gi|00000000|ref|CP012140.1|  Shigella flexneri 4c strain 1205, complete genome. 4683636, gc%: 50.84%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
235327..236232                     PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; AD871_01125; phage(gi24111655)     0.0                 Shigellaflexneri4cMDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(236289..236576)         hypothetical protein; AD871_01130                                                    N/A                 Shigellaflexneri4cMDEEYRKDLQLWFGLTHASFCVMPRVFMEAMPPEWQEKMAQLLFEYSDTIKTDVCGVHSCFVTAKDGNNRFMRMPEDILNYRHPRREFIESFLKK
236654..236956                     PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_01135; phage(gi24373865)       1.24e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWGKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
236983..237822                     PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_01140; phage(gi41057343)     0.0                 Shigellaflexneri4cMVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
237816..238871                     PHAGE_Entero_IME10_NC_019501: terminase large subunit; AD871_01145; phage(gi422934280)     0.0                 Shigellaflexneri4cMLTTSPFFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVFNTCEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRDIKKPKEKKIPAPIRPIARRT
238872..241037                     PHAGE_Entero_IME10_NC_019501: portal protein; AD871_01150; phage(gi422934281)        0.0                 Shigellaflexneri4cMADENRLNSILCKFDADWMASDEARTEATNDLYFSRVSQWDDWLSNYTTLQYRGQFDVVRPEVRKLVAEMRRNPVDVLFRPKDGANPDAADVLMGMYRTDMRHNTAKIAVNVGVREQIESGVGAWRLVTQYEDNDPTSNNQVIRRLPIHEACSHVIWDANSKQMDKSDAKHCTVINALSRNGWKEFAEDYGIDPDTLPSFQNPNDTWLFPWVSNDVVYVAEYYEVEEEKEKVFIYRDPLTGEPVSYYQQDIKDVIDDLANRGFIKVAERKVKRRRVYKSIITCTQILKDREKIAGEHIPIVPVYGEWSFAGDKECYEGVVRLTKDGQRLRNMIMSFNADIVARSPKKKPTFFPEQIEGYEYMYGGNDDYPYYLQNRTDENGNDLPIGPISYMENPEVPQANAYMLEAATNAVKEVASLGVDAQAANGQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYASMVNDIYDVPRHVTLTLEDGSEKDVQLYAQVVDYQSGNVVTLNDIRGRYECYTDVGPSFQSMKEQNRAEIQELLTKVPQGTPEFQMLMLQYFTLLDGKGVEMMREYANKQLVMMGLKKPETPEEMEMVQQAQQQPQQPSAEQIQAQGILLQGQAELLKAENQQAQIQVEAAKVEAQNQLNAAKIAEIFNNMDLDKQAELREYLRLVGQFQQQRSKDARANAELLLKDADQTHSQRMDFANLMRQVQIPSGGVAETPQ
241051..241962                     PHAGE_Entero_IME10_NC_019501: scaffolding protein; AD871_01155; phage(gi422934282)     0.0                 Shigellaflexneri4cMDQTTDIQASEELTLPGNHAAASADGLVVDNANDSAGQEEGFEIVRKDDEKPKQDPATNAEFARRRIERKRQRELEQQMEAVKRGELPEHLRVNPELPKQPDPNDYLSEDALAKYDYDQSRALAAFQQANSEWQIKAMDARSQAVAEQGRKTQEFTQQSAQYVEAARKHYEAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGANPEKTRQLLAMDGQSALIELTRLSERLTLKPRAKPVSEAPLPDEPIQGHAVAANISAIEKQMEAAANKGDVETYRKLKAQLNKGIR
241962..243257                     PHAGE_Entero_IME10_NC_019501: coat protein; AD871_01160; phage(gi422934283)          0.0                 Shigellaflexneri4cMALNEGQLVTYALDEIIGTVQNLTPMASKVTKYPPPAESMQRSSNTVWMPVEQEAPTQTGWDLTGNATGILELSVKCNMGDPDNDFFELRADDLRDERSYRRRIQASAKKLANNIESAIAKQATEMGSLVVHDTRAIGPSTGLPGWDFVSDAERLMFSRELNRDMGISYFLNPDDYRKAGRNLVDGDIFGRVPEEAYRNGTIQRQIAGFDEILRSPKLPAVTKSTATGVTVSGAQKFKPQAYTLDTDGNKENVDNRVATVTVSSTTGFKRGDKISFIGVKFLSQMAKNVLTDDATFSITRVIDGTHIEITPKPIALDDASLTKEEKAYANVNTSLADTTPVNVLNVATTTANVFWADDSIRLLSQPIPVTHELFAGMKTSSFSIPGIGVNGIFATQGDINTLSGKCRIAVWYSACAVRPEAIGVGLPNQTA
243302..243532                     PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; AD871_01165; phage(gi389060541)     5.06e-06            Shigellaflexneri4cMTHMIFRHGDMKKWKGVGYDFEIVKAEELQEYLDAGWFSHPDDLLKDVAEPEPEEKQRKKPGRKPKAAADEPDNEG
243510..244010                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; AD871_01170; phage(gi422934284)     2.82e-122           Shigellaflexneri4cMNLTTKGDLVLAALRKLGVASNATLTDVEPQSMEDGVNDLEMMMAEWLGGDASPGINVGYIFADADVAPDPGDEHGLSNNAINAVIFNLACRIAPDYALEASAKLITTARYGKERLVKLSAMDRAKAAKCKSGYPNRMPVGSGNQLAKWNGWNYFHRKEPCDNGSE
244010..245428                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; AD871_01175; phage(gi422934285)     0.0                 Shigellaflexneri4cMPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLRSFPGIAKRSDVNGVSRGVEYNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIDSGQVSPIASASIEKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASSIANGPQWCVLKTGLYDDVYRAIDFVYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVFDLEVESSTGVAQYADRLFLSATTDCINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNVGFKLRVITKSPVTLSGAQIRIE
245428..246276                     PHAGE_Shigel_Sf6_NC_005344: gene 9 protein; AD871_01180; phage(gi41057287)           0.0                 Shigellaflexneri4cMADSNLNVPVIIQATRLDTSVLPRNIFSQSYLLYVIAQGTDVGNVANKANEAGQGAYDAQVRNDEQDVILADHEQRISAAEATLVNHEERIRQAESTLQDHETRIAQNESDISSLDTRVQSLESQVSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGSLAPFFDTVNNKMVVFNENKTLLFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNAATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGAAFTATTIKIIAEQ
246276..246731                     PHAGE_Entero_IME10_NC_019501: head assembly protein; AD871_01185; phage(gi422934287)     2.54e-110           Shigellaflexneri4cMITFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTLDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
246734..247426                     PHAGE_Entero_IME10_NC_019501: DNA transfer protein; AD871_01190; phage(gi422934288)     1.87e-158           Shigellaflexneri4cMLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSKQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
247436..248767                     PHAGE_Entero_IME10_NC_019501: gp20; AD871_01195; phage(gi422934289)                  0.0                 Shigellaflexneri4cMATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEEQRNSIGTLAAGARLASSSPEAMQSWLQNNAGELARVGVNPHDVAQMYQQNPRQFGEFVDHLGMNSLGPEKYFDLQDKMQGRQVTMRGQDLDSQTAARNQAITMRGQDIQANLGQQRINLDAETNRINNENKRLDRMLSAETNDLKRQEIQSRIAANNQQLQQKQQALNDGYKDGINTLTTSMFTLNDIVSSPSLKSITGLRGVIPNVPGSQAADTQARLDTFKSQAYLTAVQAMRGMGALSDAEGKKLDQAVGSLQNSQSEESFRRNAGVILNTLNQKRNEAVGKYVQQNGIKRVEAPQASIDYLKQHPELSIDFINRYGYLPSLGQ
248768..250498                     PHAGE_Entero_Sf101_NC_027398: transglycosylase; AD871_01200; phage(gi849122275)      0.0                 Shigellaflexneri4cMANYRDLLEQAGARYGVPEGLMTALGAKESSYNPAAVSSAGAVGLTQVMPGTWRDMGYTDEQMQNPEYQADAGARYLAKMYQQFGNWRDSLQAYHDGPGNVMKAKRGEYTPGPEGRGYVDDRFAQWAGDPVTDSTVEQRATSAKVHPQQDPNNPFAQLEVQSSEQVSASGVQSDPNNPFAQIEQQAASQQPPQPVSSVAPKPVQQQTVNQANNAPTREEPSLMQQAGDWLTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPYAQAGESIGGYLVPGAGVAGNMVIGSLADAANQRGDFAENAAINAGLSIATHGLINGVTRGVRGASNIISGNKTSAQRATTAPTETSPFSGDAAAATNPAVHAAEARVAQGVPMTPATKNPEEVVRTVAAQKRPNLASSLDELDINPQAEVLESAERLNVDSLLPSHFSGNEQYKAVEQAIKSRAGSALQVQENEAIRQLAQGAGEIIDRVSGAKDALGMSDKFIDTVNGRMSALMKRSDQLYRNVEKAMPAGAKIDAPSTRSMLKQVAEDLGGMKNLDPIEKRVEVA
250624..250950                     PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; AD871_01205; phage(gi157166066)     1.55e-72            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
250950..251303                     PROPHAGE_Escher_CFT073: transposase; AD871_01210; phage(gi26249430)                  6.37e-45            Shigellaflexneri4cMPLLDKLREQYGGGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVKSGVSCYGNVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
251315..251833                     PROPHAGE_Escher_CFT073: transposase IS629; AD871_01215; phage(gi26250986)            3.70e-121           Shigellaflexneri4cMAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLQERLGHIPPAEAEKAYYASIGNDDLAA

#### region 2 ####
305711..305722                     attL                                                                                 N/A                 CATCCGGCAATA
307152..307655                     PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_01550; phage(gi557307573)      2.08e-110           Shigellaflexneri4cMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
307846..308949                     gamma-glutamyl kinase; AD871_01555                                                   N/A                 Shigellaflexneri4cMSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRRNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR
308961..310214                     gamma-glutamyl phosphate reductase; AD871_01560                                      N/A                 Shigellaflexneri4cMLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESAEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALTQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA
310329..310404                     tRNA                                                                                 N/A                 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA
310359..310422                     attL                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAGTTAC
complement(310419..311579)         PHAGE_Entero_HK446_NC_019714: integrase; AD871_01570; phage(gi428782218)             0.0                 Shigellaflexneri4cMSIKLRGGTWHCDFVAPDGSRVRRSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEACIRWLREKSDKKSIDDDKSIISFWMLHFREAILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGNPVPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDRAPKISTPRVKNGRIRWLTEEESKRLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
complement(311894..312238)         PHAGE_Entero_c_1_NC_019706: hypothetical protein; AD871_01575; phage(gi428781761)     7.59e-80            Shigellaflexneri4cMSDLAMKVLKWQSTGDVGISSATLASIACGLKKNIYGHHFGAPHDAADFRRCVALVEQIPEIRDSFDKVAKRVPAFKGILNEWDSLVDLLKSEMKIHGNKAPETYRRISELRKD
complement(312265..312432)         PHAGE_Entero_lambda_NC_001416: hypothetical protein; AD871_01580; phage(gi19263393)     3.90e-34            Shigellaflexneri4cMHFRVTGEWNGEPFNRVIEAENISDCYDHWMLWAQIAHADVTNIRIEELKEHQAA
complement(312521..312802)         PHAGE_Entero_lambda_NC_001416: ea8.5; AD871_01585; phage(gi9626275)                  2.03e-65            Shigellaflexneri4cMSINELESEQKDWALSMLCRSGVLSPCRHHEGVYVDEGIDIESAYKYSMKVYKSNEDKSPFCNVREMTDTVQNYYHEYGGNDTCPLCTKHIDD
complement(313005..313901)         PHAGE_Shigel_Stx_NC_029120: hypothetical protein; AD871_01590; phage(gi985761319)     0.0                 Shigellaflexneri4cMSKIDYQALREAAEKATCGEWSLEYGEGQFDGDDALIHRDVVGYLPICRIEGAHPESGFDEDFQIEQQANAEFIAAANPATVLALLDELERNQQYIKRRDQENEEIALTVGKLRVELEGKDKLIAELGKQCAEWERKALSNFEECAAMAERIEELQTKSAPDSFGIIGENIRTQDNRITSDPMFCVYQKREIVVDADYDYDRIVWVDEDGNEANKRQSRRLELLHENFREPPEKWRRVAVKDIDEFVTCCFTEQGCKDYLAANGHNLRLPFIYVNGGFRNAEYIGIRNWLAGIRIKGE
complement(313898..314380)         PHAGE_Salmon_HK620_NC_002730: hypothetical protein; AD871_01595; phage(gi13559831)     1.17e-110           Shigellaflexneri4cMKQMTLIEMDGFLKGKCIPRDLKVNETNAEYLVRKFGELESKLETALRECRSAGITIDNLEAKCAKMAAENTSLKQSEKEFNDFCREEFSEWEDDVTETPATDAFLAEVRAQGVEMYADNLDNGADDAERGGFDYAVKFLRSEASSVRLFADQLRKGGNQ
complement(314377..314541)         PHAGE_Salmon_HK620_NC_002730: hypothetical protein; AD871_01600; phage(gi13559832)     1.74e-31            Shigellaflexneri4cMRGLAYNPGILPAEMIIRQRVKPMPSREELLKRNSFPSVNQNKYLNAMLRSGKK
complement(314552..314845)         PHAGE_Entero_HK633_NC_019719: Abc2 protein; AD871_01605; phage(gi428782555)          6.96e-67            Shigellaflexneri4cMPAPLYGADAPRRCSGNSVSEVLDKFRKNYDRIMSLPQETKEEKEFRHCIWLAEKEERERIYQTSIRPFRKATYTHFPEIDPRLRNYRSRYGAISND
complement(314869..315252)         PHAGE_Entero_c_1_NC_019706: hypothetical protein; AD871_01610; phage(gi428781771)     9.79e-91            Shigellaflexneri4cMAHSITVRLNKPAREFQAGENIGFNIRAGVQYYDRQTKKKEWTNYSAVVFAKPGAQADYYRSVLVEGGIVEITGENIRVDVYQGQNGQSITLELLNAKIGFATSGNSQQQQSSNHQNHPEYDDSIPF
complement(315252..315857)         PHAGE_Entero_HK542_NC_019769: essential recombination function protein; AD871_01615; phage(gi428783375)     3.06e-149           Shigellaflexneri4cMSKEFYARLAAIQENLNAPKNQYNSFGKYKYRSCEDILEGVKPLLNGLFLSISDEVVLIGDRYYVKATATITDGENSHTATALAREEESKKGMDSAQVTGATSSYARKYCLNGLFGIDDAKDADTDEHKHQQNAAAKQSKPSPTPEQVLKAFTDAALQKNTVEELKQAFAKAWKMLEGTPEQHKAQDVYNIRRDELEGAAA
complement(315868..315993)         PHAGE_Shigel_Sf6_NC_005344: gene 29 protein; AD871_01620; phage(gi41057307)          1.26e-25            Shigellaflexneri4cMYTQKALWYRHNGDREGMRVCLNLSRVEVLNQRYFLGPCPF
complement(315959..316117)         PHAGE_Shigel_Sf6_NC_005344: gene 30 protein; AD871_01625; phage(gi41057308)          4.16e-31            Shigellaflexneri4cMSFTDNWSDEEFIRHMKELIGNEGDIHVTCNHSEGEQVTETHVHAESSLVSP
complement(316361..316729)         PHAGE_Entero_lambda_NC_001416: Putative single-stranded DNA binding protein; AD871_01630; phage(gi9626285)     3.77e-84            Shigellaflexneri4cMSNIKKYIIDYDWKASIEIEIDHDVMTEEKLHQINNFWSDSEHRLNKHGSVLNAVLIMLAQHALLIAISSDLNAYGVVCEFDWNDGNGQEGWPPMDGSEGIRITDIDTSGIFDSDDMTIKAV
complement(317213..317551)         PHAGE_Entero_mEp235_NC_019708: transcription termination factor Nun; AD871_01635; phage(gi428781848)     5.71e-78            Shigellaflexneri4cMLMVKKTIYVNPDRGQNRKVSDRGLTSRDRRRIARWEKRIAYALKNGVTPGFNAIDDGPEYKINEDPMDKVDKALATPFPRDVEKIEDEKYEDVMHRVVNHAHQRNPNKKWS
complement(317554..317859)         PHAGE_Entero_mEpX1_NC_019709: antitermination protein N; AD871_01640; phage(gi428781912)     1.27e-65            Shigellaflexneri4cMVTIVWKESKGTAKSRYKARRAELIAERRSNEALARKIALKLSGCVRADKAASLGCLCCKKKEEVVRKNRSIYYKDSNPLGNKIHAVQKIKLYSKLPYGAY
complement(318174..318824)         PHAGE_Entero_mEp235_NC_019708: prophage repressor; AD871_01645; phage(gi428781850)     4.62e-160           Shigellaflexneri4cMNTQLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHRRAIDNWYDTTVDCSEDSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVIDAGRKFLKPLNPQYPMIEINGNCKIIGVVVDAKLANLP
318905..319090                     PHAGE_Entero_mEp235_NC_019708: prophage antirepressor; AD871_01650; phage(gi428781851)     1.09e-37            Shigellaflexneri4cMYKKDVIDHFGTQRAVAKALGISDAAVSQWKEVIPEKDAYRLEIVTAGALKYQESAYRQAA
319206..319502                     PHAGE_Entero_mEp235_NC_019708: CII protein; AD871_01655; phage(gi428781852)          7.40e-68            Shigellaflexneri4cMAQASYSKPTQREIDRAETDLLINLSTLTQRGLAKMIGCHESKISRTDWRFIASVLCAFGMASDISPISRAFKYALDEITKKKSPAATEDFKQIDMQF
319535..319681                     PHAGE_Salmon_HK620_NC_002730: hypothetical protein; AD871_01660; phage(gi13559846)     3.38e-28            Shigellaflexneri4cMTKQLSPYQDKIHKHILRDRFLSSFKQPGRFRAELEKVKLMQKEKGHE
319674..320573                     PHAGE_Salmon_HK620_NC_002730: replication protein O; AD871_01665; phage(gi13559847)     0.0                 Shigellaflexneri4cMSNISNLAEAREARRLQQPHQSSGKGYALLHRKIMDVPFYKDAEAAHLWVHLILKAKHTPEYVMTDAGEILVGRGKLLGGRNSLAFETGLKPDRVQYLLRKFKKLGMIDWVSHGKFSVFSVEKYDDYQSNFVPADYQQITTSKPAIPMPVSNAVPADYQQITTDKEYNNIISNTDVLESATADKKSDKKKPSVSCQDVVDAYHEILPEAPRIRALNDKRKNQIRTFWRKAGVITRQLDGHGFTMQDWRNYLSYVGENCRWMFEERPNHQRGTVWHKKGFDFLLNDNTYLKVREGEHDDR
320563..321999                     PHAGE_Salmon_HK620_NC_002730: replication protein P; AD871_01670; phage(gi13559848)     0.0                 Shigellaflexneri4cMTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVDGLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDMLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPQSKKKGGF
322276..322716                     PHAGE_Entero_mEpX2_NC_019705: NinB protein; AD871_01675; phage(gi428765663)          4.05e-104           Shigellaflexneri4cMKKLTFEIRSPAHQQNAIHAVQQILPDPTKPIVVIIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQQDVVPNLAGNGFVVIGQSTSRMRVSEFAELLELIQAFGTERGVKWSDEARLALEWKARWGDRAA
322853..323029                     PHAGE_Entero_UAB_Phi20_NC_031019: hypothetical protein; AD871_01680; phage(gi100007)     1.45e-35            Shigellaflexneri4cMARQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRNRARK
323032..323391                     PHAGE_Entero_IME10_NC_019501: ninX; AD871_01685; phage(gi422934274)                  4.64e-79            Shigellaflexneri4cMDYSQLSDFEINVAVFEAIHNGSPDYKEGKNGAMVFISFEGDIVNGDAVEVEVERGSFNPCANPADAWPIIEKYRISIINLDEDEWGARGVTYRKSKRAIHENPLRAAMIVFLMMQRIQ
323391..323564                     PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; AD871_01690; phage(gi24371570)     1.94e-33            Shigellaflexneri4cMLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMADPNGQMLEEDDE
323554..323859                     PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; AD871_01695; phage(gi24371571)     1.22e-68            Shigellaflexneri4cMMSELRAGGIAIVIFSENKPEIGRCVELIEKVTNGYVFNFPGAGKHSWRDDTPGWLVKGDVSIYTNEPSGGFSYFYSDELMPIDGEDFSHEDEQQKELANG
323852..324142                     PHAGE_Entero_c_1_NC_019706: hypothetical protein; AD871_01700; phage(gi428781793)     7.00e-67            Shigellaflexneri4cMANLRKEARGRECQVRIYGVCNGNPETTVLAHYRMAGICGTGMKPDDLIGAWACSACHDEIDRRTHNLDNKDARLYHLEGVIRTQAILLKEGKIKP
324139..324501                     PHAGE_Salmon_HK620_NC_002730: holiday-junction resolvase; AD871_01705; phage(gi13559855)     5.05e-81            Shigellaflexneri4cMNEYQFVLPYPPSVNTYWRRRGSQYYISDKGQKYRKDVQKIIRQLKLDIFTKSRLRIKVIADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELENV
324498..324686                     PHAGE_Salmon_HK620_NC_002730: hypothetical protein; AD871_01710; phage(gi13559856)     8.69e-39            Shigellaflexneri4cMNATIQTIPELLIQTRGNQTEVARMLSCARGTVLKYNRDSKGERHVIVNGVLMVKQGKRGRR
324683..325201                     PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; AD871_01715; phage(gi100037)     4.41e-126           Shigellaflexneri4cMSIRELNLTKEQHDWLNGWLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDKKAFGILLSYYAHGSSKRAIASYYHATAKPRKMCGRGGEGWRKPSLATCRNEIDDILKASLFVLYQPMQNAFKMRKRVEKVKHVAVKSLDMQLAI
325265..325339                     tRNA                                                                                 N/A                 GGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTCCACGCTGTCCCGCCA
325345..325420                     tRNA                                                                                 N/A                 GCTGGTTTAGCTCCAATGGTAGAGCAGTCGCCTTGTAAGCGAATGGGTAGCGGTTCAAGTCCGTTAACCAGCACCA
325663..325986                     PHAGE_Salmon_HK620_NC_002730: holin; AD871_01730; phage(gi13559858)                  7.92e-72            Shigellaflexneri4cMKMPEKNDLLAAILAAKEQGIGAILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFIRDLLDFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKKAGVEDGGNQ
325970..326446                     PHAGE_Entero_c_1_NC_019706: lysozyme; AD871_01735; phage(gi428781798)                1.12e-115           Shigellaflexneri4cMVEINNQRKAFLDMLAWSEGTDNGRQKTRNHGYDVIVGGELFTDYSDHPRKLVTLNPKLKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIWASLPGAGYGQFEHKADSLIAKFKEAGGTVREIEV
326443..326880                     PHAGE_Entero_Sf101_NC_027398: Rz (i-spanin); AD871_01740; phage(gi849122322)         2.90e-99            Shigellaflexneri4cMSKVTAIISALVICIIVCLSWAVNHYRDNAIAYKEQRDKAASTIADMQKRQRDVAELDARYTKELADANATIESLRADVSAGRKRLQVAATCAKSTTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLR
326868..327020                     PHAGE_Entero_Sf101_NC_027398: hypothetical protein; AD871_01745; phage(gi849122324)     1.09e-28            Shigellaflexneri4cMPSMIAIILLIILHIWLCRQGDDHFWSESRLNISLLMLDIEHLARGKGLR
327225..327710                     PHAGE_Salmon_g341c_NC_013059: hypothetical protein; AD871_01750; phage(gi255252747)     4.05e-117           Shigellaflexneri4cMNNFVEITSRIGRMYQDFLISGKGSGDIIEEIDKLSAELRRNGCVNSIFFETLLKQGFMFDMINYNKVAPSASQKSYVYVLHAEDSGLTKIGFSRRVNKRISEISRMSGGKLNLIAKIPADRELETKLHQKYYNYRSHGEWFSLNRCHLKELKEMPGNELK
327959..328201                     PHAGE_Entero_Sf101_NC_027398: hypothetical protein; AD871_01755; phage(gi849122327)     5.66e-50            Shigellaflexneri4cMAEITPMTEEQKFQLEIYKLVMNQNAAAEEAFQFIGTDELKLELFKIHFQSGGANSDITTRTIEAVRKSKEALDLFTAGE
328204..328491                     PHAGE_Pseudo_Lu11_NC_017972: hypothetical protein; AD871_01760; phage(gi388684783)     1.48e-11            Shigellaflexneri4cMEQQELPRWQCHKQVWALKIRHIDHKPNPDLSGVSGASSYGATIHPEDGTYAPFDVSPEYVNKHQPVAGGYYVVYEDGYASFSPADSFESGYTKI
328503..328991                     PHAGE_Salmon_SPN3US_NC_027402: hypothetical protein; AD871_01765; phage(gi849122535)     1.92e-26            Shigellaflexneri4cMTTVAWDGKTLASDTQASTGSVVCSLSEQKIYTPPESGWEIYGSKVLAFGCSGDCGAEMELQDLLKHNLTYASEFLPTFSFTALAIIGAGRAYIITKEKGETRASISLQVEPYAIGSGDLIARTAMHCGKNAREAVQVAIDLDCYSGGSVDSFPAGKQTEGK
328997..329422                     PHAGE_Salmon_HK620_NC_002730: terminase small subunit; AD871_01770; phage(gi13559865)     4.43e-81            Shigellaflexneri4cMATEKKKGGRPSDYMPEVANDICALLSSGESLRKVCERPGMPSKTSVFRWLAEHQEFRDQYAKATETRADSIFEEIFEIADGVIPDAAEVAKARLRVDTRKWALARMNPRKYGDKVTNELVGKDGGAIQIETSPMSTLFGK
329419..330831                     PHAGE_Salmon_HK620_NC_002730: terminase large subunit; AD871_01775; phage(gi13559866)     0.0                 Shigellaflexneri4cMTSINPIFEPFIEAHRYKVAKGGRGSGKSWAIARLLVEAARRQPVRILCARELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGIDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQRKFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPALVREETEIYVPSSSGW
332284..332586                     transposase; AD871_01785                                                             N/A                 Shigellaflexneri4cMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
complement(332589..332954)         PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; AD871_01790; phage(gi17546153)     8.44e-59            Shigellaflexneri4cMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
334309..335193                     PHAGE_Salmon_HK620_NC_002730: scaffold protein; AD871_01800; phage(gi13559868)       0.0                 Shigellaflexneri4cMENELIIDGQVIDLSETQENAEETIIQTESQPENESQDDNGKEVATEPEKTEETPEDYALRIGDEEIQLNADDDDHIDGQPAPQWVKDLRKGFKETQKENRELRRQLEEALAKPAEHQQPQPDAIPPKPTLESCDYDEQAFEQALTDWHEKKGRVEQQQQQKLRQQQEYQQRFQQRVEAHKQRAAKLPVKDYQEMEAIVLSELPPIQQEIIIHCADEGSELLAYGLGKSQQLRQRVAAETDPIRAAFLLGQISKQVSLAPKPKKAIKPEPEVRGGGADAKQDEFNKLCPGAKIE
335205..336476                     PHAGE_Salmon_HK620_NC_002730: capsid protein; AD871_01805; phage(gi13559869)         0.0                 Shigellaflexneri4cMPNNLDSNVSQIVLKKFLPGFMSDLVLAKTVDRQLLAGEINSSTGDSVSFKRPHQFSSLRTPTGDISGQNKNNLISGKATGRVGNYITVAVEYQQLEEAIKLNQLEEILAPVRQRIVTDLETELAHFMMNNGALSLGSPNTPITKWSDVAQTASFLKDLGVNEGENYAVMDPWSAQRLADAQTGLHASDQLVRTAWENAQIPTNFGGIRALMSNGLASRTQGAFGGTLTVKTQPTVTYNAVKDSYQFTVTLTGATASVTGFLKAGDQVKFTNTYWLQQQTKQALYNGATPISFTATVTADANSDSGGDVTVTLSGVPIYDTTNPQYNSVSRQVEAGDAVSVVGTASQTMKPNLFYNKFFCGLGSIPLPKLHSIDSAVATYEGFSIRVHKYADGDANVQKMRFDLLPAYVCFNPHMGGQFFGNP
336519..336704                     PHAGE_Salmon_HK620_NC_002730: hypothetical protein; AD871_01810; phage(gi13559870)     4.48e-38            Shigellaflexneri4cMDRMSVFLAADNESGHVQAVIAEKDFQFFEKLGFVASVDELKPTSKRGRKAADNGNSTDKG
336679..337161                     PHAGE_Salmon_HK620_NC_002730: DNA stabilization protein; AD871_01815; phage(gi13559871)     4.73e-114           Shigellaflexneri4cMATVLTKGEIVLFALRKFAIASNASLTDVEPQSIEDGVNDLEDMMSEWMINPGDIGYAFATGDEQPLPDDESGLPRKYKHAVGYQLLLRMLSDYSLEPTPQVLSNAQRSYDALMTDTLVVPSMRRRGDFPVGQGNKYDVFTSDRYYPGDLPLIDGDIPNA
337170..338588                     PHAGE_Salmon_HK620_NC_002730: DNA stabilization protein; AD871_01820; phage(gi13559872)     0.0                 Shigellaflexneri4cMPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLRSFPGIAKRSDVNGVSRGVEYNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIGSGQVSPIASASIEKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASLSANGPQWCVLKTGLYDDVYRAIDFIYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNVGFKLRVITKSPVTLSGCQIRIE
338588..339289                     PHAGE_Salmon_SE1_NC_011802: Gp26; AD871_01825; phage(gi219681250)                    3.54e-138           Shigellaflexneri4cMADSNLNVPVIIQATRLDTSVLPRNIFSQSYLLYVIAQGTDVGNVANKANEAGQGAYDAQVRNDEQDVILVDHEERIRQLRIEVDDHEIRIAANTAAIAALDVRLTTAEGEIVTLQADVSALDGRVTEAEGNISALQDDYVSKTATATQSLASPLNVTTSYSVGGTKVIGARQTGWTAATGTALLGAFNANQSYTVGTTYTQSEVAALATGLQQARQRILALETALRLHGLID
339289..339744                     PHAGE_Salmon_HK620_NC_002730: head assembly protein; AD871_01830; phage(gi13559874)     3.20e-109           Shigellaflexneri4cMITFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPDCRYFEVNVHGQFGGIVYYQEIQPLTFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHRR
339747..340439                     PHAGE_Salmon_HK620_NC_002730: DNA transfer protein; AD871_01835; phage(gi13559875)     2.46e-115           Shigellaflexneri4cMLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSQQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
340449..341744                     PHAGE_Entero_Sf101_NC_027398: DNA injection protein; AD871_01840; phage(gi849122274)     1.12e-175           Shigellaflexneri4cMATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEDQRNSIGTLAAGARLASSSPEAMQSWLQNNAKELTRVGVDPNSVAQMYQQNPSGFGEFVDHLGMAALGPIDYFNVQDKMAGREIDRGRLAETIRSNQAGEALTARGQDIQIRGQNISAQNAALSREIQRAELQEKALDRQIARESNQLKLEELKQKQADVRQKADIARADRQAAAQGAVDTFSTALDSLNEIEQSPGLSKAVGIRSAFPTVPGSDAANFEARLDTFKAQTFLPMVQSLKGMGALSDAEGKKLSDAVGALSPKMSEKAFRDSIGKIRNQLESKLSTVKKQFDYQEPVQNIPGQQSTTGSNFSSLWGD
341744..343741                     PHAGE_Shigel_Sf6_NC_005344: gene 13 protein; AD871_01845; phage(gi41057291)          0.0                 Shigellaflexneri4cMAKAWKDVIASPQYQALAPEQKAQAQEQYFNEVVAPQAGGNAEQAKQAFYAAYPLPSVQPVETQQPVAQQQPQQSGFMSDLGEAVKETGRGLVQAGVNVANIPASVADAVTSAAAWAGGKLGIGDGTYQPAPRVTTHGLEQDFGLQQGALTPQTTEGRVFAEALPYLTPAGVERAAAQAPTLAGRIAQGATRLLAENAVGSLAANSAKDDAEALATDLGVGVLAGGAINAAGRGLGAAYRGVRGAIAPEAQQAIRFAEREGVPLHTTDLLQPTSRVGKMAQTTAENIPLAGTSGMRATQQEARSQLVQRFADKFGEYDPAVVIDSLKAKTSGIRRAAGNRLEQVQNAMAGVNIQPARAIQQIDTEISNLQKLGKVADNETISKLQSYRDELVRNAGPEGPVNLDLKQLSDLRSQFRMDVKGERPVLPNRSDAAIQRVYKAMTDDINGAIGQNLGNDTLRKYQQANAVYADEAAKLKNTRLKNVLMKGDLTPEVVNNMLFSKNKSEIKTLYNSVGRVGRVQMRNGIIGKAMEKSGGSPDQFLRQLNILQNQTGITFKGQDAAYLKGLKNYLQSTQQAAKAAVTTPTGQQTIPFIIGYGTAMNPATTGAAVSYGLLTRAYESEPFRNAMLRMANTPRGSTAFEKAMQQAQKAINALTQGAKSDALSE
complement(343831..344091)         PHAGE_Entero_Sf101_NC_027398: putative chromosome segregation ATPase; AD871_01850; phage(gi849122276)     8.38e-52            Shigellaflexneri4cMYSKYDEAQFHLRLPHELHAKIKQRAKMNNRSLNSEIIAAIEESLDKQNSASVYIDDAERMAEQQSDMVKKIVFDTLKKIYKKDSR
complement(344223..344723)         PHAGE_Entero_HK022_NC_002166: putative endonuclease; AD871_01855; phage(gi19343390)     1.84e-32            Shigellaflexneri4cMSKRRHEVVTRERLMEVLDYNKETGIFTWKKKLSARGAVGKVAGTISYGYNAINIDGVRYFAHRLAWLYVYGEWPKQEIDHIDRNRRNNAISNLRDVSRVVNALNVGPRNSNAGIKGVTFCQARNQWQAQINVSGKNITLGRFNTIDEAAIAYKAANMVADHLLSR
345835..346458                     PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; AD871_01865; phage(gi849122277)     4.76e-103           Shigellaflexneri4cMVLNNPYFEANAGGADLAIDNTGTRPVTVVINGGNFHRVSSARYTHTNIQVTSSGGGKVTVILNGTTFQSAGDYQPSAERPYWITGANCEVVDIGCVFTETTSKVTSASALSVTRSGKINANGSIDVATGVSSVNVVSTGVYDVSFSHPLAAVASGYIVQITPISAPDSVSCDVTYIGVDTFRVTLRNTLSGAGISSSFAFSITRLL
complement(346525..347790)         PHAGE_Entero_SfV_NC_003444: serotype-specific glucosyl transferase; AD871_01870; phage(gi19549011)     7.20e-67            Shigellaflexneri4cMKIFIMRNWHKISIFILAFTLIWLRRIDILTNAQFWAEDAVFWYKDAYEQGFFSSLITPRNGYFQTVSTLIVGATTFINPIYAPLLSNFFGIIIRAIIIWFLFTDRFKFLSTTSKIFISVYLICMPGLDEVQANITNAHWYLSLYVAMIIISEESKSKLWKAHDLFFIVLSGLSGPFIIFIIASSVFKYLHLSKGVISIRGLYLFYTRLPYLAMILCGLIQATSIILTFNGTRSHAPLGFSFDVMSSIISSNVFLFSFVPWNIANAGWDNHLLSYTLSTLVITLCVFIYIKGNWQMKVFATLPILIVAFSMAKPQLADSVPQLPTLATGNGSRYFVNIHIAIFSLICVCLFQCIKNKTLKIFFKIYVSVILIAMIKLNFFITPLPDMNWSQGAELINKAKHGEAVSFTVLPPWLTLDLIKK
complement(347803..348720)         PHAGE_Entero_SfI_NC_027339: bactoprenol glucosyl transferase; AD871_01875; phage(gi849250309)     0.0                 Shigellaflexneri4cMKISLVVPVFNEEEAIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHTTGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGILSWVGGQTDVVEYVRTERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISFLYGAWMIIDTIVFGNPVRGYPSMLVSILFLGGVQLIGIGVLGEYIGRIYLETKSRPRYLIKSRK
complement(348717..349079)         PHAGE_Entero_SfV_NC_003444: putative flippase; AD871_01880; phage(gi19549013)        1.23e-74            Shigellaflexneri4cMLKLFAKYTSIGVLNTLIHWVVFGVCIYAAHTNQAMANFAGFVVAVSFSFFANAKFTFKASTTTMRYMLYVGFMGTLSATVGWVADRCSLPPIVTLVTFSAISLVCGFVYSKFIVFRDAK
349369..349432                     attR                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAGTTAC
complement(349429..349893)         PHAGE_Shigel_SfII_NC_021857: integrase; AD871_01885; phage(gi526244664)              8.72e-105           Shigellaflexneri4cMPVHLKESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDLILNPSVPNLSQSRNKEGTNDV
complement(349920..350738)         PROPHAGE_Escher_CFT073: transposase insF; AD871_01890; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(350774..351118)         PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_01895; phage(gi21231087)            3.09e-11            Shigellaflexneri4cMIWQPEFTDKTLSRKPGAVQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
complement(351102..351620)         PROPHAGE_Escher_CFT073: transposase IS629; AD871_01900; phage(gi26250986)            3.70e-121           Shigellaflexneri4cMAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSQAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(351632..351985)         PROPHAGE_Escher_CFT073: transposase; AD871_01905; phage(gi26249430)                  1.12e-44            Shigellaflexneri4cMPLLDKLREQYRVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
complement(351985..352311)         PHAGE_Stx2_c_1717_NC_011357: putative transposase; AD871_01910; phage(gi209447180)     4.72e-66            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGDDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKK
352462..353577                     PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; AD871_01915; phage(gi100150)     7.46e-25            Shigellaflexneri4cMFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMILCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA
360291..360302                     attR                                                                                 N/A                 CATCCGGCAATA

#### region 3 ####
complement(714737..715246)         PHAGE_Pseudo_MP22_NC_009818: transposase A; AD871_03815; phage(gi157834977)          7.00e-06            Shigellaflexneri4cMKSANEINQWMTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQEGRRGPGVEYIPAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSGLMQERPSISVDTLLATLGIDRQTLQTALALHKLPPETRQEILSMYGVHKQEEPVAPLLEPQDAKKAV
715629..717263                     PHAGE_Entero_SfMu_NC_027382: transposase; AD871_03820; phage(gi849255233)            0.0                 Shigellaflexneri4cMREWISAIECMGLSGLPGSLMGVHKRAQREGWLKRRREGIRGVAYEYHISSLPNIARAEVLLQQGKFKTSQGCFEIARPTLEAHDYDREALWSKWDKASDSQRSLAEKWLPSIQATDEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHALMHLIPAQQRTVEHLDAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYSIPEDFHITIDNTRGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAFGVGGLEEYVDKHPALAGAYTGPNPQAKPDNYGDHAVDAELFLKTFAEGVAMFNARTGRETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAKNVYYNMALMNAGVKKVVVRFDPQQLHSTVY
717325..717627                     PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_03825; phage(gi21231087)            2.08e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
717663..718481                     PROPHAGE_Escher_CFT073: transposase insF; AD871_03830; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(718478..718723)         PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; AD871_03835; phage(gi966201425)     7.28e-17            Shigellaflexneri4cMAKNDAVIHVHTPFVLTLPDGSRREFVKGRHVVEEDVATHWFTRAHAEVSVGKATDARNEVKNAKELRCTGNSGHYHLFFF
complement(718765..719706)         PHAGE_Vibrio_CP_T1_NC_019457: putative major capsid protein; AD871_03840; phage(gi418489228)     1.38e-14            Shigellaflexneri4cMITFDQATVDSSGAFLIGELERLDQTLNLPLVGYTWSRDIQLREDASIADDISSWTNTSFAAAGTGANPNGKNWVGKDSTAIAGVNVDIGKSGNPLNLWGMELGWTVIELQAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYVGDSALNLKGLVTLDGVPVNNAAKTWATSTPDEIRASINQVLSDAWAASGYSVVPRDLLIPPEQFALLSSIIVSSAGNQSLLTNLQTNTISYHQNGVPLNIRAVKWLKGRGVGNKDRIVAYTNDKKYVRYPLVPLQSVPVQYRGLYQIVTYYGKLGAVEPVYKETISYVDGI
complement(719851..720207)         PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; AD871_03845; phage(gi966201423)     3.94e-65            Shigellaflexneri4cMNNVFLYRMPVGIAGAVSRPQDLTVEPVVLKSDNAFAAYGLAGKYDDDGFFVPLADGDTADKVKGIYVRPYPTTSQPDMVRQVGTGKNFPGDAMKRGYVTVNLGSDFDASTIKKGDLH
complement(720211..721431)         PHAGE_Iodoba_phiPLPE_NC_011142: gp27 putative head protein; AD871_03850; phage(gi197085641)     4.97e-20            Shigellaflexneri4cMKYFFETRLGETRYRLADGSLLCKDVPIGRTGKQLYGADDLPKLKPDKFVEIVVTRSPEQVFHPATLASFEGMSITILHPEDENGNVRLVNPENWKVLAVGHLQNVRRGTGEQSDLMLADLIVKDESAIQLIEDGLREVSCGYDAEYEQTEPGKAEQVDITGNHVALVPKGRAGNRCAIGDRDTMANQKKNWWNRMRAAIKTGDADTMNELVESAPASVTGDEGDLPQGVNLNINLSPQQPLPDKAPEMGGDPTGDSDDDLKTLLKALLAKLERNATGDNDNKPDDNPTGDGEDDEEETTITGDSAWRAEVIVPGIDLSRKMKPTAFKREVLASADKTLVRQIVGDADIRKLPKQSVDMAFNAVSEVAKGRNTRATTGDAQRLNMGMTSIASLNKQNAEFWANRKG
complement(721435..722052)         PHAGE_Salmon_SEN34_NC_028699: putative head morphogenesis protein; AD871_03855; phage(gi966201421)     1.23e-120           Shigellaflexneri4cMAALERYSEIITPWATKVAENFTADLTRQNEKVWRQHSKNISRELRNLVESAPVGQVMQSIIAEQVKYIKSLPLEAADRVYDIQNKAIEAVVTGGRAEQFAKEIASTGDVAKSRADLIARTELGRATGALDMARAIAIGSDGYIWRTADDGDVRDSHDHMKGKFVRWDSPPTLDGMTGHAGELPNCRCYKEIVFVRVPFAMKRAA
complement(722069..723535)         PHAGE_Salmon_SEN34_NC_028699: putative portal protein; AD871_03860; phage(gi966201420)     0.0                 Shigellaflexneri4cMARNKQALRRTVQATADGYENFIARVGMQTPNQHSASTYRANFTSRNRMLVEWSYRSSWIIGEAVDAIPDDMTRKGIRITSEIDAKDRGILESQLDELQIWDALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRPETIGKGKFKGILPLDRWMVDPALTRRIKDMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVERIWDRLTAFDSATVGAAQLVYKAHLRTYSVEKLRELIALGGPAYEALLKNIDLIRQFQSNEGMTLMDSRDKFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGDADLANYYDRISSLQERRLRLPVRRILDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRSTVALNTTNAISTAMGDGLMTLKAAMTDLRENSDVTGIGASITNEDIENAEDEAPPGIGEPDDEPQEPSGGNPVSNQPTQDSEGGRRHRKWSLRWFK
complement(723535..723768)         PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; AD871_03865; phage(gi764162249)     3.02e-25            Shigellaflexneri4cMDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLDIWEQLGRQA
complement(723756..724295)         PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; AD871_03870; phage(gi764162249)     1.42e-58            Shigellaflexneri4cMSGNIGANPAIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWWLTVSEIRLTPLTTENSILWMS
complement(724280..725185)         PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; AD871_03875; phage(gi24114950)     0.0                 Shigellaflexneri4cMDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(725143..725508)         PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; AD871_03880; phage(gi17546153)     8.44e-59            Shigellaflexneri4cMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
complement(726218..726982)         PHAGE_Entero_933W_NC_000924: putative small subunit terminase; AD871_03890; phage(gi9632516)     9.16e-18            Shigellaflexneri4cMAKPDWEAIESAYRAGVLSLRDIGEKYGVTEGAIRKRAKKLDWARSGGTQVCKNGTQKRKVRTSRKPAITGLTQKSTQLKTESTPDTKPIRGMRTDPPTNPFQPGNQQALKHGGYARRLLLKDEVIEDAKALTLEDELFRLRANNLVAAENIGRWLVSLEDANGDQERKMLIENISAAEKAMMRNTVRIESIVGTLATVGKIFADTAYRKAATDKVSLEADRLRRDAGIDDGNGERDLNDFYSDIQTDAESGFT
727180..727689                     SNARE associated protein; AD871_03895                                                N/A                 Shigellaflexneri4cMEWINALMNYFVLHPYRLWGLLFIIAFTKSTLLISAILPPASIMMATVITVSKTTLSPWEAGITVMSGAWCGTIVNYHLGIIIGHIPQLACIISSRSNTIERVRLQLQNNSVSILFTSRFIAVLRYIAPLVAGMLQLHPVKVYTVSLISAASWSALYVGSFSFVLPFFS
728096..728398                     PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_03905; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
728587..729264                     PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_03910; phage(gi41057343)     4.06e-169           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNELENRYWKNSNSVASFC
729221..729715                     hypothetical protein; AD871_03915                                                    N/A                 Shigellaflexneri4cMDTGKTLTRWPVFVDHFSGGKTGNMFNLMLTSKKLTKTAINEALRRMKKAGLNKSELEAFLRDMINGKQKSWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKCKMAELLNDAHPKWSLRTCERRIEHWLKVAEFILYKPMVMAFGIEKKVIAF
729905..729981                     tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
729983..730059                     tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
730062..730136                     tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGCACCA
730140..730214                     tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(731027..731818)         PROPHAGE_Escher_CFT073: transposase insF; AD871_03945; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(731854..732156)         PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_03950; phage(gi21231087)            2.08e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
732432..734291                     PHAGE_Entero_Min27_NC_010237: putative replication protein P; AD871_03955; phage(gi170783639)     0.0                 Shigellaflexneri4cMRPSELSDLLWAQVDRVAPHLLPNGKIEGHEWVAGNVNGDKGNSLKVNLIGKKKWADFAEGDGGDMLDLWMACRGINLHQAMQEAKAFLGIKDDDHHFDARREKKFSRPDRKKIARYVTRTESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELDALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEIDCMSYAQYGISALSVPFGGGKGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTLPYKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINAFYGKQQYLFNPPWESLADKFQFREAELTLVNGVHGHGKACPLNEPILLADGTWTTHGNVKIGDQVASVDGNPSTVTGIFPQGVRDVYRVTFEDGRYVDCAGDHLWEVTSRGFTKGEKRRVIDTFGLKRLSETKRHKNGVRIPEITGDFGDHSEPLAWVIGSLLGDGSLSNGSVKFSNVEPYMIERMKAELPDYNFSGDGKDWLISTARGQVNPLMETLRGYGLMGCTAKNKFIPRVFFSANKSTRIGMLCGLLETDGYVEKDGTLVFSSASEELRNEVVNKNWPPS
complement(734266..734943)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_03960; phage(gi41057343)     3.62e-170           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(735132..735434)         PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_03965; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
735527..736405                     PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; AD871_03970; phage(gi18249882)     2.89e-179           Shigellaflexneri4cMMTFNLREQQKRLQARMDELRAEIAFAQKGEKPWPYRSCLMREGRGYCEKHGEYHTHILVWSDRNGEDREEISCCPDCLIAEANDLTMELSSIKAEELTDNAGIALRFRDCEFDNYLEVNPGAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHLAVAMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTADEVIERYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWAFISPRIADRITDGGRNWLSFNWPSYRSRIRGVAA
736402..737793                     PHAGE_Entero_phiP27_NC_003356: putative helicase; AD871_03975; phage(gi18249883)     0.0                 Shigellaflexneri4cMTTPVWRNDDLEGAVIGAFFLRGADPEVMDILATLPADVFSVRAYQDIYTGICRQARVSGVIDPVLLCNEMPELAPVITDTGRKTWVKSSLEHYVAALRRNAALRDAEKTLNEALQKLRDAHTCEAAEDALKDAQNMMVTLSTGKGVIQPVHIDDVLPEVVERVECRNQGLEKSRTLMTGIDELDAKTGGMEPGDLVFIAARPSMGKTELALDIIDKVTEQGHGVLLFTMEMANIQIGERMVSAAGGMPVSRLKSVAHFEDEDWTRFSQGVGRMTGRNIWMVDQANLAIDEICATTKHHLIKYPETALVVVDYLGLIKTRTTGRHDLAVGEISKGLKGLAKSGGFPLIALSQLSRGVESRPNKRPMNSDLKNSGEIEADADIILMLYRDEVYNPDTQARGIAEINITKQRNGSLGTIYRRFYNGHFLPVDQESARVLSTPMKPGNPRRYSNKRTDSSKMERFF
737805..738047                     PHAGE_Entero_phiP27_NC_003356: hypothetical protein; AD871_03980; phage(gi18249884)     4.45e-48            Shigellaflexneri4cMTFTPEQLRKHAQEMLRHAEQLEKTGITKDAIRKDMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEALR
738142..738342                     PHAGE_Shigel_Stx_NC_029120: NinH; AD871_03985; phage(gi985761277)                    1.41e-29            Shigellaflexneri4cMSVKIQTIPELLIQTRGNMTEVSRMLNCNRATVRKYAEDKEGKGHAIVDGVLIVHRGWDRGKDSDA
738335..738715                     PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; AD871_03990; phage(gi985761278)     1.41e-79            Shigellaflexneri4cMRDIQQVLERWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMVICGCMARLNRNNNDLHDLLVDYYVFGMTFMTLARKHGCSDGYIGKKLQKAEGVVEGMLMMLGVRLEMDKYIEHP
738915..738991                     tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
738993..739069                     tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
739072..739147                     tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
739151..739225                     tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
739518..739733                     PHAGE_Entero_VT2phi_272_NC_028656: holin; AD871_04015; phage(gi966197762)            4.19e-35            Shigellaflexneri4cMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVRPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
739752..740366                     PHAGE_Stx2_c_86_NC_008464: hypothetical protein; AD871_04020; phage(gi116221997)     1.53e-40            Shigellaflexneri4cMNQRFNHLENEITELNKKLSALVSSEDENKRRDEHYAAIYDYCHKVAHETFMKFLQEKFLPAALSEKEAAYLRPEYVITVNSAGEEEHKSDFIASAPDKDQEPHRPFRVSCEEGEFVVYENGKPVRASHHHCLKIINLAIRCLKDENTRVMKRIGRCMGYLQVAAEIEALASGADMDAAVREALLRDFNTPPLRKSLMTGSSRG
740432..740965                     PHAGE_Entero_mEp460_NC_019716: endolysin; AD871_04025; phage(gi428782372)            4.60e-127           Shigellaflexneri4cMSAKIKYGLSAAVLALIAAGASAPQILDQFLNEKEGNHTTAYRDGSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDVGRDCRIRSNNCYGQVIRRDQESALACWGIDQ
740962..741366                     PHAGE_Salmon_HK620_NC_002730: endopeptidase; AD871_04030; phage(gi13559860)          6.78e-90            Shigellaflexneri4cMSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGELKLANATITDMQQRQRDADALDAKYTKELADAKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDG
741428..741730                     PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_04035; phage(gi21231087)            1.46e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
741766..742584                     PROPHAGE_Escher_CFT073: transposase insF; AD871_04040; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
742612..742935                     PHAGE_Entero_N15_NC_001901: gp1; AD871_04045; phage(gi9630465)                       2.43e-23            Shigellaflexneri4cMPVHLKLLIARWELTAEQAVAQQLKNQVSKGNLIDTGFCIFALSKLAMALSSTLDSIPLSMQRQFPDLTPRHIDHLKILIAKGANQCARAGDKLPDLLDEYIRTTTE
742907..744817                     PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; large terminase subunit; Lambda gpA homolog; AD871_04050; phage(gi169257235)     0.0                 Shigellaflexneri4cMNISEQQLSNMMVAVTIALQPLVRVLPVTAVEWADQNYYLPKESSYGEGEWKTLQFQVAIMNCMGNDEIRTVNLIKSARVGYTKMVLGVIGYFIEHKSRNTLLFQPTDSAAEDFMKSHVEATIRDVPCLKKLSPWLGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKIKGSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDDATSFGLKWEKGKPETVYYLCEHNGCVIRQSELDQTGGRWICDNTGMWTCDGLTFFSASGNEIPPPRSITFHIWTAYSPFTTRVQIVCDWLDALKDPNGVKTFVNTTLGETWEEAVGEKLDHQVLMDKVVPYTATVPVRVVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDEEETLLRVDAAINKKYRHADGTEMTISRVCWDIGGIDGEIVYQRSKKHGIFRVLPVKGASVYGKPVITMPKTRNQRGVYLCEVGTDTAKEILYARMKADPTPVNEATSYAIRFPDNPEIFSQTEAQQLVAEELVEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQLDLAVQLHPARMQLHNRPLKNWQRSCPEE
744818..745021                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; AD871_04055; phage(gi169257234)     5.58e-18            Shigellaflexneri4cMVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLNELNRAINDAESVLGTTRRRRPLGVRL
745018..746073                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage portal protein; Lambda gpB homolog; AD871_04060; phage(gi169257233)     0.0                 Shigellaflexneri4cMKRTPVLIDVNGVPLRESLSYNGGGAGFGGQMAEWLPPAQSADAALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRLNWRWLGMRETTAKSFVGEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTETTQLFRTRFKAVSPKRVDTPGHGMGNHFLRAGVEVDRYGRAIAYHICEDDFPFSGAGRWERIPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERMKMLDSLQATQLQSAIVKAMYAATIESELDTEKAFEYIAGAPQGQQDNPLINILEKFTRWYDTNNVTLGGVKIPHLFSWRCAEPADSAGFRQWIFGA
745988..746611                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage portal protein; Lambda gpB homolog; AD871_04065; phage(gi169257233)     7.79e-117           Shigellaflexneri4cMLKFRTFFPGDALNLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSKVSYSSARASANESWRYFMGRRKFIAARLATQMFSCWLEEALLRGIIRPPRARFDFYQARSAWSRAEWISSGRMAIDGLKEVQESVMRIEAGLSTYEKELALMGEDYQDIFRQQVRESAEREKAGLSRPVWIAQAYQQQIAESRRPEEETTSRET
746601..748106                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage prohead protease; Lambda gpC homolog; AD871_04070; phage(gi169257232)     0.0                 Shigellaflexneri4cMRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQQQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATGAFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVDAVMGTEAAVFEGQSGIEAELADELINASDAISVMAATLNTHDTGGTMPQLTATEAAAQENQRVMGILTCQEAKGREQLATMLAGQQGMSVEQARAILAVAAPQQSGVSAQSEADRIMACEEAKGREQLAATLAAMPEMTVEKARPILAASPQANAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLAAASGRAEPVSASTTAMFEHFMANHSPAAVQGGVPQTSADGDADVKMLMAMP
748143..748490                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; AD871_04075; phage(gi169257231)     2.42e-54            Shigellaflexneri4cMVTKTITEQRAEVRIFAGNDPAHTATGCSGISSATPALTPLMLDEDTGKLVVWDGQKAGHVVGILVLPLEGTETVLTYYKSGTFATEAIHWPERVDTHKKANAFAGSALSHAALP
748548..749576                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; AD871_04080; phage(gi169257230)     0.0                 Shigellaflexneri4cMGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLNGPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGEQFETVEVDFGRSVGNNITQAGGTEWSAQDRDTFDPTHDLDAYCDFASGTINIAIMDGKVWRLLNGFKLFREKLDTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPDGTLVLGNTAAEGIRCYGAIQDAQALSEGVVASSRYPKHWLTVGDPAREFTMTQSAPLMVLPDPDEFVVVQVK
749628..750014                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; AD871_04085; phage(gi169257229)     3.14e-12            Shigellaflexneri4cMATKEENLKRLCELAERLGREPDVSGSAADIAQRVAELEEELGDAGEVAEPDTYSPSKDDPTAHKGESVPEQPGIVTGDETGQVTVVALATLHTKCNGSVIFVSPGTSFRVSAEVAASMAAGGLAKRQ
750026..750403                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; AD871_04090; phage(gi169257228)     4.39e-34            Shigellaflexneri4cMDGFDNLFDAALAGVNEVILRDMGISAVITSGELEGTHLTGVFDDPESISFVAGGIRLEDSSPCLFVKTADISQLRRQDTLTIGDDSFFVDRITPDDGGCCYIRLRRGSPAPQNNARMRRYDEGT
750390..750974                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-tail assembly protein; Lambda gpZ homolog; AD871_04095; phage(gi169257227)     3.38e-100           Shigellaflexneri4cMKGLENAIRNLNSLDTRMVPQTSAWAVNRVAAKIVSVATRQVAQNTVAGDNQVKGIPLKTVRERVRLLKASPSGKMYARMRVNRGNLPAIKLGTAQVRLARSRHGSNSRHRGSVLKVGKYLFRDAFIQQLANGRWHVMRRIDGKNRYPIDVVKIPMSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
750971..751372                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; AD871_04100; phage(gi169257225)     8.26e-65            Shigellaflexneri4cMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLIDTMIPLGFNYQRDNEMATWAMAEITYQITYTN
751383..752123                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major tail subunit; Lambda gpV homolog; AD871_04105; phage(gi169257224)     8.42e-106           Shigellaflexneri4cMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAP
752182..752568                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail assembly chaperone; Lambda gpG homolog; AD871_04110; phage(gi169257223)     3.09e-43            Shigellaflexneri4cMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
752577..752906                     PHAGE_Phage_Gifsy_1_NC_010392: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; AD871_04115; phage(gi169257222)     2.70e-42            Shigellaflexneri4cMQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
752878..755919                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; AD871_04120; phage(gi169257221)     0.0                 Shigellaflexneri4cMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVSSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVGQLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDTINQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETGKRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYPWTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNETEAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYSQQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKNELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGDKQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKRYWQELEVAQGDWKNGAMRAFQNFTADADNAAGTAEQMFTVAFSSAGNALATFCTTGKLNFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGLGMVMFAPQYNIEINNDGTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR
755919..756248                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tip assembly protein; Lambda gpM homolog; AD871_04125; phage(gi169257220)     7.35e-57            Shigellaflexneri4cMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTADFEQVVN
756248..756946                     PHAGE_Entero_lambda_NC_001416: tail component; AD871_04130; phage(gi9626261)         9.76e-157           Shigellaflexneri4cMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
756951..757694                     PHAGE_Entero_mEp460_NC_019716: tail fiber component; AD871_04135; phage(gi428782332)     2.54e-176           Shigellaflexneri4cMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
757691..758233                     PHAGE_Entero_mEp460_NC_019716: tail assembly protein; AD871_04140; phage(gi428782333)     1.04e-103           Shigellaflexneri4cMKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
758294..761773                     PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; AD871_04145; phage(gi148609400)     0.0                 Shigellaflexneri4cMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKSTAGISIS
761841..762440                     PHAGE_Entero_BP_4795_NC_004813: outer membrane protein Lom precursor; AD871_04150; phage(gi157166058)     1.74e-133           Shigellaflexneri4cMRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
763866..764489                     PHAGE_Escher_Av_05_NC_025830: tail fiber protein; AD871_04160; phage(gi730985066)     3.17e-43            Shigellaflexneri4cMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK
764489..764668                     PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; AD871_04165; phage(gi849255281)     9.25e-07            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(764669..766432)         PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; AD871_04170; phage(gi169257209)     2.72e-09            Shigellaflexneri4cMKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGAATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPPSLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPDLPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRLPELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
766542..766721                     PROPHAGE_Escher_CFT073: transposase; AD871_04175; phage(gi26246249)                  4.66e-07            Shigellaflexneri4cMWLAENEGVKFWLNVLTELKKRGWSPYLFIKPVVCPPQHHFSALIEILSMVVNSANPVR
complement(767015..767491)         kinase inhibitor; AD871_04180                                                        N/A                 Shigellaflexneri4cMKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDVERIDVDEGASGAMVGFNVHFHSLASASITAMFS
complement(767550..768782)         PHAGE_Mycoba_Alice_NC_028986: gp185; AD871_04185; phage(gi971763384)                 5.70e-06            Shigellaflexneri4cMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ

#### region 4 ####
998099..998110                     attL                                                                                 N/A                 TTCGCTGAAAAC
1000211..1001137                   PHAGE_Bacill_G_NC_023719: gp245; AD871_05310; phage(gi593777701)                     1.51e-29            Shigellaflexneri4cMIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSELGVHLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVVNTQGQPCGTLHFQDLLVEA
1001142..1001873                   osmoprotectant uptake system permease; AD871_05315                                   N/A                 Shigellaflexneri4cMKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIALILYGVLPILQVTLAGLGAIDPSVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQHAK
complement(1001854..1001961)       hypothetical protein; AD871_05320                                                    N/A                 Shigellaflexneri4cMRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG
complement(1002519..1003037)       PROPHAGE_Escher_CFT073: transposase IS629; AD871_05330; phage(gi26250986)            1.08e-121           Shigellaflexneri4cMAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKSEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(1003049..1003402)       PROPHAGE_Escher_CFT073: transposase; AD871_05335; phage(gi26249430)                  1.35e-43            Shigellaflexneri4cMPLLDKLREQYGGGPLCSELHIAPSTYYHCQQQRHHPDKCSARAQRDDWLKKEIQRVYDENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
complement(1003402..1003728)       PHAGE_Stx2_c_1717_NC_011357: putative transposase; AD871_05340; phage(gi209447180)     2.53e-65            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKK
complement(1003754..1003981)       transcriptional regulator; AD871_05345                                               N/A                 Shigellaflexneri4cMLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKILLSNENVDVQNVWRDQQETLLTYLQSVNRPGNPGD
complement(1004056..1004322)       PHAGE_Entero_phiP27_NC_003356: putative integrase; AD871_05350; phage(gi18249865)     8.19e-40            Shigellaflexneri4cMRESWTSILKRAGLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNRRLSESVPCMPHKKAG
complement(1004427..1004930)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_05355; phage(gi557307573)      1.54e-108           Shigellaflexneri4cMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKAIGHYLNIKHYQ
complement(1004849..1005073)       PHAGE_Entero_P1_NC_005856: InsA; AD871_05360; phage(gi46401643)                      4.71e-48            Shigellaflexneri4cMRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
1005166..1005579                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; AD871_05365; phage(gi849255282)     2.04e-28            Shigellaflexneri4cMAALPKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
1005582..1006127                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; AD871_05370; phage(gi18249919)     9.84e-95            Shigellaflexneri4cMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
1006151..1007566                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; AD871_05375; phage(gi18249920)     9.51e-116           Shigellaflexneri4cMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMAGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPGTPTGTYIVSPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
1007764..1008141                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; AD871_05380; phage(gi18249921)     3.14e-64            Shigellaflexneri4cMTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
1008141..1008320                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; AD871_05385; phage(gi849255281)     2.65e-06            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1008321..1009964)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; AD871_05390; phage(gi169257209)     2.91e-05            Shigellaflexneri4cMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(1010280..1010936)       methyltransferase; AD871_05395                                                       N/A                 Shigellaflexneri4cMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
1011005..1011274                   PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; AD871_05400; phage(gi428782810)     1.72e-25            Shigellaflexneri4cMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
complement(1011390..1011638)       PHAGE_Entero_cdtI_NC_009514: hypothetical protein; AD871_05405; phage(gi148609412)     2.53e-53            Shigellaflexneri4cMRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(1012036..1012674)       PROPHAGE_Escher_MG1655: IS4 transposase; AD871_05410; phage(gi16132099)              2.49e-148           Shigellaflexneri4cMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA
1013589..1015274                   PHAGE_Entero_YYZ_2008_NC_011356: putative 2-component sensor protein YehU; AD871_05415; phage(gi209427798)     0.0                 Shigellaflexneri4cMYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA
1015271..1015990                   two-component response-regulatory protein YehT; AD871_05420                          N/A                 Shigellaflexneri4cMIKVLIVDDEPLARENLRIFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
1016327..1016338                   attR                                                                                 N/A                 TTCGCTGAAAAC
1016600..1017103                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_05430; phage(gi557307573)      2.08e-110           Shigellaflexneri4cMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(1017324..1017785)       hypothetical protein; AD871_05435                                                    N/A                 Shigellaflexneri4cMKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKSTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK
1017927..1018151                   PHAGE_Entero_P1_NC_005856: InsA; AD871_05440; phage(gi46401643)                      4.71e-48            Shigellaflexneri4cMRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
1018070..1018573                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_05445; phage(gi557307573)      2.08e-110           Shigellaflexneri4cMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

#### region 5 ####
1133761..1133773                   attL                                                                                 N/A                 TTTATTCTTTTTT
1137753..1138427                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; AD871_06030; phage(gi209447151)     1.97e-09            Shigellaflexneri4cMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
1138424..1138774                   PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_06035; phage(gi209447152)            6.69e-34            Shigellaflexneri4cMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
1139766..1140131                   PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; AD871_06045; phage(gi17546153)     8.44e-59            Shigellaflexneri4cMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
1140089..1140994                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; AD871_06050; phage(gi24114950)     0.0                 Shigellaflexneri4cMDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
1141359..1141661                   PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_06055; phage(gi21231087)            1.46e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
1141697..1142515                   PROPHAGE_Escher_CFT073: transposase insF; AD871_06060; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHFRLGNISPAAFREKYHQMAA
1142598..1142975                   PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_06065; phage(gi209447153)            1.75e-48            Shigellaflexneri4cMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
1143044..1143358                   PHAGE_Stx2_c_1717_NC_011357: integrase; AD871_06070; phage(gi209447127)              1.07e-70            Shigellaflexneri4cMYNDVLFPGEDINKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTLVTRLSEMNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKLFWHIRSISD
complement(1143830..1145431)       PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_06080; phage(gi209447153)            0.0                 Shigellaflexneri4cMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKTHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHKLLPWNFSSVK
complement(1145428..1145664)       isocitrate lyase; AD871_06085                                                        N/A                 Shigellaflexneri4cMLFTSFSGSLVSRIPGAVQWADRDGLCLFAKRLAGDPGRESTPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
1145663..1145989                   PHAGE_Stx2_c_1717_NC_011357: putative transposase; AD871_06090; phage(gi209447180)     1.76e-64            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEFDRLWKK
1145989..1146342                   PROPHAGE_Escher_CFT073: transposase; AD871_06095; phage(gi26249430)                  2.10e-46            Shigellaflexneri4cMPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
1146354..1146872                   PROPHAGE_Escher_CFT073: transposase IS629; AD871_06100; phage(gi26250986)            1.56e-121           Shigellaflexneri4cMAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLMWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(1146875..1147087)       PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_06105; phage(gi209447152)            2.76e-26            Shigellaflexneri4cMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILCEPPRVSWRVFYL
complement(1147084..1147758)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; AD871_06110; phage(gi209447151)     1.97e-09            Shigellaflexneri4cMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
1147828..1148127                   membrane protein; AD871_06115                                                        N/A                 Shigellaflexneri4cMGRLRHFVLLNAQKLCDTQHMMQQILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLDNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK
1148299..1148628                   hypothetical protein; AD871_06120                                                    N/A                 Shigellaflexneri4cMETTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK
complement(1148729..1148911)       ethanolamine utilization protein; AD871_06125                                        N/A                 Shigellaflexneri4cMNHPVIGVVTKADLASMEQISLVKSWLREAGAHNVLVTSAVNNNGVTELFALLHTEEGCC
complement(1149489..1150007)       PHAGE_Stx2_c_1717_NC_011357: putative transposase OrfB; AD871_06135; phage(gi209447179)     1.92e-119           Shigellaflexneri4cMAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(1150019..1150372)       PROPHAGE_Escher_CFT073: transposase; AD871_06140; phage(gi26249430)                  7.75e-45            Shigellaflexneri4cMPLLDKLREQYGGGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
complement(1150372..1150698)       PHAGE_Stx2_c_1717_NC_011357: putative transposase; AD871_06145; phage(gi209447180)     2.53e-65            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKK
1150941..1151243                   PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_06150; phage(gi21231087)            1.46e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
1151279..1152097                   PROPHAGE_Escher_CFT073: transposase insF; AD871_06155; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1163104..1163116                   attR                                                                                 N/A                 TTTATTCTTTTTT

#### region 6 ####
complement(1163116..1163934)       PROPHAGE_Escher_CFT073: transposase insF; AD871_06235; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1163970..1164272)       PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; AD871_06240; phage(gi557307550)            1.47e-07            Shigellaflexneri4cMSRKTRRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
1164358..1164660                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_06245; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
1164849..1165526                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_06250; phage(gi41057343)     3.62e-170           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
1166152..1166454                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_06260; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
1166643..1167320                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_06265; phage(gi41057343)     2.59e-169           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERLFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(1168851..1168926)       tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
complement(1169027..1169824)       DgsA anti-repressor MtfA; AD871_06280                                                N/A                 Shigellaflexneri4cMIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVALAERFLQQKRLVPLQGFELNSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFISLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH
1169918..1170007                   tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGGAGTGGGGGCAACTCCACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
1169946..1169964                   attL                                                                                 N/A                 CGGTCTCGAAAACCGGAGT
complement(1170060..1171085)       PHAGE_Salmon_ST64B_NC_004313: Integrase protein; AD871_06290; phage(gi23505472)      7.15e-130           Shigellaflexneri4cMGRRRKNPEHEKLPPNVYPNKYSYVWKPTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK
1171252..1171668                   PHAGE_Escher_Av_05_NC_025830: hypothetical protein; AD871_06300; phage(gi730985110)     4.05e-32            Shigellaflexneri4cMTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN
complement(1172035..1172211)       PHAGE_Stx2_II_NC_004914: hypothetical protein; AD871_06305; phage(gi32171073)        1.37e-08            Shigellaflexneri4cMGLFSICLLVFMPETDSLKHPQSFYLTKISLQTVFVRHSKYPTKPIAFAVFTASIQCT
1172263..1172475                   PHAGE_Entero_933W_NC_000924: protein MokW; AD871_06310; phage(gi9632542)             5.12e-41            Shigellaflexneri4cMLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(1172517..1172702)       hypothetical protein; AD871_06315                                                    N/A                 Shigellaflexneri4cMPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQKKQNPPKRVKCGCVEDA
1172643..1172921                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; AD871_06320; phage(gi401817580)     3.41e-12            Shigellaflexneri4cMAHDTKFYNSDNSAAPASRHGRRSHAFKSDGYQHDPCTEEQAEWLIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR
1172923..1173981                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; AD871_06325; phage(gi557307571)     3.65e-110           Shigellaflexneri4cMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPPQEETVVSIAVDPESPAQYLQRQKPQREEMPVYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHNELHAGVKDFEEKHGSQLLLLIRFLMHARNSGVLKWKA
1173982..1174347                   PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; AD871_06330; phage(gi985761276)     2.35e-51            Shigellaflexneri4cMTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLNLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVRGQLVPGGRLGIKITELGCA
1174344..1175027                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; AD871_06335; phage(gi169257244)     4.55e-102           Shigellaflexneri4cMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGTSIPLVSPVEFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQIAITQWAWNEFNAQSGTRKIAGKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTRHWVAMKHIFHRLDSEALLFVMRTRSKKRRHFQSKVLQK
1175226..1175301                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
1175303..1175379                   tRNA                                                                                 N/A                 CCGCCACTAGCTCATCAGGAAAGAGCGTCAACCCTTTAAGTTGAGTGTGCGAGGTTCGAGTCCCCGGTGGCGGTCCA
1175382..1175457                   tRNA                                                                                 N/A                 GCCGACTTGGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
1175461..1175535                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
1175828..1176043                   PHAGE_Entero_VT2phi_272_NC_028656: holin; AD871_06360; phage(gi966197762)            4.88e-35            Shigellaflexneri4cMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGSLVLGFLTYLTNLYFKIREDKRKAARGE
1176142..1176816                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; AD871_06365; phage(gi209447151)     1.97e-09            Shigellaflexneri4cMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
1176813..1177163                   PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_06370; phage(gi209447152)            6.69e-34            Shigellaflexneri4cMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
1177160..1177684                   PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_06375; phage(gi209447153)            8.45e-21            Shigellaflexneri4cMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAGNAANLLI
1177764..1177988                   PHAGE_Entero_P1_NC_005856: InsA; AD871_06380; phage(gi46401643)                      4.71e-48            Shigellaflexneri4cMRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
1177907..1178410                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_06385; phage(gi557307573)      2.08e-110           Shigellaflexneri4cMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
1178576..1178758                   PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_06390; phage(gi209447153)            3.60e-15            Shigellaflexneri4cMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTLR
1178815..1179117                   PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_06395; phage(gi21231087)            1.46e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
1179153..1179971                   PROPHAGE_Escher_CFT073: transposase insF; AD871_06400; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1180365..1180526                   PHAGE_Entero_SfV_NC_003444: hypothetical protein; AD871_06410; phage(gi19549000)     3.79e-21            Shigellaflexneri4cMFVKPLKGRSVPDPARGDLLPSEGRNVEESSYWFRRIAAGDVVRVKQDKAKKS
1180523..1182019                   PHAGE_Shigel_SfIV_NC_022749: tail sheath protein; AD871_06415; phage(gi557307536)     0.0                 Shigellaflexneri4cMTISFNTVPSNTLVPLFYAEMNNSAANTAVTSAPALLIGHASNDAAIEVNSLVLMPSADYARQICGAGSQLARMVEVYRQTDPFGELYVIAVPEARGAAATVRVTVAGEAEESGTLSLYVGRSRVQVPVVNGDDATAVATAIKEAVNGVITLPFTASSDAGVVTLTARHKGLYGNELPVCLNYYGSGGGEILPAGLRVVTEVGAAGSGAPDLTAAVAAMGDEAFDFIGLPFNDAASINMMMTEMNDSSGRWSYARQLYGHVYTAKLGTLSELVGAGDMHNQQHITLAGYEKETQSPVDELVASRLAREAVFIRNDPARPTQTGELVGMLPAPKGKRFIMTEQQTLLSHGVATAYVEGGTLQIQRSVTTYKKNAYGVADNSYLDSETLHTSAYVLRKLKSVITSKYGRHKLANDGTRFGPGQAIVTPAVIKGELLATYRQMERAGIVEKYDLFKQYLIVERDADNPNRLNTLFPPDYVNQLRVFAVVNQFRLQYSEESA
1182019..1182375                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; AD871_06420; phage(gi557307537)     7.15e-70            Shigellaflexneri4cMAKIAGTCFFKVDGQQLSLTGGIEVPMNTNVRDDIVGMAGDVDYKETWRSPYVKGTFKVPKNFPVDKITTSDQMTITAELANGMVYVLSAAWLHGEANHNAEEGTADLEFHGEEGGYQ
1182381..1182710                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; AD871_06425; phage(gi557307538)     1.56e-50            Shigellaflexneri4cMNVTEIVLKKPVTAHNEMLHVLELREPTYDEIEALGFPFIISGEGSIKLDSQVALKYIPLLAGIPCSSAAQMAKLDIFKTSMQILRFFTQSETGSTSGNDSTMLPGSGN
1182795..1184744                   PHAGE_Shigel_SfIV_NC_022749: tail tape measure protein; AD871_06430; phage(gi557307539)     0.0                 Shigellaflexneri4cMADSFQLKAIITAVDKVSAPLKGMQRQLKGFKKEFASLSLGAAGAGTAVLGALALPVKSAIALESKMADVRKVVDGLDTPEAFKAMTEQVRDLSTELPMSAEGIAEIVAAGGQAGIARDELMQFTDDAVKMGVAFDTTAEESGQMMAQWRTAFKLTQGEVAGLADKINYLGNTGPASAKKISDVVTRIGPLGSVAGVASGEIAAMGATIAGMGVESEIAATGIKNFMLSLTARDSATKSQKKVLRSLRISPKKLAADMQKDARGAMLHVLDSLAKVPKEKQAAVLKALFGKESLGAIAPLLTNLDLLRTNFNRVADAQQYGGSMQKEYAARAATTENQLLLLQNQINAISSTLGETFLPSLNEGIKEMKPFLEEVRTFVRENPEVVKTIAKTGAALLTMGVAIGTLTRITKIMGSVMNMTPAKGLIALLVGGAYLIIDNWETVGPVVKKVWQEVDQVVRAMGGWEQAVKTIATVSALYIGVKAVASIRAATVAQNQWTTAAGKTGLKLKGLGKISLIGGLLELGMMAQEFEKEHPWLVKNFVADALNSGFGLNDKFDEWGKQFHDFVYDMTGWQMPRGDGYLSPDKRYTPNVSLERNQLLSLASSPATRSELKVTFDNAPPGMRVIDLPKTGDPFMKITHDVGYSPFKR
1184812..1185294                   hypothetical protein; AD871_06435                                                    N/A                 Shigellaflexneri4cMIKPFLMTVAILTSCCAQAKILTNEEIVSRFISNVKTSADNDVDLDTDGFRQLRISCPSPSASGAIILRKASYEFGKSIGVFDFANNASPATMTFLIPIYKDDDFDSDTVGFTFAFKMPRGQFFVDVKENGNIRAGVNVNGESGVTYENCKLNMKDINDD
complement(1185387..1185890)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_06440; phage(gi557307573)      2.08e-110           Shigellaflexneri4cMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(1185809..1186033)       PHAGE_Entero_P1_NC_005856: InsA; AD871_06445; phage(gi46401643)                      4.71e-48            Shigellaflexneri4cMRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
1186286..1186999                   PROPHAGE_Escher_CFT073: transposase insF; AD871_06450; phage(gi26249410)             2.08e-174           Shigellaflexneri4cMAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLGHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQIAA
1187154..1187519                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; AD871_06455; phage(gi730985066)     2.74e-16            Shigellaflexneri4cMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
1187519..1187698                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; AD871_06460; phage(gi849255281)     2.65e-06            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1187699..1189342)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; AD871_06465; phage(gi169257209)     2.91e-05            Shigellaflexneri4cMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(1189658..1190314)       methyltransferase; AD871_06470                                                       N/A                 Shigellaflexneri4cMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
1190383..1190652                   PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; AD871_06475; phage(gi428782810)     1.72e-25            Shigellaflexneri4cMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
1190999..1191017                   attR                                                                                 N/A                 CGGTCTCGAAAACCGGAGT

#### region 7 ####
complement(1288928..1289671)       PHAGE_Staphy_SPbeta_like_NC_029119: tRNA (cmo5U34)-methyltransferase; AD871_07105; phage(gi985761180)     1.00e-36            Shigellaflexneri4cMSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAEDAA
complement(1289712..1290107)       membrane protein; AD871_07110                                                        N/A                 Shigellaflexneri4cMVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAICIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWELVFSLR
1290740..1291042                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_07120; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
1291231..1291908                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_07125; phage(gi41057343)     3.62e-170           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(1291883..1292080)       PHAGE_Entero_phiP27_NC_003356: putative excisionase; AD871_07130; phage(gi18249866)     9.68e-34            Shigellaflexneri4cMGNVIQLAPNEWVCESVLIAITGLKPGTILRTRKECWMVGREYIHVSPDGNPKPSEVVNKNWPPS
complement(1292089..1292235)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; AD871_07135; phage(gi157165988)     2.12e-25            Shigellaflexneri4cMNKAFELWVHQRYGNHYDLTRDVDGFYCREIVKRMFEVWCHCRGLSVV
complement(1292239..1292481)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; AD871_07140; phage(gi157165989)     8.45e-44            Shigellaflexneri4cMFALIQRGQIYTDRAGYPVEITRSTEHSVFFRRMDGRTGRVRIGEFSSLFEHIDHLEYHKILAETEQEKHLKKLRAMQRK
complement(1292605..1293174)       PHAGE_Shewan_1/41_NC_025458: DNA polymerase III beta subunit; AD871_07145; phage(gi712915574)     3.99e-34            Shigellaflexneri4cMIIQSKLIRAALVCAAKNDVRYYLNGLHITPKHIEATNGSVALRMAHGIRTKKNIIVQFEGGVPAKAETTELIFSKEPIAVHRDQFQRRLSITGIKLVDGCFPDLDRIIPKKFDRCTHPVLQAGYLSYPEKMFGRERKFIPVQLRPSGDGQAVRIQFDSIINSMYGNPEFVVMPCRDHGDFNVAQEHPE
complement(1293171..1293920)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; AD871_07150; phage(gi18249878)     8.38e-70            Shigellaflexneri4cMNTVTINNKQFPVIEYRGQRVVTLAMIDEVHQRPEGTARAAFNRNREHFISGVDYAELGADVIRTDLPEGTFSKFAPSGIVLFESGYLMLTKPFNDALAWQVQRELVNSYFRTRTPLTEIEMIAAIAADAVRQQKRLNHVEEQLETVTEAVETIKRGNMRAGYVGYRQVVAKSGMSDTKCRNLVNAYQIPTDTHEFMTPDGLLSRRAIVELEPFMAAFHQMMSEADPRGTRWYHPKMGLFQVIGWEDKA
complement(1293964..1294791)       PHAGE_Entero_phiP27_NC_003356: putative serine protease; AD871_07155; phage(gi18249869)     0.0                 Shigellaflexneri4cMKKVIPALALVLLTTGLVGCDRVEPGNVGIKVNKLGDDKGVGEVVGVGRYWTGWNTEVYIFPTFKQMKTYDEPFSFQMSDGTTIGYHIGVAYKVDPSKVTTVFQTYRKGVDDITDTDLRQKIADALNRLASKMTTDKFIDGGKSELLDAALKDIQEEMTPIGIQVMSLSYVGKPEYPPTVIDSINAKVTANQKTLQCEQEVKQREAEANMLRAEAAGQADAIRTKAQAEADAIRLRGEALRQNPNVMELEAINKWNGTLPQYMTSGANTPFIQVK
complement(1294788..1294976)       PHAGE_Cronob_vB_CsaM_GAP31_NC_019400: hypothetical protein; AD871_07160; phage(gi414086809)     8.44e-05            Shigellaflexneri4cMNIYFRIVISLAIIACIYGLIVPALISMKDTVAVISGFALACLTPPCIYAIYKGLSFSKDKR
complement(1295289..1296107)       PROPHAGE_Escher_CFT073: transposase insF; AD871_07165; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1296143..1296268)       transposase; AD871_07170                                                             N/A                 Shigellaflexneri4cMAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
1296461..1296649                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; AD871_07175; phage(gi18249884)     7.14e-25            Shigellaflexneri4cMPFYFRKECPLNSGYLNMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEVLR
1296649..1297008                   PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; AD871_07180; phage(gi985761276)     1.93e-52            Shigellaflexneri4cMRHEFILPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLSLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDETNIVRGLPVPGGRLGIKITELECA
1297005..1297694                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; AD871_07185; phage(gi169257244)     1.34e-97            Shigellaflexneri4cMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGASIPLVSQVAFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQITITHWAWEEFKAHSGTRKIAEKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTGHWVVMKHIFHRLDSEALLFVMRTRSEQKAAFSKQSIAKVD
1297871..1297946                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
1297948..1298024                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTCCGAGGTTCGAGTCCTCGGTGGTGGGCCA
1298027..1298102                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
1298106..1298180                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(1298880..1300076)       PROPHAGE_Escher_CFT073: transposase; AD871_07210; phage(gi26248352)                  0.0                 Shigellaflexneri4cMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTFYTPQGS
1300340..1300741                   PHAGE_Entero_HK225_NC_019717: head assembly protein Fi; AD871_07215; phage(gi428782384)     6.05e-16            Shigellaflexneri4cMAKKDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELANMDDTDIRDKSAHPENALTGHENEVISAQPETVIQNMDDLVTVVALVTLHTDALHATRDEPLAFVPPGMAFRVFAGVAAGMTERGLARMQ
1300753..1301124                   PHAGE_Entero_lambda_NC_001416: head-tail joining protein; AD871_07220; phage(gi9626253)     1.11e-35            Shigellaflexneri4cMADFDNLFDVALDLADKAIIRNMGIRAVITSGRLKGIMISGVFDDPENISLVAGGVRIEDSLPSLFVKTADILRLCRNDSLMIGRESFCVDRITPDDGGCSYIRLRREGLPGNVRAGRYYEGA
1301111..1301701                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; AD871_07225; phage(gi428782324)     8.78e-104           Shigellaflexneri4cMKGLENAIRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNPPAIKLNTTRRRAGEGLRVGKYFFRGAFVQQLANGRWHVLRCLPEARFATGHDHQGRLRKNRLPVEVVKIPLSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
1301698..1302099                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; AD871_07230; phage(gi428782325)     1.24e-93            Shigellaflexneri4cMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFIRAQAPDSELDMWMESTIFPALNDVPALSGLIDTLNPLGFNYQRDNEMATWAMAEITYQITYTN
1302110..1302850                   PHAGE_Entero_mEp460_NC_019716: major tail protein; AD871_07235; phage(gi428782326)     1.34e-163           Shigellaflexneri4cMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAP
1302909..1303295                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; AD871_07240; phage(gi428782327)     3.56e-83            Shigellaflexneri4cMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
1303316..1303633                   PHAGE_Entero_mEp460_NC_019716: tail assembly protein; AD871_07245; phage(gi428782328)     2.97e-71            Shigellaflexneri4cMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
1303605..1306646                   PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; AD871_07250; phage(gi428782329)     0.0                 Shigellaflexneri4cMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVSSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVGQLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDTINQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETGKRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYPWTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNETEAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYSQQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKNELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGDKQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKRYWQELEVAQGDWKNGAMRAFQNFTADADNAAGTAEQMFTVAFSSAGNALATFCTTGKLNFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGLGMVMFAPQYNIEINNDGTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR
1306646..1306975                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; AD871_07255; phage(gi428782330)     1.28e-73            Shigellaflexneri4cMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTADFEQVVN
1306975..1307673                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; AD871_07260; phage(gi428782331)     2.09e-155           Shigellaflexneri4cMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
1307822..1308421                   PHAGE_Entero_mEp460_NC_019716: tail fiber component; AD871_07265; phage(gi428782332)     4.87e-144           Shigellaflexneri4cMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
1308418..1308960                   PHAGE_Entero_mEp460_NC_019716: tail assembly protein; AD871_07270; phage(gi428782333)     1.04e-103           Shigellaflexneri4cMKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
1309021..1312500                   PHAGE_Entero_mEp460_NC_019716: host specificity protein; AD871_07275; phage(gi428782334)     0.0                 Shigellaflexneri4cMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKSTAGISIS
1312568..1313167                   PHAGE_Entero_mEp460_NC_019716: Lom protein; AD871_07280; phage(gi428782335)          5.03e-132           Shigellaflexneri4cMRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
1314593..1315216                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; AD871_07290; phage(gi730985066)     3.17e-43            Shigellaflexneri4cMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK
1315216..1315395                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; AD871_07295; phage(gi849255281)     9.25e-07            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1315396..1317147)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; AD871_07300; phage(gi169257209)     6.61e-09            Shigellaflexneri4cMLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEEQRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLTQLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPELLETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLPENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(1317411..1317665)       hypothetical protein; AD871_07305                                                    N/A                 Shigellaflexneri4cMHTTCLRSQLRPPPPIMIGQYQYSTSKDRKLAVSAKHRPDGEKTKRYAKMPRFQKNKKPLMDSLLNTVFYIHDSLIPVALIAII
complement(1317747..1317995)       PHAGE_Entero_mEp460_NC_019716: DinI-like protein; AD871_07310; phage(gi428782337)     3.18e-53            Shigellaflexneri4cMRFEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
1318152..1318268                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; AD871_07315; phage(gi18249922)     4.45e-06            Shigellaflexneri4cMNFADFHMTWQSNALIILKKTHALGRSLVIFKNPVSRS
complement(1318724..1319920)       PROPHAGE_Escher_CFT073: transposase; AD871_07325; phage(gi26248352)                  0.0                 Shigellaflexneri4cMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTFYTPQGS

#### region 8 ####
complement(1654707..1655711)       PHAGE_Burkho_phi1026b_NC_005284: gp59; AD871_09185; phage(gi38707949)                1.42e-10            Shigellaflexneri4cMTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
1655965..1656090                   transposase; AD871_09190                                                             N/A                 Shigellaflexneri4cMAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
1656126..1656944                   PROPHAGE_Escher_CFT073: transposase insF; AD871_09195; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
1657271..1657510                   bifunctional antitoxin/transcriptional repressor RelB; AD871_09200                   N/A                 Shigellaflexneri4cMGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
1657510..1657797                   RelE toxin; AD871_09205                                                              N/A                 Shigellaflexneri4cMAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
1657869..1658024                   PHAGE_Entero_933W_NC_000924: host killer protein; AD871_09210; phage(gi9632541)      1.00e-25            Shigellaflexneri4cMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
1658242..1658493                   hypothetical protein; AD871_09215                                                    N/A                 Shigellaflexneri4cMMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALINFVDARVTDGFILRDGEFVTSLQALKEIGIKAGFSAFSEE
1658840..1659889                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; AD871_09225; phage(gi428782365)     2.08e-135           Shigellaflexneri4cMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPQQEKTVVSIAVDPESPESFMKRPKRRRWVNEKYKRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLIFRFLDHAFATGVLG
1659902..1660258                   PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; AD871_09230; phage(gi985761276)     2.55e-46            Shigellaflexneri4cMLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQRLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQPVSGGRLGVKIYPIMH
1660273..1661094                   PHAGE_Entero_HK225_NC_019717: late gene regulator Q; AD871_09235; phage(gi428782441)     1.60e-111           Shigellaflexneri4cMKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCCYGEKFIESIVFTNKIQYPDGKPPVWAKCTKGVYPFYWEEWKKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGYERLPSTEAFNAICEVTNQITRASWEKTVKKFYDALVTRFDIEEAWAERQLKKVTR
1661239..1661314                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
1661416..1661492                   tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAGCGCGCCA
1661630..1661956                   hypothetical protein; AD871_09250                                                    N/A                 Shigellaflexneri4cMVFSALSIYHSYGVGRVNIDEASGCFILRQRIDIVNAARAKAFSRLTVLFCTPDRLSGRDVIILNSDAIQRVCDEFMVANSELFALVQEYNRIARTCGMDELRITHLG
complement(1662404..1662739)       PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; AD871_09260; phage(gi209447168)     2.29e-54            Shigellaflexneri4cMKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFTLTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQICPYGLKQQSP
1662999..1663187                   PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; AD871_09265; phage(gi209427766)     7.99e-34            Shigellaflexneri4cMAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAITPYTLMQAIAAEGDVVVSGATEPE
1663495..1663674                   PHAGE_Entero_933W_NC_000924: protein S; AD871_09270; phage(gi9632510)                9.81e-32            Shigellaflexneri4cMDQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGSLLFGLLTYLTEVYWQ
complement(1663699..1664412)       PROPHAGE_Escher_CFT073: transposase insF; AD871_09275; phage(gi26249410)             4.93e-176           Shigellaflexneri4cMAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1664595..1664990)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_09280; phage(gi557307573)      3.37e-85            Shigellaflexneri4cMIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(1665017..1665241)       PHAGE_Entero_P1_NC_005856: InsA; AD871_09285; phage(gi46401643)                      4.71e-48            Shigellaflexneri4cMRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR

#### region 9 ####
1810971..1810983                   attL                                                                                 N/A                 TGCTCTATCCGGA
complement(1813760..1813921)       PHAGE_Salmon_SP_058_NC_021772: NinI protein; AD871_10125; phage(gi526003485)         5.39e-13            Shigellaflexneri4cMHQVLWSRSRLGERPKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGG
complement(1813992..1814810)       PROPHAGE_Escher_CFT073: transposase insF; AD871_10130; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHYSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1814846..1815148)       PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_10135; phage(gi21231087)            2.08e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
complement(1815939..1816334)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_10145; phage(gi557307573)      2.46e-86            Shigellaflexneri4cMIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(1816361..1816585)       PHAGE_Entero_P1_NC_005856: InsA; AD871_10150; phage(gi46401643)                      4.71e-48            Shigellaflexneri4cMRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
1817187..1818893                   E3 ubiquitin--protein ligase; AD871_10155                                            N/A                 Shigellaflexneri4cMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSTSAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(1818894..1819073)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; AD871_10160; phage(gi849255281)     6.52e-08            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRPPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1819073..1819696)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; AD871_10165; phage(gi730985066)     1.24e-41            Shigellaflexneri4cMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKPLTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
complement(1819585..1820196)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; AD871_10170; phage(gi157166064)     3.13e-08            Shigellaflexneri4cMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDIRDFSAQYSHRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCSCLWRNARAFYSHIVRNAPWKLKKSLIPVIPKVAQ
1820553..1820849                   hypothetical protein; AD871_10175                                                    N/A                 Shigellaflexneri4cMSFRIFIAFLDRERLQYRYCSLRKTFWTKIHGNLARASIALSGIHNRSSNQLARFAVFTLELKLFYLREFCFERSLIAFRDCQLINEMTNIQAECLTT
1822305..1822715                   PROPHAGE_Escher_CFT073: transposase insC; AD871_10185; phage(gi26249447)             5.45e-67            Shigellaflexneri4cMIVLIPVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
1822739..1823578                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; AD871_10190; phage(gi24114950)     0.0                 Shigellaflexneri4cMSRAQLHVILRRTDDWMDGRRSRHTDYTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
1823655..1823876                   PHAGE_Shigel_Stx_NC_029120: Kil protein; AD871_10195; phage(gi985761255)             1.80e-46            Shigellaflexneri4cMIAHHFGTDEIPRQCVTPGDYILHEGRTYIASANNIKKRKLYIRSLTTKTCISDCMIKVFLGRDGLPVKAESW
1823870..1824046                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; AD871_10200; phage(gi169257260)     7.79e-07            Shigellaflexneri4cMVMTKKIKCAYHLCNKEIEESKIITRPLHFMRGVIPTTEMKKYCSEICAEKDQMAHEL
1824121..1824396                   hypothetical protein; AD871_10205                                                    N/A                 Shigellaflexneri4cMITSYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLNDGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
complement(1825968..1826786)       PROPHAGE_Escher_CFT073: transposase insF; AD871_10215; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSCKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1826822..1826947)       transposase; AD871_10220                                                             N/A                 Shigellaflexneri4cMAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
1827223..1827483                   PHAGE_Entero_BP_4795_NC_004813: putative host-nuclease inhibitor protein Gam; AD871_10225; phage(gi157165999)     1.18e-49            Shigellaflexneri4cMAWARHYQQIVREEKETELADDLEKGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMAETIAHHQVDIDLED
1827489..1828586                   PHAGE_Gordon_BritBrat_NC_030942: prohead core protein protease; AD871_10230; phage(gi100061)     9.77e-16            Shigellaflexneri4cMALFQRAINTQAYLKAGIMGFAGDGKTYTASELAIGLVMLMRQRGIEAGNRPVMFLDTETGSDWVKPRFDAENIELFTAKTRSFVDLLEAINEAESSGSVMIIDSISHFWTGLCDEYARRRNRKRGLEFSDWAWLKQEWRRFTDRFVNSQAHIIMCGRAGYEYDFFEGDDGKRQLAKTGIKMKAETETGYEPSIRIQMEKQMNIETGQVWRTARILKDRSTRIDGQVFSNPTFKNFLPHIESLNLGGEHPGIDTSRDNSELFANDGTPTWLKEKRAKEIALDEIIELLNKHHGGTSNDAKRAKADLLEKTFTSRSWERIKGMDWPTIKAGRNALWIELEGVEYAFPDPQTQNETQQAGYDENIPV
1828661..1828987                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; AD871_10235; phage(gi157166066)     1.14e-73            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
1828987..1829340                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; AD871_10240; phage(gi157166067)     1.23e-43            Shigellaflexneri4cMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
1829352..1829870                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; AD871_10245; phage(gi157166067)     1.67e-121           Shigellaflexneri4cMAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
1829918..1830085                   hypothetical protein; AD871_10250                                                    N/A                 Shigellaflexneri4cMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYNYPKINQFIKDS
1831526..1831666                   PHAGE_Entero_BP_4795_NC_004813: putative integrase; AD871_10260; phage(gi157165986)     5.16e-16            Shigellaflexneri4cMTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS
1832098..1833012                   iron ABC transporter substrate-binding protein; AD871_10265                          N/A                 Shigellaflexneri4cMHSIKKVTMLLGCLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNGVPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKAKITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYIDLLKVTTSTLVQGIKAGKREK
1833012..1833839                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; AD871_10270; phage(gi371496158)      8.48e-14            Shigellaflexneri4cMMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGSGKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQGDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR
1844700..1844712                   attR                                                                                 N/A                 TGCTCTATCCGGA

#### region 10 ####
1823706..1823717                   attL                                                                                 N/A                 CCTGGCGATTAT
complement(1835748..1836371)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; AD871_10285; phage(gi730985066)     6.92e-41            Shigellaflexneri4cMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKLFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQRELKEELNSLKDLNSVRNFIVE
complement(1836322..1837542)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; AD871_10290; phage(gi18249920)     4.77e-98            Shigellaflexneri4cMSGYHIILKSRVNPPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTDWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
complement(1837614..1837985)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; AD871_10295; phage(gi18249919)     3.74e-69            Shigellaflexneri4cMVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
complement(1838182..1838448)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; AD871_10300; phage(gi849255282)     4.00e-24            Shigellaflexneri4cMFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGT
complement(1838578..1839396)       PROPHAGE_Escher_CFT073: transposase insF; AD871_10305; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
complement(1839499..1840002)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_10310; phage(gi557307573)      1.81e-109           Shigellaflexneri4cMSCQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(1840225..1840407)       PHAGE_Escher_bV_EcoS_AKS96_NC_024789: regulatory protein; AD871_10315; phage(gi682123765)     1.88e-09            Shigellaflexneri4cMSQQPQQPQQEISIINLDQLVSMTSVEIAELTGKEHRNVLRDIRKMLEELNAGNAANLLI
complement(1840785..1841462)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_10320; phage(gi41057343)     3.62e-170           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(1841651..1841953)       PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_10325; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
complement(1842775..1844229)       PROPHAGE_Escher_Sakai: putative integrase; AD871_10330; phage(gi15834496)            5.63e-22            Shigellaflexneri4cMAYSRHIKAALKAIHADRPNATYEEMREHLKDIAECELSMGRSDLFEPDMRDIYRDQYGELGESLTDALASEPLSIDQHRYINEALKVLKACMRRIEAGDSQPLIDYVDLFNDIDRQDNQADSVSLSVNAPEVKPEVTPSITIASLFEQYEAENYQNWKPATLRENKASHAALIEIFDHLGLNADANRADMLRVRDVLQQLPRNRKQRFKDVPLADLLSREDKTDCLDVVTINNKYLIKMAAVFRWAVRNDLIKKNMTEGLELKVPQRKASGARNAFSTEQVGQLLVAAKAYSQKTSGKPYHYYVTALAAITGARLNEIAQLQVKDVRTTEAGTVYIHINEDDSSLPGKSIKNAHSDRCVPLVDGAYGFILADFMALVETRRGADGDDAMVFDGLRLMKNGYGEQVSKWFNRTLLPKVLVDRSGLAFHSFRHTVAAQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVDRLVNVMADVYKET
complement(1844494..1844568)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(1844572..1844647)       tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
complement(1844650..1844726)       tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
complement(1844728..1844804)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
1844758..1844769                   attR                                                                                 N/A                 CCTGGCGATTAT
complement(1845013..1845519)       PHAGE_Entero_VT2_Sakai_NC_000902: similar to antirepressor of bacteriophage P22; AD871_10355; phage(gi9633431)     1.76e-61            Shigellaflexneri4cMPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGKHFFKVVGNDLKELRVALNYSQNPVSPKARSLILWTERGAARHGKMLETDQAWDVFEKLEDCYFSQRDPSTPVSCQKSYDTRVLCYQRGGVTVSTIQLRDDDIVISLESWLELARANGWFVVRRDKLVERLMQL
complement(1845566..1846384)       PROPHAGE_Escher_CFT073: transposase insF; AD871_10360; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1846767..1846952)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; AD871_10365; phage(gi100057)     2.85e-07            Shigellaflexneri4cMAGCVGEPKGSPVSVPGYANPAQFATSSIGVVGGDNFQMYGVIVMTTQISVETLSPITHNQ
complement(1847093..1847647)       hypothetical protein; AD871_10370                                                    N/A                 Shigellaflexneri4cMIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAVNEALRRMKKAGIEKPELEAFLREMINGKQKTWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKRKMAELLNDAHPEWCFRTCCSRVDVWLNLAEYMLYLPMRDAFSSGDLKTVC
complement(1847644..1847934)       PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; AD871_10375; phage(gi327198620)     1.03e-41            Shigellaflexneri4cMVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL
complement(1847934..1848533)       PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; AD871_10380; phage(gi423262437)     5.26e-69            Shigellaflexneri4cMAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSDAAEQYLNTVATCRTRDTALLKSFDAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDETEFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
1848718..1848942                   PHAGE_Entero_P1_NC_005856: InsA; AD871_10385; phage(gi46401643)                      4.71e-48            Shigellaflexneri4cMRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
1848969..1849364                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_10390; phage(gi557307573)      1.16e-84            Shigellaflexneri4cMIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKAIGHYLNIKHYQ
complement(1849382..1849633)       PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; AD871_10395; phage(gi423262436)     2.22e-06            Shigellaflexneri4cMDITVCTYKPGGIVEKIKKLFSSKYAVIRRDDLSVIVEMDYFPETPKSIMYRNGRKAIFLPMRVSDIMGNDKLLDELRVRASC
complement(1849870..1850082)       PHAGE_Entero_933W_NC_000924: protein MokW; AD871_10400; phage(gi9632542)             1.91e-38            Shigellaflexneri4cMSHKCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(1850480..1850845)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; AD871_10410; phage(gi116222036)     1.90e-39            Shigellaflexneri4cMINRTKLEHILEYARQQKCIGQLCKIPPGDMVEIVEMAMRKAGNSPVTLAGWISCSDAVPAEYCDVILLDDLGNVFPGSWDKVFCPTRGGNKMAFVDKDGVEVESSTHWMPLPEPPQEVNQ
complement(1850845..1851510)       PHAGE_Salmon_SPN3UB_NC_019545: putative Eaa protein; AD871_10415; phage(gi423262432)     5.10e-07            Shigellaflexneri4cMTTITKERLQWLANISGRDDIDDIDGGEIRELALIALASLEAEPVAECIVEDGGMCIDGFGEYVGHSLPDGMHELYAAPRMRQPDGWKAVAVAWKVTFTQVDQESNTFTAIYFYKAEVERWVRLHKACDFRADITPLYAAPAVPVAVNDDMAYAFHHALSDSSLGSDEIEEIKTGLRAAFANVTIQPEPIVPDEIGPNDSNTFDYVDGWNACRAAMLKGDK
complement(1851507..1851872)       PHAGE_Entero_HK225_NC_019717: HNH endonuclease; AD871_10420; phage(gi428782431)      2.63e-43            Shigellaflexneri4cMALTKKQRAELRMKFGGRCAYCGCELGEKWHADHVKPVIRFDGNMLHQERDDISNMVPECHPCNLHKHCSSLEDYRRIISDGRREFLASGKGKALVRMGLVEMKSDPVVFWFEIYQEGATA
complement(1851874..1852092)       PHAGE_Entero_933W_NC_000924: hypothetical protein; AD871_10425; phage(gi9632473)     9.64e-40            Shigellaflexneri4cMVTLFRKKYPRKSRTTEFLFLILFIVLMTPISPQIFVWIIGKIIEPVIELYNDVVWASFNTLHNKINPYKES
complement(1852185..1852541)       PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; AD871_10430; phage(gi100050)     5.46e-12            Shigellaflexneri4cMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(1852599..1853021)       PHAGE_Shigel_Stx_NC_029120: LygF; AD871_10435; phage(gi985761265)                    9.87e-66            Shigellaflexneri4cMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDREIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
complement(1853036..1853782)       PHAGE_Salmon_SPN3UB_NC_019545: DNA replication protein DnaC; AD871_10440; phage(gi423262428)     1.10e-100           Shigellaflexneri4cMKNIATGGVLERIRRLTPPHVTAPFRTVAEWREWQLAEGQKRCEEINRLNRQLRVEKILNRSGIQPLHRKCSFANYRAQNDGQRHALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLMAKGRSVIIVTVSDVMSVLHESYDNGKSGEKFLQELCGVDLLVLDEIGMQRDTKNEQVVLNQIVDRRTASLRGVGMLTNINHAAMNTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
complement(1853789..1854418)       PHAGE_Salmon_SPN3UB_NC_019545: PrpO; AD871_10445; phage(gi423262427)                 1.00e-24            Shigellaflexneri4cMLEGRLSGGTAAEFCNSAVVALQAAGLDVCREYPVPERGDGCGGRIDIVVTDRNGVRCGIELDRNSPRQKSLLKIGAVETGICVLRRSDIARHTEQGILVIGGAVRQKKFDPLSVDLPDWLSETLWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG
1854621..1854986                   PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; AD871_10450; phage(gi17546153)     8.44e-59            Shigellaflexneri4cMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
1855010..1855849                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; AD871_10455; phage(gi24114950)     0.0                 Shigellaflexneri4cMSRAQLHVILRRTDDWMDGRRSRHTDYTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
1856377..1856679                   PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_10460; phage(gi21231087)            1.46e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
1856715..1857533                   PROPHAGE_Escher_CFT073: transposase insF; AD871_10465; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1858150..1859070                   hypothetical protein; AD871_10475                                                    N/A                 Shigellaflexneri4cMMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYPAIVVSHPGGGVKEQTAGTYAEKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDVSAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSMFRNGWENNVKSIDALPHIEAGSNARTSDISSEEYAIMPLAPMKEADAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPMQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
complement(1859446..1860642)       PROPHAGE_Escher_CFT073: transposase; AD871_10485; phage(gi26248352)                  0.0                 Shigellaflexneri4cMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIAALHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS

#### region 11 ####
2051551..2051565                   attL                                                                                 N/A                 CCCTGTCGATGGACG
complement(2056284..2057945)       PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; AD871_11525; phage(gi100002)     3.08e-100           Shigellaflexneri4cMTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV
complement(2057929..2058240)       PHAGE_Salmon_ST64B_NC_004313: terminase small subunit; AD871_11530; phage(gi23505446)     1.02e-14            Shigellaflexneri4cMKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRLE
complement(2058311..2058484)       hypothetical protein; AD871_11535                                                    N/A                 Shigellaflexneri4cMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAKRLTDRDREVMECFRNR
complement(2058477..2058917)       PHAGE_Bacill_phi105_NC_004167: hypothetical protein; AD871_11540; phage(gi22855043)     2.20e-25            Shigellaflexneri4cMPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRARGYSRQWDKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPLCQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE
complement(2058917..2059213)       PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; AD871_11545; phage(gi526244642)     8.09e-10            Shigellaflexneri4cMTEELITLEEVKLHCRIDGDDEDQLISGYIAASLEACQIHIGRRFDDGLAFTPAIKIGCMMFIAHLYENRQIVADNAKTRVPMTIGALWTAYRDVGGY
complement(2059210..2059548)       PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; AD871_11550; phage(gi9634168)     1.29e-34            Shigellaflexneri4cMNIGRLRDRITIQTLKQTRDITGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
complement(2059545..2060756)       PHAGE_Shigel_SfIV_NC_022749: portal protein; AD871_11555; phage(gi557307529)         2.11e-47            Shigellaflexneri4cMWPFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
complement(2060758..2061315)       PHAGE_Entero_IME_EF4_NC_023551: prohead protease; AD871_11560; phage(gi589893040)     3.97e-36            Shigellaflexneri4cMKSMEIRSSEITTSGAGTLTGYVVRWDKLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTGRDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPRADNRRWWADLAGV
complement(2063002..2063307)       hypothetical protein; AD871_11570                                                    N/A                 Shigellaflexneri4cMSEPKFGEKFYKHNGRITILQISAATPGWWVETDEGSSPVASWELCVLSYPDRDVYQDILPVISTDKGMKPVDIKNMGFQCVMLTEKMMEEMKKNNAGSLH
complement(2063304..2063582)       hypothetical protein; AD871_11575                                                    N/A                 Shigellaflexneri4cMHTSGKFNKSFKKRRDRTEPKYRALDMTEHALKVAIRTIDRHAGEGYAKAHPELISAFMTTTAANFATLTEREIAEAEQVTTINVKTGEVES
complement(2063871..2065619)       PHAGE_Entero_P4_NC_001609: DNA primase; AD871_11580; phage(gi9627512)                3.21e-103           Shigellaflexneri4cMKLAPNVKKQPRGIKHKDTEVIIFAGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVVIYSEHRATFSKRVINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGRAQVVGSRLIVLADQPKYTGEGTGIKKITGGDPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKGVTQTNAITTDECDAFL
complement(2065616..2065915)       hypothetical protein; AD871_11585                                                    N/A                 Shigellaflexneri4cMKLKYSGLTASGNTHPKFTRGDIYRDQYGGMVTIKGVAERRITYRREGYEYDCVMPVYQFRRDFTLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK
complement(2065921..2066154)       hypothetical protein; AD871_11590                                                    N/A                 Shigellaflexneri4cMRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSRIATALITLLEPVIMELQEIDLLHDRYKEQHTGE
complement(2066369..2066590)       hypothetical protein; AD871_11600                                                    N/A                 Shigellaflexneri4cMHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFALECIRYIATRSLNDAKNILVADCENGGGYA
complement(2066580..2066780)       lcd-like protein from phage origin; AD871_11605                                      N/A                 Shigellaflexneri4cMVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARSRCPSGCVAVFAARIRQGETYAQ
2066910..2067089                   phage protein; AD871_11610                                                           N/A                 Shigellaflexneri4cMSTHKNERRGNPPFQFRLDPDLREKMEKAQQQDGDDSLAAWIKRIIRKELQQRGIEPKG
complement(2067593..2067781)       PHAGE_Entero_P4_NC_001609: transcriptional regulator; AD871_11620; phage(gi9627517)     1.17e-10            Shigellaflexneri4cMLSTDRFIREKECEKLTGLSRSCRYRLEKAGQFPSRRKLGGRSVGWSLSEVLAWKDSCKAVH
complement(2068156..2069385)       PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; AD871_11625; phage(gi399528791)      7.78e-69            Shigellaflexneri4cMSRALNKLSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLTWYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQEALKPVTVGDALTYWLESYAKENRVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQVAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGELLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWTERLGILAGTHENVTTLPVARRK
2069634..2070755                   50S ribosomal protein L16 arginine hydroxylase; AD871_11630                          N/A                 Shigellaflexneri4cMEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG
complement(2070804..2072030)       PHAGE_Brevib_Jenst_NC_028805: putative peptidase M20; AD871_11635; phage(gi971745009)     1.31e-05            Shigellaflexneri4cMDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKNIPHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVILEGMEKAVQVIVRIAELTAQRK
2072086..2072301                   hypothetical protein; AD871_11640                                                    N/A                 Shigellaflexneri4cMRQVTFTPASGNIYQHYLNEYKAKPVIHNKDWRFKRFAVELPPSLGVTKVVNHKPRIGKPSVAFTWDRVKN
2072280..2073416                   PHAGE_Bacill_G_NC_023719: gp245; AD871_11645; phage(gi593777701)                     1.19e-34            Shigellaflexneri4cMGQSKKLNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELENGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK
2074834..2074848                   attR                                                                                 N/A                 CCCTGTCGATGGACG

#### region 12 ####
2135266..2135280                   attL                                                                                 N/A                 TTGTTTTTGCCGGAT
2141228..2142160                   PHAGE_Bacill_WBeta_NC_007734: putative site-specific recombinase; AD871_12000; phage(gi85701406)     1.02e-11            Shigellaflexneri4cMRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSLSFKDLGKSAFSGKHLKGGLGDFLTAIEKGLVKAGDTLLIESLDRLSRQDIDIASELLRRILRAGVDVVTLSDGEHYTRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKKELISEGIKVSRRCPAWLRLNDDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLNDEGHLSLNQYTPKQKGWSDTAVKKLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRVQQLNTGQYGRASVSSNPLSVNLFRGIIKCEVYWQ
complement(2142185..2143003)       PROPHAGE_Escher_CFT073: transposase insF; AD871_12005; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2143039..2143341)       PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_12010; phage(gi21231087)            2.08e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
complement(2143629..2144147)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; AD871_12015; phage(gi157166067)     5.79e-121           Shigellaflexneri4cMAERPEQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(2144159..2144512)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; AD871_12020; phage(gi157166067)     1.07e-42            Shigellaflexneri4cMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWQKKEIQRVYDENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
complement(2144512..2144838)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; AD871_12025; phage(gi157166066)     1.32e-72            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKK
complement(2145234..2146139)       PROPHAGE_Escher_MG1655: IS2 transposase TnpB; AD871_12030; phage(gi16132094)         0.0                 Shigellaflexneri4cMDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2146097..2146462)       PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; AD871_12035; phage(gi17546153)     8.44e-59            Shigellaflexneri4cMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
complement(2147035..2147712)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_12045; phage(gi41057343)     3.62e-170           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(2147901..2148203)       PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_12050; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
complement(2148273..2148518)       hypothetical protein; AD871_12055                                                    N/A                 Shigellaflexneri4cMAELAIELDDMTIITEKLRDMKNALSKLNHDIEEDTKRIKAITTGSLKDIDRTTKEGMVETQLLIKGVLKEIVIDAAKRRC
2148635..2148961                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; AD871_12060; phage(gi157166066)     1.32e-72            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKK
2148961..2149314                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; AD871_12065; phage(gi157166067)     1.07e-42            Shigellaflexneri4cMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWQKKEIQRVYDENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
2149326..2149844                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; AD871_12070; phage(gi157166067)     5.79e-121           Shigellaflexneri4cMAERPEQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
2150686..2150988                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_12080; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
2151177..2151854                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_12085; phage(gi41057343)     3.62e-170           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(2151829..2152809)       PHAGE_Escher_HY02_NC_028872: putative tail length tape-measure protein; AD871_12090; phage(gi971750937)     9.94e-53            Shigellaflexneri4cMTLPVFITVIADHDKPQPSGCLLDNLSSAAVKTAGVLISFQAVLSAYQRVMEVGLQRASAERSIDFVFSKDANQVKDFTKSLAQTTGLDIAELQSQFAGFGASARESLGIQGSEELFRNMIGYSRLMGRSEEEIKRALTALSQMAGKGQIMAEELKGQLAEAVPGMVQVFAKATGKTEQELFDAMKKGALKSADTLQKVTQELNKQITAKGGWKAISESTQAQLGNLKNSWNTTLDSIFRGSENGLQDFTRSLTNLLNALGGSGKSLGESLGSLMTSMSHGVDSLTDISYRVRAFFDEVTLAYRPLNDTQRKIVDGEVVNKNWPPS
2154680..2154694                   attR                                                                                 N/A                 TTGTTTTTGCCGGAT

#### region 13 ####
2353247..2353258                   attL                                                                                 N/A                 TGCGACCACAGG
2362304..2362996                   PHAGE_Entero_HK106_NC_019768: integrase; AD871_13245; phage(gi428783305)             8.03e-168           Shigellaflexneri4cMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
2363131..2364414                   acyl-CoA thioesterase; AD871_13250                                                   N/A                 Shigellaflexneri4cMNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEALNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEEKK
complement(2364555..2366735)       hydratase; AD871_13255                                                               N/A                 Shigellaflexneri4cMIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
complement(2366918..2368351)       membrane protein; AD871_13260                                                        N/A                 Shigellaflexneri4cMNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKLIAYLLIGKIGNTMLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
complement(2368427..2369479)       isomerase YbhH; AD871_13265                                                          N/A                 Shigellaflexneri4cMKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
complement(2370657..2371652)       6-phosphogluconolactonase; AD871_13275                                               N/A                 Shigellaflexneri4cMKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESVLPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDYSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
2372533..2374359                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; AD871_13280; phage(gi169257209)     3.48e-05            Shigellaflexneri4cMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSDDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(2374360..2374539)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; AD871_13285; phage(gi849255281)     6.52e-08            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRPPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2374539..2375156)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; AD871_13290; phage(gi730985066)     9.88e-44            Shigellaflexneri4cMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQRIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPNSLGRLYPVVMAAKSDIVRDVMTWGDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
2375222..2375524                   PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_13295; phage(gi21231087)            2.08e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
2375560..2376378                   PROPHAGE_Escher_CFT073: transposase insF; AD871_13300; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2376390..2376593                   racC domain protein; AD871_13305                                                     N/A                 Shigellaflexneri4cMVVSAIASTPHIGYVIKTENKETPFTVVDIDGLSGNFKTLVEGATKMCLVYIGNNLPAEKKPNFWQI
2376722..2377366                   PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; AD871_13310; phage(gi985761253)     7.12e-27            Shigellaflexneri4cMSTKPLFLLRKAKKSSGEPDVVLWASDDFESTSTTLDYLLVKSGKKLSNYFKAVATNFPVVNDLPPEGEIDFTWSERYQLSKDSMTWELKPGAAPDDVHHQDNAQETKELAGGQEENAQADAHEDCQDCEVSVATLRFTQRLLHIFTYAAGDLKYLHHATREQRKHITALEMDQENSYVQNLLLAIRGMAEPTTLDNAALLRLTDAIKAEVYWQ
complement(2377391..2378209)       PROPHAGE_Escher_CFT073: transposase insF; AD871_13315; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQIAA
complement(2379061..2379909)       PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; AD871_13325; phage(gi428782357)     3.42e-68            Shigellaflexneri4cMLNVAIENQNGWNYSAPAPHKTGAGIATPTMTTAHNRAQAVFLCVKHSHIQIMVGRAGQPQGWPVSVVTGCSNPVRLTTHEIATSGGESFKLTIEAAIMATILTLSHPDATIENGRAVTTSVAVAEFFRKMHKNVIQKIETLECSPEFNRLNFKPVTYTDAKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIAEFDRMEAELRQNNTPPADKMIPGDGRTLVVHFDKFGNVEFTETVPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLLSLK
2380457..2380822                   PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; AD871_13330; phage(gi17546153)     8.44e-59            Shigellaflexneri4cMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
2380780..2381685                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; AD871_13335; phage(gi24111655)     0.0                 Shigellaflexneri4cMDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2381927..2382130)       PHAGE_Shigel_Stx_NC_029120: hypothetical protein; AD871_13340; phage(gi985761256)     5.90e-11            Shigellaflexneri4cMNETELKHVIALLLEDAKRLQQLEPNAGTGARIWLAKEALESGDYDSEEAFYKAEGRAGYSPGLGGV
complement(2382132..2382287)       PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; AD871_13345; phage(gi472340166)     2.43e-11            Shigellaflexneri4cMNTIDLGNNESPVYGVFPNQDGTFTAITYTKSKTFKTEAGARRWLGRHSGE
complement(2382490..2382897)       PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; AD871_13350; phage(gi401817574)     4.38e-39            Shigellaflexneri4cMKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPESEQKALLSEMRARVENFNKLFEELLKARKRSANK
2382974..2383201                   PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; AD871_13355; phage(gi422936651)     8.52e-13            Shigellaflexneri4cMLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQEASGGELQYDPKVYDEYRKAKRPGKVIHENQA
2383185..2383607                   PHAGE_Entero_mEp237_NC_019704: CII protein; AD871_13360; phage(gi435439306)          8.85e-10            Shigellaflexneri4cMKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELSLVPGKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSPGDSVVVH
2385230..2385652                   PHAGE_Shigel_Stx_NC_029120: LygF; AD871_13375; phage(gi985761265)                    4.79e-67            Shigellaflexneri4cMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDGEIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
2385710..2386066                   PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; AD871_13380; phage(gi100050)     5.46e-12            Shigellaflexneri4cMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
2386235..2386900                   hypothetical protein; AD871_13385                                                    N/A                 Shigellaflexneri4cMTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASEIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWDYNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE
2387071..2387283                   PHAGE_Entero_933W_NC_000924: protein MokW; AD871_13390; phage(gi9632542)             2.75e-41            Shigellaflexneri4cMLCTCRLASYMPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESRK
2387566..2387868                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_13395; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
2388057..2388734                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_13400; phage(gi41057343)     3.62e-170           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(2388740..2388988)       PHAGE_Salmon_HK620_NC_002730: endopeptidase; AD871_13405; phage(gi13559860)          1.01e-41            Shigellaflexneri4cMSGNIGANPVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNARELKLANATITDMQQRQRAADALDAKYTTELANAK
complement(2389274..2390875)       PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_13410; phage(gi209447153)            0.0                 Shigellaflexneri4cMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGGLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(2390872..2391222)       PHAGE_Stx2_c_1717_NC_011357: transposase; AD871_13415; phage(gi209447152)            1.33e-34            Shigellaflexneri4cMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFTKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
complement(2391219..2391893)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; AD871_13420; phage(gi209447151)     7.40e-10            Shigellaflexneri4cMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLSDPLTPELLRALIREMKGGIR
2399774..2399785                   attR                                                                                 N/A                 TGCGACCACAGG

#### region 14 ####
2425078..2425443                   PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; AD871_13565; phage(gi100010)       3.18e-53            Shigellaflexneri4cMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
2425401..2426306                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; AD871_13570; phage(gi16132094)         0.0                 Shigellaflexneri4cMDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
2426953..2427096                   hypothetical protein; AD871_13575                                                    N/A                 Shigellaflexneri4cMTFPDTLSDLRCAKATFSFLSYPQSYALARGSFSHYLAVNPKHTPYI
2427177..2429462                   PHAGE_Colwel_9A_NC_018088: ribonucleotide-diphosphate reductase subunit alpha; AD871_13580; phage(gi392973311)     0.0                 Shigellaflexneri4cMNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
2429696..2430826                   PHAGE_Pseudo_OBP_NC_016571: putative NrdB; AD871_13585; phage(gi371671580)           0.0                 Shigellaflexneri4cMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
2430826..2431080                   PHAGE_Cyanop_S_RIM50_NC_031242: head outer capsid protein; AD871_13590; phage(gi100204)     7.99e-06            Shigellaflexneri4cMARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
complement(2431134..2431784)       hypothetical protein; AD871_13595                                                    N/A                 Shigellaflexneri4cMAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
2431999..2432205                   hypothetical protein; AD871_13600                                                    N/A                 Shigellaflexneri4cMNFIRQGLGIALQPELTLKSIAGELCSVPHEPTFYRQISLLTKEKPVEGSPLFLLQMCMEQLVAIGKI
complement(2432247..2433323)       PHAGE_Staphy_MCE_2014_NC_025416: glycerophosphoryl diester phosphodiesterase; AD871_13605; phage(gi725948760)     4.61e-11            Shigellaflexneri4cMKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE

#### region 15 ####
2750904..2752730                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; AD871_15175; phage(gi169257209)     3.80e-05            Shigellaflexneri4cMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFTVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2752731..2752910)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; AD871_15180; phage(gi849255281)     2.65e-06            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2753464..2754705)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; AD871_15190; phage(gi18249920)     1.32e-97            Shigellaflexneri4cMSGYHIILKSRVNTPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPGTPTGTYIVSPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTSRGMHRGN
complement(2754777..2755322)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; AD871_15195; phage(gi849255280)     1.77e-53            Shigellaflexneri4cMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
complement(2755325..2755798)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; AD871_15200; phage(gi849255282)     1.84e-28            Shigellaflexneri4cMAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
2755907..2756272                   PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; AD871_15205; phage(gi17546153)     3.25e-58            Shigellaflexneri4cMIDVLGPEKRRRRTTQEKITIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
complement(2756275..2756577)       transposase; AD871_15210                                                             N/A                 Shigellaflexneri4cMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
complement(2757060..2758046)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; AD871_15215; phage(gi849255282)     2.81e-27            Shigellaflexneri4cMKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFPPVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAILAGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLSDLQNKGTARDNLQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEGQGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGNSIVLGDNDTGFKQNGDGILDVYANSQRVFRWICPYISRHLLSLNPLQARCRRYSRGER
complement(2758033..2758638)       PHAGE_Aeromo_vB_AsaM_56_NC_019527: hypothetical protein; AD871_15220; phage(gi422937564)     5.56e-40            Shigellaflexneri4cMQNVAATVLAQYAASPRLNALINSFNAALSPDSFISDFYGLIWNIDTAEKYGLDVWGKIVGVSRWLTVKDDFNYLGFSESRMDTPVMDDPCPFNQAPFYNGKSDTRTVDLSDAVYRRLILMKAMSNITDCSVPDINLMLRFMFGKKRRAYVLNNGGLRMSYVFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ
complement(2759131..2759322)       PHAGE_Acinet_phiAC_1_NC_028995: putative baseplate J-like protein; AD871_15230; phage(gi971763836)     2.13e-08            Shigellaflexneri4cMPGSDEETRADFENRRRNSVARNARNILEAIRGEILSTVENVVDVYVTHNPKKTEQKAGVSIH
2759402..2759704                   PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_15235; phage(gi21231087)            1.46e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
2759740..2760558                   PROPHAGE_Escher_CFT073: transposase insF; AD871_15240; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKHHQMAA

#### region 16 ####
3751284..3751295                   attL                                                                                 N/A                 GGAATAATCTTC
3751376..3752026                   PHAGE_Bacill_G_NC_023719: gp249; AD871_20450; phage(gi593777705)                     1.25e-09            Shigellaflexneri4cMFILLAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
3752130..3753104                   bifunctional glyoxylate/hydroxypyruvate reductase B; AD871_20455                     N/A                 Shigellaflexneri4cMKPSVILYKALPDDLLQRLQAHFTVHQVANLSPQTVVQNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRVHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD
complement(3753154..3753864)       hypothetical protein; AD871_20460                                                    N/A                 Shigellaflexneri4cMATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
3754869..3755081                   PHAGE_Lactoc_bIL312_NC_002671: Csp; AD871_20470; phage(gi13095918)                   2.59e-24            Shigellaflexneri4cMSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL
complement(3755268..3755420)       PHAGE_Entero_933W_NC_000924: host killer protein; AD871_20475; phage(gi9632541)      4.89e-06            Shigellaflexneri4cMPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQESYELAAFLAYKLKE
complement(3755522..3756373)       PROPHAGE_Escher_MG1655: IS150 transposase B; AD871_20480; phage(gi16131429)          0.0                 Shigellaflexneri4cMKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRIGEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV
complement(3756370..3756864)       PROPHAGE_Escher_MG1655: IS150 transposase A; AD871_20485; phage(gi16131428)          1.69e-115           Shigellaflexneri4cMRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKISTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMYLKKLKALAHPTKK
3757113..3757616                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_20490; phage(gi557307573)      3.92e-109           Shigellaflexneri4cMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
3765622..3765633                   attR                                                                                 N/A                 GGAATAATCTTC

#### region 17 ####
complement(4457866..4458462)       PHAGE_Mycoba_32HC_NC_023602: integrase; AD871_24010; phage(gi589893371)              1.85e-08            Shigellaflexneri4cMSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV
4458935..4458946                   attL                                                                                 N/A                 TATCTCTATAAA
complement(4459057..4459542)       PHAGE_Thermu_P7426_NC_009804: phage XerD-like integrase; AD871_24015; phage(gi157265417)     7.43e-10            Shigellaflexneri4cMRNKADNKKRNFLTHSEIESLLKAANTGPHATRNYCLILLCFIHGFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRYSCGFALANMGIDTRLI
4459952..4460197                   hypothetical protein; AD871_24020                                                    N/A                 Shigellaflexneri4cMERSNFLVAIIMLILRSLAIIPAWFVSLGHEIVTFLFILEIWGNAGDAFSSTSVGKYSFGHYDLSLPQSQLFAGRYGKQTK
complement(4460479..4460625)       hypothetical protein; AD871_24025                                                    N/A                 Shigellaflexneri4cMFAIDYEMPSLIDYRGASLYLLYQIKNHAIHTTKPDLQFASQNMSIFF
4461164..4461712                   porin; AD871_24030                                                                   N/A                 Shigellaflexneri4cMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL
4461732..4462838                   N-acetylneuraminic acid mutarotase; AD871_24035                                      N/A                 Shigellaflexneri4cMNKTIMALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPREQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLDPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN
4462903..4463883                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; AD871_24040; phage(gi116221995)     2.34e-125           Shigellaflexneri4cMNAIISPDYYYVLTVAGQSNAMAYGEGLPLPDREDAPHSRIKQLARFAHTHPGGPPCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRTRAALAKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKENFPHSYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSSHFSTAARRGIISDRFVEAILQFWRER
complement(4464352..4464747)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_24045; phage(gi557307573)      4.72e-84            Shigellaflexneri4cMIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESCLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(4464774..4464998)       PHAGE_Entero_P1_NC_005856: InsA; AD871_24050; phage(gi46401643)                      6.20e-47            Shigellaflexneri4cMRNGKSTAGHLRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
4465082..4465093                   attL                                                                                 N/A                 ATCAGTAAGTTG
4465144..4465839                   DeoR faimly transcriptional regulator; AD871_24055                                   N/A                 Shigellaflexneri4cMLEVSVMTIRRDLHQEDEPLPLTLLGGYIVMVNKPAPSMPVIHDVPKNHRDDLPIAILAAGMVNENDLIFFDNGQEIPLVISMIPDAITFTGICYSHRVFVALNEKPNVTAILCGGTYRARSDAFYDASNSSPLDSLNPRKIFISASGVHNHFGVSWFNPEDLATKRKVMNRGLRKILLARHALFDEVASASLAPISAFDVLISDRPLPADYVTHCQNGSVKIITPDSEDE
complement(4465841..4465939)       acetolactate synthase; AD871_24060                                                   N/A                 Shigellaflexneri4cMISQIDKLEYVVKVQRNQSNPTMFNKIVVFFQ
complement(4465940..4466056)       acetolactate synthase; AD871_24065                                                   N/A                 Shigellaflexneri4cMWAFARRALNVEDILCLPIQDCDKSHIWLLVKDDQRLE
4466315..4466593                   PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; AD871_24070; phage(gi557307550)            3.18e-48            Shigellaflexneri4cMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAWIKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKAAAYFAKLSD
4466662..4466964                   PROPHAGE_Xantho_33913: ISxac3 transposase; AD871_24075; phage(gi21231087)            1.46e-12            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
4467000..4467818                   PROPHAGE_Escher_CFT073: transposase insF; AD871_24080; phage(gi26249410)             0.0                 Shigellaflexneri4cMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRSKQKRKFRATTNPNHNLPVVPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
4467917..4468729                   PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; AD871_24085; phage(gi557307549)            0.0                 Shigellaflexneri4cMLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV
4469304..4469528                   PHAGE_Entero_P1_NC_005856: InsA; AD871_24090; phage(gi46401643)                      4.71e-48            Shigellaflexneri4cMRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
4469555..4469950                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AD871_24095; phage(gi557307573)      3.37e-85            Shigellaflexneri4cMIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
4470143..4470445                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; AD871_24100; phage(gi24373865)       1.62e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR
4470634..4471311                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; AD871_24105; phage(gi41057343)     3.62e-170           Shigellaflexneri4cMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(4471286..4472497)       PROPHAGE_Escher_CFT073: prophage P4 integrase; AD871_24110; phage(gi26251179)        0.0                 Shigellaflexneri4cMALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVSLADARARRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMFEVVNKNWPPS
4472572..4472583                   attR                                                                                 N/A                 ATCAGTAAGTTG
4486721..4486732                   attR                                                                                 N/A                 TATCTCTATAAA
