gi|00000000|ref|CP013737.1|  Herbaspirillum rubrisubalbicans M1, complete genome. 5611261, gc%: 61.53%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1641297..1641374                   attL                                                                                 N/A                 TTCGAATCCCCCCCTCTCCGCCAGAACAGAACGCCTAACCTATTGATTTTCAATGGTTAGGCGTTTTTTTATGTCTCA
complement(1641486..1642640)       PHAGE_Cronob_phiES15_NC_018454: putative integrase; Hrubri_1393; phage(gi401817566)     3.92e-68            HerbaspirillumrubrisubalbicansM1MGRNGTGVVAASETSIEITFTYRGKRCRERIKLAPTPANMKRAAQHRAAILDAIQKQTFEYRVTFPDSPRAAYFAERKGEILTVEKYLDSWLDAQRSHLKASTYDGYRKVVNNHLIPAFGTTKLSDLNRKAIKDWCSSQQTSLKAIKNRLSVLRSALNSAAQDELIDTNPLYGWQWKSRAVVKTEDDVDPFSANEQQQILSCMEGQDRNMFKFAFWTGLRTSELIAIEWSDVDWHRKTVQVRRALTRAAIANKSDAEPPKTRAGKRDVKLLAPALEALESQKAHTLGKTDFIFTNPRTGKRWSGDLVVRSAWKRAIHAAKVRYRRPYQTRHTYASMMLTAGESPMWVAQQMGHSDWTMIARVYGRWIKDAQPDAGSKAVQMFSR
complement(1642863..1643228)       hypothetical protein; Hrubri_1394                                                    N/A                 HerbaspirillumrubrisubalbicansM1MNTPVKFDVIATTSSKPRDFVMQPPQSLDRITFNTPDDGVLAGYVSVIRQHLGNGQRFAWVELDNEPVGLFRGVPLADILTCDDAGIGRRHSNSREESRRLCLSDYSGTLADRLRLGEAPK
complement(1643368..1645419)       PHAGE_Entero_phiT5282H_NC_049429: hypothetical protein; Hrubri_1395; phage(gi100019)     5.11e-76            HerbaspirillumrubrisubalbicansM1MQYRKVDAKTRRQHRAFTESPQFARELARIPLKWRGRVVSEALELMSVWHWRRIFEPVAVEFVRDFAEKYVPAGIDLSQDDADICATAEKAADNVKKMLWKAISDTHARDIIEQECSDYGIDVPEVDDDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVLSRLAQNKRNAAALEATIVRNEAGQEFSIAELAEKTTANKTIRRGELMLRINGFEMIARECNDQGLFLTWSCPSRFHATLHTGKPNPKYDGSDPRTANKYLGKMTALARSALARRGIGLYGFRIAEPHHDGCPHWHMLVFVRALPGYTTPHVKDVASRAIRIMKRYAWRVDRGEPGAFKRRLDVKRIDWSKGSAAGYIAKYVAKNIDGVADHKTKEGYVVTTDTAGDYELTPSARVEAWAARWGIRQFQQWGGAPVSVWRELRRVPAEMVQEAPPAMAAAWDAVQKIEGEKRACWASYLRAQGGAIVKRDDLMVTLAKETKTVTGRYEECERVMPYGVQCRQMAGVVFKSVRHTWTPVQGHDARASAGSGFPWTRVNNCTQPAGHDFAADVSFEPKASPAPVMFKPDQAAQINHAWLALGACPWPRPVVDDMPTWPGPAVTADEQRRALAAWDAIKACPWPRVVPVPDKSPRRGTPRQVADWRAGRLDVTELPIDLNPTKGNAP
complement(1646137..1646397)       PHAGE_Ralsto_RsoM1USA_NC_049432: DNA adenine methyltransferase; Hrubri_1396; phage(gi100041)     5.96e-12            HerbaspirillumrubrisubalbicansM1MRVISLPCPHCQSPVRAAKSRTMSSMMKEITYQCQNVECGHTFVATLEVSRTVSMSAMPNPEVRIPISSRAFLAAKNQMTLDLATA
complement(1646623..1646820)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1397; phage(gi100039)     3.81e-13            HerbaspirillumrubrisubalbicansM1MYPDPKRVRQHRHMLRLDDYEQALVESLAHYQGEPVATILRQLALRQAAAILASDTGSSVARGPF
1647099..1647548                   PHAGE_Burkho_AP3_NC_047752: hypothetical protein; Hrubri_1398; phage(gi100039)       1.35e-27            HerbaspirillumrubrisubalbicansM1MSNCFCVFMNTIGERLKAERTRLGFNQTEFAAVGGVQRRAQLFYEQDERRPDAGYLQAVSRLGVDVQFVVTGTPSMQALTPEEAQLLDGFRKLDIKNKARVLGVIEGAAPIESPRAIVTVGGNIGQQIHGDVHGTVQGPDMRKKIIKKK
1647663..1648328                   PHAGE_Ralsto_RsoM1USA_NC_049432: holin; Hrubri_1399; phage(gi100034)                 3.70e-16            HerbaspirillumrubrisubalbicansM1MSEKVEVSGDIAQFIGGSVNEAPRQNNVVNFHLGTERAIEEKLTELQRKRISELVKQLCASTQEEPLDIYRVILTDFGAERMKDMPRTKYHAIVSQLRHWIHENNDGAQKIEEMPTLTSPSESLRESTSSSQQCRTCAEKDSSYTRLLRLSRGQWILLGILSIAVSLLLYMTPNDSFSSTNDRCFYDGKPYSAGSVIKLVEETRECAPNTKVNAMEWKPSP
1648387..1650330                   putative KAP family P-loop domain protein; Hrubri_1400                               N/A                 HerbaspirillumrubrisubalbicansM1MPMVETSNAHVSEYLDSYIARKEPPKFAVLLKGKWGAGKTWFINDYFFRRREESNDDAQIDLSDGNKKNHIYISLYGLKDVAAINDELFAQVHPFLAKRGMKILTSLLKSTLKISGSFDIYGDSKPDASVTLGLPSTDLLNTAKKASKMVMVFDDLERCNIPINDVLGYINQFVEHEGAKVIILANQEEIEKRERHKGTADEKVSSQFLEYGRIKEKLIGREFELYPDVDSAIATFAKELSEPLRDRLRSFLPHIAELYTQSELDNLRRVRQALIDFDYWMSVLDSAYLEDADFFRHLLSLFCIYWMEVGTGNLNLDDLQMLPQWMFLGGFTKKNPDERDEKVINIARKYTSVDLTNAVFSIASWRLLISAGSISGETLNLEIRQCSFFRDKNPPSWKTFMHCREMRSDDFYTMLLFMEREFEKGNFNNIQEVKHVAGVFLTLTEECLYSRGPEWVVQTAKSALDILYRDGKVLPREIGKVEPFDRGSWGGYSFESREMNEFYVIEQHAEALVDIVTNTYLKTVAENLVASMESDLTSVTIQLTVGSNGRYGVYPILPLIDVNNFFAAWMRMNNYHRRFVGYMFDGRYEHLQVFPRAIEEVEWLKTLSKLIRTELNSQLTTYEKILVSRFDDQINKLIEKIENYFQV
complement(1650338..1651567)       PHAGE_Salmon_SEN8_NC_047753: holin; Hrubri_1401; phage(gi100034)                     1.77e-100           HerbaspirillumrubrisubalbicansM1MTTTAPAFRIVIEEKDISRPVSDRLISITLRECRGDEADQLDIELDDSDDKLKIPPKGAKLQFALGWLGSPLVDKGAFVVSEVEHSGAPDRLTIRARSASMIDAFRQQRDRSFHETTLGAVVDAIAAGNGLASGISANLRGIAIKHLDQTHESDSALLRRLGKKYDAVATVKNDTLLFMPINEGRTASGKPLPVVKVVRALGDQHRYHSSESDAYSGVRAFWMDEKYGRRRSVVAGQAGNSKRLRTTFANEADARTAAVAEWQRIERGLATFEMQLALGDANIMPQSPVMVTGFKADIDATEWLSKTVTHSISDSGFTTRIEFEIKSEPAETERELEHDPEEGITGVKANWLDKAKTKNAKGSELAGKADNAKTLKRTYATKQSAKRAAALEWAKIKEVREIILENKAK
complement(1651564..1652211)       PHAGE_Pseudo_Dobby_NC_048109: hypothetical protein; Hrubri_1402; phage(gi100029)     3.29e-51            HerbaspirillumrubrisubalbicansM1MMMVLGMFVFSLPTLAYQELQRQTQWKFASNSRVGRRDALQFTGKGDDAITLSGWIAPELTGSAFSLDALRLMADTGKSWFLIQGTGRIYGSYVIDSMEEGRTVLDGDGDAKRIEFTIKLKRTDDSVLSALGLGDISDLRNMVDIDGITNSIADKARNVVGSAIGGVTSAAGAIVGKVGGAAGAVSGVKGAISNASGAVSGAAGSAAGKIGGLGQ
complement(1652223..1654847)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1403; phage(gi100030)     0.0                 HerbaspirillumrubrisubalbicansM1MANELKMQVVFSMMEKITAPLKKIASGAKDTGKALKDTSDRLRELNKQQNDLNGLRELHQGMRKTSAELATAQQRVTDLAAKMKAAENPTRAMTREFNAAVRSVKSLQEASEKQGIQYRALRERLTDAGIGSRQLANAQTWLKNSIAATNAELADQQKKLTASHRQQQVMANARQRADKLRSTAGGLAAAGVGATASGAAVGAPLLAGLTEAKHYETENGRVRALGLGPAATAEAIKFAREMKTYGTSQLDNLQLLRDGITAFGDTHHAEMVAPMMAKMKFGNHAFYGEEEGAENERKFMDMLKVIEMRNGTKDIGTFSKQANMVQQVLTATGGRVGPGEWLNLIKTGGIAAKGLKDESFYYQMESLVQEMGGNRVGTSMMSAYQNLYQGRTTKRSIAMLSDLGLIGDQSKVKHDKAGQVSFLNPGAIKGADLFRENQFEWMEKVLLPQLASKGITDEKGILDAIGGIFSNRTAAQLFSTMYQQRTQIHKNEKLNRGAANIDELDKLGRETASGKELETLAKVADLKLEMGTKILPLYASGLQMAANAVQALSGFMERNPTTAKAMIVGFSAIAAILVVMGPLMLALASVIGPYAMLHVLFAKIGLQGNLLMPILRGIGTVFMWLGRVFLMNPIGLAITAIAVAAYLLYRNWEPIAGFFSNLWQQVRSAFAGGLAGVAALIVNWSPTGLFYQAFAGVLGWFGIELPAKFTEFGAMMLRGLVNGITSGIGAVKDAVLGAGASVIGWFKEKLDIHSPSRVFAELGDYTMQGLAVGLNRGQDGPLSTVSSLAGKLASAGAAVAIGAGSVPAMAFDSRPPISGGSAQPVVYQGDTVQIIIQPAPGMDEQAIARAVATELDRRDRMKASRQRSNLADWD
complement(1654848..1654961)       PHAGE_Pseudo_Dobby_NC_048109: hypothetical protein; Hrubri_1404; phage(gi100027)     2.83e-10            HerbaspirillumrubrisubalbicansM1MADIATVFHWPPAAMDDLELADLMKWRERARVRSGAE
complement(1654970..1655287)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1405; phage(gi100029)     8.00e-27            HerbaspirillumrubrisubalbicansM1MTITATAKIETVVVELDEPLTRGNTQITELTLRRPKSGALRGVSLMDLMNMNVSALQVVLPRISEPALTQFDVAAMDPADLIKCGMEVSVFLAPKADRALVSQSK
complement(1655347..1655856)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1406; phage(gi100028)     1.96e-57            HerbaspirillumrubrisubalbicansM1MGIAHKLKDFNVFQNGIDYSGIATEVTLPKLSRKMEEYRAAGMSGPVSADLGQEAMQLEWTAGGLVKEALKQYAANTHGAVQLRFAGAYQSDDDASVQAVEITVRGRYKEVDMGNAKVGDDTSHKFNMPLSAYKLTIDNEVIFDFDFMNGIEIVGGVDRRADIRKAIGL
complement(1655914..1657092)       PHAGE_Klebsi_ST512_KPC3phi13.2_NC_049452: putative phosphoesterase; Hrubri_1407; phage(gi100037)     0.0                 HerbaspirillumrubrisubalbicansM1MAADYHHGVRVIEINEGTRPIRTVSTAVIGVIVTADDADADAFPLDTAVLITNVVAAQAKAGKRGTMRRVLEAIAAQAKPLVVLVRVAEGADEAEQTTLVIGGVSPEGHYTGAKALLAAQSKLGIKPRILGAPGLDTKAVTNALASLAQTLRAFVYASCWNCATVVAATAYRSEFGQREVMLIWPEFVSWDTTTSADVSISAVAYALGLRAKIDEQTGWHKTLSNVVVNGPTGISRDVFWDLQDPATDAGVLNAKEVTTLINMSGYRFWGSRTCEIQGGFFPFENYTRTAQVLADTIAEAHMVYVDLPMTPSLVKDLVASINAKFRSLKASGYIIDGEAWFDEQFNDKDTLKTGKLTIDYGYTPVPPVENLLFQQRITDQYLADFAARVAAA
complement(1657117..1657401)       PHAGE_Pseudo_phi3_NC_030940: u-spanin; Hrubri_1408; phage(gi100032)                  4.66e-05            HerbaspirillumrubrisubalbicansM1MTPITCYQTDDNGIFTHQVDAYPFPLGEELNVPYMAVQIAPPEVPDGHRARWVSPFQPMDPEYDTAGQWIIEEVPPPAPTEEPEAPDVDALAQA
complement(1657404..1658612)       PHAGE_Pseudo_Dobby_NC_048109: hypothetical protein; Hrubri_1409; phage(gi100022)     1.68e-64            HerbaspirillumrubrisubalbicansM1MSTYFSIPTEIGEAKIANALALGVPLKLTHMGVGDGNGVLPVPDRKQVALVREQRRAPINTLDKDPKNASQIIIEQVLPADVGGWWVREIGVYDEAGDLCAVANCPPSYKPVITEGAGKDQVVRVVLLVASTAAVELKIDPAVVLATRKYADEAIVAYAAPKGHTHPDLAPLKSPALTGTPTTPTPATAASDQQVTNVEFVLDMISKAIDGVVPFFTAIPAQKVSDVIMVKGIGMMEWIDIAGAGEFHGYRSLRCGALEFGTTTAPRPYEADLVGGLGSKTGQASIWAWAQQNGHAVAAATWTTKVFKFADVDANTFRFPDLRDVFARFAGTDADSGQAVVLGSYKADTLKSHYHSVGKPGTVQGGTGGSAMQGGGSEIFSGTTGSAETAPKHTAFMPRIHL
complement(1658609..1659229)       PHAGE_Escher_500465_1_NC_049342: hypothetical protein; Hrubri_1410; phage(gi100030)     5.05e-72            HerbaspirillumrubrisubalbicansM1MYNPVPTLPPNTTPLERAMARACAALADTPAPIRDLWNADRCPVDLLPFLAWSFSVDRWDDTWPESIKRGTIKAARYIHQHKGTIAAVRGVVESLGYIIKIREWWQTEPRGQRGTFALEVGVLDAGITDEMFLEMERLIDDAKPLSRHLTGLRIHLEVRGSLFVGTFIQLGETVTVYPWTPDSIETTGGPFIGCAAHFIETMTIYP
complement(1659222..1660145)       PHAGE_Klebsi_4LV2017_NC_047818: hypothetical protein; Hrubri_1411; phage(gi100027)     2.09e-96            HerbaspirillumrubrisubalbicansM1MSSPIDLSLLPAPQVLESLDYETILANRKAAVLALLPEDQREAAANVLSLESEPATKLLQENAYQELLLRNRVNDAAKAVMLAFAIGPDLDQIGANTNVKRLVLVEADPDASPPVAEVLEGDDAYRLRIQEAPDALSTAGPRNAYEFHARSADGRVLDARAVSPAPCEVVVAILANSDDWQAPADLLQTVYAALSAEDVRPLGDLVSVVQAQVTDYELEAVVYVEKGPEASIALNAARTNAAVMAKPLRPLGYSVYRNAYVAALKVEGVRNVHVKSPAANILCGRTQAARCTGIRITAEVLEEVDRV
complement(1660142..1660486)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1412; phage(gi100021)     1.48e-25            HerbaspirillumrubrisubalbicansM1MIAMNASTGRSMSLLDHIRQCVRDILMTPLGSRIYRRNYGSEIPELIDQPLNGVTVMRIYAAVAYRLALWEPRISLSSVNLNRDATGAVSVVLQGVTNGLAVEFSVQVREGTVQ
complement(1660483..1661127)       PHAGE_Burkho_phi52237_NC_007145: phage baseplate assembly protein; Hrubri_1413; phage(gi72537705)     1.36e-33            HerbaspirillumrubrisubalbicansM1MTPDLSELVRTIPNLIRTGKIAEIKADKVRVRLSPSLLTTWLQWVALRAGDVINWCPPSIGEQVIVFSPNGDLTQGKVLAGLFSADSPAPQSSLKIRSIHYPDGAVVLYDFAKHTLSAILPAGSSALVKADAVTADAQQTTCTGDVTIKGNLLVEGFSALNNGARVQGGDGGAAMVIDGQVQATGDVMAGDISLRHHPHGQVKRGDEKSGAPLP
complement(1661853..1662323)       PHAGE_Burkho_ST79_NC_021343: phage virion morphogenesis protein; Hrubri_1414; phage(gi509141638)     4.81e-42            HerbaspirillumrubrisubalbicansM1MSDDLQRLEEWAAALIAKVQPAQRRQLVRQVANDLRREHARMIAQQIAPDGTPYPARKNRKELRSKSGRIKRQKAAMFNKLRTNTYLQVQADASQASVGFFGKVARIARIHHEGLPDKVAPRGPNYKYPARPLLGFTTTDTAKIRELLLEHLQKAR
complement(1662320..1662805)       PHAGE_Pseudo_Dobby_NC_048109: hypothetical protein; Hrubri_1415; phage(gi100015)     8.95e-39            HerbaspirillumrubrisubalbicansM1MYKPNNLRDYLRKAIKELAQNPDKLHIFIDEGGTRATGTAGLSFEYEYVLNLILTDFGLDLDVVFVPLLAWMRVHQREAFANPENAKKAVRFEVDMNSAQSLDLSIKLTLTERTIVKRQDGGRLQISHAAEPQLTPPFADDFWQLYRGDSLLAEWDVPKLP
complement(1662759..1663328)       PHAGE_Burkho_DC1_NC_018452: Rz; Hrubri_1416; phage(gi401723083)                      6.90e-10            HerbaspirillumrubrisubalbicansM1MTLTQAWRTRLRVALGLGLLGASFGAGWAIQGWRKDADISHLKEGIATANQAAADARAERTQQVLQAERNARDALQAITDKLTNERDSARHEKETFIAGVRSGAIRLSVPVIAAMPAGASCPDSSTTGGAGQEARAELTPAAAEFLDDIASEGDDAIRQANALIDAYNALREKLNVQAQQSAGLPAQGH
complement(1663325..1663855)       PHAGE_Salmon_IME207_NC_031924: hypothetical protein; Hrubri_1417; phage(gi100017)     5.11e-48            HerbaspirillumrubrisubalbicansM1MNPLDNRRAFLGMIRFSEGTSNSPTTRDRGYDQIVGRTRFTSYADHPRVRVYLPRYKVWSTAAGGYQLLLRYYDHYAPLLKLKGFAPDVQDAIALQQIKECRALPDIDAGRLSDAIAKCKNIWASLPGAGYGQFEHRYADLEQAFLREGGEAIVLPIPKTSEELHLAFVQAGGVLA
complement(1663852..1664226)       hypothetical protein; Hrubri_1418                                                    N/A                 HerbaspirillumrubrisubalbicansM1MAAESAGGIAAVLKIYGIKAVLGMVGAALLYIVLPPRNADGSFNEKEFVVRLACAGAFSIMFGDLAFSLLVQHAAAVATVLGPKPVDLMVGAPAWWVTRAVALWFQRRQGKDIAELARDVKETL
complement(1664267..1664476)       PHAGE_Klebsi_ST147_VIM1phi7.1_NC_049451: hypothetical protein; Hrubri_1419; phage(gi100013)     7.99e-16            HerbaspirillumrubrisubalbicansM1MQVRSQQGDTLDALVFRYLGASSGYVEQALALNPALAALGAVLPAGTIVTLPAALEASATTQDSISLWD
complement(1664476..1664967)       PHAGE_Burkho_AP3_NC_047752: hypothetical protein; Hrubri_1420; phage(gi100010)       9.51e-39            HerbaspirillumrubrisubalbicansM1MNYLDDIPVIPGPTTPADVKDITNDGFFPDISMSAMRNAMRLDSTVTDARLRPALVDAILTTNRLLREWQAGHLASGIQTLEQVPALKVDGESQYVAHYRRAVYSFAKADIFESYRDYDTTASALTDKKNMEWMDTAPDVQRRNGHWAINDILGRTHATVELI
complement(1665056..1665736)       PHAGE_Burkho_AP3_NC_047752: hypothetical protein; Hrubri_1421; phage(gi100009)       1.92e-51            HerbaspirillumrubrisubalbicansM1MLGKLAAAAGEPGGVTTGSAYELMLMKLHEDRRTLSNIQSIERKIEMKATMLPAYQDWIDGVLSAGRGAHDEVLVNVLVWHIDVGDYERALQLSAYALEHRFTLPDRYNRTLPTLLQDDFAGASLGGKLKDDPARAANILQQVLAMTGNADTPDQARAKVHKALGLALLELVNQVDAENITTASADQATAALQHFTRASELHQAAGVKKEIERLERRLKKFAEPAK
complement(1665775..1666818)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1422; phage(gi100009)     9.30e-149           HerbaspirillumrubrisubalbicansM1MKNQTRAAYNAYTARLASLNDVAGGAVHSTFSVDPSVQQKLEDKMQESSEFLSSINLIGVDELEGEKIGLGVSGPIASRTDTRGDKRRNTRDASALSNTRYRCEKTNFDTHITYAKLDAWAKFQDFQLRLANAILKRQALDRIMIGFNGVKVAADTNLDQYPLLQDVNKGWLQQIREQSPQRVMGLVGQDLPGKVIIGKGEGADYVNLDAAVYDAVTNLDPWYQDDTGLVVIVGRELLHDKYFPLINKAQAPTEVLAADIIVSQKRIGGLPAVRVPSFPANAMLITRLDNLSIYFQNGGRRRRVVDEPKADRIENYESSNDAYVIEDEGLAALVENVVLQDAAAGGA
complement(1666870..1667712)       PHAGE_Pseudo_Dobby_NC_048109: hypothetical protein; Hrubri_1423; phage(gi100006)     1.86e-77            HerbaspirillumrubrisubalbicansM1MATKSKFFRVATEGATTDGRSITREQIQQMADSYNVKTYGARVWVEHLRSLLPDGPFKAYGDVLSLKAEEVDTENGKRLALFAQIEPTPALIAMNKDRQKIYTSIELADKFADTGSSYLVGLAVTDSPASLGTEILQFSATNPKASPFTPRKLEPENLFSEAIEAKIEFEEDGPSVAETIKQLFSRIGGGEKKADAQHADVVAAMTAVAEKVGEFAQATAQTSKDVAEAVARLEKLEKRVGDESTTAERFRQTVNLTDKSNVQRPPATGGGSSGAALTEF
1667856..1669637                   PHAGE_Burkho_phiE202_NC_009234: gp4, phage terminase, ATPase subunit; Hrubri_1424; phage(gi134288784)     0.0                 HerbaspirillumrubrisubalbicansM1MLDIPEDIKDNIDQATEPRQLARRLYFEGWRISSIARHLKIKRSTVNSWKHRDEWEKVSRLERVEIALEARIVQLIAKEVKGNGEYKELDALMRQLVQAARVRRYEQPGGNETDLNPKIANRNAGPKKKPVRNEFSEEAQQRIVEAFNDSLFDYQKVWYRNGSERTRIILKSRQIGATWYFAREALIDAIQTGRNQIFLSASKSQAHVFKQYIIQFAKDACGVELSGDPIVLPNGAHLYFLGTNARTAQGYHGNFYFDEFFWTHNFTELNKVASGMALHKKWRKTYFSTPSATTHQAYPFWTGEAFNKRRAKGDKVNIDVSHKRLSSGFTGEDKIWRQIVTIMDAAAGGCDLFDIDELRDFEYSPDQFDNLLMCNFIDDSASVFPLADLQRGMVDSWVDWDDYKPFTARPFGHRPVWIGYDPSLTGDSAGCSVIAPPLVPGGNFRILERHQWRGKDFSEQAALIKEMCGRYNVQYIGIDTTGMGVGVFPLVKQFFPAVTPISYSPEVKTRMVLKAQNIIRSGRLQFDAGWTDIAQSFMAIRKILTPSGRAVTYDAGRSEETGHADLAWSVMHALDYEPFEGTTANNTSSMEFF
1669637..1670689                   PHAGE_Burkho_phiE202_NC_009234: gp5, phage portal protein, pbsx family; Hrubri_1425; phage(gi134288763)     2.00e-153           HerbaspirillumrubrisubalbicansM1MKHRARRRAAASTNTPPATVPAPATPSVEAFTFGDPSPVLEGRDMLADAECYRNGDWYEPPLSMAGLAKSLNASVHHASAIWCKVNILASTFQPSAILSRADFTRLALDFLLFGNCYAERRESMTGKLLSLKPALAKYTRVGVESGRYFFVNGWRANYEFEPDSIWHLQAPDINQEVYGVPQYVSALQSAWLNESATLFRRRYYLNGSHAGFILYMTDTASNVNDVDKLREAMRNSKGPGNFRNLFVYAPGGKKDGLQILPVSEIAAKDEFFNIKNCTRDDVLAAHRVPPQLLGTMPNNTGGFGDVTKAAAVFGCNEIEPLQAQFLSLNEWAEQEVLSFRPYQLPTNEGK
complement(1670919..1671644)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1426; phage(gi100005)     3.48e-54            HerbaspirillumrubrisubalbicansM1MKRPYELTTIFRQPGPLHVPAMLTELHSIRQELKACSPLLDEWLLKGNTKDEAYRYEVFDSAGPTTAAIAVLTESLKTTVDPKIVSMWNGKEGPEGASLQYVGRVAPETSMIVLRAKPSAFSTTAEPVLKLVLKNVNLLTPSVLTLETASYFDKKVFKDRPGVGWMLYLPRALNAQQVPEAGALVPVMSKDASGKDKQLGTIIVSVIDEPFSDENSEHVKIANAIEIRLVDQDLLPRFADL
complement(1671641..1672243)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1427; phage(gi100004)     3.98e-56            HerbaspirillumrubrisubalbicansM1MATLAAPLLEGVVARILTALGVGVVAGAAGEAAKEQARKRQEEAEKAKSAPIARTEAQTKERKKCPDCTPDRGAPFNRSTAGWSEVSIAYQSRISGMPVGQGFITEWLFSGVTFDGFDSSQCLLKEAKAKYDQFFDDFGDPQEWWKGDEPIMAEATAQSLVAKPRPPVQLRWYFMQPMSYRFFSKIFSAMLLPIETVFEP
complement(1672243..1672623)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1428; phage(gi100003)     6.16e-36            HerbaspirillumrubrisubalbicansM1MKGDAFVSGGTMLTLTEAQWQNLLQGEARQFVAAVCDEFLTNRPEMRDQPGREVVLEHMRDAYDYAARIGFTSTPHIVRLMYLSADAPRIYDDPLVDHYLRKPGATPEQRLDDLDAMMKHKLKGDH
complement(1672574..1673083)       PHAGE_Ralsto_RsoM1USA_NC_049432: hypothetical protein; Hrubri_1429; phage(gi100002)     4.05e-55            HerbaspirillumrubrisubalbicansM1MTMFDVQSRLETLHNSMPALRLYALVDGVQYQAQLCKRFQSSSGLFPLFARTPDAALAHAGPWLVDTAIANHVSMAELITLERDAPALTWLIASQDLEGLGQLLQLRLDVNLPDGRSALLRFWDPRVLVNLARTLDAAQREEFFGHIHEWHMLHEGRRVCIRRHHADAH
complement(1673080..1673496)       PHAGE_Ralsto_RsoM1USA_NC_049432: methyltransferase type 11; Hrubri_1430; phage(gi100001)     3.24e-24            HerbaspirillumrubrisubalbicansM1MSRPFITLGDKTSHGGTVISADHTSSIHGKYMARVGDKVVCPKCKGVFAIKSGAPDMVDSQGRGYARHLDTTECGASLISAQATTTWSDDSMIGDSAADAKAEALSTTSQLAASTDSGICLDCLRKAAHFGSPIVIRE
1674107..1675267                   hypothetical protein; Hrubri_1431                                                    N/A                 HerbaspirillumrubrisubalbicansM1MIVSINRLRQFGIFNDFSGTKIQKFGKYNLIYGWNGTGKSTLSNLFSCFELRALIPRFKLAQFSVALEDGSTITETSLPTSSLNIHVFNQRFIHENIDWDKSVKSILLIAKEKIDDLQKLEQLKVSLQLKKKTCEDKLSDIEKQREALDKFLTNAAKKMKLGLQAIDTSDSYYLNYDRRKLATFIQNNSEAVVKVESVLADAEIVALTNASRPDQLPSINFQSEEIDLDYFKKAAVRIRDLIATTAVNQALQRLTDNQDIREWVQAGLELHEHHGSSSCEFCGSPLTQTRAEALAAHFSKEFRDFQQRLQNAATWIETQGVPLNLLPPAAAFYKEFSEESDSLQKEYASTAAKIDKQIEEWRGALQMKIADPEKTNIEPPRILRRL
1675287..1675613                   PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923: hypothetical protein; Hrubri_1432; phage(gi100003)     2.10e-34            HerbaspirillumrubrisubalbicansM1MNKKSSKFSPEVRERAVRLVREQRDEHSSTWSAVQSIAPMIGCTPQTLLDWVKRAEVDSGERDGVSTAERERIKALEREVKELRRANEILKTASAFFAQAELDRKLKS
1675670..1676518                   PHAGE_Burkho_phiE125_NC_003309: putative transposase OrfB; Hrubri_1433; phage(gi17975200)     5.08e-166           HerbaspirillumrubrisubalbicansM1MQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWRQLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSDPKAACPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYARQPEGNGGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAPWKTRESVELATLEWVAWFNHHRLLESIGYIPPAEAEANYYSRFASNTAVSA
1676799..1677734                   hypothetical protein; Hrubri_1434                                                    N/A                 HerbaspirillumrubrisubalbicansM1MEILAQQVAMIEAQLSNETIGAKEFNDVLHRFIGRSELCLHFNQEMKGYEIIRNGVGEHDGNLSEGEKTAIAFVYFITKLKENGNNIKDTIVVVDDPVSSFDSNHLFHAYAFLRTQCVEAKQLFVLTHNFTYFKLVRDWFAGVNRNRNNKGKPDNCCFYQLDAPPGSPRHSSLVDANDSLKEYSSEYHYIFKRLYGYINHATLDRDEAFLTANLARKLIESFFAFKYPKKRSDISQLMEVGLKDCSLTTPELKEKIYRFINKYSHNDVIEINEDSAENLTGEGQSVIGNIFQWIEEVDKKHYDEMVQVATA
1677915..1678616                   PHAGE_Mesorh_phagevB_MloP_Lo5R7ANS_NC_025431: putative restriction endonuclease BglII; Hrubri_1435; phage(gi712913247)     1.02e-23            HerbaspirillumrubrisubalbicansM1MFDTSTFDDPYVLDPVIRRRWAFMETSSAAAVLRSVCPNEWADIVHVLRSFELDPRQWLRAGGNRGDIAQLIDGMFSQLGWKETRVDLSTQGILLSKKLEVIERLPAVHQEGYLVDNFKGRVALDVEWNAKDGNLDRDLSAYRAWHEAGVISAAVLITQDRVRLKQLAETLWFDYQQTLPEVQRNLKLPIDLNTSTTTNLEKAALRVRRGVMGTCPLLIVAATPETWNGQPYR
complement(1678669..1679349)       PHAGE_Phormi_MIS_PhV1A_NC_029032: hypothetical protein; Hrubri_1436; phage(gi100007)     6.85e-23            HerbaspirillumrubrisubalbicansM1MKEIPPVDKPQDAAADFREFVDGRKFGTILADPPWQFENRTGKVAPEHKRLNRYPTMTLDDIKALPVAEATADTSHLYLWVPNALLPEGLAVLKAWGFEYKSNLVWHKIRKDGGPDGRGVGFYFRNVTELILFGVRGKNARTLAPARSQVNFLATRKREHSRKPDEQYPLIEACSPGPYLEMFARGERKNWTVWGNQADETYFPSWDTYQNHSQAEPARSDVIVTL
1680042..1680119                   attR                                                                                 N/A                 TTCGAATCCCCCCCTCTCCGCCAGAACAGAACGCCTAACCTATTGATTTTCAATGGTTAGGCGTTTTTTTATGTCTCA

#### region 2 ####
4836927..4836963                   attL                                                                                 N/A                 GGATTGAAAATCCTTGTGTCGGTGGTTCGATTCCGCC
4840779..4841849                   PHAGE_Ralsto_RS603_NC_025454: hypothetical protein; Hrubri_4131; phage(gi725950589)     1.19e-09            HerbaspirillumrubrisubalbicansM1MGINVYTGLMGSGKSYEVVAEVIVPAIAKGRRVVTNVDGIDGDKIRAYIEKHYKPVPEQLGEVVHVTNGDVALANFFPYYDDKKGAHTDTLVQPGDLVCIDEAWRFWPATGANLLQEHKSFFLEHRHFTNEKTGVACDLVLMIQDMSTLNRFVKNVVAFHIRTHKKISLGMPTHYSVSIFEGNKQSKAARISVELRKYRKDIFPLYSSFKGGAEGKIVNVDKRQNMLARKKIWTTGGVLLVALVTGLYSINRFFHPKRTEQSTQPGKPQDASGSGAKQSNAQTTKPAFSDTWRIVGTARFGTTSYVVIADEAGRLRYESPSMFVQMGPQTIGEIDGAKVTRYSGAVIHSVHIEGKK
4841846..4843153                   PHAGE_Vibrio_VFJ_NC_021562: phage morphogenesis protein; Hrubri_4132; phage(gi514361041)     4.63e-13            HerbaspirillumrubrisubalbicansM1MKRMITALLMAYSTLAVAAPSGPLLPLTPLSMPLPPGAPPQSDSAMEFSRVRVAEAVEAMYTQILKTPYLIQPEVVADERLVSFRFGTGVSARSEVSRFMGLLGLSVRTVNGVDIVGIVKEAEPDKEPFVYRPKYRDVTYLVELLRGLFPKGEFTSTRSIHGAPQAITADAATGQSKAPAPVGSAASLLDTDPDALVFNGTETDIKKLSALLAQLDTRQGEVMVRGQVFEVASNGAEGSAFSLALHLLGGTVSAGVSQPSTLDGFVRLKNSSIDAVFAALSSDSRFKTISAPSLRVRSGAAGRFAVGQDVPVLGAISYPGNGSAPVQSVEYRSSGVIFDLRPIVRESVVDLTVGQQLSNFIVTQTGVNNSPTLTKREVSTSLSVADGDVVIIGGLAENRESSGRIGFSFLPDWMRSNTGQNSKTEILLVLQVSRL
complement(4843155..4843454)       PHAGE_Ralsto_NP_2014_NC_023586: hypothetical protein; Hrubri_4133; phage(gi589287133)     1.61e-17            HerbaspirillumrubrisubalbicansM1MEQPELPLLHFPYQPYFAHFKRTRKALAPANFVPPWKQLRLTLYVRNLMRKGAAFIWTRPDGRQFFCKTMRQLVARIMDYDGYILHTIFQYKNGRLIRT
4844066..4844929                   PHAGE_Ralsto_RS603_NC_025454: hypothetical protein; Hrubri_4134; phage(gi725950591)     6.00e-24            HerbaspirillumrubrisubalbicansM1MLTASIDKVAANANLKASLGSYFAGTDVQRWKTLTVTEFPNGVEVFLDENRETYSDGQIFDYSTECEEPTKRGEGDHERARIVAARRAKTKVRRLAKMLQADCLLTLTYRECVTDYARVEADFKAFRERLRSVGDFHYVATLEVQKRGALHVHIACQQFPAWLQNEHGVRVRSWNLIRSMWRRVVGKDNGNVNFTRPRGRNSAHRIASYISKYVSKNLEEARFNKKSYWASRGIPKPSQYKIYFKADTDSFDIVVLVAQEFSMRGFDDIAQYHDRLNSFYWFSASKS
4845086..4845901                   PHAGE_Ralsto_RSA1_NC_009382: site-specific recombinase; Hrubri_4135; phage(gi145708124)     2.75e-80            HerbaspirillumrubrisubalbicansM1MFSDESIFRWLHPHLAHVSLSDIDRDVVRALRDCKARTGVCPATINRMLSLIRAVLNVAQREWGWIEEPPFIRLLAEPRSRIRFLSRDEAAKLLRELPEHLSDMAAFSLATGLRKTNVTGLEWSQVDMRRGVAWVHHDQMKNRCALAVPLNQDALAILASRLRRHPRFVFTYKGERILQTSTAAWYKALKRCRIHNFRWHDLRHTWASWHVQGGTPLHVLQELGGWRTYDMVLRYAHFSADHLAAYARNLTLPGLRNFDNTLLSPNWTQIS
4846110..4847456                   PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: putative phosphoesterase; Hrubri_4136; phage(gi100037)     2.31e-63            HerbaspirillumrubrisubalbicansM1MFIEFSTENFLSFKERASLSMVASKLKSRNRGFDKGATFEIEGYPLTLLKCAAIYGANASGKSNLFSAMRFMRELVLNSSKESQAEEPTGVQPHLLSVGYSDRPSFFEMAFVAGGRMYTYSFSLDSKCIHTEKLISIVGPKERELFSREGDNIVLDPSFSEGNLLVEKTRKNALFLSVCANFAGKISGKILRWFDRLRLVSGLRDNGLMPFTQSCLDENHKSRDAIDALLKSFDLGIERVRPGKEKALEIPDGSNFSGELRTAVDAIAKYTKAQKIAIRDTNSFHKVFDENGDVAGEIAFDLATSESQGTQKLVALSAPLVDTLTNSLIVFIDEFDARLHPILSRSILRLFNSESGNPKNAQLIIATHDTNLLDRSLLRRDQIWFCEKDRYGGSHLTSLVEYKVRNDASFEKDYIIGKYGAIPILGNLSQIFGSSIVRSSKGKADVGD
4849182..4849218                   attR                                                                                 N/A                 GGATTGAAAATCCTTGTGTCGGTGGTTCGATTCCGCC
