gi|00000000|ref|CP010961.1|  Bordetella pertussis strain H375, complete genome. 4111050, gc%: 67.71%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
435646..435657                     attL                                                                                 N/A                 GAATCTTCACAG
446648..447220                     PHAGE_Bacill_AR9_NC_031039: hypothetical protein; RD04_02100; phage(gi100073)        1.56e-06            MLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVPDHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHHETRYLRQRVHGPRSTDSPSSETDGHAHIAG
447201..447887                     transcriptional regulator; RD04_02105                                                N/A                 MRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLTRSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTVSESSES
447888..447899                     attL                                                                                 N/A                 GCGTTCGCGCGC
447947..448315                     hypothetical protein; RD04_02110                                                     N/A                 MLPGVVVLLVIDSWNDYRTLAAITNEAYDSALLEPARVLESSLEFAADGTLQVATPLYAQVMLESKGGTAKRRIYAICSALSVNLADSEYGPPGPAEVICAAASPRSQRLKTTSRSSGRMRG
448243..448914                     PHAGE_Pseudo_F116_NC_006552: hypothetical protein; RD04_02115; phage(gi56692976)     4.72e-38            MCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIERHGWPWKLMIGVGRILVPADGWYEWRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
449243..449464                     hypothetical protein; RD04_02120                                                     N/A                 MSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
449464..449745                     hypothetical protein; RD04_02125                                                     N/A                 MPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAQPRKG
complement(449742..450257)         PHAGE_Salmon_II_E1_NC_010495: tail protein; RD04_02130; phage(gi170676285)           7.09e-09            MGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQELAAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAIDLLAYMLSRVSGRAEALAGVADRARIAGLTCERAYEAVRGNVRP
complement(450257..450808)         PHAGE_Escher_Rtp_NC_007603: putative endolysin; RD04_02135; phage(gi81343992)        4.83e-13            MRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAEVERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRGRKRFVQGLRNRRLEERALCLSGL
complement(450787..451029)         hypothetical protein; RD04_02140                                                     N/A                 MEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE
complement(451034..451846)         hypothetical protein; RD04_02145                                                     N/A                 MIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGSGRRAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLGLDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGLIKVRAGAALDKHGYALPHRMIVNDGATVLE
complement(451846..452109)         PHAGE_Rhodob_RcapNL_NC_020489: tail fiber protein; RD04_02150; phage(gi461474986)     1.85e-13            MMKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV
complement(452328..452744)         hypothetical protein; RD04_02155                                                     N/A                 MSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGVPATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
complement(452749..456705)         PHAGE_Pseudo_PS_1_NC_029066: tail protein; RD04_02160; phage(gi985757719)            9.57e-51            MPDITIRRDPFRPHLRQETVVARQGTRLDTILRREGFIVGRAARLARTSPFIVQRNGRWLLQAAWHVRLKKNDVVVVVVLPAGGGGSNPLQVVAMVVLAAATAGVGAWATSAYAGAAGVGATSAAALTVGAGAATAVGPVGGMVVNSLFPPARLPGTLQREKASPTYTLSAQGNMARPMEAIPVRYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDVLLPKELFYAAHDGTLESAGTGVNVYARQIDDSGRPIGTTILLGKENIVAATLTPQYRTFRYKVEPARWEVSVERNSGHLAERATRMIRDVTWLGLRSYLPSKRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSKDLKPTRNPAWAIADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQVARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVARSFSVDYVFPAHDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRVQAWREGMALLARNRDQRRFASFQTELEGAIPGYADLVEISHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPAGPFRVEPGTHEREMRIVDLVDGQGLYVSTGEAEEPTHYTFGPGERRALLAQVMRAVPSEAGLWTLDVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTVFSGPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTWQGNVSASAAPPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDVAGQLGPWYPDGQGVLGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAIAANGAGATAVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSSPFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLWRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITWISDTLPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR
complement(456698..457087)         PHAGE_Nitrin_1M3_16_NC_024217: putative tail structure protein; RD04_02165; phage(gi643655230)     3.27e-06            MTSDDVNRYIGLAWQFGARGPGAYDCWGLLRECREHYFGGGIPDTVFGEQARALYAEKMRTGGWEIVMQPEHGDGVLLRAGNDPHVGIYLDLDGGGVLHAMEGRGVIFSPMRALVTMGFSQPTFYRIHA
complement(457084..457617)         PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD04_02170; phage(gi985757717)     6.61e-07            MSLEKALKEAYASAPQDRVVFDTLELRHPAFVDEHGERTAVRVVLGYEDIYARLEAEAPLDGGKEVLFQAGAFRLRLPGFEEGQVPSLLITIDGASEKIVDHVEAAVQSRYPIYATYRPYVSTDLSRPQMNPPITMELNKVTVTGASVSGTATLADVHNWAFPHQRYMRERFPGLFR
complement(457685..458044)         PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; RD04_02175; phage(gi374531665)     1.10e-06            MTLPHWPAGLPLVEFSRQPISPFQRTEMENGRARHRRHTRVHPVHAHVSFVLDREQYDVYQRFCSIDLNGYAGWFLMAMNGPGGLKLRKVRWLLPVPREERIPGDLWRVSGELESMSDE
complement(458054..460666)         PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; RD04_02180; phage(gi169257310)     1.31e-64            MADEVASLVLRVDSTQAKGASADLDKLATSGAKAEQAAVKVGTAGKAAAAGLGAMGQAAKTAQAQAAAAAMTAGEMRLAMRSLPMQMTDIAVGLSTGQSPFYVLMQQGGQLKDLFGGIGPAIKAVGGYVAALITPFTAAAAGAAALAVAYQQGAEEGRRFTAAITLTGNAAGVTESQLAAMAKRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLTEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYERVKSLQEEGRQQDAARLALTTYAQAMEERSNQVVKNAGYMERAWNAVKGAAKGAWDAIADVGRPDAAQDVLNGLEREARQRRENIALAEQAGASVSKAERMSLAAAEACVALARDQMQTQSAIAKAQALDAQRSAVGIAARDELNKLIAQGASNEEKRAKALEENEERIRRIRAGGGTVTATEEAASIAAINKQYEKRSAAVAGSVAAGVRELEQAREREAVLRAELETTGKITSDRQKLVAFEQRIADLKAKDQLTADEKSILANETANRQQLERNAGLADQIELQKEVVKLKTLEASAQATLAADQDRYNDLLEGFTASPRVREQLQAQQQIYRDFQRQVRASEKEGLTPDALAARVQVLKLNLDQRLELLARHYENVGVLEGDWKKGAEGAFNDYAETVGNVASATRNAFADAFKGAEDALVQFVTTGKLSFAELADSVIADLMRITVRQSITGPLASVLGSVFSNAFGSALPATASWAMPELAGRRATGGPTLPRRLYEVAENGPELYDEGGRTYLLSGGDGGHVTPLSRNAYRPSMPVTVNVHGVDSQPQVRARPDARGGLSIDLIFRQVKDRLAHDIDAGVGSLPRALERRYGLNRQLA
complement(460692..460982)         PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD04_02185; phage(gi985757709)     4.91e-17            MYRPMLDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFDGVRVMESAALRMMNKK
complement(461000..461329)         PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD04_02190; phage(gi985757708)     8.85e-15            MSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSDASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQARRKN
complement(461339..461857)         PHAGE_Pseudo_PS_1_NC_029066: tail protein; RD04_02195; phage(gi985757707)            1.77e-29            MKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNGRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSMMSDFTRYAPLAS
complement(462112..462612)         PHAGE_Salmon_64795_sal3_NC_031918: hypothetical protein; RD04_02200; phage(gi100063)     4.06e-35            MNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYVYGAWPTQNIDHVNGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEGCSI
complement(462620..463042)         PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD04_02205; phage(gi985757706)     1.10e-28            MSQDLIRAAFEKRLKDWAKARTPELAVAWQNINFTPPSNAVYLRAYVLPAATISRDAAGDHRQYRSLFQVNVVMPIGAGSRAAEQIQAELDALFQVNLIMPSGGLAVRVRTPISSGQPTTGDADHTVPISLGYDVQFYPE
complement(463039..463437)         PHAGE_Salmon_SETP13_NC_022752: putative tail protein; RD04_02210; phage(gi557307690)     1.90e-23            MSFTADLGKFAARAKGNIDTATRQATVLLAKGVILKSPFDTGRFRANWQFSAAGIQRATSMAVDPDGQVTLHRLVADIKQTRAGGVTYLSNSLPYAVPLENGWSKQAPQGMAKLTAQEFQRYVSQAAKDANK
complement(463434..463829)         PHAGE_Pseudo_PaMx74_NC_028809: putative virion structural protein; RD04_02215; phage(gi971745311)     1.34e-08            MATFDYADMAATAQELLLEFGGPVSVRQFVTGEYDPDLGQAPTTTVDNAGIGALFDYSAQAAGLANMAGSVIETGDKQMYLAPALAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLYELQLRQA
complement(463829..464029)         hypothetical protein; RD04_02220                                                     N/A                 MENFLRLVVPDPSGEPGLQECCGVQLYTADGMPISGLVAMKLESSTDRPIWRATLVMDINVSGKAV
complement(464031..464513)         PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: virion protein; RD04_02225; phage(gi658311471)     4.41e-18            MPLIVEDGTGLPNADSYVSVADCQAYAAAHGLAFAGEEAALEAALRNSALYLDGEYTYRGERATDTQALEWPRTVATGVPREVVNACCELAARALTGPLWQDVSSTTAGAAIEKTVGPITTKYASAAGARNDGQTRYAGVAAMLRRWLSSYGSSVKLVRC
complement(464576..464827)         hypothetical protein; RD04_02230                                                     N/A                 MTQKTKLPVWYLPGPFYRYEQDVKAEAAKAGVRIVDANATGSRDGAAKEVPKVTLKPEYRSKGKAEAPKEKESDPQPKDPAKT
465398..465410                     attL                                                                                 N/A                 CACTAGCTGTGAA
465502..466452                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_02240; phage(gi52430457)     3.36e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
466551..467360                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_02245; phage(gi52430457)     2.69e-92            MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDVKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTY
complement(467930..468532)         hypothetical protein; RD04_02255                                                     N/A                 MPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEKLTKDLAEKDDALTQHLIDSGLSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAPANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
complement(468655..468897)         PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD04_02260; phage(gi985757698)     1.09e-22            MPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVIETRIGVFETARTWSGGTKVLLCVLCFMRGERVVLK
complement(468903..470015)         PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; RD04_02265; phage(gi985757697)     1.96e-127           MSSLQTELYDATVRHAIDLVRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKELLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQGQLFDSLGIEFTTRGVTAGQVYAGAMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYADGLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLRYEPDSHKPIGHKVPWGAGPGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFAQAGVE
complement(469987..471405)         PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713: portal protein; RD04_02270; phage(gi428782116)     1.75e-64            MPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTARVRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
complement(471408..472685)         PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; RD04_02275; phage(gi100002)     0.0                 MPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
complement(472672..473157)         PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative terminase small subunit; RD04_02280; phage(gi589286873)     5.45e-44            MPAASLPEGPRTMARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQIPGFLQALHGGKVMADAEVADRLYQRALGYTHVEDDIRVCDGVIITTPTTRHYPPDTTACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA
473795..473807                     attR                                                                                 N/A                 CACTAGCTGTGAA
complement(473797..474747)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_02285; phage(gi52430457)     1.10e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
474765..474986                     hypothetical protein; RD04_02290                                                     N/A                 MNWEVGDFQFLKSGSDEPCIQPIESSHLEARAEAMFEPLEAAMLGDADPYSDSSLAGLRNVRTMLSDLLSRSA
475001..475699                     hypothetical protein; RD04_02295                                                     N/A                 MSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIGDSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAALLPGYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGRESPAQDVKHE
475692..476012                     hypothetical protein; RD04_02300                                                     N/A                 MSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQVHGPNYSVATVQTQAMLQNNLNSIAI
476078..476089                     attR                                                                                 N/A                 GCGTTCGCGCGC
476492..477103                     PHAGE_Pseudo_F10_NC_007805: Repressor protein; RD04_02305; phage(gi148912804)        9.90e-10            MRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
477175..477381                     hypothetical protein; RD04_02310                                                     N/A                 MNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
complement(477633..478583)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_02315; phage(gi52430457)     1.10e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
478670..478681                     attR                                                                                 N/A                 GAATCTTCACAG

#### region 2 ####
3237828..3237840                   attL                                                                                 N/A                 CGCCTGGAAGTCC
3238108..3238181                   attL                                                                                 N/A                 CGGCTAGCTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCA
3238213..3239163                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_15400; phage(gi52430457)     3.36e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
complement(3239608..3239919)       cell division protein ZapA; RD04_15405                                               N/A                 MERVDVTILGRDYSLACSAEEKPVLMAAVRHVDQLMLRIQGSGKVSSNERIAVMAALQVAGELLAMKAPDGPLGGLAVGDFKRRIEEMNLMLDDALSGQEKLL
complement(3239919..3240449)       hypothetical protein; RD04_15410                                                     N/A                 MQVLPNIAVFLSLREEARSVPGWFTIAPMLQDLDQLAARIGQLVQRTRHLHAERDALRVRLNDSESEQRKLKQRCADFETELQALQARLREHDGATATQLAEAQQTEVALREQLAREAAERQALESRVSAREAELQGNLRARDTDLQRLRVAASTARERIDAVLARLPGAPAGEQP
3240507..3240580                   attR                                                                                 N/A                 CGGCTAGCTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCA
3240660..3241562                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_15415; phage(gi52430457)     1.33e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3241661..3242611                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_15420; phage(gi52430457)     1.10e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3242901..3243365                   tricarboxylate transporter; RD04_15425                                               N/A                 MQLRNRQDFWSGVMFIVLGLGFSWQASSYQMGTAARMGPGYFPFWLGLVLALLGAIVLISALSKKATETAVEGFDWRIVFLVVGSVVLYALILKPLGVYLSVFILVVVSSLASHEFSWKVAVANGIFLVVFSYLAFIKGLGLIFPLWPSFLGMN
3243380..3244885                   hypothetical protein; RD04_15430                                                     N/A                 MELFDNLMLGFSVAFTPENLAYALLGCILGTLIGVLPGIGPVPTIAMLLPITYVLPPVAGLIMLAGIYYGAQYGGSTTTILVALPGETSAVVTVLDGHQMARNGRAGAALAIAALGSFFAGCVATLLLAAFAPPLAEVSFKFGPAEYFSLMVLGLVGAVVLASGSLPKAIAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEIMTNLEQKENRVDITDKIGSLYPNFQEFKEAAPAVVRGTALGSALGILPGGGAVLSSFASYTLEKKISKNPERFGKGHPAGLAGPESANNAAAQTSFIPLLTLGIPGNAVMALMVGAMTIHNIQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLIGLWVKLLKVPYRILFPAILVFCTIGVYSLNYNTFDIFMTAAFGVVGYVWAKLKCEGAPLLLGLVLGPMMEENFRRALLLSRGDFSTFVTRPLSATLLAVALFLVVLVALPAIRKKREETFVEEE
3245142..3246746                   gamma-glutamyltransferase; RD04_15435                                                N/A                 MKFDWNNPYPSTRIPVFARNVVATSHPLAAQAGLRILALGGNAADAAVASAATLALVEPASNGLGSDCFALVWDGARLHGLNASGTAPAAWSPGYFQRKHQGAIPLRGWDSVTIPGCVAGWASLHDKLGSLPFADVLAPAIEYAERGFAVPPTVQRRWADQVDPLRSLPGFAEHFLPHGRAPEVGEHFVLAGAAATLRRIAASGGRDFYEGETAQKLVAHAQAHEAALTLGDLRDYAPQWVEPISQAYRGHALHQLPPNGQGLAALIALGIVEHFDLASRPAEHPDTQHILIEAMKLAFADVHAHVADAAHIRIRVEQLLDPAYLAERARLIDLRRARVYNAAQAPQGGTVYLACADRNGMMVSFTQSNYMGFGSGIVVPGTGISLQNRGCCFSMDPDHPNVVGGGKRPFHTGIPAFLTQDGAPLMSFGIMGGNMQPQGHLQALVRMLDYRQQPQAACDAPRWKWNRGLSVDIEAAMPAQVTDALRARGHIVEVAAPADKDFGSGQFIWRLGDPAVDGYVAASDSRRDGLAAGF
3246802..3247707                   PHAGE_Synech_S_SM2_NC_015279: 6-phosphogluconate dehydrogenase; RD04_15440; phage(gi326781984)     2.19e-07            MATIGSKTYDTTTPRNVAFLGLGVMGLPMAGHLARAGHQVTVYNRTAAKAQAWAAEFGGKAAATPREAAAGAQIVFCCVGNDDDLRSVVLGADGAFAGMQAGAVFVDHTTASADVARELYAAARELNLQFIDAPVSGGQAGAVNGALTIMCGGDSATFEDIKPVAHAFGRAVTLVGPPGAGQLAKMVNQVCIAGVVQGLSEAIAFGQTAGLDMKLVLDVISKGAAQSWQMENRGATMVDDQFDFGFAVDWMRKDLGLVLAEARNNGARLPLTALVDQFYGDVQKMGGNRWDTSSLIKRLRD
complement(3248148..3249050)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_15450; phage(gi52430457)     3.38e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3249237..3249989                   PHAGE_Flavob_Fpv3_NC_031904: recombination endonuclease subunit; RD04_15455; phage(gi100056)     1.05e-31            MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQRLAEGAVVYPAAPFRALDQLAPADVRVVILGQDPYHGPGQAQGLAFSVPDDCKCPPSLRNIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALIAEVARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTNAWLQQRGQKPVDWSGEQNNASRQGEFAL
3250264..3251952                   PHAGE_Strept_YMC_2011_NC_018285: Helicase; RD04_15460; phage(gi399498700)            1.70e-06            MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPGNKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPRPSTGGPRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRPQRDFGDRPQRDASDRPQRSFGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRSFGDRPQRDVGDRPQRDFGDRPQRSFGDHPQREGGWHGAPREGRSFDKRPGGPAKRFAKPAAPRRG
3252041..3253231                   hypothetical protein; RD04_15465                                                     N/A                 MQRPASSSLPPLDPAASAHSASVARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYTAGATKLASPADAQGPALPAGDFVTAPELTPLFAATVARQVAQVLRATDTASVLEFGAGTGALAEGVLRALAGMDCPARYLIVEVSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGTVQERGVTVDADGAFAWQDRDADAPLAQAVAQRMPPLPGYVSEINLQAEAWVRGMGLWLQRGAALLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFVAPGLQDITSHVDFTAMADAALAGGLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAVGRDMPEPLLGFARGDRRGTL
complement(3253246..3254340)       PHAGE_Sinorh_phiN3_NC_028945: tRNA nucleotidyltransferase; RD04_15470; phage(gi971759164)     2.24e-61            MSRTDDPGVAGLRVYIVGGAVRDDLLGLPAGDRDWVVVGATPEDMARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDDTAVRAEIDRAAAAGLPLAGRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALAASATPAAQLDLIERCDALRKPERFDALLQAAAIVAPVDLSAWRARVQAVRAIDAGAIARQCAGDPARIKPALRQARLQALGGA
complement(3254337..3256400)       PHAGE_Pseudo_AF_NC_019923: putative structural lysozyme; RD04_15475; phage(gi431810307)     3.32e-16            MRGWLPVLALFTAACAPVDAQQRAAASTAPAAVSMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRKQWSVLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGDWIQAAARAGDFETVRRLGPVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWALYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYIFEPKDQKSYDQMMKNPMKWLVRQDKSPVGRNEKELVTLALARLNKPDVSVADSYLRREWSRHLPRQNLAWVRSQYALVAVLNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPVWVYWKARGQAALGRAQQASQAYASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIAEARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAAELARAEGIYDRVVNTSERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLMQLMPATAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAGPGRPRNWRASFGHPVEGAIFAETIPFNETRLYVKNVMSNAVYYAAMFSGQPQSLKERLGSIVPPQAALATNQR
3256427..3256438                   attL                                                                                 N/A                 ATTTCTGATACC
3256476..3257156                   5-formyltetrahydrofolate cyclo-ligase; RD04_15480                                    N/A                 MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWLNLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQWVESGIAVCLPAVQERDAPLVFRDWTPDSAMRTGAYGVQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAWQAAGASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSRFLLR
3257467..3258807                   PHAGE_Burkho_phi1026b_NC_005284: gp59; RD04_15485; phage(gi38707949)                 5.08e-45            MQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYATAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLARPLGGAVFGHIGDRIGRKKSLVITLLLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDRSKRTFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSVNESPDFLAEQAEKARLKDAAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTNTFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYIATRIGSRRFLLITSFLSIFTPYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSGAIFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA
3258809..3259828                   PHAGE_Rhodoc_E3_NC_021347: putative histone deacetylase protein; RD04_15490; phage(gi509142389)     2.36e-06            MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKFDVREPVDAGAGAIGAVHSLDYLRFLREAHARWKQLPDDWGDEVVSNVFVREPNALRGVLAQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARRDAAGGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFYPVVAGFENERGAGEGYGYNVNLPMPHGSPEPVFFDRLQQAQRAIELFQPDALVLSLGFDVFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGYYIEGLEDNAERFFAGLAKA
3259892..3260863                   LysR family transcriptional regulator; RD04_15495                                    N/A                 MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHLSQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGEEIYRLAREMYGMVARVEEAAIQDEDDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFSVDVMQSAAILDALAKRVPALGLCLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLSPLTIFRDQQGFTGRIVGTSPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEHNVAEIDVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEMRAR
complement(3260928..3261830)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; RD04_15500; phage(gi52430457)     7.47e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(3261977..3262819)       5,10-methylenetetrahydrofolate reductase; RD04_15505                                 N/A                 MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFGAGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRDQLRDILAAYREQGVRRLVALRGDLPSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNKVQAGADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRWIRLRLAEYGDDKASIRAFGLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA
complement(3262819..3263154)       hypothetical protein; RD04_15510                                                     N/A                 MALILVWILNAVALLAVAYLLHGITVASFGSALVAALVLGLLNMLVKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSVLRGFQVNGFWWAVAGAILYSIIAGLLTKLIP
complement(3263225..3264643)       S-adenosyl-L-homocysteine hydrolase; RD04_15515                                      N/A                 MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAKPGSEEERVLFAAIKETLGRDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALVALRAQVWVTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNYHVITRQHMEAMKDQAIVCNIGHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGVKLSTLSKQQADYIGVPVEGPFKPDHYRY
complement(3264923..3265963)       alpha-mannosyltransferase; RD04_15520                                                N/A                 MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRTVPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIATEGPLGLAARRMALRRGWRFTTSFHTMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSRGVDARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRKFPAAHFAGPQADDRLAAYYNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAVVQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDAVARDLLAAFTPLVEAPLALPPAAQRI
complement(3266043..3266294)       hypothetical protein; RD04_15525                                                     N/A                 MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICRGCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRRNNY
complement(3266405..3267568)       S-adenosylmethionine synthetase; RD04_15530                                          N/A                 MANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRPIYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA
3267852..3268706                   lipid A biosynthesis lauroyl acyltransferase; RD04_15535                             N/A                 MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQAGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLGKVVSDDYAIVEAARAEGRGILFLTPHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLETARNTSAVNAVPATMQGVRTLRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGGRGWRIHYARVPEPLPDGPQEQAALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDSARQEPER
3268703..3269593                   acyltransferase; RD04_15540                                                          N/A                 MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRIVRRNLELCFPGQPEAVRERWTREHFRALGQSIVDRGVLWYGSPEAVREMVTQTGAERINALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARFNEVFLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSIFVPFFGVPAATLLATAQLARKWNAAVLPILDFWDPRTGRYHVEVLPELPDFPGDGSLEDATTRLNRELESWVLRCPSQYYWVHRRFKTRPLGKPKLY
3269636..3270547                   diaminopimelate epimerase; RD04_15545                                                N/A                 MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGPAISVFSGQVDIDRLVFTSGLHR
3270574..3271266                   hypothetical protein; RD04_15550                                                     N/A                 MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSRAISLGERQIQTLRERTRELEWRLSELIRNANSNETIGDHLSQWCCRMLAEADAQHVPGEIALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFEAVSWLDAKPKSLALVALRPDADAPTFGLLVLGSDDAERFAPDMGTAFLEAIGKLASAALRRLGTPPLAAA
3271281..3272261                   PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; RD04_15555; phage(gi100018)     3.32e-16            MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTSR
3278866..3278877                   attR                                                                                 N/A                 ATTTCTGATACC
3284039..3284051                   attR                                                                                 N/A                 CGCCTGGAAGTCC

#### region 3 ####
3750903..3750915                   attL                                                                                 N/A                 AAGATCCGCGATC
complement(3750942..3751148)       integrase; RD04_17780                                                                N/A                 MSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAEQRAAIVETIARGEFDPLVAPRRQ
3751292..3751304                   attL                                                                                 N/A                 GCGCCACCGCGCC
3752153..3752812                   haloacid dehalogenase; RD04_17790                                                    N/A                 MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEYLRLAYGCGRYVPYEQLVREAARATGLPESAPAALEAGWHELPVWDDARALLRALRPHCKLAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAAAFVAGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR
3752840..3753985                   alanine racemase; RD04_17795                                                         N/A                 MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAAGITDILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW
3754126..3754461                   hypothetical protein; RD04_17800                                                     N/A                 MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAPTKDQTQA
complement(3754536..3755396)       PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; RD04_17805; phage(gi414086941)     3.01e-83            MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLVRVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAELYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAPVQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADARRQQFTAEADGIRLRGEAEAASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALPFIGIK
complement(3755660..3756361)       glutathione S-transferase; RD04_17810                                                N/A                 MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMRRRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA
3756531..3756926                   endoribonuclease L-PSP; RD04_17815                                                   N/A                 MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDGTKLADAPFEAQARQVLDNVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGAARPARAVVPTGPLHYGFKVEVEAVALA
3757084..3757986                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; RD04_17820; phage(gi971753894)     1.89e-11            MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3757997..3758638                   hypothetical protein; RD04_17825                                                     N/A                 MKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEEVLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVYVVLAAAMGTDTWTVRTKEIPGGVRVSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQWMTCEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG
3758805..3759047                   hypothetical protein; RD04_17830                                                     N/A                 MEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPELLQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA
3759194..3760096                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; RD04_17835; phage(gi971753894)     5.06e-12            MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3760132..3760599                   PHAGE_Burkho_Bcep176_NC_007497: gp36; RD04_17840; phage(gi77864661)                  3.16e-55            MSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSERESYIKFSHAEPVALTAILASNGLDDALWALRCVPGVDRDARLFAVWCARQVEHLMTDQRSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT
3760833..3761210                   hypothetical protein; RD04_17850                                                     N/A                 MLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
3761207..3761389                   hypothetical protein; RD04_17855                                                     N/A                 MSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
3761393..3762379                   PHAGE_Entero_phi80_NC_021190: phage recombinase-annealing protein RecT; RD04_17860; phage(gi824479614)     3.19e-76            MNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDPAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGRDDQGGIQE
3762376..3763023                   PHAGE_Pseudo_YMC11/02/R656_NC_028657: putative exonuclease; RD04_17865; phage(gi966197818)     1.62e-35            MNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFADFVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA
3763081..3763608                   hypothetical protein; RD04_17870                                                     N/A                 MFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEFHPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLIDRVRLKHDLKGAKVLIGFGLGGSSDIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAIEKQGALGLNLEPEAA
3763645..3764829                   PHAGE_Acinet_Ac42_NC_014660: hypothetical protein; RD04_17875; phage(gi311992508)     3.60e-09            MENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVADERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALDAAITALRWSAGALQALNIEADKITLDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVMTERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPLDTSPGHSAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYENRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDADIPASLAQLVAAVKGMTKLYPHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN
3764840..3765181                   PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; RD04_17880; phage(gi985757664)     5.12e-13            MELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLTDDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGCAAHKYGGIEAATRRAIVRAAAEIGAKMQEAAHA
3765174..3765293                   hypothetical protein; RD04_17885                                                     N/A                 MPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE
3765294..3765494                   hypothetical protein; RD04_17890                                                     N/A                 MEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
complement(3765491..3766480)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: integrase; RD04_17895; phage(gi971753914)      5.63e-59            MGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVRIARFLKEEADLCAKLIHTISTADLGAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRERIYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRAVALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD
3767381..3767393                   attR                                                                                 N/A                 GCGCCACCGCGCC
3772791..3772803                   attR                                                                                 N/A                 AAGATCCGCGATC
