                 N/A                 TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCC
812151..813101                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_03920; phage(gi52430457)     2.98e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(813542..814447)         PHAGE_Synech_S_SM2_NC_015279: 6-phosphogluconate dehydrogenase; RD07_03930; phage(gi326781984)     2.19e-07            MATIGSKTYDTTTPRNVAFLGLGVMGLPMAGHLARAGHQVTVYNRTAAKAQAWAAEFGGKAAATPREAAAGAQIVFCCVGNDDDLRSVVLGADGAFAGMQAGAVFVDHTTASADVARELYAAARELNLQFIDAPVSGGQAGAVNGALTIMCGGDSATFEDIKPVAHAFGRAVTLVGPPGAGQLAKMVNQVCIAGVVQGLSEAIAFGQTAGLDMKLVLDVISKGAAQSWQMENRGATMVDDQFDFGFAVDWMRKDLGLVLAEARNNGARLPLTALVDQFYGDVQKMGGNRWDTSSLIKRLRD
complement(814503..816107)         gamma-glutamyltransferase; RD07_03935                                                N/A                 MKFDWNNPYPSTRIPVFARNVVATSHPLAAQAGLRILALGGNAADAAVASAATLALVEPASNGLGSDCFALVWDGARLHGLNASGTAPAAWSPGYFQRKHQGAIPLRGWDSVTIPGCVAGWASLHDKLGSLPFADVLAPAIEYAERGFAVPPTVQRRWADQVDPLRSLPGFAEHFLPHGRAPEVGEHFVLAGAAATLRRIAASGGRDFYEGETAQKLVAHAQAHEAALTLGDLRDYAPQWVEPISQAYRGHALHQLPPNGQGLAALIALGIVEHFDLASRPAEHPDTQHILIEAMKLAFADVHAHVADAAHIRIRVEQLLDPAYLAERARLIDLRRARVYNAAQAPQGGTVYLACADRNGMMVSFTQSNYMGFGSGIVVPGTGISLQNRGCCFSMDPDHPNVVGGGKRPFHTGIPAFLTQDGAPLMSFGIMGGNMQPQGHLQALVRMLDYRQQPQAACDAPRWKWNRGLSVDIEAAMPAQVTDALRARGHIVEVAAPADKDFGSGQFIWRLGDPAVDGYVAASDSRRDGLAAGF
816287..816298                     attL                                                                                 N/A                 GCGAAGCCGAGG
complement(816364..817869)         hypothetical protein; RD07_03940                                                     N/A                 MELFDNLMLGFSVAFTPENLAYALLGCILGTLIGVLPGIGPVPTIAMLLPITYVLPPVAGLIMLAGIYYGAQYGGSTTTILVALPGETSAVVTVLDGHQMARNGRAGAALAIAALGSFFAGCVATLLLAAFAPPLAEVSFKFGPAEYFSLMVLGLVGAVVLASGSLPKAIAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEIMTNLEQKENRVDITDKIGSLYPNFQEFKEAAPAVVRGTALGSALGILPGGGAVLSSFASYTLEKKISKNPERFGKGHPAGLAGPESANNAAAQTSFIPLLTLGIPGNAVMALMVGAMTIHNIQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLIGLWVKLLKVPYRILFPAILVFCTIGVYSLNYNTFDIFMTAAFGVVGYVWAKLKCEGAPLLLGLVLGPMMEENFRRALLLSRGDFSTFVTRPLSATLLAVALFLVVLVALPAIRKKREETFVEEE
complement(817884..818348)         tricarboxylate transporter; RD07_03945                                               N/A                 MQLRNRQDFWSGVMFIVLGLGFSWQASSYQMGTAARMGPGYFPFWLGLVLALLGAIVLISALSKKATETAVEGFDWRIVFLVVGSVVLYALILKPLGVYLSVFILVVVSSLASHEFSWKVAVANGIFLVVFSYLAFIKGLGLIFPLWPSFLGMN
complement(818638..819588)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_03950; phage(gi52430457)     1.10e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
819621..819693                     attL                                                                                 N/A                 GGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGCCG
819751..820281                     hypothetical protein; RD07_03955                                                     N/A                 MQVLPNIAVFLSLREEARSVPGWFTIAPMLQDLDQLAARIGQLVQRTRHLHAERDALRVRLNDSESEQRKLKQRCADFETELQALQARLREHDGATATQLAEAQQTEVALREQLAREAAERQALESRVSAREAELQGNLRARDTDLQRLRVAASTARERIDAVLARLPGAPAGEQP
820281..820592                     cell division protein ZapA; RD07_03960                                               N/A                 MERVDVTILGRDYSLACSAEEKPVLMAAVRHVDQLMLRIQGSGKVSSNERIAVMAALQVAGELLAMKAPDGPLGGLAVGDFKRRIEEMNLMLDDALSGQEKLL
complement(821037..821987)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_03965; phage(gi52430457)     3.36e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
822020..822092                     attR                                                                                 N/A                 GGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGCCG
822449..822460                     attR                                                                                 N/A                 GCGAAGCCGAGG
822489..822500                     attR                                                                                 N/A                 GGCGTTTCGCGA

#### region 2 ####
1455602..1455667                   attL                                                                                 N/A                 TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCA
1455699..1456649                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; RD07_06965; phage(gi971753894)     2.86e-11            MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(1456658..1457353)       transcriptional regulator; RD07_06970                                                N/A                 MPDYRPTVLIVEDDAHIRRFVRSALEAEGCEVHETDTVRRGLIEAGTRQPDAVVLDLGLPDEDGMALLRELRGWTELPVLVLSARSSEGDKIAALDAGADDYLTKPFGVGELLARLRVLLRRHARGGAGNAAQAGFGDVQIDLARRVVTRAGEHVHLTQIEYRLLAALVASRGKVMTHRELLREVWGPSHVESHHYLRIYMGHLRQKLEADPARPRYLLTEIGVGYRYAGE
complement(1457395..1460109)       histidine kinase; RD07_06975                                                         N/A                 MADPGNDRLDPDRLLQTLEQAQSDARRGRLRIYFGACAGVGKTYAMLAAARAQAAQGVDVVAGLVETHGRADTAALLDTLPALPLQTLDFQGRRLREFDLQATVARRPRLLLLDELAHTNAPGARHAKRWQDVEELLAAGIDVWTTLNVQHLESLNEAVGGITGVRVRETVPDSVFDAADEIILVDLSADELLRRLREGRVYVPEQARHASRHFFRKGNLIALRELALRRTAEHVDDDVRAYRHERAIEPVWRTREAVVACIDADPHAEHVLRSAHRLAQQLDCEWHAITIEAPRVAPLPRAGRARLDQALALAETLGAHVETVAGTDMVDAATRYMRRHNITKAVVGRDAWRRRGLSGLLDAALTPGRLLRRRSFADVLASACPEADIVRVGAPSAATAAPRRDPRSWRNASAPAGHAAAGAYLWALAYCAAATLASRLAFPVLHQTNIVMIFLLAVVAAALRHGRGPAALASVVSVALFDFFFVQPLASFAVSDVQYLLTFAVLLTVGLLIGQLTAGLRQQARAAARREADARGLYEFARELSAALQPEQIAGAASAFLNAAFGARGALYILGLDDRLRLAPGAGDAALEPTLAQWAFDHGQACGAGTDTLSNSPVLYLPLRAPMRVRGVLALHHAGPPLYSAAPARRQLDAYATLIAIAIERLHYVEVAQQALLSIESERLRNALLAAVSHDLRTPLTSLLGMAETLQRSPAAMTPAALETVAAMQDQARRMHALVVNLLDMARLQSHDAPLRRQWQSVEELVGSALAAMNAALQDRPVTVAPLSALPLVKCDGILIERVLCNLLENAAKYTPPGSAIHIDALADAHTLQVRVADDGAGVAQADRQRIFEKFARGQRESAPPPAQASGWRYAAPSWTPTRAASGSSRPGACAAPASSSRCR
1460168..1460179                   attL                                                                                 N/A                 CGCCGCTTCAGC
complement(1460175..1460774)       potassium-transporting ATPase subunit C; RD07_06980                                  N/A                 MTMHPPLPPAGRPLRAALVIFLALSVLVGLLYPLATTGVARLLWPFQAGGSLLEQDGRVVGSALIGQSFTDPRYFWGRPSATAPMPYNAAASGGSNLGPANPALAQAVRARIAALRAADPGNPAPIPVDLATASGSGLDPHISPAAAGYQAARVARARGLPTATVEQLIARHTERPVPDILGEPVVNVLALNLALDRLR
complement(1460785..1462950)       potassium-transporting ATPase subunit B; RD07_06985                                  N/A                 MANSPTPLSAQAGLPAASPSLPAATPHRAFGLWSRALAGPALRDTLRKLSPAAQLRNPVMFVVYAGSILTTLLWLLALAGLAEAPAGFILAVAAGLWFTVLFANFAEALAEGRGRQQAAALRGLRTTIEARVLTGFRDSDAAAALPPYWRSRATSRPSGALRRDDVVLIEAGETVPGDGQVIAGIASVDKSAITGESAPVIRAAGSDFCSVTGGTRVLSDWIFVRIAADPGDSFLDRMIAMVESARRQKTPNELALTILLVGLTLVFLLVVASLLPFSMYAVSASGAGQAVSITVLVALLVCLIPTTIGGLLSAIGVAGMSRMMRANVIATSGRAIEAAGDVSVLLLDKTGTITFGNRQAAAFVPAPGVSPAVLAEAARLASLADETPEGRSIVALAERILDTRSEAPAGARFVPFSAQSRMSGVDLDGRLIRKGAADALARWLGEGQGGLPAAVARDVDDVARRGSTPLVVAEGGQALGVIELKDIVKPGIQPRFAALRRMGIKTVMITGDNALTAAAIAAEAGVDDFLAEATPQAKLELIRACQADGHLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGALTTFSVANDVAKYFAIIPAAFMAVYPQLAQLNVMGLATPASAILSAVIFNALIIVALIPLALKGVRYRPLGAAVLLRRNLLVYGLGGLLAPFAGIKLIDMALAALGWT
complement(1462974..1464758)       ATPase; RD07_06990                                                                   N/A                 MNADFLGLLLLYLAILLCAAPLLGRHIRQAINGERTWLTAWGQPLERGLYRLAGVDPAAEMDWRRYAVAMLVFNVLGVLAVYALQRLQGWLPLNPAGLPGVAPDSALNTAISFVTNTNWQGYAGESTMSYLTQMLALTVQNFVSAATGIAVLIALVRGLARHSAATLGNFWADLVRATLYVLLPLSFILALALVSQGVVQNLDPYVEAQTVQAQQYETARLDAQGQPMTGPAGQPLTDTVVTRVQTLPMGPVASQEAIKLLGTNGGGFFNANSAHPYENPNAWSNLLEMLAILLIPAALCWTFGEMVGSRRQGVAILAAMTVLFAGFAASAAYFEQQPTPALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSFSALGGVTPLLQMQLGEVIYGGVGSGLYGMLAFAILAVFIAGLMIGRTPEYLGKKIEALDMQMVALVILATPALVLAGTAVAVLADAGRAGVLNPGAHGFSEILYAMSSAANNNGSAFAGLSANTPFYNVLLGLAMWFGRYTIIVAILALAGSLAAKPRLPASVGGMPTTGPLFVALLVGAVLLVGALTYVPALALGPVAEHLQP
1465542..1465814                   hypothetical protein; RD07_06995                                                     N/A                 MPESRVKSEPSPAPYWRRNVRLIVLLLACWAGLTFVPAYFARQLAFDFIGWPFSFWMAAYGAPLAYLILIVIYALVMNRFDARSRTRRDD
1465814..1467880                   PHAGE_Aeromo_44RR2.8t_NC_005135: hypothetical protein; RD07_07000; phage(gi37651715)     6.58e-08            MPFTGNTPQEFEQRLRRIYTLYTLGFILLVLLLALAELMGMARSWIGYVFLLVTVSLYACIGIVCRTSDQVEYYVAGRRVPAFYNGMATAADWMSVASFIGVAGTLYLTGYGGLAYIMGWTGGYVLVALLLAPYLRKFGQYTIPDYLGARYGGKLPRLAGVFCAILCSFTYLVAQIYGVGIITTRLTGISFELGIFVALGGMLVCSFLGGMRAVTWTQVGQYIILVIAYLVPVVWLSVKHTGMPVPQLSAGTVLQEITEKEVYLAHDPGERAVRQLWRSRADEMDERLRALPDSLAHEKDRLRGRLAQLNASDAPMVEIRSLERELASYPATVEEARTLWSQARAAFEARATPPVPHAEPFPAEDPRERENMRINFLALVLCLMLGTAGMPHILMRSYTTPSVGEARRSVCWSLLFILLLYFMAPALALLVKYEVYTQVVGTSFLSLPSWVHAWSAVDIHLLDVLDVNRDGIVQLGEISMGADVVVLAMPEIGGLPYVVSGLVAAGGLAAALSTADGLLLTLSNSLSHDTWYRVVSPRMSAGRRVMVSKILLLLVAFGAAWVAARKPADILFMVSAAFSFAASSFFPALVMGVFWRRANKWGATLGMFAGLAATFAYMAHTHPWLREWVFGVTRAEPVDLWWGIQPVAAGVFGAPMAFLTIIVVSLLTPRPDSATEALVDYLREPGGR
complement(1467877..1468779)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; RD07_07005; phage(gi971753894)     2.08e-11            MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
1468815..1468857                   attL                                                                                 N/A                 TATGGGTGTTCATCCGGCCGGGCTCCTTGAGTGAACTGGGGGG
complement(1468926..1469828)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; RD07_07010; phage(gi971753894)     1.89e-11            MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
1469864..1469906                   attR                                                                                 N/A                 TATGGGTGTTCATCCGGCCGGGCTCCTTGAGTGAACTGGGGGG
1469909..1469979                   attL                                                                                 N/A                 GGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGC
complement(1469975..1470925)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; RD07_07015; phage(gi971753894)     2.83e-11            MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
1470958..1471028                   attR                                                                                 N/A                 GGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGC
complement(1471041..1471373)       PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; RD07_07020; phage(gi311992758)     3.92e-10            MNSWIHLSMAIVAEIIATSALKSSEGFTRLLPSLVTVAGYAIAFYFLALTLRVIPVGVAYAIWSGVGIVLISLVGALLFKQHLDLPAIIGIALILAGVVVMNVFSKSVGH
complement(1472042..1473001)       PHAGE_Bacill_G_NC_023719: gp344; RD07_07030; phage(gi593777800)                      1.45e-69            MSTPKHAKVLILGSGPAGYTAAVYAARANLSPALITGLAQGGQLMTTTEVDNWPADVQGVQGPDLMQRFLQHAERFNTEILFDHIAKVDLSRRPFTLTGDTGNLYTCDALIIATGASAKYLGLASEQAFMGRGVSGCATCDGFFYRNKDVVVIGGGNTAVEEALYLSNICRKVTLIHRRDKFRAEPILVDKLMDKVANGNMELKLFHTLDEVLGDDSGVTGVRIRSTETDATEDLDVDGCFVAIGHQPNTGIFEGQLEMKDGYIITKSGLSGMATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRWLENAGQ
1473034..1475403                   PHAGE_Mycoba_Minerva_NC_026584: FtsK; RD07_07035; phage(gi764159392)                 3.29e-97            MSRMPRISNATPRASRNTRNGPSPFQARISALLREARWILFAALAAWLTLVLATWSPADPGWSHSVSGDAIHNGGGTLGAYLADILLYLFGFSAWWWVVLLLHRVRAGYRRLASNLRVTSGKQPDALPRVHWEEGIGFVLLLTGSLGIEALRLYSWGMHLPGGTDGESGAGGVIGQMLAGWLSRGVGFTGGTLALLVLLAVGLSLFFSFSWLQIAERVGSWLEGLVRRVRDSYAAREDRKVGEVAKAVRTEQVVAKQEKLVHEQPVRIEPAITVVPRSDRAEKEKQQSLFAPPAGESDLPAIGLLDPPLQNQETVSAETIEFTSRLIEKKLADFGVSVVVVAAQAGPVITRYEIEPATGVKGSQIVNLAKDLARALSLVSIRVVETIPGKNLMGLELPNPRRQMVKLSEILGSQTYHASHSVLTMALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINAMILSLLYKADASHTRLILIDPKMLEMSVYEGIPHLLAPVVTDMRHAANALNWCVGEMEKRYRLMSKMGVRNLAGYNSKIRDAIKREEPIPNPFSLTPDAPEPLQALPHIVVVIDELADLMMVVGKKIEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQMGAETLLGQGDMLYMPPGTGLPVRVHGAFVHDDEVHRVVEALKAQGEPNYIDGLLEGSEGETGDGLSSVTGMGDAESDPMYDQACEVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQAGMVSPMQSNGNREILVPAREEA
1475403..1476035                   hypothetical protein; RD07_07040                                                     N/A                 MHMIRRAAGALAVFAVAALAAAPAWAATAQEQLDTFVATVKGATGSFKQSTVSPQGATQPAQSGTFAFQRPGKFKWAVQLPYEQLIVSDGKQVFQYDPDLAQVTVRQVDQAIGTSPAAILFGAGQLSQAFAVSALPDRDGLQWLRAKPRNADAGFSQVDIGLRDNQPARIELVDAFGQTTRVELSNLLPGAVPASEFQFTPPQGVDVVKM
1476137..1477477                   PHAGE_Bacill_G_NC_023719: gp70; RD07_07045; phage(gi593777538)                       1.07e-96            MSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAYAADEQYFPDGLNPTFYRPTDRGLEAKIQQKLAFLDELDAQERARKR
1477524..1478879                   PHAGE_Bacill_G_NC_023719: gp287; RD07_07050; phage(gi593777743)                      2.79e-09            MLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQALPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGASSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPEHSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQNKPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP
1479170..1479406                   hypothetical protein; RD07_07055                                                     N/A                 MIGDFRVRCTVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVSYQDREDAERTSQQIFERINGVRFNGEPEFAHASA
complement(1479594..1479911)       virulence factor; RD07_07060                                                         N/A                 MKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVAPAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPRYYKGHRHYDRGHRGHRGHGRGHWRD
complement(1480184..1480699)       PHAGE_Myxoco_Mx8_NC_003085: hypothetical protein; RD07_07065; phage(gi15320584)      4.76e-11            MTPGPRTSPLVFASASIQAIKAGKQRQTRRIVKPQPPPAATLWYCDPAHAERWIAATARPDDATPAQTVSKWLVCPYGKPGDLIDLAHESGQPFGRAILMGVRIQRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWCERYGARAWAANPWVWVLEFRLLNQNGH
1480793..1480954                   hypothetical protein; RD07_07070                                                     N/A                 MENDPLAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIEPPVISQEG
complement(1480970..1481725)       PHAGE_Bacill_G_NC_023719: gp350; RD07_07075; phage(gi593777806)                      3.55e-23            MARLDNADATSMTGRPPLIMNDQRKSSRASCRASANYLRAEAALPRRRYPQPPVSGAATLQELQAQVDTLELENARLRRLALTDDLTGAYNRRYFATMLRDALRERVRGGGLALCLFDIDNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAVLSAPSASAALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRAKQAGKNRLHLIASRTAGA
1482271..1482282                   attR                                                                                 N/A                 CGCCGCTTCAGC
1496627..1496692                   attR                                                                                 N/A                 TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCA

#### region 3 ####
2059371..2059382                   attL                                                                                 N/A                 CGCGCGGCGGGC
2068065..2068076                   attL                                                                                 N/A                 GCCAGGCGCGCC
complement(2069413..2070315)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_09815; phage(gi52430457)     1.33e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
2070465..2070476                   attR                                                                                 N/A                 GCCAGGCGCGCC
2070530..2071504                   hypothetical protein; RD07_09820                                                     N/A                 MRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPGYVRNDGIPADALATLDWAIVLMNWAALLMTVPVVLYCAWPIWRGAAGGLRRGRAGMDAPVALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGASALATPLVRRLHQAGGELGAAADRLATRFVFVQVALALAAGEAWTQIDAAHAVPVMVALLVMSCPCAMSMAVPSAMACAHSALLARPEATTAQGDALLAAAARVARQNLYGSLAWHLLMTPLALAGWVAPWLAAITMLLSSLAVAGNAWRLRRHRWDAAPAAAVAQPAP
2071501..2071644                   hypothetical protein; RD07_09825                                                     N/A                 MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDNDN
2073266..2073928                   peptidase S41; RD07_09835                                                            N/A                 MAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHSTTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQVRTLQAEVQRYGPYSVAGESVFDHPFLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNVAQRMQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG
2073931..2074107                   cytochrome oxidase; RD07_09840                                                       N/A                 MMGYLSALITVLSMGTFLGIVWWAWSSHRQSANRESALLPFALPDEDGPAQQDGAMQP
2074104..2075042                   cytochrome oxidase subunit III; RD07_09845                                           N/A                 MSDFVNGFWSYFIGIIAIGGIVWCVWLLYSQRRWLSTRPAGGVVEDTGHVWDGDLTELNNPVPRWWTWMYLLTCVFALGYLVLFPGVGSYQGTLGYTSVGEVKQKQAELAERVKPVYERFGGMTPEQLVADAPAREIGQRLFLNTCAQCHGSDAKGSTSFPNLTDGDWLYGGTPEIIAETIAKGRHGVMPPWKGVIDPRMAGDIAHYVRSLSGLAVDPVRVFRGKREFANYCVACHGVDGKGNQALGAPNLTDDVWLYGSSEASIVRTILDGRDNRMPAHEEVLTPEQIKLLSAWVWGLSNQAPAKAAEAAR
2075134..2076624                   cytochrome C oxidase; RD07_09850                                                     N/A                 MTQGTPAAPGGPSDPQPPAWRPAPGPRRADGETLEQTLADVRSKIYPRSVSGIFARWRVVFVVLTQLIFYGLPWLQWNGRQAVLFDLGARKFYLFGLVLWPQDVVYLAVLLVISALALFLFTAVAGRLFCGYACPQTVYTEIFMWIERRVEGDRIARIRLDEAPWSARKLRIKATKHVLWLAVAWWTGSTFIGYFAPIRELGHQLFALQLGGWQWFWMLFYGFATWGNAGFMRESVCKYMCPYARFQSVMVDHDTFVVTYDKRRGEPRGGRSRKIDHKAAGLGDCVDCSLCVQVCPTGIDIRDGLQYMCIGCGACIDVCGQVMDKMRYAPGLIRYTSERAVDEGLDGRRARSHLLRPRVLIYGGLILALAIAFAVSLGMRNPLRVNVIRDRGALGREVAGGLVENVYRLQIINTSDQPLRLQLTAEGIDGLAVLAGRDGSDVVEVEAAANKLVPVVLRAPRGDTAPGAHAIVVQARSQDTGRVLEVREPASFYLPE
2076710..2076862                   hypothetical protein; RD07_09855                                                     N/A                 MAGPLVAIIGCVITIYLAMTRYGDQPIAEGAVKRGLVVERVAAPAADARR
2076876..2077115                   hypothetical protein; RD07_09860                                                     N/A                 MRWRSLMWILWPSFLAAGVGSALIFALIDPLDVAIFGQVPTSRTGFYTVSFFVLWLVTALSSTVTAYLMPPGGQDETPF
2077211..2077954                   permease; RD07_09865                                                                 N/A                 MDALHVVVVAGAVVAGFVQGLSGFGYGLTAMSVWAWSIDPRLAAALVVFGSLTGQLIAAFSVRRGFDWRRLLPFLLGGLVGIPIGVRILPMLDVHMFKALLGCFLVLWCPLMLAVKYLPRITAGGRLADAVVGGLGGVMGGIGGFTGTLPTLWCTLRGFARDEQRSIIQNFNLGTLLVTMATYVGTGIVTADMLPLFGLVALAMLIPTVLGTRLYLGISDQAFRRIVLGLLTLSGVAMLASSLPRLL
2077987..2078487                   GCN5 family acetyltransferase; RD07_09870                                            N/A                 MLIRSETPADQRAIFDVTQAAFRGHPHSEQTEAYIVQALRAAGALTLSLVAELDARVVGHAAFSPVQISDGSPSWFGLGPVSVDPAHQGRGIGTALIEHGLARLQARGAAGCVLVGEPAYYGRFGFRPEPGLVLPDMPPTHFLALTFGAPARGTVTYHPGFAARDA
2078586..2079509                   PHAGE_Bacill_G_NC_023719: gp245; RD07_09875; phage(gi593777701)                      2.67e-20            MQAVISVQGLSKTYASGHPALKNINLDIYRGEIFALLGPNGAGKTTLISIICGIVNPGSGRVLADGHDIVREFRAARDAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRAMIAKALSHEPRILFLDEPTAGVDVELRHGMWQMVRRLRENGVTIILTTHYIEEAQEMADRIGVIRKGEIILVEDKHALMSKLGKKQLVIMLDAPLAALPALAGDYQLELAAEGTQLVYTYDNQVSGGIAALLRELDARGIGFHDLQSSESSLEDIFVSLVSAQT
2079506..2080267                   sugar ABC transporter permease; RD07_09880                                           N/A                 MNWYAIKAIYKFEMARAWRTLMQSVASPVISTSLYFVVFGAAIGSHMVEIDGVSYGAFIVPGMIMLSLLTQSVANASFGIYMPRFSGTIYEIHSAPISYVEIVLGYVGAAASKSILLGLIMLATARLFVPFHIDHPVWMLAFLVLTAVTFSLFGFIIGIWADGFEKLQIIPLMIITPLTFLGGTFYSIKMLPPFWQTVTLFNPVVYLVSGFRWAFYGSADVSLGVSLGMTLAFLLVCLLTVRWIFRTGYRLKT
complement(2080283..2081365)       hypothetical protein; RD07_09885                                                     N/A                 MQTESNPLAERFIARNLLDLAIRITLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHLATAGRWLLAGMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGVRIAGPEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFLLMVPMVVYVFLNNTPTVAIVFAVWCLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQQSPAG
2081616..2082518                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_09890; phage(gi52430457)     3.38e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
2082665..2083567                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_09895; phage(gi52430457)     3.38e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(2083527..2083940)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; RD07_09900; phage(gi157166006)     1.67e-29            MNMEIRPVRTEADYKSALKEISRLMESDPELGTPDGDRLDVLATLVQAYEARHYPIDLPDPVEAIKFRMEQGGLTPKGLEPMIGKRNRVYEVLNRKRGLTLPMIWRLHTELGIPAESLIRSPAPPRCELSIGCIRPG
2084225..2084524                   PHAGE_Burkho_Bcep176_NC_007497: gp17; RD07_09905; phage(gi77864642)                  8.98e-10            MNRIGGVGIAWYRKEDYERVRAISNDAHTFPDTFEDWEKRAEERREEILKLGHVVIKAYIDPDTFPAWCRANRYKVDAKGRMAFASAEAHRVTSHVHKD
complement(2084846..2084924)       tRNA                                                                                 N/A                 GGGCCTCTAGCTCATGCCTGGTTAGAGCAGCGGACTCATAATCCGTTGGTGCCGAGTTCGACTCTCGGGGGGCCTACCA
complement(2084934..2087216)       PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; RD07_09915; phage(gi331028036)     8.10e-39            MTKSTGKSPSAIDAATAQSTTAKRAASMAAEKAPAKTAVKVAKPAAKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAEDKLADLVGAARPAPSGRRPGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVSPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADEDEGDDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQTELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETNLQWVLDEVAAAHAYSETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
complement(2087902..2089932)       PHAGE_Helico_phiHP33_NC_016568: DNA primase; RD07_09920; phage(gi371671350)          5.15e-52            MIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENHSPRQQAESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGKGEPKYLNSPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLALQGIANAVATLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIPECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADEAPPDWAFEPVHDFEPDAYSVGAVDGEPSMPAAGGWQERKGRQGGDWKGKKGDWKGKKGDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGDQQLEVIDHGPHLGLVRDLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRMEFDAARAEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAQ
complement(2089952..2090164)       PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; RD07_09925; phage(gi460042545)     3.46e-05            MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY
2097150..2097161                   attR                                                                                 N/A                 CGCGCGGCGGGC

#### region 4 ####
3335312..3335323                   attL                                                                                 N/A                 GAATCTTCACAG
3346314..3346886                   PHAGE_Bacill_AR9_NC_031039: hypothetical protein; RD07_15775; phage(gi100073)        1.56e-06            MLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVPDHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHHETRYLRQRVHGPRSTDSPSSETDGHAHIAG
3346867..3347553                   transcriptional regulator; RD07_15780                                                N/A                 MRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLTRSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTVSESSES
3347554..3347565                   attL                                                                                 N/A                 GCGTTCGCGCGC
3347613..3347981                   hypothetical protein; RD07_15785                                                     N/A                 MLPGVVVLLVIDSWNDYRTLAAITNEAYDSALLEPARVLESSLEFAADGTLQVATPLYAQVMLESKGGTAKRRIYAICSALSVNLADSEYGPPGPAEVICAAASPRSQRLKTTSRSSGRMRG
3347909..3348580                   PHAGE_Pseudo_F116_NC_006552: hypothetical protein; RD07_15790; phage(gi56692976)     4.72e-38            MCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIERHGWPWKLMIGVGRILVPADGWYEWRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
3348909..3349130                   hypothetical protein; RD07_15795                                                     N/A                 MSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
3349130..3349411                   hypothetical protein; RD07_15800                                                     N/A                 MPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAQPRKG
complement(3349408..3349923)       PHAGE_Salmon_II_E1_NC_010495: tail protein; RD07_15805; phage(gi170676285)           7.09e-09            MGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQELAAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAIDLLAYMLSRVSGRAEALAGVADRARIAGLTCERAYEAVRGNVRP
complement(3349923..3350474)       PHAGE_Escher_Rtp_NC_007603: putative endolysin; RD07_15810; phage(gi81343992)        4.83e-13            MRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAEVERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRGRKRFVQGLRNRRLEERALCLSGL
complement(3350453..3350695)       hypothetical protein; RD07_15815                                                     N/A                 MEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE
complement(3350700..3351512)       hypothetical protein; RD07_15820                                                     N/A                 MIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGSGRRAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLGLDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGLIKVRAGAALDKHGYALPHRMIVNDGATVLE
complement(3351512..3351775)       PHAGE_Rhodob_RcapNL_NC_020489: tail fiber protein; RD07_15825; phage(gi461474986)     1.85e-13            MMKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV
complement(3351994..3352410)       hypothetical protein; RD07_15830                                                     N/A                 MSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGVPATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
complement(3352415..3356371)       PHAGE_Pseudo_PS_1_NC_029066: tail protein; RD07_15835; phage(gi985757719)            9.57e-51            MPDITIRRDPFRPHLRQETVVARQGTRLDTILRREGFIVGRAARLARTSPFIVQRNGRWLLQAAWHVRLKKNDVVVVVVLPAGGGGSNPLQVVAMVVLAAATAGVGAWATSAYAGAAGVGATSAAALTVGAGAATAVGPVGGMVVNSLFPPARLPGTLQREKASPTYTLSAQGNMARPMEAIPVRYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDVLLPKELFYAAHDGTLESAGTGVNVYARQIDDSGRPIGTTILLGKENIVAATLTPQYRTFRYKVEPARWEVSVERNSGHLAERATRMIRDVTWLGLRSYLPSKRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSKDLKPTRNPAWAIADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQVARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVARSFSVDYVFPAHDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRVQAWREGMALLARNRDQRRFASFQTELEGAIPGYADLVEISHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPAGPFRVEPGTHEREMRIVDLVDGQGLYVSTGEAEEPTHYTFGPGERRALLAQVMRAVPSEAGLWTLDVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTVFSGPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTWQGNVSASAAPPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDVAGQLGPWYPDGQGVLGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAIAANGAGATAVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSSPFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLWRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITWISDTLPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR
complement(3356364..3356753)       PHAGE_Nitrin_1M3_16_NC_024217: putative tail structure protein; RD07_15840; phage(gi643655230)     3.27e-06            MTSDDVNRYIGLAWQFGARGPGAYDCWGLLRECREHYFGGGIPDTVFGEQARALYAEKMRTGGWEIVMQPEHGDGVLLRAGNDPHVGIYLDLDGGGVLHAMEGRGVIFSPMRALVTMGFSQPTFYRIHA
complement(3356750..3357283)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD07_15845; phage(gi985757717)     6.61e-07            MSLEKALKEAYASAPQDRVVFDTLELRHPAFVDEHGERTAVRVVLGYEDIYARLEAEAPLDGGKEVLFQAGAFRLRLPGFEEGQVPSLLITIDGASEKIVDHVEAAVQSRYPIYATYRPYVSTDLSRPQMNPPITMELNKVTVTGASVSGTATLADVHNWAFPHQRYMRERFPGLFR
complement(3357351..3357710)       PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; RD07_15850; phage(gi374531665)     1.10e-06            MTLPHWPAGLPLVEFSRQPISPFQRTEMENGRARHRRHTRVHPVHAHVSFVLDREQYDVYQRFCSIDLNGYAGWFLMAMNGPGGLKLRKVRWLLPVPREERIPGDLWRVSGELESMSDE
complement(3357720..3360332)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; RD07_15855; phage(gi169257310)     1.31e-64            MADEVASLVLRVDSTQAKGASADLDKLATSGAKAEQAAVKVGTAGKAAAAGLGAMGQAAKTAQAQAAAAAMTAGEMRLAMRSLPMQMTDIAVGLSTGQSPFYVLMQQGGQLKDLFGGIGPAIKAVGGYVAALITPFTAAAAGAAALAVAYQQGAEEGRRFTAAITLTGNAAGVTESQLAAMAKRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLTEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYERVKSLQEEGRQQDAARLALTTYAQAMEERSNQVVKNAGYMERAWNAVKGAAKGAWDAIADVGRPDAAQDVLNGLEREARQRRENIALAEQAGASVSKAERMSLAAAEACVALARDQMQTQSAIAKAQALDAQRSAVGIAARDELNKLIAQGASNEEKRAKALEENEERIRRIRAGGGTVTATEEAASIAAINKQYEKRSAAVAGSVAAGVRELEQAREREAVLRAELETTGKITSDRQKLVAFEQRIADLKAKDQLTADEKSILANETANRQQLERNAGLADQIELQKEVVKLKTLEASAQATLAADQDRYNDLLEGFTASPRVREQLQAQQQIYRDFQRQVRASEKEGLTPDALAARVQVLKLNLDQRLELLARHYENVGVLEGDWKKGAEGAFNDYAETVGNVASATRNAFADAFKGAEDALVQFVTTGKLSFAELADSVIADLMRITVRQSITGPLASVLGSVFSNAFGSALPATASWAMPELAGRRATGGPTLPRRLYEVAENGPELYDEGGRTYLLSGGDGGHVTPLSRNAYRPSMPVTVNVHGVDSQPQVRARPDARGGLSIDLIFRQVKDRLAHDIDAGVGSLPRALERRYGLNRQLA
complement(3360358..3360648)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD07_15860; phage(gi985757709)     4.91e-17            MYRPMLDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFDGVRVMESAALRMMNKK
complement(3360666..3360995)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD07_15865; phage(gi985757708)     8.85e-15            MSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSDASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQARRKN
complement(3361005..3361523)       PHAGE_Pseudo_PS_1_NC_029066: tail protein; RD07_15870; phage(gi985757707)            1.77e-29            MKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNGRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSMMSDFTRYAPLAS
complement(3361778..3362278)       PHAGE_Salmon_64795_sal3_NC_031918: hypothetical protein; RD07_15875; phage(gi100063)     4.06e-35            MNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYVYGAWPTQNIDHVNGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEGCSI
complement(3362286..3362708)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD07_15880; phage(gi985757706)     1.10e-28            MSQDLIRAAFEKRLKDWAKARTPELAVAWQNINFTPPSNAVYLRAYVLPAATISRDAAGDHRQYRSLFQVNVVMPIGAGSRAAEQIQAELDALFQVNLIMPSGGLAVRVRTPISSGQPTTGDADHTVPISLGYDVQFYPE
complement(3362705..3363103)       PHAGE_Salmon_SETP13_NC_022752: putative tail protein; RD07_15885; phage(gi557307690)     1.90e-23            MSFTADLGKFAARAKGNIDTATRQATVLLAKGVILKSPFDTGRFRANWQFSAAGIQRATSMAVDPDGQVTLHRLVADIKQTRAGGVTYLSNSLPYAVPLENGWSKQAPQGMAKLTAQEFQRYVSQAAKDANK
complement(3363100..3363495)       PHAGE_Pseudo_PaMx74_NC_028809: putative virion structural protein; RD07_15890; phage(gi971745311)     1.34e-08            MATFDYADMAATAQELLLEFGGPVSVRQFVTGEYDPDLGQAPTTTVDNAGIGALFDYSAQAAGLANMAGSVIETGDKQMYLAPALAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLYELQLRQA
complement(3363495..3363695)       hypothetical protein; RD07_15895                                                     N/A                 MENFLRLVVPDPSGEPGLQECCGVQLYTADGMPISGLVAMKLESSTDRPIWRATLVMDINVSGKAV
complement(3363697..3364179)       PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: virion protein; RD07_15900; phage(gi658311471)     4.41e-18            MPLIVEDGTGLPNADSYVSVADCQAYAAAHGLAFAGEEAALEAALRNSALYLDGEYTYRGERATDTQALEWPRTVATGVPREVVNACCELAARALTGPLWQDVSSTTAGAAIEKTVGPITTKYASAAGARNDGQTRYAGVAAMLRRWLSSYGSSVKLVRC
complement(3364242..3364493)       hypothetical protein; RD07_15905                                                     N/A                 MTQKTKLPVWYLPGPFYRYEQDVKAEAAKAGVRIVDANATGSRDGAAKEVPKVTLKPEYRSKGKAEAPKEKESDPQPKDPAKT
3365064..3365076                   attL                                                                                 N/A                 CACTAGCTGTGAA
3365168..3366118                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_15915; phage(gi52430457)     3.36e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
complement(3366547..3367149)       hypothetical protein; RD07_15925                                                     N/A                 MPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEKLTKDLAEKDDALTQHLIDSGLSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAPANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
complement(3367272..3367514)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD07_15930; phage(gi985757698)     1.09e-22            MPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVIETRIGVFETARTWSGGTKVLLCVLCFMRGERVVLK
complement(3367520..3368632)       PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; RD07_15935; phage(gi985757697)     1.96e-127           MSSLQTELYDATVRHAIDLVRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKELLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQGQLFDSLGIEFTTRGVTAGQVYAGAMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYADGLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLRYEPDSHKPIGHKVPWGAGPGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFAQAGVE
complement(3368604..3370022)       PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713: portal protein; RD07_15940; phage(gi428782116)     1.75e-64            MPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTARVRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
complement(3370025..3371302)       PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; RD07_15945; phage(gi100002)     0.0                 MPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
complement(3371289..3371774)       PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative terminase small subunit; RD07_15950; phage(gi589286873)     2.92e-44            MPAASLPEGPRTMARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQIPGFLQALNGGKVMADAEVADRLYQRALGYTHVEDDIRVCDGVIITTPTTRHYPPDTTACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA
3372412..3372424                   attR                                                                                 N/A                 CACTAGCTGTGAA
complement(3372414..3373316)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_15955; phage(gi52430457)     1.33e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3373382..3373603                   hypothetical protein; RD07_15960                                                     N/A                 MNWEVGDFQFLKSGSDEPCIQPIESSHLEARAEAMFEPLEAAMLGDADPYSDSSLAGLRNVRTMLSDLLSRSA
3373618..3374316                   hypothetical protein; RD07_15965                                                     N/A                 MSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIGDSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAALLPGYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGRESPAQDVKHE
3374309..3374629                   hypothetical protein; RD07_15970                                                     N/A                 MSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQVHGPNYSVATVQTQAMLQNNLNSIAI
3374695..3374706                   attR                                                                                 N/A                 GCGTTCGCGCGC
3375109..3375720                   PHAGE_Pseudo_F10_NC_007805: Repressor protein; RD07_15975; phage(gi148912804)        9.90e-10            MRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
3375792..3375998                   hypothetical protein; RD07_15980                                                     N/A                 MNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
complement(3376250..3377152)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD07_15985; phage(gi52430457)     1.33e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3377287..3377298                   attR                                                                                 N/A                 GAATCTTCACAG

#### region 5 ####
3746239..3746251                   attL                                                                                 N/A                 AAGATCCGCGATC
complement(3746278..3746484)       integrase; RD07_17790                                                                N/A                 MSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAEQRAAIVETIARGEFDPLVAPRRQ
3746628..3746640                   attL                                                                                 N/A                 GCGCCACCGCGCC
3747489..3748148                   haloacid dehalogenase; RD07_17800                                                    N/A                 MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEYLRLAYGCGRYVPYEQLVREAARATGLPESAPAALEAGWHELPVWDDARALLRALRPHCKLAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAAAFVAGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR
3748176..3749321                   alanine racemase; RD07_17805                                                         N/A                 MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAAGITDILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW
3749462..3749797                   hypothetical protein; RD07_17810                                                     N/A                 MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAPTKDQTQA
complement(3749872..3750732)       PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; RD07_17815; phage(gi414086941)     3.01e-83            MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLVRVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAELYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAPVQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADARRQQFTAEADGIRLRGEAEAASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALPFIGIK
complement(3750996..3751697)       glutathione S-transferase; RD07_17820                                                N/A                 MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMRRRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA
3751867..3752262                   endoribonuclease L-PSP; RD07_17825                                                   N/A                 MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDGTKLADAPFEAQARQVLENVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGAARPARAVVPTGPLHYGFKVEVEAVALA
3752275..3752339                   attL                                                                                 N/A                 TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCC
3752420..3753322                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; RD07_17830; phage(gi971753894)     1.89e-11            MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3753333..3753974                   hypothetical protein; RD07_17835                                                     N/A                 MKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEEVLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVYVVLAAAMGTDTWTVRTKEIPGGVRVSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQWMTCEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG
3754141..3754383                   hypothetical protein; RD07_17840                                                     N/A                 MEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPELLQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA
3754385..3754449                   attR                                                                                 N/A                 TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCC
3754530..3755432                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; RD07_17845; phage(gi971753894)     5.06e-12            MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3755468..3755935                   PHAGE_Burkho_Bcep176_NC_007497: gp36; RD07_17850; phage(gi77864661)                  3.16e-55            MSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSERESYIKFSHAEPVALTAILASNGLDDALWALRCVPGVDRDARLFAVWCARQVEHLMTDQRSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT
3756169..3756546                   hypothetical protein; RD07_17860                                                     N/A                 MLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
3756543..3756725                   hypothetical protein; RD07_17865                                                     N/A                 MSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
3756729..3757715                   PHAGE_Entero_phi80_NC_021190: phage recombinase-annealing protein RecT; RD07_17870; phage(gi824479614)     3.19e-76            MNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDPAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGRDDQGGIQE
3757712..3758359                   PHAGE_Pseudo_YMC11/02/R656_NC_028657: putative exonuclease; RD07_17875; phage(gi966197818)     1.62e-35            MNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFADFVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA
3758417..3758944                   hypothetical protein; RD07_17880                                                     N/A                 MFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEFHPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLIDRVRLKHDLKGAKVLIGFGLGGSSDIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAIEKQGALGLNLEPEAA
3758981..3760165                   PHAGE_Acinet_Ac42_NC_014660: hypothetical protein; RD07_17885; phage(gi311992508)     3.60e-09            MENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVADERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALDAAITALRWSAGALQALNIEADKITLDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVMTERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPLDTSPGHSAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYENRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDADIPASLAQLVAAVKGMTKLYPHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN
3760176..3760517                   PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD07_17890; phage(gi985757664)     5.12e-13            MELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLTDDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGCAAHKYGGIEAATRRAIVRAAAEIGAKMQEAAHA
3760510..3760629                   hypothetical protein; RD07_17895                                                     N/A                 MPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE
3760630..3760830                   hypothetical protein; RD07_17900                                                     N/A                 MEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
complement(3760827..3761816)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: integrase; RD07_17905; phage(gi971753914)      5.63e-59            MGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVRIARFLKEEADLCAKLIHTISTADLGAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRERIYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRAVALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD
3762717..3762729                   attR                                                                                 N/A                 GCGCCACCGCGCC
3767078..3767090                   attR                                                                                 N/A                 AAGATCCGCGATC
