gi|00000000|ref|CP011869.1|  Pseudonocardia sp. HH130629-09 plasmid pLS1-1, complete sequence. 242173, gc%: 70.29%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
67463..67474                       attL                                                                                 N/A                 CGCTGGTCGCGC
71593..72744                       PROPHAGE_Escher_MG1655: IS30 transposase; XF36_28495; phage(gi16132105)              2.85e-110           MARLGRPGMSDADRADLWVRWGRGESISDIARAIGRPPGSVFTVLKSTGGYVPPSRRRRPGTLTAAEREEISRGLAQYRSIRAIAAGLGRPASTVSREVARNKGRRAYRAVDAEDRAWRRAQRPKTCLLARRPLLCGFVAARLGEDWSPEQIAGHLAKHYAPGSGMRVSHETIYKSLFVQTRGVLAKDLQKHLRSGRPIRRNVHNTTGGQWRSQIPGAVSIHDRPAEVTDRAVPGHWEGDLLLGRGTTQIATVVERATRFTVLVALGGRDMHTVAHQLSRQMARLPEHVRKSLTWDRGMELARHTIVTARTGLDVYFADPASPWQRGTNENTNRLLRQYFPKGTRLDHITQAQLDRVAERLNTRPRKTLDFDTPADRFGALLR
73172..73183                       attL                                                                                 N/A                 ACACGCCGGGGG
73323..74096                       transposase; XF36_28500                                                              N/A                 MLSRLLAEERLRRGTRRGRRALDCDRHAVLVLRWFLDATRVAQLATDNQLSLSSTYRYLHEGIDVLAAAAPGLPGALLAARTAGHTHVHLDGTVIHTDRSRTPGPTPGVDLWWSGKHHVHGGNVQVLTAPDGWPLWTSPVRPGREHDTTCARGHPGLLDAIEDWTDDTHVVLADLGYDGENTRLTCPFKTPTGGGLSVDKRTVNTLHSAVRAVAERGNSLLKTTFKALRRVSFCPWRIGAITAAALVLLHVEHDRTT
complement(74097..74969)           PROPHAGE_Escher_MG1655: IS3 transposase B; XF36_28505; phage(gi16128284)             1.04e-44            MSVARFIADQRTFHRVPHTLACALLGVSISWLYKWLDRAARSDGGATATEKRRCAWDAAVAVAFDDAQRLHGSPRLHADLCEAGWRVSEKTVADSMRRQGLVARRIKRHNGLTRQDRTAPKFPDLLRRGFTAAEPNRRWVGDMTEIPTAAGKLYLATVIDLYSRRLLGAATGLHPNAELACAAIRMAVAARGGADRIAGVIFHTDRGSTYTAGAFTALCRRLDIRQSMGRVGSCFDNAAAEAFFSSLEWEVLSRNDFDTISRARAAVIDWCYGFYNHRRRHSEPFPVGAG
complement(74966..75256)           PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; XF36_28510; phage(gi24373865)        8.49e-14            MPEVRKRYDREFRDGAVRVVEETGKPIAQVARDLGVNEGTLGNWVARAREAREDTEGLSRGGVEELKRLRAENAELRMERDVLKRSVVLWVKEATK
76488..76499                       attL                                                                                 N/A                 CACAGGTCACCG
complement(77587..77949)           hypothetical protein; XF36_28530                                                     N/A                 MIQPPDLEARVAALETRISELAADAQAAREDATAARHLAAARDRDIADLMVKIDANRSAINALGEQTRERFDQLETKVDGGFAQIRGQLDGTAAGLESITGLLTTLIGQRGDDNPENPPR
complement(78167..78697)           hypothetical protein; XF36_28535                                                     N/A                 MATALRDSDRRAAALVGGVGDDLDLGVVELLDQAVFAGGAHVVAGPGQRGRGPHQPTGRVSENLHIHSVALVFPGEERPVIARSHADPVDRQQRAVEDHERLTPGHVERLVQARCDRGEDVDALADVAEHRRGANPEPAGQRGVGLALVQVRQHQQRLLSGRESAPPAAEVLAVPA
79342..81693                       PHAGE_Bacill_phBC6A51_NC_004820: DNA/RNA helicase (DEAD/DEAH box family); XF36_28545; phage(gi31415755)     3.86e-25            MRSVATGDLERELARLRAENARLLRLLGLTSEQARTPVPSQSGLFLERPGMVTASSTPQQKVAFFRAMFAAREDVYAIRWENERSGKSGWVPAVTGGWRRGTDRPRLRLGDDVIAAHLSGRDHIGLYPLMPGDTCRWLAVDFDGPAAMLDALAYLKAARAAGVPAALEVSRSGIGAHVWIFFSGAVSAAAARVLGMGLLRETIAVRGRMDLRSYDRLFPSQDVLPSSGGIGNLIAAPLHGRARKDGATVFLDLGTLEPHEDQWAYLSGVHRLSPAEVTRLAGRVGAVKVGGAVENLAPAMSTRTRPRSAAVVGLRLEAGCEVAVSELTPAALGTLKHAASMSNPLFGERQRRRLSTWNVPRFLLSYDETVDGRLVLPRGLGERIVSVLKEAGSCVEIADERTDGESHSFELSVTLREDQAAAVSDLAAHDLGVLVAEPGAGKTVMGCALIAEHGVATLILVDRKALADQWRSRVREFLGVRAGQLGAGRSSLRGVVDVVTLQTLARRQDVAELTAGYGLVLVDECHHLPAAAFENAARQIRVKRWVGLTATPYRRDGLDELIHHQLGPIRHTVTPPPAGTLGAADAPERQLVVHPTSYEYLGDADPSKPGGMAAIYRDLAADETRTDQVVGDVLEALGRGRNCLVLTQWKSHVETLAAKLREEGRDPVVLRGGMGVRERKAALARLEPGPAPLLVVATGPYVGEGFDCPALDALFLAAPIAFKGRLVQFAGRVLRPHPGKTTAEVHDYHDDLTAVLASSLAKRAPGYKSLGFPNPREATLAPH
81829..82914                       PROPHAGE_Pseudo_KT2440: transposase, putative; XF36_28550; phage(gi26991145)         1.52e-19            MFVRGLTPDEAQRLVRITRTARDRVRLRRAGIVLASVQGRTATEAAMMFAAKPQYAREVIHAFNQQGFAALDPKWSGGRPRRFGPHVRELICRVARNPPQQVGLPFTTWSLAKLVEHLAAAHRVVISVETVRQVLRDAGVRWQATKTWKASRDPRFVEKMNRILDLYDRAADGRLEPGARVICVDEFGPLNLLPRPGRGWFPIRRPARLRATYSRHSGVRHMFAGLDLASGQLFYRLRDRKRGREFLDFLRQLRRRFPTGGLHVVCDNFSPHLRTDVAHWCHDHDVELVLTPTNASWLNWIESEFTALRYFTLDGSDYPSHTAQEAAIAGYIRWANRHARPKKHFAPESKIRRPDYLPNVA
complement(83620..84702)           PROPHAGE_Pseudo_KT2440: transposase, putative; XF36_28560; phage(gi26991145)         4.89e-88            MGRSSSRLDGLHQTRDETESWARRRTSAAGLATRSKIVLAAAEGRSNTEVAAWLGVSRPTVTTWRSRFAEHRLDGLVDEPRPGRPRTVTDEQVERLVVLTLETTPADATHWSTRSMAAHLGMSQTTVSRVWRAFGLAPHKTDSWKLSKDPLFVDKVRDVVGLYLDPPERALVLCVDEKTQIQALDRTQPVFLMLPGSPARASHDYVRNGTSSLYAALDITTGKVIGSLHARHRAVEFGKFLRTLDREVPAELDVHLVLDNASTHKTPAIRRWLAAHPRFVLHFTPTSSSWLNLVERWFAELTTKKLRRSTHRSVRALNADVRAWIKTWNDDPKPYVWTKTADEILDSVAHYCKRITDSGH
84701..85021                       PHAGE_Gordon_Cucurbita_NC_031029: hypothetical protein; XF36_28565; phage(gi100019)     2.18e-43            MAAPRKYPDELRERAIRLVLDAKADPASAGGNIFKRIGEQLGINPETLRGWVKQVEIDNGTRPGTTTDDATRLAELEREVRELRRANAILKSASAFFAAELDRPSR
85033..85947                       PHAGE_Gordon_Cucurbita_NC_031029: hypothetical protein; XF36_28570; phage(gi100020)     6.55e-120           MEENKTQFGVEPICAVLKDAGVPIAPSTFHASKKRPPSARALTDAETLKEIERVHRDNFSVYGSRKVWAALCREGGVGGRRVARCTVERLMRRNGLRGVSRLRVPRTTVRAKGADRRPDLVERDFTAPAQDRLWVADITYIRTFSGWVYAAFVMDVFSRRIVGWQLSRNLYTDLALDALNMGIWTRQRAGADLSELIHHSDRGVQYVAVRYGERLAEVDAVASVGSVGDSYDNAMAEAFNSLFKAELVRNRGPWRGTDDLELAVAEYIDWYNHRRLHGELGLIPPVEHEALHAVTEPARQPAGA
86146..86973                       PROPHAGE_Shewan_MR-1: ISSod6, transposase; XF36_28575; phage(gi24374783)             8.80e-16            MARASTVERLVTDELWELIEPLLPRPRPRRRGARTGRPPVPDRAALAGIVFVLTTGIGWNDLPPELGCGSGTTCWRRLRDWQRAGVWDELHRVVLDRLGQAGVLDWSRAAVDSVSVRAKRRGEQTGPSPTDRGKAGSKYHVLCDRNGLPLHAVVTGANTHDSRILAELLDTNPGVRERRGQAGRPRRRPGKLHADKGYDYPRCRRYLTGRGIGVRIARRGVEDSSRLGRVRWVVERTMAWLLSFRRLGLRYERSRTSIEALLKLACALICLRRLP
complement(86992..87585)           hypothetical protein; XF36_28580                                                     N/A                 MARPRVTTKTKIFRIEIVLVDVEPTVRRVVEVPGEASLAVLHEVVQDAMGWTNSHLHEFEIDGVRYGLPDPDWDTGTLDEAKTKLFRVLAAGDDAGYVYDFGDNWHHVLVVDAVTIPEPGVRYPRCVEGQGACPPEDVGGVFGYSEFVDALADPDHAEHAERVEWWGSDRFDPHHFDLVATDRALERLAGASATARS
87716..88168                       PHAGE_Paenib_Tripp_NC_028930: transposase; XF36_28585; phage(gi971756982)            2.19e-22            MPRTAVLTDAQWARLAPLLPSSEGRRGRPFRDDRRVLEGIIYRYRCGLPWRDVPAEFGPWQTLWKRHRRYSGDGTWDHILAALLVEADAAEVLGWAVSVDSTIIRAHQHAATLKRDTGGRIELHESARRTSRSRAGTVPRRAVDEDPPAR
complement(88671..89216)           PHAGE_Microb_Min1_NC_009603: hypothetical protein; XF36_28590; phage(gi149882849)     9.07e-23            MVVGAADTYGRYGVLDRDAGAGRVLCHECGRWWLHLGTHLARAHGIRAADYRAAHGLSSGTALVGGGVRDKLSVSSSRPERLAHLQTVGDPDRARAGMTESGQRAPELVAGRSARARARRRDPSPEQVAELRGVSDVGEWARRAWVLIERDGVSAQGIARVLGIAKATVDARLRRYPRPAR
complement(89248..89559)           PHAGE_Gordon_Schwabeltier_NC_031255: RNA polymerase binding protein; XF36_28595; phage(gi100054)     1.46e-06            MRTDRGSLDELACSLITHGLITPLTVVPSEESGRYVINAGHRRRVGLRRAAELLRTTPEEFGHDHDSAEARAVELLGQVPCWVRPDLAAQWFYLGRMAVRVAT
95928..95939                       attR                                                                                 N/A                 CACAGGTCACCG
97120..97131                       attR                                                                                 N/A                 ACACGCCGGGGG
98793..98804                       attR                                                                                 N/A                 CGCTGGTCGCGC

#### region 2 ####
185892..185904                     attL                                                                                 N/A                 GCGGTCCGGGTCG
complement(197421..198038)         PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; XF36_29125; phage(gi526003651)     5.39e-08            MTGPDPYLDLDTGVLRNRLGIADPAELAQAEAELTALRLIELRQAPLPGRYDLDHLQDFHHYIFRDLYDWAGQLRTVSIGKGQLFCLPQHLESFAADIFGRLYAQQGLRGRDLDGFVTGLAELLGDINALHPFREGNGRTQRAFLAQLAHDAGYELRWTAMDPAENNRASALSLAGDSSALHTMLALLVRPLRQPPQSRPASTDS
complement(198035..198223)         hypothetical protein; XF36_29130                                                     N/A                 MARYEQLVGAARRRADVDEALASVRAEGLEPSAEGLALLDGVAAGSLSTDEARERVLARYRR
198497..198898                     hypothetical protein; XF36_29140                                                     N/A                 MSDSGAWITEDSMSSGDRFDSALRQLHSLRCIPTPTPDRPAGPDGPATGGPLPEASAELFTLLTQLAAITAELEHSDETAADPTARRLLADISDGLDHAQHAAMALLVSYRTEDGTAWCRRRAQTDPLASAWD
198932..200182                     PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; XF36_29145; phage(gi557307612)     5.02e-16            MEDWAEIRRLHRAEGVPIKEIARRLGVARNTVRSALRAPGPPKRERGPRGSLADAVEPQVRALLAQFPRMPATVIAERIGWEHSLTVLKDRIRQIRPEYVGIDPVDRVAYAPGEITQCDLWFPETTIPVGPGQERVLPVLVMTLGYSRFLSATMIPSRQAGDILSGMWQLISDVGRVTRTLVWDRESAIGGTGRVSAPAAAFAGTLATRIRLAPPRDPEFKGLVERNNGYFETSFLPGRRFASPADFNHQIDDWLARANTRTVRAIGGRPVDVLAHDYAAMTPLPPLDPPIGLAQRIRLARDYYVRVDANDYSVDPQMIGRFVDVAASPREVVVYCAGQVVARHDRSWARHAVITDPAHQHTAAAMRRALAHDRNTRQAAARRHLDGHPVTLRALPDYDALFGVDFVSTAEEASSS
200275..201030                     PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; XF36_29150; phage(gi557307613)     1.24e-64            MIAYLTRVLKTPTIAASWEQLAAQAREENWSHEEYLGALLQRQVADRESKGTVMRIRTAHFPQVKTLEDFNLDHLPSLRRDILAHLATSTFVAKCENVILLGPPGIGKTHLAIGLGVKAAHAGYSVLFDTASNWITRLAAAHQSGRLEAELKKIRRYKLIIIDEVGYIPFDQDAANLFFQLIASRYEQGSVMVTSNLPFGRWGETFSDDVVAAAMIDRLVHHAEVLTLSGDSYRTRARRELLAKHNRASND
complement(201145..202440)         PROPHAGE_Escher_CFT073: transposase; XF36_29155; phage(gi26246249)                   7.90e-119           MTSDLVDPSEGDPKPARQASAERAAAAAMVAEAKARGLALTGPDGLLKLFTKNVLETALNEEMTEHLGHDKNRADPGRESTNVRNGSRSKTVLSDAAGDVEIDVPRDRASTFEPQIVKKRQRRLTDVDEVVLSLYAKGMTTGEVSAHFADIYGASVSKETVSRITDKVVAEMNDWVGRPLDSVYAAVFIDAVHVKVRDGQVANRPVYAAIGVTVDGCKDVLGLWMGVGSEGAKFWMSVLVDLKNRGVRDVLFLVCDGLKGLPEVVANVWPQTIVQTCVVHLIRNTFRLVGRQDWDAVKRDIKPIYAAPNPNAALIAMDELDEKWGRKYAAMIRLWRNAWEEFVPFLDYDVEIRRVICSTNAIESLNARYRRAVRARGHFPTEQAAMKCLYLVTRSLDPTGTGRTRWTMRWKPVINAFAITFGDRWPGAETY
203546..203836                     PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; XF36_29165; phage(gi24373865)        8.49e-14            MPEVRKRYDREFRDGAVRVVEETGKPIAQVARDLGVNEGTLGNWVARAREAREDTEGLSRGGVEELKRLRAENAELRMERDVLKRSVVLWVKEATK
203591..203603                     attR                                                                                 N/A                 GCGGTCCGGGTCG
203833..204741                     PROPHAGE_Escher_MG1655: IS3 transposase B; XF36_29170; phage(gi16128284)             9.46e-50            MSVARFIADQRTFHRVPHTLACALLGVSISWLYKWLDRAARSDGGATATEKRRCALDAAVAVAFDDAQRLHGSPRLHADLCEAGWRVSEKTVADSMRRQGLVARRIKRHNGLTRQDRTAPKFPDLLRRGFTAAEPNRRWVGDMTEIPTAAGKLYLATVIDLYSRRLLGAATGLHPNPELACAAIRMAVAARGGADRIAGVIFHTDRGSTYTAGAFTALCRRLDIRQSMGRVGSCFDNAAAEAFFSSLEWEVLSRNDFDTISRARAAVIDWCYGFYNHRRRHSAAAGLSPINYENAALTRDAA
