gi|00000000|ref|CP011175.1|  Bordetella pertussis strain E976, complete genome. 4116415, gc%: 67.70%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
680300..680369                     attL                                                                                 N/A                 CTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCAACC
680398..681348                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; WU09_03385; phage(gi52430457)     1.10e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
complement(681600..681806)         hypothetical protein; WU09_03390                                                     N/A                 MNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
complement(681878..682489)         PHAGE_Pseudo_F10_NC_007805: Repressor protein; WU09_03395; phage(gi148912804)        9.90e-10            MRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
682892..682903                     attL                                                                                 N/A                 GCGCGCGAACGC
complement(682969..683289)         hypothetical protein; WU09_03400                                                     N/A                 MSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQVHGPNYSVATVQTQAMLQNNLNSIAI
complement(683282..683980)         membrane protein; WU09_03405                                                         N/A                 MSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIGDSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAALLPGYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGRESPAQDVKHE
complement(683995..684216)         hypothetical protein; WU09_03410                                                     N/A                 MNWEVGDFQFLKSGSDEPCIQPIESSHLEARAEAMFEPLEAAMLGDADPYSDSSLAGLRNVRTMLSDLLSRSA
684234..685184                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; WU09_03415; phage(gi52430457)     1.10e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
685824..686309                     PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative terminase small subunit; WU09_03420; phage(gi589286873)     5.45e-44            MPAASLPEGPRTMARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQIPGFLQALHGGKVMADAEVADRLYQRALGYTHVEDDIRVCDGVIITTPTTRHYPPDTTACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA
686296..687573                     PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; WU09_03425; phage(gi100002)     0.0                 MPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
687576..688994                     PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713: portal protein; WU09_03430; phage(gi428782116)     1.75e-64            MPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTARVRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
688966..690078                     PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; WU09_03435; phage(gi985757697)     1.96e-127           MSSLQTELYDATVRHAIDLVRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKELLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQGQLFDSLGIEFTTRGVTAGQVYAGAMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYADGLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLRYEPDSHKPIGHKVPWGAGPGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFAQAGVE
690084..690326                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; WU09_03440; phage(gi985757698)     1.09e-22            MPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVIETRIGVFETARTWSGGTKVLLCVLCFMRGERVVLK
690449..691051                     hypothetical protein; WU09_03445                                                     N/A                 MPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEKLTKDLAEKDDALTQHLIDSGLSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAPANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
complement(691621..692430)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; WU09_03455; phage(gi52430457)     2.69e-92            MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDVKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTY
692463..692533                     attL                                                                                 N/A                 GGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGT
complement(692529..693479)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; WU09_03460; phage(gi52430457)     3.36e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
693512..693582                     attR                                                                                 N/A                 GGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGT
694154..694405                     hypothetical protein; WU09_03470                                                     N/A                 MTQKTKLPVWYLPGPFYRYEQDVKAEAAKAGVRIVDANATGSRDGAAKEVPKVTLKPEYRSKGKAEAPKEKESDPQPKDPAKT
694468..694950                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: virion protein; WU09_03475; phage(gi658311471)     4.41e-18            MPLIVEDGTGLPNADSYVSVADCQAYAAAHGLAFAGEEAALEAALRNSALYLDGEYTYRGERATDTQALEWPRTVATGVPREVVNACCELAARALTGPLWQDVSSTTAGAAIEKTVGPITTKYASAAGARNDGQTRYAGVAAMLRRWLSSYGSSVKLVRC
694952..695152                     hypothetical protein; WU09_03480                                                     N/A                 MENFLRLVVPDPSGEPGLQECCGVQLYTADGMPISGLVAMKLESSTDRPIWRATLVMDINVSGKAV
695152..695547                     PHAGE_Pseudo_PaMx74_NC_028809: putative virion structural protein; WU09_03485; phage(gi971745311)     1.34e-08            MATFDYADMAATAQELLLEFGGPVSVRQFVTGEYDPDLGQAPTTTVDNAGIGALFDYSAQAAGLANMAGSVIETGDKQMYLAPALAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLYELQLRQA
695544..695942                     PHAGE_Salmon_SETP13_NC_022752: putative tail protein; WU09_03490; phage(gi557307690)     1.90e-23            MSFTADLGKFAARAKGNIDTATRQATVLLAKGVILKSPFDTGRFRANWQFSAAGIQRATSMAVDPDGQVTLHRLVADIKQTRAGGVTYLSNSLPYAVPLENGWSKQAPQGMAKLTAQEFQRYVSQAAKDANK
695939..696361                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; WU09_03495; phage(gi985757706)     1.10e-28            MSQDLIRAAFEKRLKDWAKARTPELAVAWQNINFTPPSNAVYLRAYVLPAATISRDAAGDHRQYRSLFQVNVVMPIGAGSRAAEQIQAELDALFQVNLIMPSGGLAVRVRTPISSGQPTTGDADHTVPISLGYDVQFYPE
696369..696869                     PHAGE_Salmon_64795_sal3_NC_031918: hypothetical protein; WU09_03500; phage(gi100063)     4.06e-35            MNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYVYGAWPTQNIDHVNGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEGCSI
697124..697642                     PHAGE_Pseudo_PS_1_NC_029066: tail protein; WU09_03505; phage(gi985757707)            1.77e-29            MKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNGRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSMMSDFTRYAPLAS
697652..697981                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; WU09_03510; phage(gi985757708)     8.85e-15            MSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSDASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQARRKN
697999..698289                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; WU09_03515; phage(gi985757709)     4.91e-17            MYRPMLDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFDGVRVMESAALRMMNKK
698315..700927                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; WU09_03520; phage(gi169257310)     1.31e-64            MADEVASLVLRVDSTQAKGASADLDKLATSGAKAEQAAVKVGTAGKAAAAGLGAMGQAAKTAQAQAAAAAMTAGEMRLAMRSLPMQMTDIAVGLSTGQSPFYVLMQQGGQLKDLFGGIGPAIKAVGGYVAALITPFTAAAAGAAALAVAYQQGAEEGRRFTAAITLTGNAAGVTESQLAAMAKRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLTEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYERVKSLQEEGRQQDAARLALTTYAQAMEERSNQVVKNAGYMERAWNAVKGAAKGAWDAIADVGRPDAAQDVLNGLEREARQRRENIALAEQAGASVSKAERMSLAAAEACVALARDQMQTQSAIAKAQALDAQRSAVGIAARDELNKLIAQGASNEEKRAKALEENEERIRRIRAGGGTVTATEEAASIAAINKQYEKRSAAVAGSVAAGVRELEQAREREAVLRAELETTGKITSDRQKLVAFEQRIADLKAKDQLTADEKSILANETANRQQLERNAGLADQIELQKEVVKLKTLEASAQATLAADQDRYNDLLEGFTASPRVREQLQAQQQIYRDFQRQVRASEKEGLTPDALAARVQVLKLNLDQRLELLARHYENVGVLEGDWKKGAEGAFNDYAETVGNVASATRNAFADAFKGAEDALVQFVTTGKLSFAELADSVIADLMRITVRQSITGPLASVLGSVFSNAFGSALPATASWAMPELAGRRATGGPTLPRRLYEVAENGPELYDEGGRTYLLSGGDGGHVTPLSRNAYRPSMPVTVNVHGVDSQPQVRARPDARGGLSIDLIFRQVKDRLAHDIDAGVGSLPRALERRYGLNRQLA
700937..701296                     PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; WU09_03525; phage(gi374531665)     1.10e-06            MTLPHWPAGLPLVEFSRQPISPFQRTEMENGRARHRRHTRVHPVHAHVSFVLDREQYDVYQRFCSIDLNGYAGWFLMAMNGPGGLKLRKVRWLLPVPREERIPGDLWRVSGELESMSDE
701364..701897                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; WU09_03530; phage(gi985757717)     6.61e-07            MSLEKALKEAYASAPQDRVVFDTLELRHPAFVDEHGERTAVRVVLGYEDIYARLEAEAPLDGGKEVLFQAGAFRLRLPGFEEGQVPSLLITIDGASEKIVDHVEAAVQSRYPIYATYRPYVSTDLSRPQMNPPITMELNKVTVTGASVSGTATLADVHNWAFPHQRYMRERFPGLFR
701894..702283                     PHAGE_Nitrin_1M3_16_NC_024217: putative tail structure protein; WU09_03535; phage(gi643655230)     3.27e-06            MTSDDVNRYIGLAWQFGARGPGAYDCWGLLRECREHYFGGGIPDTVFGEQARALYAEKMRTGGWEIVMQPEHGDGVLLRAGNDPHVGIYLDLDGGGVLHAMEGRGVIFSPMRALVTMGFSQPTFYRIHA
702276..706232                     PHAGE_Pseudo_PS_1_NC_029066: tail protein; WU09_03540; phage(gi985757719)            9.57e-51            MPDITIRRDPFRPHLRQETVVARQGTRLDTILRREGFIVGRAARLARTSPFIVQRNGRWLLQAAWHVRLKKNDVVVVVVLPAGGGGSNPLQVVAMVVLAAATAGVGAWATSAYAGAAGVGATSAAALTVGAGAATAVGPVGGMVVNSLFPPARLPGTLQREKASPTYTLSAQGNMARPMEAIPVRYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDVLLPKELFYAAHDGTLESAGTGVNVYARQIDDSGRPIGTTILLGKENIVAATLTPQYRTFRYKVEPARWEVSVERNSGHLAERATRMIRDVTWLGLRSYLPSKRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSKDLKPTRNPAWAIADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQVARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVARSFSVDYVFPAHDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRVQAWREGMALLARNRDQRRFASFQTELEGAIPGYADLVEISHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPAGPFRVEPGTHEREMRIVDLVDGQGLYVSTGEAEEPTHYTFGPGERRALLAQVMRAVPSEAGLWTLDVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTVFSGPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTWQGNVSASAAPPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDVAGQLGPWYPDGQGVLGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAIAANGAGATAVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSSPFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLWRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITWISDTLPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR
706237..706653                     hypothetical protein; WU09_03545                                                     N/A                 MSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGVPATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
706872..707135                     PHAGE_Rhodob_RcapNL_NC_020489: tail fiber protein; WU09_03550; phage(gi461474986)     1.85e-13            MMKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV
707135..707947                     hypothetical protein; WU09_03555                                                     N/A                 MIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGSGRRAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLGLDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGLIKVRAGAALDKHGYALPHRMIVNDGATVLE
707952..708194                     hypothetical protein; WU09_03560                                                     N/A                 MEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE
708173..708724                     PHAGE_Escher_Rtp_NC_007603: putative endolysin; WU09_03565; phage(gi81343992)        4.83e-13            MRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAEVERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRGRKRFVQGLRNRRLEERALCLSGL
708724..709239                     PHAGE_Salmon_II_E1_NC_010495: tail protein; WU09_03570; phage(gi170676285)           7.09e-09            MGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQELAAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAIDLLAYMLSRVSGRAEALAGVADRARIAGLTCERAYEAVRGNVRP
complement(709236..709517)         hypothetical protein; WU09_03575                                                     N/A                 MPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAQPRKG
complement(709517..709738)         hypothetical protein; WU09_03580                                                     N/A                 MSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
complement(710067..710738)         PHAGE_Pseudo_F116_NC_006552: hypothetical protein; WU09_03585; phage(gi56692976)     4.72e-38            MCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIERHGWPWKLMIGVGRILVPADGWYEWRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
complement(710666..711034)         hypothetical protein; WU09_03590                                                     N/A                 MLPGVVVLLVIDSWNDYRTLAAITNEAYDSALLEPARVLESSLEFAADGTLQVATPLYAQVMLESKGGTAKRRIYAICSALSVNLADSEYGPPGPAEVICAAASPRSQRLKTTSRSSGRMRG
711082..711093                     attR                                                                                 N/A                 GCGCGCGAACGC
complement(711094..711780)         transcriptional regulator; WU09_03595                                                N/A                 MRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLTRSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTVSESSES
complement(711761..712333)         PHAGE_Bacill_AR9_NC_031039: hypothetical protein; WU09_03600; phage(gi100073)        1.56e-06            MLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVPDHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHHETRYLRQRVHGPRSTDSPSSETDGHAHIAG
723324..723393                     attR                                                                                 N/A                 CTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCAACC

#### region 2 ####
3244240..3244252                   attL                                                                                 N/A                 CGCCTGGAAGTCC
3244625..3245575                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; WU09_15435; phage(gi52430457)     3.36e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
complement(3246020..3246331)       cell division protein ZapA; WU09_15440                                               N/A                 MERVDVTILGRDYSLACSAEEKPVLMAAVRHVDQLMLRIQGSGKVSSNERIAVMAALQVAGELLAMKAPDGPLGGLAVGDFKRRIEEMNLMLDDALSGQEKLL
complement(3246331..3246861)       hypothetical protein; WU09_15445                                                     N/A                 MQVLPNIAVFLSLREEARSVPGWFTIAPMLQDLDQLAARIGQLVQRTRHLHAERDALRVRLNDSESEQRKLKQRCADFETELQALQARLREHDGATATQLAEAQQTEVALREQLAREAAERQALESRVSAREAELQGNLRARDTDLQRLRVAASTARERIDAVLARLPGAPAGEQP
3247024..3247974                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; WU09_15450; phage(gi52430457)     1.10e-112           MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3248264..3248728                   tricarboxylate transporter; WU09_15455                                               N/A                 MQLRNRQDFWSGVMFIVLGLGFSWQASSYQMGTAARMGPGYFPFWLGLVLALLGAIVLISALSKKATETAVEGFDWRIVFLVVGSVVLYALILKPLGVYLSVFILVVVSSLASHEFSWKVAVANGIFLVVFSYLAFIKGLGLIFPLWPSFLGMN
3248743..3250248                   hypothetical protein; WU09_15460                                                     N/A                 MELFDNLMLGFSVAFTPENLAYALLGCILGTLIGVLPGIGPVPTIAMLLPITYVLPPVAGLIMLAGIYYGAQYGGSTTTILVALPGETSAVVTVLDGHQMARNGRAGAALAIAALGSFFAGCVATLLLAAFAPPLAEVSFKFGPAEYFSLMVLGLVGAVVLASGSLPKAIAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEIMTNLEQKENRVDITDKIGSLYPNFQEFKEAAPAVVRGTALGSALGILPGGGAVLSSFASYTLEKKISKNPERFGKGHPAGLAGPESANNAAAQTSFIPLLTLGIPGNAVMALMVGAMTIHNIQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLIGLWVKLLKVPYRILFPAILVFCTIGVYSLNYNTFDIFMTAAFGVVGYVWAKLKCEGAPLLLGLVLGPMMEENFRRALLLSRGDFSTFVTRPLSATLLAVALFLVVLVALPAIRKKREETFVEEE
3250505..3252109                   gamma-glutamyltransferase; WU09_15465                                                N/A                 MKFDWNNPYPSTRIPVFARNVVATSHPLAAQAGLRILALGGNAADAAVASAATLALVEPASNGLGSDCFALVWDGARLHGLNASGTAPAAWSPGYFQRKHQGAIPLRGWDSVTIPGCVAGWASLHDKLGSLPFADVLAPAIEYAERGFAVPPTVQRRWADQVDPLRSLPGFAEHFLPHGRAPEVGEHFVLAGAAATLRRIAASGGRDFYEGETAQKLVAHAQAHEAALTLGDLRDYAPQWVEPISQAYRGHALHQLPPNGQGLAALIALGIVEHFDLASRPAEHPDTQHILIEAMKLAFADVHAHVADAAHIRIRVEQLLDPAYLAERARLIDLRRARVYNAAQAPQGGTVYLACADRNGMMVSFTQSNYMGFGSGIVVPGTGISLQNRGCCFSMDPDHPNVVGGGKRPFHTGIPAFLTQDGAPLMSFGIMGGNMQPQGHLQALVRMLDYRQQPQAACDAPRWKWNRGLSVDIEAAMPAQVTDALRARGHIVEVAAPADKDFGSGQFIWRLGDPAVDGYVAASDSRRDGLAAGF
3252165..3253070                   PHAGE_Synech_S_SM2_NC_015279: 6-phosphogluconate dehydrogenase; WU09_15470; phage(gi326781984)     2.19e-07            MATIGSKTYDTTTPRNVAFLGLGVMGLPMAGHLARAGHQVTVYNRTAAKAQAWAAEFGGKAAATPREAAAGAQIVFCCVGNDDDLRSVVLGADGAFAGMQAGAVFVDHTTASADVARELYAAARELNLQFIDAPVSGGQAGAVNGALTIMCGGDSATFEDIKPVAHAFGRAVTLVGPPGAGQLAKMVNQVCIAGVVQGLSEAIAFGQTAGLDMKLVLDVISKGAAQSWQMENRGATMVDDQFDFGFAVDWMRKDLGLVLAEARNNGARLPLTALVDQFYGDVQKMGGNRWDTSSLIKRLRD
complement(3253511..3254413)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; WU09_15480; phage(gi52430457)     3.38e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3254600..3255352                   PHAGE_Flavob_Fpv3_NC_031904: recombination endonuclease subunit; WU09_15485; phage(gi100056)     1.05e-31            MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQRLAEGAVVYPAAPFRALDQLAPADVRVVILGQDPYHGPGQAQGLAFSVPDDCKCPPSLRNIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALIAEVARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTNAWLQQRGQKPVDWSGEQNNASRQGEFAL
3255627..3257315                   PHAGE_Strept_YMC_2011_NC_018285: Helicase; WU09_15490; phage(gi399498700)            1.70e-06            MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPGNKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPRPSTGGPRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRPQRDFGDRPQRDASDRPQRSFGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRSFGDRPQRDVGDRPQRDFGDRPQRSFGDHPQREGGWHGAPREGRSFDKRPGGPAKRFAKPAAPRRG
3257404..3258594                   hypothetical protein; WU09_15495                                                     N/A                 MQRPASSSLPPLDPAASAHSASVARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYTAGATKLASPADAQGPALPAGDFVTAPELTPLFAATVARQVAQVLRATDTASVLEFGAGTGALAEGVLRALAGMDCPARYLIVEVSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGTVQERGVTVDADGAFAWQDRDADAPLAQAVAQRMPPLPGYVSEINLQAEAWVRGMGLWLQRGAALLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFVAPGLQDITSHVDFTAMADAALAGGLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAVGRDMPEPLLGFARGDRRGTL
complement(3258609..3259703)       PHAGE_Sinorh_phiN3_NC_028945: tRNA nucleotidyltransferase; WU09_15500; phage(gi971759164)     2.24e-61            MSRTDDPGVAGLRVYIVGGAVRDDLLGLPAGDRDWVVVGATPEDMARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDDTAVRAEIDRAAAAGLPLAGRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALAASATPAAQLDLIERCDALRKPERFDALLQAAAIVAPVDLSAWRARVQAVRAIDAGAIARQCAGDPARIKPALRQARLQALGGA
complement(3259700..3261763)       PHAGE_Pseudo_AF_NC_019923: putative structural lysozyme; WU09_15505; phage(gi431810307)     3.32e-16            MRGWLPVLALFTAACAPVDAQQRAAASTAPAAVSMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRKQWSVLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGDWIQAAARAGDFETVRRLGPVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWALYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYIFEPKDQKSYDQMMKNPMKWLVRQDKSPVGRNEKELVTLALARLNKPDVSVADSYLRREWSRHLPRQNLAWVRSQYALVAVLNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPVWVYWKARGQAALGRAQQASQAYASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIAEARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAAELARAEGIYDRVVNTSERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLMQLMPATAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAGPGRPRNWRASFGHPVEGAIFAETIPFNETRLYVKNVMSNAVYYAAMFSGQPQSLKERLGSIVPPQAALATNQR
3261790..3261801                   attL                                                                                 N/A                 ATTTCTGATACC
3261839..3262519                   5-formyltetrahydrofolate cyclo-ligase; WU09_15510                                    N/A                 MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWLNLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQWVESGIAVCLPAVQERDAPLVFRDWTPDSAMRTGAYGVQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAWQAAGASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSRFLLR
3262830..3264170                   PHAGE_Burkho_phi1026b_NC_005284: gp59; WU09_15515; phage(gi38707949)                 5.08e-45            MQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYATAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLARPLGGAVFGHIGDRIGRKKSLVITLLLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDRSKRTFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSVNESPDFLAEQAEKARLKDAAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTNTFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYIATRIGSRRFLLITSFLSIFTPYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSGAIFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA
3264172..3265191                   PHAGE_Rhodoc_E3_NC_021347: putative histone deacetylase protein; WU09_15520; phage(gi509142389)     2.36e-06            MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKFDVREPVDAGAGAIGAVHSLDYLRFLREAHARWKQLPDDWGDEVVSNVFVREPNALRGVLAQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARRDAAGGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFYPVVAGFENERGAGEGYGYNVNLPMPHGSPEPVFFDRLQQAQRAIELFQPDALVLSLGFDVFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGYYIEGLEDNAERFFAGLAKA
3265255..3266226                   LysR family transcriptional regulator; WU09_15525                                    N/A                 MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHLSQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGEEIYRLAREMYGMVARVEEAAIQDEDDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFSVDVMQSAAILDALAKRVPALGLCLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLSPLTIFRDQQGFTGRIVGTSPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEHNVAEIDVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEMRAR
complement(3266291..3267193)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; WU09_15530; phage(gi52430457)     7.47e-104           MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(3267340..3268182)       5,10-methylenetetrahydrofolate reductase; WU09_15535                                 N/A                 MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFGAGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRDQLRDILAAYREQGVRRLVALRGDLPSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNKVQAGADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRWIRLRLAEYGDDKASIRAFGLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA
complement(3268182..3268517)       membrane protein; WU09_15540                                                         N/A                 MALILVWILNAVALLAVAYLLHGITVASFGSALVAALVLGLLNMLVKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSVLRGFQVNGFWWAVAGAILYSIIAGLLTKLIP
complement(3268588..3270006)       S-adenosyl-L-homocysteine hydrolase; WU09_15545                                      N/A                 MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAKPGSEEERVLFAAIKETLGRDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALVALRAQVWVTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNYHVITRQHMEAMKDQAIVCNIGHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGVKLSTLSKQQADYIGVPVEGPFKPDHYRY
complement(3270286..3271326)       GDP-mannose-dependent alpha-mannosyltransferase; WU09_15550                          N/A                 MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRTVPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIATEGPLGLAARRMALRRGWRFTTSFHTMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSRGVDARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRKFPAAHFAGPQADDRLAAYYNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAVVQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDAVARDLLAAFTPLVEAPLALPPAAQRI
complement(3271406..3271657)       hypothetical protein; WU09_15555                                                     N/A                 MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICRGCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRRNNY
complement(3271768..3272931)       S-adenosylmethionine synthetase; WU09_15560                                          N/A                 MANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRPIYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA
3273215..3274069                   lipid A biosynthesis lauroyl acyltransferase; WU09_15565                             N/A                 MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQAGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLGKVVSDDYAIVEAARAEGRGILFLTPHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLETARNTSAVNAVPATMQGVRTLRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGGRGWRIHYARVPEPLPDGPQEQAALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDSARQEPER
3274066..3274956                   acyltransferase; WU09_15570                                                          N/A                 MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRIVRRNLELCFPGQPEAVRERWTREHFRALGQSIVDRGVLWYGSPEAVREMVTQTGAERINALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARFNEVFLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSIFVPFFGVPAATLLATAQLARKWNAAVLPILDFWDPRTGRYHVEVLPELPDFPGDGSLEDATTRLNRELESWVLRCPSQYYWVHRRFKTRPLGKPKLY
3274999..3275910                   diaminopimelate epimerase; WU09_15575                                                N/A                 MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGPAISVFSGQVDIDRLVFTSGLHR
3275937..3276629                   hypothetical protein; WU09_15580                                                     N/A                 MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSRAISLGERQIQTLRERTRELEWRLSELIRNANSNETIGDHLSQWCCRMLAEADAQHVPGEIALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFEAVSWLDAKPKSLALVALRPDADAPTFGLLVLGSDDAERFAPDMGTAFLEAIGKLASAALRRLGTPPLAAA
3276644..3277624                   PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; WU09_15585; phage(gi100018)     3.32e-16            MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTSR
3284229..3284240                   attR                                                                                 N/A                 ATTTCTGATACC
3289402..3289414                   attR                                                                                 N/A                 CGCCTGGAAGTCC

#### region 3 ####
3755217..3755229                   attL                                                                                 N/A                 AAGATCCGCGATC
complement(3755256..3755462)       integrase; WU09_17805                                                                N/A                 MSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAEQRAAIVETIARGEFDPLVAPRRQ
3755606..3755618                   attL                                                                                 N/A                 GCGCCACCGCGCC
3756467..3757126                   haloacid dehalogenase; WU09_17815                                                    N/A                 MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEYLRLAYGCGRYVPYEQLVREAARATGLPESAPAALEAGWHELPVWDDARALLRALRPHCKLAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAAAFVAGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR
3757154..3758299                   alanine racemase; WU09_17820                                                         N/A                 MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAAGITDILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW
3758440..3758775                   hypothetical protein; WU09_17825                                                     N/A                 MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAPTKDQTQA
complement(3758850..3759710)       PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; WU09_17830; phage(gi414086941)     3.01e-83            MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLVRVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAELYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAPVQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADARRQQFTAEADGIRLRGEAEAASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALPFIGIK
complement(3759974..3760675)       glutathione S-transferase; WU09_17835                                                N/A                 MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMRRRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA
3760845..3761240                   endoribonuclease L-PSP; WU09_17840                                                   N/A                 MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDGTKLADAPFEAQARQVLDNVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGAARPARAVVPTGPLHYGFKVEVEAVALA
3761398..3762300                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; WU09_17845; phage(gi971753894)     1.89e-11            MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3762311..3762952                   hypothetical protein; WU09_17850                                                     N/A                 MKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEEVLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVYVVLAAAMGTDTWTVRTKEIPGGVRVSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQWMTCEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG
3763119..3763361                   hypothetical protein; WU09_17855                                                     N/A                 MEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPELLQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA
3763508..3764410                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; WU09_17860; phage(gi971753894)     5.06e-12            MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3764446..3764913                   PHAGE_Burkho_Bcep176_NC_007497: gp36; WU09_17865; phage(gi77864661)                  3.16e-55            MSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSERESYIKFSHAEPVALTAILASNGLDDALWALRCVPGVDRDARLFAVWCARQVEHLMTDQRSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT
3765147..3765524                   hypothetical protein; WU09_17875                                                     N/A                 MLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
3765521..3765703                   membrane protein; WU09_17880                                                         N/A                 MSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
3765707..3766693                   PHAGE_Entero_phi80_NC_021190: phage recombinase-annealing protein RecT; WU09_17885; phage(gi824479614)     3.19e-76            MNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDPAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGRDDQGGIQE
3766690..3767337                   PHAGE_Pseudo_YMC11/02/R656_NC_028657: putative exonuclease; WU09_17890; phage(gi966197818)     1.62e-35            MNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFADFVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA
3767395..3767922                   hypothetical protein; WU09_17895                                                     N/A                 MFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEFHPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLIDRVRLKHDLKGAKVLIGFGLGGSSDIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAIEKQGALGLNLEPEAA
3767959..3769143                   PHAGE_Acinet_Ac42_NC_014660: hypothetical protein; WU09_17900; phage(gi311992508)     3.60e-09            MENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVADERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALDAAITALRWSAGALQALNIEADKITLDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVMTERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPLDTSPGHSAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYENRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDADIPASLAQLVAAVKGMTKLYPHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN
3769154..3769495                   PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; WU09_17905; phage(gi985757664)     5.12e-13            MELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLTDDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGCAAHKYGGIEAATRRAIVRAAAEIGAKMQEAAHA
3769488..3769607                   membrane protein; WU09_17910                                                         N/A                 MPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE
3769608..3769808                   hypothetical protein; WU09_17915                                                     N/A                 MEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
complement(3769805..3770794)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: integrase; WU09_17920; phage(gi971753914)      5.63e-59            MGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVRIARFLKEEADLCAKLIHTISTADLGAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRERIYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRAVALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD
3771695..3771707                   attR                                                                                 N/A                 GCGCCACCGCGCC
3777105..3777117                   attR                                                                                 N/A                 AAGATCCGCGATC
