gi|00000000|ref|CP012513.1|  Salmonella enterica subsp. enterica serovar Thompson strain 4708710, gc%: 52.25%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1058867..1060069)       PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; STho1984_0991; phage(gi100242)     3.53e-49            SalmonellaentericasubspentericaserovarThompsonMTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLQEDEFQWLSGLPFFKPDYLNWLREFRYNPDQVCVTNDNGKLNIRLTGPWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTALTANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQAHEWFQAHQQISPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASRYQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQVRKAS
1060215..1060229                   attL                                                                                 N/A                 TTATAAAAATGTAGC
complement(1060264..1061556)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; STho1984_0992; phage(gi169257268)     0.0                 SalmonellaentericasubspentericaserovarThompsonMANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSPNLARFGQDRKEITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
complement(1061601..1061849)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; STho1984_0993; phage(gi169257269)     1.63e-55            SalmonellaentericasubspentericaserovarThompsonMSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYLHISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT
complement(1061890..1062129)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; STho1984_0994; phage(gi169257264)     1.38e-52            SalmonellaentericasubspentericaserovarThompsonMRLINRSKQSPLGRRACDVALAAHHEKFGDYGRQKHVTNYTVVVDGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN
complement(1062172..1063281)       PHAGE_Phage_Gifsy_1_NC_010392: RecT; STho1984_0995; phage(gi169257263)               0.0                 SalmonellaentericasubspentericaserovarThompsonMENTNIVTTEQQAPNTISASNAIFNVQALGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYAVAQKTHLVNGVLGYEAQLVNAVIASSSAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKYTVTERVRGWTDEDEIGLFVQVGAILRGESEITWGEPLYLSGVVTRNSPLWVSNPKQQIAYLGVKYWARLYCPEVILGVYSPDEVEQREEREINPAPVQRMSVQEITSEVSTRTSAQESAANVDAVADDLRERIDTASSVDQAKAIRADIESQKALLGTALFTELKNKAVKRYYQVDAQNKVEAVINSIPNPGEPEAAAMFAKAESTLGAAKRHLGDELHDKYRVTLDDMKPEYIG
complement(1063292..1066219)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage exodeoxyribonuclease VIII-like protein; STho1984_0996; phage(gi169257262)     0.0                 SalmonellaentericasubspentericaserovarThompsonMSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKSGAKLKDYFKAVATNFPVVNELPPEGELSFTFCDYYQLAKDNMTWTQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQYIGEGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDVHKVVNAIKKVFPVDGKTPELATVIQFLKTWFETEHIDRSLLVKEWAKGNRVSAIQRTESGANAGGGNKTDRNPDYEHTLDTLDVEIAMATLPMDFNIYELPGSVYRRAKEIVKKKESPFKEWSAALRATPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINANLTETDHENPTEEALTAARHTPEKDAVEEANRQLAAARGEYVEGISDPNDPKWVKTGTSQPTTEPGLVKNVGNGIFDVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEGDLGTGKEAVTVENQNQAETHQNNDSVSQSEPEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPNEVYHAANGISSTQVKDARVSLMYFNARHVEKTIVKERSPVLDMGNLVHVLALQPENLEAEFSVEPEIPEGAFTTTATLREFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVDETYASYEQLPEEFQRIENGTKHTATAMKACIKEYNATLPAPVKTSGSRDALLEQLAIINPDLVAQEAQKSSPLKVSGTKADLIQAVKSVNPAAVFADELLDAWRENTEGKVLVTRQQLSTALNIQKALLEHPTAGKLLTHPSRAVEVSYFGIDEETGLEVRVRPDLELDMGGLRIGADLKTISMWNIKQEGLRAKLHREIIDRDYHLSAAMYCETAALDQFFWIFVNKDENYHWVAIIEASTELLELGMLEYRKTMREIANGFDTGEWSAPITEDYTDELNDFDVRRLEALRVQA
complement(1066346..1066633)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; STho1984_0997; phage(gi169257261)     4.46e-64            SalmonellaentericasubspentericaserovarThompsonMEIVKIEMNLKAVNKSIALFNCEKKVSGVIHSNSTGETTVILDGGYVLGKFDCPHCAVEAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH
complement(1066718..1066888)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; STho1984_0998; phage(gi169257260)     5.31e-14            SalmonellaentericasubspentericaserovarThompsonMHNQKTCAYHLCGKTIEQGKEVKNELTLIRGAQLTHEERDYCSVRCASYDQMAHES
1067285..1067491                   PHAGE_Entero_HK225_NC_019717: hypothetical protein; STho1984_0999; phage(gi428782417)     1.15e-24            SalmonellaentericasubspentericaserovarThompsonMDRDELEEDRAAFIAGEIGGAVVELIIDGVVINRDAIVERLEEKRRAVGNVIHKGVLRDAAAMVRKGQ
complement(1067518..1068459)       PHAGE_Lister_vB_LmoS_188_NC_028871: hypothetical protein; STho1984_1000; phage(gi971750825)     2.55e-30            SalmonellaentericasubspentericaserovarThompsonMDAGSDSETNDMKFRIVYDGPALETHEMNVRDLAPALLSLSDALEEAGKTVYGNKTVVSVKVNASFKAGSFGIDLIASSTSWIKQAVDFFSGDTATAAANLIALIGFCPGPREKICKGLIQLVKWIGPREIKKLHNLPDSNVEVFVDDDSEIFDSKVIELYRNIKLRSSLQEVISKPLEQEGIDSFASTVDDGLTFMTIDKQEAHYFKVELPAESIISESTVEKALQIKNISFNEGSRWRFSDGSSSFLAEIKDQKFISDIDNNTLNFSKGDMLLVDLKVTQYMIGDAIKTTFEIEHVKKQLNPQRQIDLPFE
complement(1068565..1068960)       PHAGE_Entero_mEp237_NC_019704: hypothetical protein; STho1984_1001; phage(gi435439303)     5.20e-66            SalmonellaentericasubspentericaserovarThompsonMRKNTHQTDNPQVRRLNEIIEKKRISKADIARICGVSAQSVNNWFVRGAIGKSSAIKLADALGVSLEWVLGQDVDAKDGLRHDERRLLELYNQLPNEEEQQNMLRIVSLRLKELDELYAKYMGRRIKGDAE
1069065..1069301                   PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical prophage protein; putative Cro analog; STho1984_1002; phage(gi169257257)     6.42e-15            SalmonellaentericasubspentericaserovarThompsonMNALEKAIQVAGNSSKLAEKLGVSSMTISHWKKRYGGVVPKGRVFPIFHVTGITPHELRPDMYPNPTDGLPSQEASAK
1069321..1069641                   PHAGE_Phage_Gifsy_1_NC_010392: probable regulatory protein; transcriptional activator; lambda CII analog; STho1984_1003; phage(gi169257256)     3.85e-72            SalmonellaentericasubspentericaserovarThompsonMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
1069726..1070709                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage replication protein O; STho1984_1004; phage(gi169257255)     0.0                 SalmonellaentericasubspentericaserovarThompsonMSMSNTAEIYKFPAPVPTQQECRMADLENGYLRLANQIQDALCIVELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIIILRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYPRKGGRASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPFNPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDEGHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG
1070712..1071461                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage DNA replication protein; DnaC homolog; STho1984_1005; phage(gi169257254)     7.59e-179           SalmonellaentericasubspentericaserovarThompsonMKNVIGTGSALDRLKRIIPASVQPKFSTADEWRTWQEAEGRKRSEELDRMNQKSRTEKIFGRSGIQDLHRGCTFANYEVNGDGQRKAFTMAKSYAQNFGAGFASFVFSGGPGTGKNHLAAAIGNHLLASGHSVLVVTIPDLMLRVRECYDGGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGALTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWGSYRKNVSHLRIVK
1071472..1071819                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; STho1984_1006; phage(gi169257253)     5.13e-72            SalmonellaentericasubspentericaserovarThompsonMARPKTHSERMIILERIIGLVKEQGRITTNDVVAMFGVHRTTAEKYLQIALVRGGFIRHGRCGVFRDQRAVIDYDLKRYSCNKTTGFSALPALEKSQVMQVYGASKMSINKGGAQ
1071816..1072136                   PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; STho1984_1007; phage(gi423262430)     1.71e-36            SalmonellaentericasubspentericaserovarThompsonMSNIDKQALLGADKHANQHRLSRLIIEANSAELRAIAEAVEQYTDQLIAALADSEKRIAELESKLSKPVLLPKTNGYWTEQEKAYEEAITLAKRQVRLAGFSVEDM
1072136..1072381                   PHAGE_Entero_ES18_NC_006949: gp40; STho1984_1008; phage(gi62362253)                  3.50e-44            SalmonellaentericasubspentericaserovarThompsonMAIFMEVRCEGLGDIDGCFSSQNAGSITSARESVKSVSIALKFLKDDSLNNGWVLHKGELYCPVCAKAKALAAAGIKWKAE
1072692..1073909                   PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; STho1984_1009; phage(gi410491517)     2.97e-156           SalmonellaentericasubspentericaserovarThompsonMTDTAYSKSLEKEVDPEQYLVLTGHTIDTIHTFAREDIVCPICEATGGTFVRGGTNARFNRRAHFRFRNTKDKSNHHPSCDFYDERISPDVKNHLVYFSTDRTKITHVIRKMVCAGIQEGFFDQESMRQMRKWFFQKRVDSTFKLSLTEEQVSWLHYITDNTSVNWGYVNGVAPFSPVQATIPGFSWEDAIQREFTLVHLPTLRKLQDLKVWRKQLSMLTKFVSSPSQGVLIDPTLLKDEYEKTLQLNAFIISSYDEFKNKSVRDRADGEVKLLAFSALLLFVSGWDINQAIEKFAVIANVDEVYDDLAGNFIGLNPYLKFELADTARKLQENWPIEYKEINYWQVEKRMRAMYEEDQKSRSTPLPPLPADIYITEHLKRKEEEERVRRWLEADRIEFDNDITEE
1074052..1074378                   hypothetical protein; STho1984_1010                                                  N/A                 SalmonellaentericasubspentericaserovarThompsonMKPKKLNAKQQYQLDLELVKKKPANRTEAKAHLAAQLRISKYKLQTSSKIRVGSFRGRKKVHFSKAEEDARAALNKANAIRFSEGEVESVDTDRISKSNKRWRGRTAD
1074626..1074859                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage putative DNA damage-inducible protein; DinI homolog; STho1984_1011; phage(gi169257250)     1.99e-50            SalmonellaentericasubspentericaserovarThompsonMRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNLTIRRGSQDGLSIVGAADGDKKRIQSILQETWESADDWFY
1074976..1075224                   PHAGE_Entero_mEp237_NC_019704: hypothetical protein; STho1984_1012; phage(gi435439314)     2.86e-52            SalmonellaentericasubspentericaserovarThompsonMSNSALQKSEDSWYDIVRRSDGCVVFSFPSSGRHLIYRVNGMVSMRPLLDDEEVFTPNGFMHFIRRLGYRVTPPSDNMKSTA
1075259..1075861                   PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; STho1984_1013; phage(gi169257248)     1.03e-144           SalmonellaentericasubspentericaserovarThompsonMAHELQLIKQSSGILIPATPETSDILQSKIKLGAVLVAEFRQVRNPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVEFQQLYKSALDVLWRWILSRIFRTQREAENAAAQLMSFAG
1075861..1076067                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; STho1984_1014; phage(gi169257247)     2.48e-43            SalmonellaentericasubspentericaserovarThompsonMAMKYSWFHHHDCTTEQADTLISDYQKRGVRTEKSLNPDFITWTVSAKLPEYAHRVRTPKSLRQKVWG
1076070..1076681                   PHAGE_Phage_Gifsy_1_NC_010392: NinG; STho1984_1015; phage(gi169257246)               7.55e-147           SalmonellaentericasubspentericaserovarThompsonMAKLPRRKCANKECRQWFHPIREGQIVCSYQCASAVGKEQTRKAREAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLGCISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGNIEAYRAALVERYGEAAVLALENNNTPHRWTVEELKEIRLAALADLRALKKLEAA
1076678..1076824                   PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; STho1984_1016; phage(gi169257245)     3.11e-12            SalmonellaentericasubspentericaserovarThompsonMKPELIEILRMRWLRLRIYRYRGSFPVAYRILRNYVRIEAKREHRNES
1076814..1077611                   PHAGE_Salmon_SEN34_NC_028699: putative antitermination protein; STho1984_1017; phage(gi966201477)     0.0                 SalmonellaentericasubspentericaserovarThompsonMNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAKAAVGIELYLAKAGVLSSENIIAYIRLLAEQRAERHGALRKMEEGKRSKFLDTMARYVFRDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKSVREQVRVVCKACDGKGHVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRLKDTEIFKALGVTEMVWRYNYKLFFDRLVEHCHIEESYAEKVLGNVTR
1078010..1078135                   PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; STho1984_1019; phage(gi169257292)     8.90e-23            SalmonellaentericasubspentericaserovarThompsonMKMHNDPHSMDSQSIFAGSQLLPMEKTSHLALSVGFRSHLA
complement(1078271..1078720)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; STho1984_1020; phage(gi169257293)     2.59e-107           SalmonellaentericasubspentericaserovarThompsonMKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAGGYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLNENGLTRTHQSNCNTRSQTHSSSTSKTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF
1080037..1080372                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage lysis protein; holin; STho1984_1022; phage(gi169257240)     1.04e-73            SalmonellaentericasubspentericaserovarThompsonMKMNDKTPEFWAAVLTGLKNAWPQILGALMAGLIAYGRLIYDGATRKNKWLEGVLCGALSLCVTSALDVVGLPVSISPFVGGIIGFVGVDKLREIAISALKKRAGVNDENQ
1080359..1080808                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage lysin protein; endolysin; STho1984_1023; phage(gi169257239)     1.68e-103           SalmonellaentericasubspentericaserovarThompsonMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLKTGLVGYENDVSKLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS
1080826..1081275                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage lysis protein; Rz; STho1984_1024; phage(gi169257238)     1.24e-89            SalmonellaentericasubspentericaserovarThompsonMFVGLLLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANETITDMTKRQRDVAALDAKYTKELADAQNRNTDLQRRLAAGSRVRVEGRCSVPTRTETASTSRVGNAATVELSPGAGQNVLNIRAGIISDQEKLKYLQEYIRTQCLK
1081604..1082107                   hypothetical protein; STho1984_1025                                                  N/A                 SalmonellaentericasubspentericaserovarThompsonMRRILATAAALCLGGCITVYGPVKTGGQQQQDSQSGQQPGMSEQISTSFIGNRKPDELLNAVALYFREKAITASVNDQTTGIIAGTGDDPELSSLYLDCSLLPQTQNIQEHYRIVAQVWSAGEGSNVSVMVTGTAGLDTADGNDKVKPVECKSTGIFEKDLQERLRK
complement(1082364..1082765)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; STho1984_1026; phage(gi169257237)     1.19e-91            SalmonellaentericasubspentericaserovarThompsonMKFKSIAKTVFLFALLTSAGFATGKNVNVEFDKGQNSARYSGVIKGYDYDTYNFQARKGQKVHVSISNEGADTYLFGPGIGDSVDLSRYSSELDGNGQYTLPASGKYELRVLQTRNEARKNKAKKYSVNIQIK
1083051..1083596                   PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; small terminase subunit; Lambda Nu1 homolog; STho1984_1027; phage(gi169257236)     2.10e-115           SalmonellaentericasubspentericaserovarThompsonMNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWYAERDASIENEKLRKEVDDLRAAAESDLNPGTIDYERYRLTKAQADAQELKNAEREGLVLETELFTYILQRVAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASGRAATIADVEKWTDDFRRAQGE
1083568..1085499                   PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; large terminase subunit; Lambda gpA homolog; STho1984_1028; phage(gi169257235)     0.0                 SalmonellaentericasubspentericaserovarThompsonMISGERRANNANRAITNGLIALHIPVPLTTVQWADKYYYLPKESSYTPGKWETLPFQVAIMNAMGYELIRVVNLIKSARVGYTKMLLGVEGYFIEHKSRNSLLFQPTDSSAEDFMKSHVEPTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVKGSCQIEKAANESAHFMRFHVPCPHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEHNGCVIRQSELDQKAGRWICDNTGMWTRDGLAYFSASGEEVPPPRSITFHIWTAYSPFTTWIQIIYDWLDALKDPNGVKTFINTTLGEPYEEAVAEKLSHELLLEKVIHYAAPVPERVVYLTAGIDSQRNRYEMYVWGWAPGEEAFLIDKQIIMGRHDDEDTLQRVDAVINKKYRHADGTDISISRICWDIGGIDAEIVYKRSKKHGIFRVLPVKGASVYGKPVITMPKKRNQSGVFLCEIGTDTAKEMLYARMGAVTAPADEATPYAIRFPDNPDVFTEVEAKQLVAEELVEKLVNGKFRLLWDAKGRRNEALDCLVYASAALRVSVQRWQLDLEALATSRKSEEQDTPTLEQLAAMLAGGVNGNNH
1085483..1085686                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; STho1984_1029; phage(gi169257234)     4.65e-42            SalmonellaentericasubspentericaserovarThompsonMATITELQEARVALHDLMTGKRVATVQKDGRRVEFTATSVGDLKKYVAELEASLCNGRRRAPVGVRL
1085683..1087263                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage portal protein; Lambda gpB homolog; STho1984_1030; phage(gi169257233)     0.0                 SalmonellaentericasubspentericaserovarThompsonMKRTPVLVDVHGTPLRESLGYTGGGIGFGGQMADWMPPAESVDAALLPSLRLGNARADDLVRNNGIAANAVALHKDHIVGHLFLISYRPNWRYLGMRESAAKSFVDEVEAAWTEYCDGIFGEMDAEGKRTFTEFIREGVGVHAFNGEIFLQPVWDAETTQVFRTRFKAVSPKRVDTPGYARGNRQLRAGVETDRNGKALAYHVCDDDWPVAGGERWTRIPRFLPSGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDTLQATQLQSAIVKAMYAATIESELDSEKAFEYITAADNKDTPLVNMLANYARYYSTNSIKLGGVKIPHLYPGDELNLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSQVSYSSARASANESWRYFLGRRRFIAGRLATQMFSCWLEEALIRGVIRAPRARFSFWEARSSWSRSEWIGAGRMAIDGLKEVQESVMRIEAGLSTYEKELAIMGEDYQEIFRQQVRESEERRAAGLSRPVWITDTYQQQIAASRQTEEEKRAT
1087253..1088749                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage prohead protease; Lambda gpC homolog; STho1984_1031; phage(gi169257232)     0.0                 SalmonellaentericasubspentericaserovarThompsonMQRNLPHIISQATSAPLLLEPAYARVFFCALGRESGINSLHIPGNNESLDQSDMALVTGDFMATGKPQARFYQVVNGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAGAFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYAEKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAEKVARYTGLSVDAVMATEAAVYDGQAIITTGLADGMVNAADAIGVMAEAINSNKTGGTMPELSAADAVTQENQRVMGILGCPEARGHEALAQMLAGQPGMSVAQAKSILAAAAPTDTTSTADRILALEEAGGRETLAQTLAAMPEMTVEQARTILAASPIAAATSLHDAVMALDEAKGREELAEKLAVMPGMTTDQARDLLAAAPDKSGNAGLSMNNAFDAFMQSHSPGPISGGKGHSNDTETTLLMSIPGTSAT
1088762..1089109                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; STho1984_1032; phage(gi169257231)     2.53e-78            SalmonellaentericasubspentericaserovarThompsonMSFTTTIEKRADNRIFAGNDPAHTATGVSGITAATPMLTPLMLDDTTGKLVAWDGQKAGTAVGVLALELDGSENLLTYWKSGTFATESLAWPKSVDAIKQANAFAGSAVSHAALP
1089164..1090192                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; STho1984_1033; phage(gi169257230)     0.0                 SalmonellaentericasubspentericaserovarThompsonMGLFTTRQLLGYTEQKVKFNPLFLSLFFRRTVTFPTQEVMLDKITGKTPIAAYVSPVVGGKVLRNRGGETRVLRPGYVKPKHEVNYAQVVERLPGEDPARLNDPAYRRLRILTDNLKQEEKAIVQVEEMQAVSAVLNGKYTMQGEQFDTVEVDFGRSAGNNIIQATGKKWSEQDRETFDPTYDLDMYCDQASGLINIAVMDGKVWRLLNGFKLFREKLDTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVADNGTEKRYLPEGTLVLGNTAAEGIRCYGAIQDSQALAEGIVAATRYPKHWLTVGDPANEYTMTQSAPLMVLPDPDEFVIVTVG
1090250..1090615                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; STho1984_1034; phage(gi169257229)     6.12e-78            SalmonellaentericasubspentericaserovarThompsonMATKEENIQRLRELATRLGRDPDVSGSAAELSQRVMEWEEEAEAEAEHLPAVENDSDESIVPPGIGQRSERVLIRALRTLHICAIDPDSNRELDMVMAGNPARISQHDVDELIAAGLIIEL
1090626..1091003                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; STho1984_1035; phage(gi169257228)     4.57e-82            SalmonellaentericasubspentericaserovarThompsonMSQSENLFDTAISQADDAILRVMGTVATITSGVLAGATLTGVFDDPESVSYAAGGVRIEGDKPTFFVKTSLTVHLKRPDTLTILGDTFWVDRITPAGGDSSIILLGRGEPPTDNRRRTGGMFERA
1090990..1091568                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-tail assembly protein; Lambda gpZ homolog; STho1984_1036; phage(gi169257227)     1.05e-135           SalmonellaentericasubspentericaserovarThompsonMKGLENAIRNLNSLDRQMVPRASIWAVNRVAQKAVSVATRKVARETVAGDNQVRGLPLKLVRQRVRLFKAGTDGKRSARIRINRGNLPAIKLGAAQVRMSKRRGKLLYRGSVLKIGPYLFRDAFIQQLANGRWHVMRRVNGKNRYPIDVVKIPLSGPLTQAFESATQSLIDEEIPKQLGYALKQQLRLYLSR
1091565..1091966                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; STho1984_1037; phage(gi169257225)     2.90e-93            SalmonellaentericasubspentericaserovarThompsonMSKHTLIRRAVLEKLESVTGAPVTLFDGLPAFVEQEDLPAIAVWLTDAQYTGLMTDEDDWQATLHTAVFLRAQAPDTELDIWMEEKIFPALEEVSGLERLIDTMTPLGYDYQRDSEMATWGMAEITYRITYTN
1091977..1092720                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major tail subunit; Lambda gpV homolog; STho1984_1038; phage(gi169257224)     2.47e-173           SalmonellaentericasubspentericaserovarThompsonMGTPNPLVKTKGAGTTFWLYTGSGDAFKNPLADDDWLRLAGIKDLQPGEMSADAEDDDYLDDENADWKSTTQGQKSVGDTTATLAWKPGEAGQKKLVELFDTGEVRAFRIRYPNGTVDVFRGWLSSLGKTVTSKEVMTRSVKITGVGRPSLAEEDTPDVVSVSGVTVAPASATVAAGATTTLTFTVKPDNASDKTLQVATADPLIATVTLKDNVATVKGVKAGSVNIVGISSDGSLVAVAAVTVTAS
1092771..1093166                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail assembly chaperone; Lambda gpG homolog; STho1984_1039; phage(gi169257223)     2.51e-93            SalmonellaentericasubspentericaserovarThompsonMFLNTDTFNYGGHSIVLSELSALQRVDYLKFIQQRTADYDAQPETLTEAERQTEFMQMGVDINAWLVSRSLCESKKEEEARALYESVRLEWSYEALGRGADMVLSLSGMRLPASQEDDSGSEKDTTTPEKS
1093187..1093501                   PHAGE_Phage_Gifsy_1_NC_010392: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; STho1984_1040; phage(gi169257222)     2.93e-71            SalmonellaentericasubspentericaserovarThompsonMRLAREFRRPDWRQMLAEMSATELGEWAEHFGKNSFSDMLLDAEFATLKSLISGLVTGTHHDAEMFSLITDPESLHEKTDDELMILGEGITGGVRYGPDSEPGH
1093473..1096568                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; STho1984_1041; phage(gi169257221)     0.0                 SalmonellaentericasubspentericaserovarThompsonMDQIANLVIDLSIDSAEFRNEVPRIKKLLNDAAGDSERSAARMQRFLDKQTEATRRTSASLEQVTASSTAYSSAVEKSAAASTRLAADVDQTRQRVEALGRKLREEQAQSAAVAAAQDRTSAAFYRQIDSVKQLSGGLQELQRIQAQVRQAKGRGDISQGDYLALVSETARKTRELTDAEALATQKKAQFIRRLKEQTTVQGLSRTELLRVKAAELGVSSAADIYIRKLERTGTATHTLGLKSAAARRELGVLAGELARGNFGALRGSGITLANRAGWIEQLMSPKGMMLGGLAGGVAAAVYGLGKAYYEGAKESETFNKQLILTGSYAGKTTGQLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAVAMVSRTATRMQENVGQSVDETIRQFKRLRDDPVNAAKELDRTLHFLTSTQLEQIRVLGEQGRVADAAKIAMSAYSEEMNKRMGDVHDNLGWIERAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFGTSAGGSTPSGAYSSAALSVIPNADGGVYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAAGSGGMAMFAPEYNIEIHNDAGNGQIGPQALQAVYNIGKKAAIDFWQQQSRDGGIAGGGR
1096571..1096900                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tip assembly protein; Lambda gpM homolog; STho1984_1042; phage(gi169257220)     3.65e-76            SalmonellaentericasubspentericaserovarThompsonMETFNWKIRPDMTVESEPKVTSIKLGDGYEQRRPAGLNNHLAKYNVTVRIRKGEHQNLEAFLSRHGGVKSFLWTPPYTWTQIRVICRKWSISVGSLWVTVTTTFEQVVI
1096910..1097608                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tip assembly protein; Lambda gpL homolog; STho1984_1043; phage(gi169257219)     1.07e-170           SalmonellaentericasubspentericaserovarThompsonMQDISQDTLNEAAKLAQSARITLWEIDLTQSGGDRYFFCNEANEKGEAVTWQGQKYDVYPVEGSGFEMNGKGAAARPSLKVSNLYGMVTGMVEDLHSLVGATVIRRIVYARFLDAVNFQSGNQEADPEQESVSRWVIEQCSDLTAVSATFVLATPTETDGCVFPGRIMLANTCTWIYRSDECGYTGPAVADEFDNPTADPAKDACSRCARGCALRNNTGNFGGFLSINKLSQ
1097615..1098352                   PHAGE_Entero_mEp460_NC_019716: tail fiber component; STho1984_1044; phage(gi428782332)     1.85e-154           SalmonellaentericasubspentericaserovarThompsonMKEQDILAHARRCAPAESCGFVVRTQAGERYLPCVNISAAPEDYFRMAPEDWLRAETQGDIVALVHSHPGGQPYLSDVDRRLQVQSDLPWWLVCADQVHKFRCVPHLTGRQFKHGVFDCYTLFRDAYHLAGIDMPDFHRDDDWWRHGDNLYLDNLETTGFYRVSAASAQPGDVLICCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSIWRHRAWREFAFTGICNDFAAASACR
1098250..1098897                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tip assembly protein; Lambda gpI homolog; STho1984_1045; phage(gi169257217)     1.19e-153           SalmonellaentericasubspentericaserovarThompsonMATTHALHLATPGMARICLYGDLQRFCRRVSLQVASGAEAVRALAVQLPGLRQKLNDGWYQVRIAGDDVTADTLTTSLHDPLPPGAVIHIVPRLAGAKSGGVFQAVLGAALIAVAWWNPAGWLGAAAVSGMYMTGASMILGGMAQMLAPKPKMSEMRQTDNGRQNTYFSSLDNMVANGNMLPVLYGEMQVGSRVISQEVSTADEGDGGQVVVIGR
1098959..1102321                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage host specificity protein; tail fiber; Lambda gpJ homolog; STho1984_1046; phage(gi169257216)     0.0                 SalmonellaentericasubspentericaserovarThompsonMGKGGGKGHTPREAPDNLKSTQLLSVIDAISEGPIEGPVNGLHSVLVNQTPVVDRDGNTNIHGVKVVYRVGEQEQTPLEGFESSGAETVLGVQVKYDNPVTRTITAANIDRLRFTFGVQSLVEANSKGDRNPTSVRLQIHLERYGQWVVEKEITITGKTTTQYLASVIVDNLPPRPFGIRMVRVTADSTTDQLQNNTVWSSYTEIIDVRQRYPNTAVIGLQVESEQFGSQQVTRNYHFFGRIIHVPSNYDPVARTYSGIWDGTFKPAYSNNPAWCLWDVLTHPRYGMGQRIGAADVDRWALYAIGQYCDQMVPDGFGGTEPRMTFNAYLAQQRKAWDVLTDFCSAMRCMPVWNGQMMTFVQDRPSDTVWTYTRSNVVMPDEGTPFRYSFSARKDRHNAVEVNWIDPDNGWQTSTELVEDTVAISHYGRNLVKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEVCDEDYAGISLGGRILSVDRARRILTLDREITLPSSGTTLISLMDGEGLPVSVDVQSVTDGVQVQVSRIPDGVAEYSVWGLKLPSLRQRLFRCVAVRENDDGTYAITAVQHVPEKESIVDNGASFDPQPGTIHGTVPPAIQHLTTEILAEEGQYQVLARWDTPRVVKGASFSLRLNVAAEDGSDRLVSSAGTPDTQYRFRGLTPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTPGYFQITATPRQAVYDPTVQYEFWFSDAQITDIHQVENAARYLGKALYWIAASVNIRPGRDYYFYIRAVNQVGKSAFVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVELTEDNASKLQQFSKEWQDANDKWNAMWGIKIEQTKDGKYYVAGLGLSMEDMPDGKISQFLVAADRIAYINPANGNETPGFVMQGDQIIMNEAFLKYLSAPTITSGGNPPAFSLTPDGKLTAKNADISGHINAVSGSFTGEINATSGKFSGVIEAREFVGDICGSKVMQGVSIRATNDERSTSTRYTDSATYQIGKTITVMANCERNGGSGAITVTININGQVKTAEVMPYTAGIPAMYQTVVFSVYTTSPVVDISVSLRVRGQYTTEASVWPLVMVSRSGSNFTN
1102360..1102602                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; STho1984_1047; phage(gi169257215)     6.57e-52            SalmonellaentericasubspentericaserovarThompsonMTMSRVISLAAGLSLSVLFSTAAVADNGRGSGNSNIENQTRIYTGTDRGQKQHREAKGKTITRSVQCSLPAYLRDPDNQC
1102656..1105151                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; STho1984_1048; phage(gi169257320)     0.0                 SalmonellaentericasubspentericaserovarThompsonMPVLISGVLKDGTGTPIQNCTIQLKASRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATVAGQASEQAQTSAGQAAESATAAVNAAGAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADVSRTAAGDSAAAAAASATAAQTSAARAGASETAAKTSETQAASSAGDAGASVTAAAASEKAAAASAAAAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKAVMIEAQTKAPLDSPALTGTPTAPTPETTAAGIEIATAAFVAAKVAQLVGSAPEALDTLQELADALGNDPNFATTVLNKLAGKQPLDETLTALSGKSVDGLIEYVGLRETISRATGAMQKDQNLNDVPDKALARQSLQLGNSATLNVGTTLGTVAAGDDIRISSAKRAIDDTQTGLAEQPVMWISSADDLSNLPSGARRFASNKAPATILPVNDYVFLEVIAKRDCANGCVVQITDSAGNTWTGIRYDATNGSSFTWRPLMSCPPGVPLPWPSDTIPAGYALMQGQTFDKSAYPLLAVAYPSGIIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTARAQDTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA
1105151..1105732                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; STho1984_1049; phage(gi169257321)     4.08e-134           SalmonellaentericasubspentericaserovarThompsonMTFKMSEQAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETQTWSLHEDHRGEMVYDTTTGNQVYISAPGPLPENVTSVSPGGEYQKWDSKAKVWVKDEAAEKAAQLRQAEETKNRLLQIASEKIAPLQDAVDLDIATDDEKAQLDEWKKYRILVNRVDTTNPDWPEVPVNQ
1110408..1110422                   attR                                                                                 N/A                 TTATAAAAATGTAGC

#### region 2 ####
1922866..1923234                   PHAGE_Entero_HK022_NC_002166: integrase; STho1984_1868; phage(gi9634144)             8.43e-24            SalmonellaentericasubspentericaserovarThompsonMKIALPLSLNLPSMDLRLSTVIERCRLVSRSEYLISAGIRKNSPNGSIHPDSLTKKFVAARKLTGINFSENPPPFHEIRSLSGRLYKDAYGEGFAQKLLGHTSENTTKIYLDGRDEKAYMML
1923291..1923307                   attL                                                                                 N/A                 GAATACAGAAATTCGGA
complement(1923500..1923700)       hypothetical protein; STho1984_1869                                                  N/A                 SalmonellaentericasubspentericaserovarThompsonMLSPRYTTRYEDLLQVKWQVYPDFHIPDVMEPQPHRMQERAAASWRSFDSASIEWLPVAADFTCSG
1924318..1925232                   multidrug DMT transporter permease; STho1984_1870                                    N/A                 SalmonellaentericasubspentericaserovarThompsonMRKVSISILFMLVSLTWGTTWLAMRIAVETIPPVFATGMRFMFAAPFLIIIAWLRKKTLLFPPGQRLFQFVICIFYFCIPFSLMIYGETYVNSGLAAIIFANMPVAVLIASVLFLNEKAKLMQIAGLTIAITALTGILLEETNTSTESHWQGITALISAVLIHAIIYTQCKKRSCTVSVITFNALPCLLAGLILSATGWFFERPQVSTFSVHSILATLYLGAFAGVFGILCYFALQQKANAFQASLVFLIFPLIAVSLEDYIYGYAISTHSMLLIIPLVIGIFLTLVARNIPVTSRCRDNSSQK
1925371..1925523                   hypothetical protein; STho1984_1871                                                  N/A                 SalmonellaentericasubspentericaserovarThompsonMFLPFLLALSVAMGAINRKDKVSYILWAVLLIVTILSFIHHMTNSLTLSF
1925533..1926147                   disulfide bond formation protein; STho1984_1872                                      N/A                 SalmonellaentericasubspentericaserovarThompsonMKTHHHPTTLVHLINQVGLLGICVALVVAFYYQLVRHELPCPICLLQRAGLIIAGFGFLFNLCFGLRGIHYGMVIIGSILTGVMASRQICLHIMPGDTGYGSAFFGLHFYTWTLITSILIIIAVAVILAISSMNVAFRSLNINPDLFSIVGWVFLLLITANLISTVLECGGGECAANPVTYKLLSKQDIAFLKTGLLTRTVLRL
complement(1927295..1927420)       arsenic transporter; STho1984_1873                                                   N/A                 SalmonellaentericasubspentericaserovarThompsonMFANADSELILTPIIIAVLLAPGFSKSTTLAILHFFFRREK
1927988..1928188                   PHAGE_Phage_Gifsy_1_NC_010392: PagK-like protein; STho1984_1874; phage(gi169257211)     4.69e-41            SalmonellaentericasubspentericaserovarThompsonMKHVKSVFLAMVLILPSSLYPALTIAADSQDHKKEETIKPMPQKWCNLWPADIPFPEDWFKMCRGY
complement(1928285..1929166)       PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage tail assembly protein; STho1984_1875; phage(gi169257205)     5.28e-89            SalmonellaentericasubspentericaserovarThompsonMYIGPHGHVVIVDADGNAETFGLMDGGVDAAITAYFGSQLQERVQQNIIREYLGEQPVGTAFVIETGNSKHPWLVHAPTMRVPLIIDGTDAVYNATRAALLAIFQHNKSAGEDRKITSVALPAMGAGCGQVPPGQRRPANCTDIAPPDIPSSHIAVFDAETQTWSLQEDHRGETVYDTTTGNQVYISDLGPLPENVTSVSPGGGYKKWDSKAQVWMNDEAAEAAARLREAEGTKNRLLQIASEKIAPLQDGVDLDEATNKEKASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
1929636..1929827                   hypothetical protein; STho1984_1877                                                  N/A                 SalmonellaentericasubspentericaserovarThompsonMTNKKHTNHHLLKINDIKTESYNMMMMHEKSKMRQIPRRCRPVADRPAGSTFLKYEQLSTTTT
1929892..1930059                   lytic enzyme; STho1984_1878                                                          N/A                 SalmonellaentericasubspentericaserovarThompsonMKNIITIIVAIIIVFYAGMWSQKFLMEDECLDSGGSYNENGICNIAGSHQDVPPK
complement(1930316..1930849)       PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; STho1984_1879; phage(gi16765210)     1.15e-123           SalmonellaentericasubspentericaserovarThompsonMNLLSALLKRYWLQLVFILLMAGAFIAGNVWSDRGWQKKWADRDSAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAKKLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEEAKHYAGIADERYRAGMTCERVYDSVRESNNYRRH
complement(1930903..1931133)       PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage endolysin; STho1984_1880; phage(gi169257182)     1.51e-37            SalmonellaentericasubspentericaserovarThompsonMNGKKAFAPRSAKIRITGLENYTRCGVALKLDLVANPGQLELERHAARSAAWLFLTKGCLKYSGDLVRVTQIINGG
1932267..1933346                   PHAGE_Entero_HK022_NC_002166: integrase; STho1984_1882; phage(gi9634144)             6.32e-93            SalmonellaentericasubspentericaserovarThompsonMSRKKYDANLPRYLTYRKASKSFFWRNPVTDKEFPLGQIARRDAITQAIEANNFIAQNHTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITEGKKTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRTAAEHLPVWFPLAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDKAYMML
1933413..1933429                   attR                                                                                 N/A                 GAATACAGAAATTCGGA
complement(1933552..1933668)       cytoplasmic protein; STho1984_1883                                                   N/A                 SalmonellaentericasubspentericaserovarThompsonMTDKTPGFFNHLRRKLENLASSSILKGQGDLACINANF
complement(1933729..1934082)       PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; STho1984_1884; phage(gi971764937)     1.03e-11            SalmonellaentericasubspentericaserovarThompsonMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPYNS
complement(1934099..1934971)       hypothetical protein; STho1984_1885                                                  N/A                 SalmonellaentericasubspentericaserovarThompsonMLTFVWITLRFIHFASLMLVYGCALYGAWLAPASIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLAVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVVYCMCMAQGRWRQHAISAMMRFSRYGHFFVAGVLLTGIGNTLFITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
complement(1934975..1935349)       hypothetical protein; STho1984_1886                                                  N/A                 SalmonellaentericasubspentericaserovarThompsonMASSARSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
1935487..1935717                   PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; STho1984_1887; phage(gi422936677)     8.51e-23            SalmonellaentericasubspentericaserovarThompsonMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
1935825..1936481                   carbon-nitrogen hydrolase; STho1984_1888                                             N/A                 SalmonellaentericasubspentericaserovarThompsonMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKPLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
1936505..1937203                   PHAGE_Pseudo_H101_NC_029094: exodeoxyribonuclease X; STho1984_1889; phage(gi985760125)     8.55e-19            SalmonellaentericasubspentericaserovarThompsonMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLEDVQAGEQRSNGTPQ

#### region 3 ####
complement(4270730..4271458)       PHAGE_Escher_RCS47_NC_042128: baseplate hub subunit; STho1984_4104; phage(gi100101)     1.04e-38            SalmonellaentericasubspentericaserovarThompsonMIIVSVLRQSKDFTTKHAQWLHKQLKGYDSVCLTDALKIKGVNTAPLLYDWPGWWAKLELFNPLHPVLGNEDILYIDIDSVIVGDITPLTTVKKITLLNDFSQHGASVAPATGIMFIPAPAKKNVWDEFMKNPEKEINAIRTPPYHGDQGFIGRICQDAERWQNILPGRIISYKANIATPKMIGFNPELYDGTGNGKLPDGASIVCFHGSPRPWNTALPWVPYFSLKNTIQSKVKQYKLSLR
complement(4271772..4272005)       inner membrane protein; STho1984_4105                                                N/A                 SalmonellaentericasubspentericaserovarThompsonMEEEKIKLLHYLLFSISKKGNGLREYWRHEIIRSNEFLLYRLLMQANNNRRRNFLFWWRLANEMYIYGSKKQKKTGL
complement(4272197..4272652)       PHAGE_Haemop_SuMu_NC_019455: enoyl-CoA hydratase/carnithine racemase-like protein; STho1984_4106; phage(gi418489075)     3.39e-27            SalmonellaentericasubspentericaserovarThompsonMSQTTVWLACYKGRSEYRGIARFVDWLTRKVTRGIYSHCELAVAHGGNEYLCYSASFRDRGVRGKIIPLPDDKWDKLPLKATLPEVEAFFRKHNGKRYDWQGALGIALYNRERKDKLFCSEFCAEFLGLNDSWRYSPSHLYALVSSWQYDC
complement(4272649..4273254)       cytoplasmic protein; STho1984_4107                                                   N/A                 SalmonellaentericasubspentericaserovarThompsonMTKYVYYHPSTFEVIDWIDDTSLNVVLPESIKPVNDEQWKLRGKPCWICLAPFSFITTPPPGEFYQLVGDKWIYNPTAFNDALVNKKENVVLSIKAHRDTVTADYIVIDGNHFHSDANSRIQQMSLTRMGQAKQIPAGLMWQTKNNGLIELTNDIAAQFETVTMDHDMRLFANAQRHIAAVEALGDIEAVLDYDYSSGWQP
complement(4273259..4275028)       PHAGE_Entero_P88_NC_026014: tail fiber protein; STho1984_4108; phage(gi744692739)     1.79e-86            SalmonellaentericasubspentericaserovarThompsonMYNEFYTLLTDWGMAKIASALADKKQIHLQKMAVGDGGGQYYEPTASQTNLRHEVWRGEMNTLTVAPNNPNWLIAELVLPEDVGGWYVREVGVFDDEGELIAIGKFPESYKPLLPGGCGKQVCIRLIMEVSNTTAVTLTVDPSIVLATRDYVDTRLDEHEHSTNHPDATLTQKGFTQLSNATDSDDETKAATPKAVKAAMAEARNHTHTWNQITGVPDGTLTQKGIVQLSSATDSTSTTEAATPSAVKAAMDKANAAAPANHTHVWNQITGVPDGTLTQKGIVKLNSATDSTSTTEAATPSAVKAAMDKASAAAPASHTHAWGQITGTPDGTLTQKGIVKLNNATDSTSTTEAATPSAVKAAMDKANAALNLANTAASNGPRYQFFTANGTFTVPDGVTQVFVEMLGGGGGGGGGGCSPAPDKTNTFSAGRGGDHGELKIAIIGVTSKKTYTVSVGAGGSGGGGGFVPSYEDRTSIGPNGQGHTLFKGDAGEPGLDGGDSSFINISAKGGLGSSGKIAEFTSTESYPGGVGVGSAFGTGGSAAAFANGGNADGYGAGGGGGASLNQNTRSAISGYSGGRGSDGFVKISW
complement(4275031..4275663)       PHAGE_Burkho_BcepMu_NC_005882: gp51; STho1984_4109; phage(gi48696961)                2.19e-31            SalmonellaentericasubspentericaserovarThompsonMDKLLLPPPLASDERFSILANIAAERFAQIDLTALLVYLVDIVDASALPSLAGQFHVQGLEGWLFAANEQEKRELIKQAIELHKYKGTPWAVRRVLEILSLPGTISEWFEYGGKAYFFKVEIKLINQGMDENLFNNLVDLIHEYKNVRSKLEALIVWIINQSAIPVIGSALYGGEITTVLPFQVLEVQQTKPIYFGTGQWSLEITSIYPE
complement(4275656..4276771)       PHAGE_Burkho_BcepMu_NC_005882: gp50; STho1984_4110; phage(gi48696960)                1.06e-131           SalmonellaentericasubspentericaserovarThompsonMAIAEPDFIDRDPAQITSEMIAQYEEASGKKLYPAQAERLLIDLFAYRENLVRIAIQEAAKQNLVAYSRAPMLDYLGELVGVHRLPAQAAKTTLQFSVTQAAKSNLVIPQGTRASASDSVMFATDEDVLLPAGSLSVAVTATCVATGESGNNWQPAQISALVDRVGNYDLSVTNLTASSGGCGEENDDALRKRIQLAPESFSNAGSYGAYRFHTLSVSQSIIDVAVLGPDEGLAEGCVELYPLTLNGLPGPELLAQIEREVSKEKKRPLTDKVSAKCSPRVPYQIRARLTLFTTADQETTLAAAREAINTWTRSRQTRLGQDIVPNQIIKVLQVDGVYDVALDMPAKKVLQAHEWAECTAIDVTIAGVSDG
complement(4276762..4277121)       PHAGE_Burkho_BcepMu_NC_005882: gp49; STho1984_4111; phage(gi48696959)                3.63e-43            SalmonellaentericasubspentericaserovarThompsonMNTKTRPSTLHWQPALQRPEEYVCGLDDIHQAIHIILRTPRGSDPHRPLFGSNLWRYIDYPIERAIPHVVRESVEAIRMWEPRCRLLKVTPTIDGEHLTLRVQWRAADGVINSTEVLWR
complement(4277285..4278832)       PHAGE_Salmon_epsilon34_NC_011976: GtrC; putative membrane protein; STho1984_4112; phage(gi221328637)     7.59e-62            SalmonellaentericasubspentericaserovarThompsonMNTMLKILPKTAMILLAFLAIFLIEWYTPIHSDDYRYYLLGISPESHFHHYMTWSGRIIADYTSALILYTRSQLVYSISAAVSTLVFCYFIVKTPSGTLRWNKSDYLLFPLIFFTYWISNPNLGQTTFWIVGAANYLWTNLFVVAWLFFFYTITIKNSKAISPWVALLSFMAGCSNESVSPFVSLISVLAIAYELWQNKSVSRNKIVYSLCAIAGSCVLILSPGNFIRASGKEFWYGRPIFERIFIHLTERVHNHLALIWIAYVVLLLLVLLVIFNKQIRAKIDKTSLICAALVVCIGIGTSLIMFASPSYPDRVMNGTFMFFLLAISFIAYALLKSGVKAGVVGVTAVTVLCGIVFLWSYSLMLNGYKKTAGQEIVRQKIITKEIAAGKQKFIIPDYYFVKLQNSGGHFGLFHDPAVYGEYYHVQAIFKKKVNFDYSVIANGAKHSLSNETTAYSNTRGDFAIISREQLTGSITLSVNGRQKTIPVEKMKHAEINDEFWYYASVDKGEITAISF
complement(4278832..4279761)       PHAGE_Entero_SfV_NC_003444: bactoprenol glucosyltransferase; STho1984_4113; phage(gi19549012)     0.0                 SalmonellaentericasubspentericaserovarThompsonMKISLVVPVFNEEDAIPIFYKTVREYSSLKPYDVEIIFVNDGSHDATESIISALAVADPLVVPISFTRNFGKEPALFAGLDHATGDVVIPIDVDLQDPIEVIPHLINKWQAGAEMVLAKRIDRSTDGHLKRKSAEWFYRLHNKISTPKIEENVGDFRLMSREIVENIKLLPERNLFMKGILSWVGGQTDVVEYARAERVAGNSKFNGWKLWNLALEGITSFSTFPLRIWTYIGVSVSALSLIYAMWMIIDKLMWGNPVPGYPSLMTAILFLGGIQLIGIGIMGEYIGRVYTEVKQRPRYIVKNKKTMME
complement(4279758..4280120)       PHAGE_Entero_SfV_NC_003444: putative flippase; STho1984_4114; phage(gi19549013)      5.19e-60            SalmonellaentericasubspentericaserovarThompsonMIKLFIKYVSIGVLNTALHWAIFALCVYGFQTSQALANVTGFAVAVSFSFFANARFTFGASVSTGRYLLYVGFMGVLSAVVGWTGDKCAMPPIFTLIVFSAISLICGFLYSRFIVFRNEK
complement(4280448..4281170)       PHAGE_Burkho_BcepMu_NC_005882: gp48; STho1984_4115; phage(gi48696958)                2.39e-39            SalmonellaentericasubspentericaserovarThompsonMKGVTRQTGIISDIDEAVVRVRVTLPECDNLRSNWLAVLQRNTQDNKDYWLPDIGEQVEVLLDDNGEDGVVLGAVYSSVDTAPLASRDKRYVQFSDGAAFEYDRALHQLTVNGGIEKIVIEVKERTQLTSPQVEVRAQHVTVISETVDVAATSVGVKAVDVNVEASHTGIKALNVTVDAPLSTFTGDVTVMKKLTWLGGMAGSGGIGNSAVITGNVNVLGNVNASGTLMDNGGNSNHHSH
complement(4281180..4282223)       PHAGE_Burkho_BcepMu_NC_005882: tail protein; STho1984_4116; phage(gi48696957)        4.99e-102           SalmonellaentericasubspentericaserovarThompsonMAEITVSGGVFATLTPIFTLWYGHKEITYDIAPYVTSISYSDSIKNESDVIAIALEDSAGRWVNEWYPGKGDTLALRLGYQGEDLLDCGIYIIDKIDISAPPSTVNIDGIATSVSKALRTKNSQGFEETTLSAIASRIAQKHGLTLAGKIAPLTIDRVTQYAETDVAFLKRLASEYGYTVKVTATELIFSHLPTLRCLAPVKTLRRTDISHYTFKDTINRIYKNATVQHQNSKQKELVIYTHDSQEKAPARGSATSADTLKINSRAPDTGAAQAKANAALDSHNEYQQTGTLSMMGCPQLTAGNKIELSDFGVLSGQWLIDKSMHKLTRSGGYTTEIDISRGPATSQ
complement(4282211..4282420)       PHAGE_Burkho_BcepMu_NC_005882: gp46; STho1984_4117; phage(gi48696956)                1.76e-22            SalmonellaentericasubspentericaserovarThompsonMRYLEHVTTDGERWDNLAWRYYGDALAYERIIAANPHVAIMPVLPSGVRLIIPVISVTQTTPKLPPWLR
complement(4282420..4283373)       PHAGE_Burkho_BcepMu_NC_005882: gp45; STho1984_4118; phage(gi48696955)                2.35e-50            SalmonellaentericasubspentericaserovarThompsonMYAVLGEIEFDVVAYWDEFESTMGVDYTSHARIEGKPGVQFIGDKLDKITLKFNFHSQYCQPTTELNRLREAMTAHQAMALVFGNGDYRGWFVITDLTATHQHTDPYGNVIAQGGSLSLQEYTGDPKSPLLPPAITTQEPNIDEMLDELPDVSDSWFDELMSAVEEGMREAKEMMDEVADAIDDIKKTIAQAKELVKEAKALKEKCGDIVDSLKKTISAIDALFQQPLDLQTLAGLPKALAAKMQELIDSLPGIRECAGDAGTLIEHAESLFDAITSSVAEATYDSAATLVNQARGTLQTSAPDVSQLAAADITRSL
complement(4283373..4285727)       PHAGE_Burkho_BcepMu_NC_005882: gp44; STho1984_4119; phage(gi48696954)                3.03e-58            SalmonellaentericasubspentericaserovarThompsonMANDIITQLQARNETLTQAIARYGSLNASTLHTLSFEQTKITRLTQQLANSALRREENDKQRAGLLEKTQTFAGQLGKLLNVETPDWKLPYEFQGNMVDMAAKGGMDNTARDALSLNIRDWSLDFNQDQKDLQSAAATMIEGGVSALQDLSRYMPDIAKAATASRDSAQSWAQAALATRDKLNIAPDDFRFAQNMLYSVAKSGGGSVAEQTQWINAFAGKTGAQGKEGIAELTATMQVAMKNAPDAGAAAANFDHFLKSTFSKETDSWFARQGVDLQGSLLEHQQNGIGVTEAMAHIVQMQLEKMNPQILDTFRQTMKIEDLSARGDALQAMTEKFNLGAMFGDAQTRDFLAPMLANMVEYRQLKASAMQAAGQHFIDDDFAVKMTSPGEQTKALQLSLNDLWLTVGMELMPAIGELAQSITPLVRQFSAWLRENPALVQGVAKVVGVIWLFNGALNILRLGANLIASPFIRLIDIFLKVKAGLALGGGSRALSVLKSFGNGAKGLTVLLGNGLIKGLRLVGQAFIWLGRALLMNPVGLTITAIAGAAYLLYRYWEPISGFFAGVWERIKTAFDGGIAGVTRLILDWSPLGLFYRAFASVLDWFGIELPASFSEFGGNILDSLINGILNALPFLNGAIEKIKALIPDWAKSALGISTEMPSVAAAVPGIAGTMVAQQASAPLASGAKAVTTSAKTMASPQPMKTKSAATPPTPAALPGKSGGKPYTLPSRAQSNVQVHFSPQVTVQGSGANAAKDINNVLSLSKRELERMINDVMAQQRRREYA
complement(4285912..4286229)       PHAGE_Burkho_BcepMu_NC_005882: gp41; STho1984_4120; phage(gi48696951)                4.89e-10            SalmonellaentericasubspentericaserovarThompsonMNEKYTLQFPFTSAAGERIDVLQLRRLKVKDMRAARRASDKPEEWDEPLMAAMTGLVTEDLAEMDLLDYQALQKRFQAMLSMATEPTATVAGNGAAGEVVSFSAQ
complement(4286281..4286805)       PHAGE_Burkho_BcepMu_NC_005882: gp40; STho1984_4121; phage(gi48696950)                6.46e-90            SalmonellaentericasubspentericaserovarThompsonMAGKIQINRITNANIYLDGNNLLGRASEIKLPDISMIMQEHKALGMVGKIELPAGFDKLEGEIKWNSFYHDVMRKTANPWQAVALQCRSSIDCYNSQGKADQLALVTHMTVMFKKNPLGTFKQNENPEFSSAFGCTYIKQVVDGETLLELDYLANIFRVNGADQLNAYRNNIGG
complement(4286805..4288232)       PHAGE_Burkho_BcepMu_NC_005882: major tail sheath protein; STho1984_4122; phage(gi48696949)     0.0                 SalmonellaentericasubspentericaserovarThompsonMAANYLHGVETIEIETGPRPVKAVKSAVIGLIGTAPCGPVNQPTLCLSESDAAQFGPGLANFTIPQALKAIYDHGAGTVVVINVLNPAVHKSTIPSETVKVDDNGQIQLKHGAVQTMNIGRSTNAGNAYIKGTDYTIDMLTGKITCMGTNLKPGVQAYVNYTYADPTKVTAADIVGAVNTAGDRTGMKLLQDTWNQFGFYAKILIAPVFCTQNSVAVKLIAQAEALGAITYIDAPIGTTFQQVLAGRGPQGAINFNTSSDRARLCYPHVKVYDSATNSEVLEPLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITGVERSLSAMIDDPQTEVNQLNENGITTIFNSYGSGLRLWGNRTAAWPTVTHMRNFENVRRTGDVINESIRYFSQQYMDMPINQALIDALTESVNTWGRKLIADGALLGFECWYDPARNEQTELAAGHLLLSYKFTPPPPLERLTFETEITSEYLVSLESNR
complement(4288222..4288419)       PHAGE_Burkho_BcepMu_NC_005882: gp38; STho1984_4123; phage(gi48696948)                2.55e-11            SalmonellaentericasubspentericaserovarThompsonMKYIYSGPASGVTLADGQEVLLWPNSEISLPEDNEWVITMIARRHLVPVVTQEVETNEEEIVHGS
complement(4288416..4288871)       PHAGE_Burkho_BcepMu_NC_005882: gp37; STho1984_4124; phage(gi48696947)                3.09e-15            SalmonellaentericasubspentericaserovarThompsonMETLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQESKDSPLLTIVNYEEIQ
complement(4289032..4289346)       PHAGE_Burkho_BcepMu_NC_005882: gp25; STho1984_4125; phage(gi48696935)                1.74e-28            SalmonellaentericasubspentericaserovarThompsonMKLSIDFWEVISLLLSFVGLMFAAGKLLLAQIEKRLNERFEALEVARRESEAGWSRLEREFLEFRADLPLHYVRRDDYLRGQAVLEAKLDALYSKIELIQRGNL
complement(4289359..4289964)       PHAGE_Pseudo_B3_NC_006548: endolysin; STho1984_4126; phage(gi56692593)               4.53e-72            SalmonellaentericasubspentericaserovarThompsonMRYQYVCLVCAMTFLSADAAEPPRASLPWRNELIRTAREIWGLNAPVADFAGQLHQESGWAPDARSPAGAQGMAQFMPATAKWVSQLYPELRENKPFNPSWAIRALVQYDHQLWKSLPAKDNCQRMAFTLSAYNGGQGWVNRDKKLAAAKGLDASIWFEHVERVNAGRSAANWRENRHYPEAILYQHASRYLQWGQASCLY
complement(4289967..4290254)       PHAGE_Burkho_BcepMu_NC_005882: gp21; STho1984_4127; phage(gi48696931)                4.03e-14            SalmonellaentericasubspentericaserovarThompsonMRKIIVPRLSGWLIASVVLFALIGWTSSAQIPVVIYKLSLVSLSAVLGYWLDRSLFPWARPDSFCPWEESLCCAAAMIRRAIIVAAICLAVALGL
4290831..4291178                   PHAGE_Burkho_BcepMu_NC_005882: gp01; STho1984_4128; phage(gi48696911)                2.55e-30            SalmonellaentericasubspentericaserovarThompsonMIQKSKEMVRLPEIINDLAFHASQVLIESMNIDSASAENAGQAIADRMMRNWGGQSIYFPKGISGRASERDYQIYSECDGRNYAELAKKYNLTLQWIYKIVKRVHTEKQHQRRML
