gi|00000000|ref|CP011360.1|  Bradyrhizobium diazoefficiens USDA 110, complete genome. 9106064, gc%: 64.06%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1118475..1118486                   attL                                                                                 N/A                 GCCATCCCCTCG
1120108..1120119                   attL                                                                                 N/A                 CGTGCGCGGTCA
complement(1120522..1121232)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; AAV28_05115; phage(gi557307613)     7.28e-29            MAKAFEEQRRSPDLEALPFEDRIGLLVDREAAERDTRRLTTRLKIAALRQTACVEDVDLRTPRGIDRAVFAKLVEGRWIDRHENLLVTGATGLGKSWLACALGHKACRDNRSVLYHRVPRLFEALALARGDGRYARLLKSLGRAQLLILDDWGLSVLTAAERRDLLEILEDRHGRASTIVTRQLPVDTWHGAIGDPTVADAILDRLVHNAHRLQLTGESMRKRSAKTITLDGQPEH
complement(1121238..1122617)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; AAV28_05120; phage(gi557307612)     1.88e-17            MPTQRLSMRRIKEVLRLKHFQGLPERAIARSVGVSNGVVHSYLSRARSAGLSWPLPEGMTDEDLELLLFPAPRPASQSPQRPVPDWSYIDKELRRRNVTRRLLWEEYRAVNPDGFGYTWFCTTYEAWKGRVRPSMRQIHLGGEKVFVDFAGDTIDIVDPLTGEVQPMKLFVAAMGASNYTYAEACPSESLADWIRAHVNLFTFLSGTPTFVVCDNLKAAVSNPDRYDPGLNRTYAEMASHYGTAILAARPRRPKDKAKVEVAVQIAQRWILARLRNQRFFSRAELNAAIKTLVDELNARQMRGFGSSRAELFAELDKPKLTPLPDQPYAFARWKRCRLAPDYHVEVDGHWYSAPYRLIGELVDARIDDRTVEIFHKGQRIASHARAPNRRGHTTIADHMPSAHRRYGEWTPAAVIAAGERIGPSTAAFFQAVIDARPHPEQGFRTCLGILALVKSYGAD
complement(1122746..1123552)       PHAGE_Salmon_9NA_NC_025443: putative tail tape measure protein; AAV28_05125; phage(gi712914006)     9.00e-17            MMGGKNVVDQFIASQSKSPEGMKAEVATYGLLPGAMEAMKLQLQTESIARANNTAITAAQQVQLDLLKQKTSEYAMTLAGLQTIQANLTPSESYLQEPKIQAQFNANTISAQQFLDAQQRLAENAQSTWNTAGASMAGEFAQLSQEFGKHSMAMATAAKAFGIVEARINTYTAFTKALASAVPPFNDALAAGVLAAGMAKVAAISSMSIPSFSTGGFVSGAGTSVSDSIPAMLSNGEFVVNAEATQRNRREIAQQSGSRQFHARFAGS
complement(1124970..1125161)       hypothetical protein; AAV28_05135                                                    N/A                 MAVNSVGGNGAAPATQQTQDAGFQNQMAEFERVSQKVQAQAVAMRRITTELSSEKKVADERVQ
1125573..1126112                   PROPHAGE_Brucel_1330: IS5 family transposase orfA; AAV28_05140; phage(gi23501422)     9.11e-24            MLIRGRENARWFFWLNDRQWARIEPHLPRGLTGPDRDDDRRIVSGIIHMLQSGARWRDCPREYGPYTTIYNRFNRWAKRGRWCAIFEALAKPGEDGVVLSLDSTSIKAHRCASGGKGEAQSSNRPLARRPHDKNPCAERSALPAGRPASDSRPGCRYRCGSRCPGARATHERAPRRQRV
1126081..1126353                   PROPHAGE_Brucel_1330: transposase, interruption-C; AAV28_05145; phage(gi52430458)     5.17e-21            MSVLLADKGYDGDKLRGAIIRRGAKPVIPNKSNRVVIHRFNKRAYKGRNVIERCFCRLKDFRRIAMRYDKLARNFLAAVHLAALVAYWLN
complement(1126403..1127752)       PROPHAGE_Mesorh_MAFF303099: transposase; AAV28_05150; phage(gi13475318)              2.35e-40            MIHGWSALGGLTMPGWEDELERWLMPFLDRLGHKTRQRMCPLYVAGLIGPGDRKSVQPMAERLVTSNYDQLHHFIADGVWDATPLETELLNQADRLVGGRDAVLVIDDTSLPKKGERPVGVAAQYASALGKTANCQTLVSLTLARGEVPVMVALRLFLPDSWTSDMPRLKRARVPIEHRTPRSKPEIALAEIDRAMAANMRFGCVLADAGYGLSAPFRQGLTERGLAWAVGIPRHQKVYPVDVKLIWPITKVRGKPRKHHVPDILSIAAEQMLASAKWKTVSWRSGTKGRLKARFAALRVRTADGPPQRIWDKGQQHLPGDEVWLIGEQRASGESKYYLANLPATTDLRTLAATIKARWICEQAHQQLKEELGLDHFEGRSWQGLHRHALMTMIAYAFLQHRRLAYAGRKKKNQRASASTNHARRTPCHRRSHPSAAASAMPILPKANP
1127845..1127856                   attR                                                                                 N/A                 CGTGCGCGGTCA
complement(1128143..1128511)       hypothetical protein; AAV28_05155                                                    N/A                 MSPLSHHLRSGSARAYRAHRTRRDSTCSTCRKADDNEPPTEHRNPRSIRGVRIAWLLAAAGRHDGPSQATIDARRSHVIRRFVNIDRLSDVGCADRSCCMRDSRRLLLMQQSSGPRGISFCR
1128652..1130190                   hypothetical protein; AAV28_05160                                                    N/A                 MAYLPVAGLPVVGALDSTVNGVGSEGVVASPAFSTLLGQYVTPGAYQYLPAGAAVVVAPVVVPAGGVTTAVVAPAVVTPVVAAPVYMMAPPPPFMLLSQQSSGSEPSVDPVWTHEVKDGKATINLGDKYTITANEKDGTWTVRNNQTGHVTKIHGDPHVDANGDGKDDFDFKKDMTFQLDDGTKITVNNVDYGNGETISSRLTITNGHNAMVVEGLGDDKDGKNNLRVTQSNAGMTLDELTPDGAQTIHESGQGWVDGAGGVVNQASIDAGEQGRAPGNYQSASATPASATPVFFVPPPPPPLAMVPFAVAQTPAPSSQPAPVWSHEVKDGKATINLGDKYTITADEKDGTWTVRNNQTGHVSRIHGDPHVDANGDGKDDFDFKKGMTFQLDDGTKITVDTVNYGKGKTISSKLTITNGDNAMVVEGLGDDKDGKNNLKVTQSNAGRTLDQLTSDGAQTIHETNQGWVDNSGRKVTQSVINHNENPDAPPDFKTMMREAMFRRIFGRDAQPA
complement(1130643..1130867)       hypothetical protein; AAV28_05165                                                    N/A                 MIESKTCQVRLGTRQQLDAHSMIFQVRCELLRESECTWIFLAAGCCDVPLASPTADFDGNGDAQSHGASGFVRG
complement(1130905..1131108)       hypothetical protein; AAV28_05170                                                    N/A                 MNADAADINATASQVGAPSDTAENGGDDTRAALLRRAFEKALVSVATQVISDSQSDMDEAMSELDDG
1131388..1131729                   hypothetical protein; AAV28_05175                                                    N/A                 MYRGEGRIRYRRCTGRHHIRLLFRQLAIRGTETRPLQIPLRCLGELLGYRFSIERLLSYTDEVSGSSQQCRTPRPAEMQRFGHRRALMMSTAVVGDLNNIRPLVPITPYRLRR
complement(1131737..1132036)       hypothetical protein; AAV28_05180                                                    N/A                 MAGCAPVDLSRERRVQPAGSRHAHLIAGIWTGFKGDRGTKSKPAPGPHLVYGFLTTDEERDVWMRAPRDEAKALQRPLPDDALKILMRGADKEDQPTAG
1132475..1133185                   PROPHAGE_Mesorh_MAFF303099: transposase; AAV28_05185; phage(gi13475314)              2.57e-90            MISYPVWLYFRLPLSLRMVEEMLAARGIGVTYETVRQWGRKFGKPFSDRIRQRTPPRGDKWHLDEVVISIAGEQHWLWRAVDQSGFVPDVLIQRRRNSRVAQRLMKKLLKSAGTPPRVMITDKLRSYGAARAKMGLHVEHRQHKALNNRAENSHQPTRRRERIMTRFKSSRQAQRFLSVHDQVANLFHIPYPGAATADFRRASRERAFATWREISMTSAIADSRPLRIASFGSAVD
1137026..1137037                   attR                                                                                 N/A                 GCCATCCCCTCG

#### region 2 ####
4318570..4318584                   attL                                                                                 N/A                 TCTATCGCCGCTTCG
4331056..4331637                   PHAGE_Caulob_CcrColossus_NC_019406: UPF0114 protein; AAV28_19805; phage(gi414088293)     1.10e-30            MSVEPAPTTEARPPSPRLGLLPMIIFGSRWLQLPLYLGLIVAQCVYIALFLKELWHLSWHALDLTEQQIMMSVLALIDVVMISNLLVMVIVGGYETFVSRLDLQGHPDEPEWLGHVNASVLKIKLAMAIIGISSIALLRTFIEAGNLGSNRAGFTETGVMWQVLIHITFIVSALGIAYVDKLSDSGMRNKHAE
complement(4331755..4332072)       hypothetical protein; AAV28_19810                                                    N/A                 MTTFDKREQGFEAKFAHDEELIFKATARSNKLLGLWAAGQLGLSGDAAKSYSTALATDHLESRTMDEVLDKVSGDLAAKGVAREQVAAKFQECLHQAIQQLEAKE
4332326..4332541                   hypothetical protein; AAV28_19815                                                    N/A                 MNRELREFRRLERVCLEQAALSTMDLARHGLLKVADDCRIAAEAIEAQSPRGALAGAVQALKLAFSTTQRH
complement(4332597..4332788)       hypothetical protein; AAV28_19820                                                    N/A                 MTEDLSFRRKPLTPEQRQARDAARRIEAEKAMRDHEEAQKQFYANKERLRAERLAREAATAKD
complement(4333126..4333869)       PHAGE_Sinorh_phiN3_NC_028945: hypothetical protein; AAV28_19825; phage(gi971759168)     3.97e-13            MNQTSNPAALDKLKLRIQALRAKTIANGCTEEEALSAAAKVAELLDRHDLSLSDVDLRASPCERRVFETHRKKRIPLDDCIGALAHFCDCRVWREKNAAGESSYVFFGLGADVEVAHYLAELIDGAVRAELGRFKTSVDYSRFRHQERHLANASFALGMVASIADRLQAIKAGRDQVNESTGRGLVVLKTSVVDAEFDKLDLKLRTQRSTGRMVSMAAYEAGGAAGGSLAINPGLGEAQSGTTPKGR
4333991..4334284                   hypothetical protein; AAV28_19830                                                    N/A                 MRKIAVAVMFALIAPTALAQDHVPMYGEQSQDKTETQKADDIRAERAYQRSLGNVPDQKAVDPWGTARGDEASKKRAAPPKSVVKHSSKAKSGSTPN
complement(4334356..4334445)       tRNA                                                                                 N/A                 GGAAGGGTGGCCGAGTGGTTTAAGGCACCGGTCTTGAAAACCGGCGTGCCTGCAAGGGTACCGTGGGTTCGAATCCCACCCCTTCCGCCA
complement(4334514..4335680)       PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; AAV28_19840; phage(gi31415821)     1.31e-59            MKGCIKERSPGHWAIILDQRDPATGKRKRKWHSFTGTKRAAQLECARLISETSDGAYVEPSKLALAQFFDRWLKHIKPNVSPRTHERYEQIATKNIVPLLGAKILSKLQPIDISEAYGKALENGRRDGKGGLSPRTVHHMHRVLFSALGQAERWRLIPRNPAALLEKRDRPKIERKPVRTIDANSTAAAFDAARERRLFIPLILATLCGLRRGEITALRWRSVDLDNGQLAVVASTEQTDAGTIREKEAKSGRARTIAMPAMAVEELRRWRVMQAEELLRLGVRGDDDRHVVTQADGSPLQPRSLTHSVSEFLKEWRVTLHGLRHSHASHMLASNIHPKIVQERLGHSSIAITMDIYSHLMPNMQGEAAAAVDVAMRAAINKRTDDVG
complement(4335677..4335943)       hypothetical protein; AAV28_19845                                                    N/A                 MLYQRSTGMAEKVQEHLRIRLGARLLKRIDAEREKNGRTRTDEIEALLEEALRKREMREIVKEAMREEMATSDFYEALVGKFKREGTK
4336076..4336267                   PHAGE_Brucel_BiPBO1_NC_031264: prohead core protein protease; AAV28_19850; phage(gi100061)     4.69e-10            MTEKALTISVPEAGQRYFGLSRNAAYAAAERGDIPTIKIGRLLKVPVKALEQMLDCPRKTEAA
4336272..4336460                   hypothetical protein; AAV28_19855                                                    N/A                 MASKKENPALAARGNPVTVQADGSNNPEYALDTLRAQYLAEIFALPATTALTVAELAFGEAR
4336460..4336645                   hypothetical protein; AAV28_19860                                                    N/A                 MHVKALKQQIDCIRDHALVHYARGEQEELARQFREAARLIESSRTAGFVASLLPSDPRGAA
4336642..4337118                   PHAGE_Plankt_PaV_LD_NC_016564: crossover junction endodeoxyribonuclease; AAV28_19865; phage(gi371496244)     5.48e-29            MTRCLLGIDPGASGAIAFYFPSHPERVAVEDMPIAAGEVDAVNLARRVAAMAPDLVFLERVNAMPGQGVSSTFKFGRAYGVVLGVIGAAALPLHLVTPAKWKGHLRLSSDKEEARALALRLFPACADHFKRKKDHGRAEAALIARYGAETMRLIGGGA
4337115..4337336                   hypothetical protein; AAV28_19870                                                    N/A                 MSHPLMVSDPNVRKQLQLAGLRFMCSRARWLESEAKILGVNLKNGNLSSREVDARLEEMGALELVYPELMRCE
4337327..4338391                   PHAGE_Rhizob_16_3_NC_011103: p101; AAV28_19875; phage(gi195546631)                   9.54e-19            MRMRTPDVVQARPKGFGFELFGNIRCPTEAAKSHIIKGIFAYDETSAWVGPPGSLKSALLADAAVAIASGSDWFGHRNKHQTGVIYFALERADLVRRRLLAIAKTKGLERLPIAVVPAVVDLVRPDSVRKVLDTIADVEAEFYGPEYDKATGAGVVIFDTWAKLIAAGGGDENQAKDQGAIFANIQRIKNVTGGPHVALIGHTGKEADRGPRGSSAIVGDVDLLVTISGEEIKTATISKANDAPEGPLFSFKSKVHEFGLDEDGDAITVNIVEPTEAPAPAARSAKLSANQQTFFRILHDAGDAGLTLEEWNNEAKAVGIGANRKATLHDLRKALEDRSMVREYGGRWKVNHGG
4350075..4350089                   attR                                                                                 N/A                 TCTATCGCCGCTTCG
