gi|00000000|ref|CP012650.1|  Lactobacillus plantarum strain HFC8, complete genome. 3067675, gc%: 44.78%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
839929..839940                     attL                                                                                 N/A                 ACTAAAGCCGTC
                                   PHAGE_Staphy_phiPV83_NC_002486: transposase; AN634_04110; phage(gi9635740)           5.44e-64            
complement(849036..849194)         cytochrome D ubiquinol oxidase; AN634_04120                                          N/A                 [Lactobacillusplantarum]
849323..849334                     attL                                                                                 N/A                 AATCGTGGAAGA
complement(849464..850603)         PHAGE_Clostr_phiCT9441A_NC_029022: XRE family transcriptional regulator; AN634_04125; phage(gi971821672)     4.80e-40            [Lactobacillusplantarum]
complement(850609..851289)         hypothetical protein; AN634_04130                                                    N/A                 [Lactobacillusplantarum]
complement(851264..851509)         hypothetical protein; AN634_04135                                                    N/A                 [Lactobacillusplantarum]
complement(852739..853116)         PHAGE_Staphy_DW2_NC_024391: holin; AN634_04145; phage(gi658608090)                   4.73e-06            [Lactobacillusplantarum]
                                   PROPHAGE_Escher_CFT073: transposase; AN634_04160; phage(gi26246249)                  1.90e-63            
complement(856630..857811)         PHAGE_Lister_LP_030_3_NC_024384: putative tail endopeptidase; AN634_04165; phage(gi658607677)     7.21e-20            [Lactobacillusplantarum]
complement(857808..858704)         PHAGE_Staphy_StB20_NC_019915: tail protein; AN634_04170; phage(gi431809781)          4.57e-15            [Lactobacillusplantarum]
complement(858714..863099)         PHAGE_Lactob_phiAT3_NC_005893: putative minor tail protein; AN634_04175; phage(gi48697271)     4.84e-65            [Lactobacillusplantarum]
complement(863099..863335)         hypothetical protein; AN634_04180                                                    N/A                 [Lactobacillusplantarum]
complement(863428..863916)         PHAGE_Staphy_CNPx_NC_031241: hypothetical protein; AN634_04185; phage(gi100014)      4.12e-05            [Lactobacillusplantarum]
complement(863934..864494)         phage tail protein; AN634_04190                                                      N/A                 [Lactobacillusplantarum]
complement(864506..864892)         hypothetical protein; AN634_04195                                                    N/A                 [Lactobacillusplantarum]
complement(864894..865448)         phage tail protein; AN634_04200                                                      N/A                 [Lactobacillusplantarum]
complement(865438..865812)         hypothetical protein; AN634_04205                                                    N/A                 [Lactobacillusplantarum]
complement(865766..866131)         PHAGE_Lactob_CL2_NC_028835: DNA packaging minor head protein; AN634_04210; phage(gi971748020)     1.27e-10            [Lactobacillusplantarum]
complement(866146..867195)         PHAGE_Entero_phiFL3A_NC_013648: coat protein; AN634_04215; phage(gi281416261)        1.21e-57            [Lactobacillusplantarum]
complement(867212..867859)         PHAGE_Lactob_ATCC8014_NC_019916: scaffold protein; AN634_04220; phage(gi431809801)     6.12e-06            [Lactobacillusplantarum]
complement(867957..868901)         PHAGE_Strept_EJ_1_NC_005294: minor head protein; AN634_04225; phage(gi39653715)      4.12e-08            [Lactobacillusplantarum]
complement(868904..870568)         PHAGE_Entero_phiFL2A_NC_013643: portal protein; AN634_04230; phage(gi281416526)      5.04e-72            [Lactobacillusplantarum]
complement(870561..871859)         PHAGE_Staphy_Ipla88_NC_011614: putative terminase large subunit; AN634_04235; phage(gi215401206)     2.27e-136           [Lactobacillusplantarum]
complement(872064..872573)         PHAGE_Lactob_phig1e_NC_004305: putative terminase small subunit; AN634_04240; phage(gi23455798)     5.13e-65            [Lactobacillusplantarum]
complement(872614..872883)         PHAGE_Brevib_Sundance_NC_028749: hypothetical protein; AN634_04245; phage(gi971482660)     2.30e-16            [Lactobacillusplantarum]
complement(873420..873492)         tRNA                                                                                 N/A                 GTGGCCTTAGCTCAGTTGGTAGAGCGCCTGACTGTTAATCAGGTTGTCGCTGGTTCGAGTCCAGCAGGCTACG
complement(873615..874076)         PHAGE_Lactob_phig1e_NC_004305: hypothetical protein; AN634_04255; phage(gi23455797)     4.23e-27            [Lactobacillusplantarum]
complement(874453..874893)         PHAGE_Lactob_LP65_NC_006565: hypothetical protein; AN634_04260; phage(gi56693199)     1.63e-56            [Lactobacillusplantarum]
complement(874890..875099)         hypothetical protein; AN634_04265                                                    N/A                 [Lactobacillusplantarum]
complement(875092..875523)         PHAGE_Lactob_LP65_NC_006565: hypothetical protein; AN634_04270; phage(gi56693063)     3.77e-54            [Lactobacillusplantarum]
complement(875837..876052)         PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; AN634_04275; phage(gi100049)      1.16e-11            [Lactobacillusplantarum]
complement(876663..876860)         PHAGE_Lactob_phig1e_NC_004305: hypothetical protein; AN634_04280; phage(gi23455788)     7.70e-22            [Lactobacillusplantarum]
complement(876857..877276)         PHAGE_Lister_B054_NC_009813: gp57; AN634_04285; phage(gi157325341)                   1.74e-32            [Lactobacillusplantarum]
complement(877269..877802)         PHAGE_Lactob_phig1e_NC_004305: hypothetical protein; AN634_04290; phage(gi23455787)     1.69e-47            [Lactobacillusplantarum]
complement(877799..878086)         hypothetical protein; AN634_04295                                                    N/A                 [Lactobacillusplantarum]
complement(878083..879015)         PHAGE_Lactob_iLp84_NC_028783: DnaD domain-containing protein; AN634_04300; phage(gi971743106)     6.56e-77            [Lactobacillusplantarum]
complement(880075..880608)         PHAGE_Lactob_Sha1_NC_019489: phage protein; AN634_04310; phage(gi418489843)          6.58e-74            [Lactobacillusplantarum]
complement(881107..881619)         PHAGE_Lactob_LBR48_NC_027990: putative transcription regulator; AN634_04315; phage(gi937456713)     4.07e-40            [Lactobacillusplantarum]
complement(881687..881992)         hypothetical protein; AN634_04320                                                    N/A                 [Lactobacillusplantarum]
complement(882199..882495)         hypothetical protein; AN634_04325                                                    N/A                 [Lactobacillusplantarum]
complement(882495..882701)         PHAGE_Sulfit_pCB2047_A_NC_020858: XRE-like HTH transcriptional regulator; AN634_04330; phage(gi472341910)     4.37e-09            [Lactobacillusplantarum]
                                   PHAGE_Brevib_Osiris_NC_028969: hypothetical protein; AN634_04335; phage(gi971761833)     1.07e-10            
                                   PHAGE_Staphy_JS01_NC_021773: hypothetical protein; AN634_04340; phage(gi526003585)     2.08e-21            
complement(883468..883650)         hypothetical protein; AN634_04345                                                    N/A                 [Lactobacillusplantarum]
complement(883727..883954)         hypothetical protein; AN634_04350                                                    N/A                 [Lactobacillusplantarum]
complement(883951..884178)         PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; AN634_04355; phage(gi100038)     4.01e-07            [Lactobacillusplantarum]
                                   PHAGE_Lactob_phig1e_NC_004305: repressor; AN634_04360; phage(gi23455773)             1.65e-17            
                                   PHAGE_Lactob_phig1e_NC_004305: hypothetical protein; AN634_04365; phage(gi23455774)     6.31e-11            
885895..885968                     tRNA                                                                                 N/A                 GGACCTTTAGCTCAGTTGGTTAGAGCAGACGGCTCATAACCGTCCGGTCGTTGGTTCGAGCCCAACAAGGTCCA
885974..886044                     tRNA                                                                                 N/A                 GCGAGTGTAGTTTAGTGGTAAAACGACAGCCTTCCAAGCTGTAGTCGCGGGTCCGATTCCCGTCACTCGCT
                                   PHAGE_Staphy_37_NC_007055: ORF031; AN634_04390; phage(gi66395758)                    2.77e-13            
                                   PROPHAGE_Escher_CFT073: transposase; AN634_04400; phage(gi26246249)                  2.21e-63            
                                   PHAGE_Lactob_LBR48_NC_027990: putative integrase; AN634_04405; phage(gi937456703)     8.74e-53            
890182..890193                     attR                                                                                 N/A                 AATCGTGGAAGA
892048..892059                     attR                                                                                 N/A                 ACTAAAGCCGTC

#### region 2 ####
complement(893158..893661)         PROPHAGE_Xantho_33913: IS1480 transposase; AN634_04440; phage(gi21231089)            4.35e-54            [Lactobacillusplantarum]
complement(893619..893957)         PROPHAGE_Shewan_MR-1: ISSod6, transposase; AN634_04445; phage(gi24374783)            3.01e-05            [Lactobacillusplantarum]
complement(894203..894472)         PHAGE_Lactob_Sha1_NC_019489: phage protein DNA packaging protein; AN634_04450; phage(gi418489807)     1.69e-07            [Lactobacillusplantarum]
894541..894612                     tRNA                                                                                 N/A                 TGCTCGGTAGTTCAGCGGTAGAATAATTGACTGTTAATCAAGAGGTCGCTGGTTCGATCCCAGCCCGAGCAG
complement(894882..896462)         PHAGE_Staphy_13_NC_004617: head protein; AN634_04460; phage(gi29028700)              4.51e-44            [Lactobacillusplantarum]
complement(896452..897558)         PHAGE_Staphy_StB20_NC_019915: portal HK97 family; AN634_04465; phage(gi431809767)     1.25e-59            [Lactobacillusplantarum]
complement(897559..897759)         hypothetical protein; AN634_04470                                                    N/A                 [Lactobacillusplantarum]
complement(897713..899416)         PHAGE_Strept_315.2_NC_004585: hypothetical protein; AN634_04475; phage(gi28876230)     1.93e-133           [Lactobacillusplantarum]
complement(899413..899886)         PHAGE_Strept_315.2_NC_004585: hypothetical protein; AN634_04480; phage(gi28876231)     2.85e-15            [Lactobacillusplantarum]
complement(900502..900891)         PHAGE_Staphy_Pvl108_NC_008689: phage endonuclease; AN634_04485; phage(gi119443688)     2.11e-22            [Lactobacillusplantarum]
complement(900884..901222)         PHAGE_Lactob_Sha1_NC_019489: phage head-tail adaptor; AN634_04490; phage(gi418489808)     5.80e-12            [Lactobacillusplantarum]
complement(901232..901414)         hypothetical protein; AN634_04495                                                    N/A                 [Lactobacillusplantarum]
complement(901438..901857)         hypothetical protein; AN634_04500                                                    N/A                 [Lactobacillusplantarum]
complement(901980..903374)         PHAGE_Staphy_2638A_NC_007051: ORF003; AN634_04505; phage(gi66395453)                 3.47e-79            [Lactobacillusplantarum]
complement(903374..904174)         PHAGE_Lactoc_bIL310_NC_002669: hypothetical protein; AN634_04510; phage(gi13095885)     7.82e-20            [Lactobacillusplantarum]
complement(904171..904389)         hypothetical protein; AN634_04515                                                    N/A                 [Lactobacillusplantarum]
complement(904670..904849)         PHAGE_Lactob_Sha1_NC_019489: prophage Lp3 protein 4-like protein; AN634_04520; phage(gi418489838)     3.69e-08            [Lactobacillusplantarum]

#### region 3 ####
                                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; AN634_14005; phage(gi371496158)      2.85e-05            
complement(2954517..2954589)       tRNA                                                                                 N/A                 GCGGTAGTGGCGAAGTGGTTAACGCACCGGATTGTGGCTCCGGCACGCGTGGGTTCGATTCCCACCTACCGCC
2954971..2954989                   attL                                                                                 N/A                 CTAATTATGCCCCAGGCAG
complement(2955106..2956242)       PHAGE_Lactob_Sha1_NC_019489: phage integrase; AN634_14015; phage(gi418489824)        0.0                 [Lactobacillusplantarum]
                                   PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; AN634_14025; phage(gi100026)      5.24e-12            
complement(2957466..2957780)       hypothetical protein; AN634_14030                                                    N/A                 [Lactobacillusplantarum]
complement(2957832..2957917)       tRNA                                                                                 N/A                 GCGAGCGTAGTTCAACGGTAGAACGGTACTCCTTTGAGTTGCTAACTAGATACTTTCAGATGCAGGTTCGACTCCTGCCGCTCGCG
complement(2957944..2958258)       PHAGE_Lactob_Sha1_NC_019489: hypothetical protein; AN634_14040; phage(gi418489826)     1.70e-70            [Lactobacillusplantarum]
complement(2958251..2958664)       PHAGE_Lactob_Sha1_NC_019489: hypothetical protein; AN634_14045; phage(gi418489827)     1.17e-95            [Lactobacillusplantarum]
complement(2958788..2959453)       PHAGE_Brocho_NF5_NC_015252: gp28; AN634_14050; phage(gi327197613)                    2.79e-67            [Lactobacillusplantarum]
                                   PHAGE_Strept_20617_NC_023503: cro-repressor; AN634_14055; phage(gi588295085)         2.95e-09            
                                   PHAGE_Lactob_Sha1_NC_019489: phage-related antirepressor; AN634_14060; phage(gi418489833)     2.11e-74            
complement(2960756..2961040)       PHAGE_Staphy_phiETA2_NC_008798: hypothetical protein; AN634_14065; phage(gi122891735)     2.12e-25            [Lactobacillusplantarum]
complement(2961210..2961689)       hypothetical protein; AN634_14070                                                    N/A                 [Lactobacillusplantarum]
                                   PHAGE_Lactob_Sha1_NC_019489: hypothetical protein; AN634_14075; phage(gi418489836)     1.17e-62            
                                   PHAGE_Lactob_Sha1_NC_019489: hypothetical protein; AN634_14080; phage(gi418489839)     4.80e-48            
                                   PHAGE_Lactob_Sha1_NC_019489: hypothetical protein; AN634_14090; phage(gi418489846)     2.98e-154           
                                   PHAGE_Entero_vB_IME197_NC_028671: replication initiation protein; AN634_14095; phage(gi966198985)     8.54e-62            
                                   PHAGE_Lactob_Sha1_NC_019489: DNA replication protein; AN634_14100; phage(gi418489789)     2.25e-177           
                                   PHAGE_Lister_A006_NC_009815: gp22; AN634_14110; phage(gi157325437)                   8.62e-31            
                                   PHAGE_Lactob_Sha1_NC_019489: hypothetical protein; AN634_14115; phage(gi418489790)     3.62e-64            
                                   PHAGE_Geobac_E3_NC_029073: hypothetical protein; AN634_14120; phage(gi985758409)     4.50e-06            
                                   PHAGE_Strept_MM1_NC_003050: putative DNA methylase; AN634_14125; phage(gi15088756)     2.08e-111           
                                   PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; AN634_14130; phage(gi226377807)     3.97e-15            
                                   PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; AN634_14135; phage(gi195661249)     5.23e-23            
2969769..2969841                   tRNA                                                                                 N/A                 GTGGCCTTAGCTCAGTTGGTAGAGCGCCTGACTGTTAATCAGGTTGTCGCTGGTTCGAGTCCAGCAGGCTACG
                                   PHAGE_Lactob_Sha1_NC_019489: HNH nuclease; AN634_14160; phage(gi418489799)           1.88e-22            
                                   PHAGE_Lactob_Sha1_NC_019489: restriction endonuclease; AN634_14165; phage(gi418489800)     5.05e-107           
                                   PHAGE_Lactob_Sha1_NC_019489: P27 family phage terminase small subunit; AN634_14175; phage(gi418489801)     3.40e-106           
                                   PHAGE_Lactob_Sha1_NC_019489: phage terminase-like protein large subunit; AN634_14180; phage(gi418489802)     0.0                 
                                   PHAGE_Lactob_Sha1_NC_019489: phage head-tail joining protein; AN634_14185; phage(gi418489803)     2.31e-36            
                                   PHAGE_Lactob_Sha1_NC_019489: phage portal protein; AN634_14190; phage(gi418489804)     0.0                 
                                   PHAGE_Lactob_Sha1_NC_019489: protease subunit of ATP-dependent Clp protease; AN634_14195; phage(gi418489805)     4.83e-170           
                                   PHAGE_Lactob_Sha1_NC_019489: HK97 family phage major capsid protein; AN634_14200; phage(gi418489806)     0.0                 
                                   PHAGE_Lactob_Sha1_NC_019489: phage protein DNA packaging protein; AN634_14205; phage(gi418489807)     5.17e-60            
                                   PHAGE_Strept_Sfi19_NC_000871: putative head-tail joining protein; AN634_14210; phage(gi9632902)     1.27e-17            
                                   PHAGE_Strept_DT1_NC_002072: putative tail component protein; AN634_14215; phage(gi9632427)     1.06e-31            
                                   PHAGE_Strept_Sfi21_NC_000872: putative tail component protein; AN634_14220; phage(gi9632947)     5.34e-18            
                                   PHAGE_Lactob_Lc_Nu_NC_007501: major tail protein; AN634_14225; phage(gi78000030)     3.32e-29            
                                   PHAGE_Lactob_Sha1_NC_019489: hypothetical protein; AN634_14235; phage(gi418489813)     2.47e-07            
                                   PHAGE_Strept_DT1_NC_002072: putative tail component protein; AN634_14240; phage(gi29165636)     0.0                 
                                   PHAGE_Lactob_Sha1_NC_019489: minor structural protein gp75-like protein; AN634_14245; phage(gi418489815)     0.0                 
                                   PHAGE_Lactob_Sha1_NC_019489: minor structural protein gp89-like protein; AN634_14250; phage(gi418489816)     0.0                 
                                   PHAGE_Lactob_LP65_NC_006565: tail fiber; AN634_14255; phage(gi56693145)              3.49e-132           
                                   PHAGE_Lactob_Sha1_NC_019489: prophage Lp2 protein 53-like protein; AN634_14265; phage(gi418489820)     1.15e-83            
                                   PHAGE_Lactob_LfeSau_NC_029068: hypothetical protein; AN634_14270; phage(gi985757750)     6.62e-30            
                                   PHAGE_Lactob_Sha1_NC_019489: endolysin; AN634_14275; phage(gi418489821)              0.0                 
                                   PHAGE_Lactob_Sha1_NC_019489: phage-related holin; AN634_14280; phage(gi418489822)     6.93e-55            
                                   PHAGE_Staphy_DW2_NC_024391: holin; AN634_14285; phage(gi658608090)                   2.38e-06            
2998645..2998663                   attR                                                                                 N/A                 CTAATTATGCCCCAGGCAG
