gi|00000000|ref|CP013757.1|  Piscirickettsia salmonis strain AY6492A, complete genome. 3042741, gc%: 39.75%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
489295..489306                     attL                                                                                 N/A                 AAATAACCTAAA
490682..491050                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_02515; phage(gi23502708)          7.93e-29            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDGTVAKNLDLSRV
491080..491808                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_02520; phage(gi23502708)          4.83e-49            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
491860..491875                     attL                                                                                 N/A                 TTCGCAACAGTGCCCT
491865..491911                     attL                                                                                 N/A                 AACAGTGCCCTCTACCGCATGCTGAAGAAAAAACAGATGCACTGCCA
complement(492014..493627)         PHAGE_Liston_phiHSIC_NC_006953: putative helicase; AVI48_02525; phage(gi62362405)     1.67e-58            PiscirickettsiasalmonisMFALRTYQKEAITAVANWFRENEEPCLIFASVGAGKSLIAAHIALSIVRRGGKVLVIAPSEELVSQNEQEFISYTGDNLSTGAICASLNRKELGKPITYATPGTAINHPQHYDVICFDECHIGDFNKAESLVSGVVQQNPKARVIGLSGTPYRSTSNVHGKNKFFKECVYSITMGELIEAGFLCKYRFGLDKQEQKLDFSNVRITSGRFNGADLEREAAKQDRLTASIIHEVTQVMTQYTGAFIFGASVRHCEEIMSSLPANEARLITGDTAKVERRQAIADAKAGIVKYLVSRDTLFTGINLPTFDVIVWLRPTESRVIFDQGIGRAIRTSPGKDHALILDYAGNIEKHCNSQISNEASQQRKATYDQVCFSCGCINRNTARECEGCHEKFVFKLCESCGYKNDIAGRSCKSCSAELIDPNDNLDRQAATERKTGEYVNVHKMSVKKIGGRDKPKILVIYETDNGEVTECHLHNMNLPFVKPQWRDFVSDVRGPWFKGLYEHDKVIEVADSFMCPQQLRVKASKKGYWKVLERIMG
complement(493669..494022)         hypothetical protein; AVI48_02530                                                    N/A                 PiscirickettsiasalmonisMYKDSHKVIGYFSYSEEGDVFCDKDACVISGSSESLHGYIDAMLPDQETSGIVKKTRFEEIMQGISRGAAYAFDQESYTRFLPLAEKNGMSDLPALSEFEKHQPEENTPQFIRISQS
complement(494035..494334)         hypothetical protein; AVI48_02535                                                    N/A                 PiscirickettsiasalmonisMLISYNGYEIDFNQAHSISVEGDEIIFHNNEKNGCCIMCINAKSYLNFYNTEELINEMLGVTDDFEVRTGPVVTSRIDERFGLSKKVCFTFFNVGSFNC
complement(494551..495279)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_02540; phage(gi23502708)          4.83e-49            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
495324..495347                     attL                                                                                 N/A                 ATCTAAATTTTTTGCAACAGTGCC
495456..496553                     hypothetical protein; AVI48_02545                                                    N/A                 PiscirickettsiasalmonisMRENIVSAAKRIIIKVGTSLLVKDSKLQTYFITHLAQQIVQLRARGKECIVVTSGAVGLGAELNHKGKTPNRTEQQALAAIGQSRLMQAYDHIFAQNDLMTAQVLITRDDIQSRHNYVAIANTLKQLVNWHVVPIINENNAISIEATAIGDNDTLAALIASQAQADLLVLLTCVDGLIDYRTNQVVETVTNIEQQAAELVRQEKTELGTGGMATKLQAARIVNESGIAMLIANGQQPYVMTELLQGANIGTLFCPSKKNLYGKKSWIAFGADCRGEVHIDHGAQVAVCERGKSLLASGVVQVVDHFSRGDTVALFCEGQRIARGITHYSSTELEQVKGCQVSYIDELFTGKLPAEVIHRDNLALL
496587..497837                     gamma-glutamyl-phosphate reductase; AVI48_02550                                      N/A                 PiscirickettsiasalmonisMEENIKKLAKQAKQASYELAVLSSEVKNQVLQSLQQLLINNQEVLLAENQKDLAYAKENCKNTAFIDRLTLNHARIMAMVDALGVIIDLPEVNQKVIDRQVINNGLILEKTSTPLGVIAMIYESRPNVTIDAAALCFKSGNAVILKGGKEAIHSNRALHRLIIQALKQHQVPAGCVQFVDYTERAATHVLLQQVDYIDVVIPRGGKNLIKAITEQSQLPVIKHLDGICHTYIDATANIAMAEKIIINAKCQRPGVCNAMETLLIHQEIAKSALPRFANLLKAHGVLLKGCEQSCKIIKEIMPAGDADWSAEYLDLILSIKVIKNIDQAIAHINQYGSGHSDSIITEDKACAEQFLQQVDSAAVYHNASTRFTDGEVFGKGAEIGISTDKLHARGPVGLNELTSYKYIIRGTGQIRD
complement(497977..498705)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_02555; phage(gi23502708)          4.83e-49            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
498750..498773                     attL                                                                                 N/A                 ATCTAAATTTTTTGCAACAGTGCC
498864..499166                     hypothetical protein; AVI48_02560                                                    N/A                 PiscirickettsiasalmonisMLIYGQLRECWERGIEEILLGGIVERYRNSVQTQQILLVSDITVEDCKDIENGMTKCSKWLPGHDLAAGAPQDMPDPDGLQADVDSFNNWVERIKKRRKK
complement(499234..499620)         twitching motility protein PilT; AVI48_02565                                         N/A                 PiscirickettsiasalmonisMKYILDTHVLLWAASDSPKLSSEVRLLLSERGNELFFSAASLWEIAIKNSLGRKDFKVEPHLLRRGLLDNGYSELVITSEHAVGVSGLPSIHKDPFDRILIAQAISEGFTLLTADELVVQYPGPIMKA
complement(499617..499862)         prevent-host-death protein; AVI48_02570                                              N/A                 PiscirickettsiasalmonisMQTVNIHEAKTHLSRLIEKASSGEPFIIAKAGKPLVKVVPLSAPDETDVKRVGFLTGQIEVPDDFDTMGCDEIEKLFGDEE
complement(500271..500999)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_02575; phage(gi23502708)          2.18e-48            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHILDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAIKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
501001..501067                     attL                                                                                 N/A                 GCAATTCACTCTTAACTTCCGTTGATTGCTACACCCTACTCAAATCTAAATTTTTTGCAACAGTGCC
501001..501067                     attL                                                                                 N/A                 GCAATTCACTCTTAACTTCCGTTGATTGCTACACCCTACTCAAATCTAAATTTTTTGCAACAGTGCC
complement(501029..501385)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_02580; phage(gi23502708)          4.23e-27            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGGTVAKNLDLSRV
501387..501453                     attR                                                                                 N/A                 GCAATTCACTCTTAACTTCCGTTGATTGCTACACCCTACTCAAATCTAAATTTTTTGCAACAGTGCC
complement(501483..502352)         PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; AVI48_02585; phage(gi100148)     1.76e-86            PiscirickettsiasalmonisMSIIKKAVFPVAGMGTRFLPATKATPKEMLPVVDKPLIQYAVEEAIEAGIKELIFVTSSNKRAIEDHFDRHYELEKRLEEAGKAQFLSIVRDILPQGVSCSYVRQAEPLGLGHAVLCAESLVGPEPFAVILADDLIANDGPLCLSQMVEKYNDKGADCILAVQEVPEGDTHKYGIVATESSDRVIHMVEKPQPENAPSRQAVVGRYILSPKIFTALKNTSQGAGGEIQLTDAIASVLQNQRVLAYPFAGKRYDCGSKLGFLEATLDYALDHPELGLACQEYLQKRFQLN
complement(502349..503698)         PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; AVI48_02590; phage(gi100146)     1.94e-91            PiscirickettsiasalmonisMRVTVFGAGYVGLVTAACFADLGNQVICVDVDEKKLAQLAEGKSPIYEPGLDELLLRGQESGNLEFTADIQSAVEQGEFIFIAVGTPSEESGSADLQYVLAVAKSIGEYMNGYKLVIDKSTVPLGTADKVRQVISNELGARGVNYEFDVSSNPEFLKEGAAIEDFMYPDRVVIGIDNLRAEKRLKTLYTPLTKKNNCLVVMDVRSAELTKYAANAMLATKISFMNEMSQLAERVGADIEMVRQGIGSDSRIGYHFIYPGCGYGGSCFPKDVRALVHTAAEHGFDTKILGAVQEVNEKQKELLLEKVLREFQGDIQGKTFALWGLAFKPKTDDIREAPSRVLMEGLWQHGAKVQAYDPAAMDNIQAVYGARDDLYLATSASSALTGADALIVVTEWTEFRSPDFNVIKKTLNQPLVIDGRNIYDAEHLESLGITYRCIGRGEWLMKDVCR
503811..505451                     glucose-6-phosphate isomerase; AVI48_02595                                           N/A                 PiscirickettsiasalmonisMNTAAWTKLTAHQQEIKHTHLRDLFINDSQRFNHYFKQGPHLSIDFSKNHLTNHTLKLLIALAQEHSLGDKIHALMQGATLNITEKRAAFHSALRVPASKHHQLPKAVAKQITTVHAQMRTLCAKIHGQTPLYSQGQIITDIVNLGIGGSDLGPAMVTTALTPYHKKHLRCHFVSNVDGNQLHNTLKNLKPETTLFIIASKSFTTQETFANAQSARHWLETAQLSTAQINHHFICCTSKPEKAREFGILAEHILPMWDWVGGRYSLWSSIGLPIALATGFDHFEALLAGAHAMDNHFQTASFEDNLPVMLGLIGLWYINFWHTRSHALLPYEQMLTLFPSHFQQVDMESNGKHVQINGEPVNGQTAPVIWGQPGTNGQHAYHQMLFQGTEMIPMDFIVGLKTHSPYQQQHNMLVANCFAQTRGLMWGCDEKEVYQQMINQGVNQTEAQRLAPHKAIIGNQPSTTILYDKLTPESLGALIALYEHKVFVQGVIWNINSFDQYGVELGKVIGQNILAQLQGGSNIKNNNIDDYDASTQGLIHYFRNNQ
505596..505671                     tRNA                                                                                 N/A                 GGGGCTATAGCTCAGCTGGGAGAGCGCTACAATGGCATTGTAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCA
505683..505758                     tRNA                                                                                 N/A                 GTCCCCTTCGTCTAGAGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCAAATCCCCTAGGGGACGCCA
complement(506174..506902)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_02610; phage(gi23502708)          2.61e-48            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVNRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
506904..506970                     attR                                                                                 N/A                 GCAATTCACTCTTAACTTCCGTTGATTGCTACACCCTACTCAAATCTAAATTTTTTGCAACAGTGCC
506947..506970                     attR                                                                                 N/A                 ATCTAAATTTTTTGCAACAGTGCC
506947..506970                     attR                                                                                 N/A                 ATCTAAATTTTTTGCAACAGTGCC
506962..507008                     attR                                                                                 N/A                 AACAGTGCCCTCTACCGCATGCTGAAGAAAAAACAGATGCACTGCCA
complement(507182..508918)         chemotaxis protein; AVI48_02615                                                      N/A                 PiscirickettsiasalmonisMNVKNTMKLVFGVIAFGIFISVAMVLELNNLLKKVNEEAKIRYQSYQAADELRQSSDDLTRLARTYVITGDEKYKKMYMDILSIRNGQKARPQNYHSIYWDLVLEYGQKPKPDGEKVALKSTMRKLGFTEHEFQLLKQAQQNSDTLVKMEVRAMNAVKGLYPDSSGNYSQHGIPDLTTAAKILHSKKYHNEKSNIMIPINNFFKELENRTDRQLRIAEQKVENVVLTASISLISVLVISILGYIILNHQVVKPIEQMAHVLRQVDSKSDLTLRVDENSNNELEVIGNSINKVLASYAKTIIKIGEVNSTISSISHSIQSITEENINMAEEQTAEVKMATKAMEEMTVALSDVVRSTNMAEQHADSAEKEASTSKSVFNKTTKEFTELESEFTITARTIQQLAEESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQYSTGEIESIILMLQGKAKESTENIHSSTEKMQSTRSNMGIANEALSTIQGSVIEIHKLNTSIVTATTEQLEVSDEISGNLSNIKQLSLSMNTVVNQLEPFVVDLERNVGDLNKVVSSIRT
509138..509154                     attL                                                                                 N/A                 GAAGTTAAGAGTGAATT
complement(509422..510150)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_02620; phage(gi23502708)          4.83e-49            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
complement(510309..510809)         hypothetical protein; AVI48_02625                                                    N/A                 PiscirickettsiasalmonisMAYRIEKLKRSHDRKRFDCGVDRVNQYLQKVARQQNDDSESGTIVYCLVDDSQPKTILGFFSLHSTRESLNPVLKKASTKAVGCLLVGWLGVDKDAQSMGIGKVLIHDIFIKFIDYDQMFAAIILDAITDDDRLIKFYKRMGFRTLTDNRYFVTLKTVWATLSEND
complement(510784..511293)         hypothetical protein; AVI48_02630                                                    N/A                 PiscirickettsiasalmonisMEVTMPARKKTESNRQVKRKTSRNKLSVQATKEAVSSKKTRAAARGQSTLTKVAVNSGEKTKYLSFRVDMDFHQRATNAAAYAYQGKLSELLDEAVKEKLEEIEQAQEAVLKSRLHLSKKDLKVIADEVETPSAPTKAFVDFMNKDHLDHKKYNKNIASILSGIQNRKT
complement(511577..511795)         PHAGE_Escher_RCS47_NC_042128: hypothetical protein; AVI48_02635; phage(gi100027)     7.45e-05            PiscirickettsiasalmonisMKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
511873..511889                     attR                                                                                 N/A                 GAAGTTAAGAGTGAATT
511893..512621                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_02640; phage(gi23502708)          4.83e-49            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
512673..512688                     attR                                                                                 N/A                 TTCGCAACAGTGCCCT
517037..517048                     attR                                                                                 N/A                 AAATAACCTAAA

#### region 2 ####
complement(631916..632644)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_03290; phage(gi23502708)          3.54e-49            PiscirickettsiasalmonisMVKRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGNTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGLFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
632702..632713                     attL                                                                                 N/A                 GCAACAGTGCCT
632986..633513                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_03295; phage(gi23502708)          6.64e-38            PiscirickettsiasalmonisMVKRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGNTLDWMLSRHQNAKAALRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGLFSGTVAKNLDLSRV
633543..634271                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_03300; phage(gi23502708)          3.54e-49            PiscirickettsiasalmonisMVKRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGNTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGLFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
634326..634337                     attR                                                                                 N/A                 GCAACAGTGCCT
634355..634382                     attL                                                                                 N/A                 CGCCCTCCGTCATCTGAAGTGCAACACT
complement(634391..634711)         PROPHAGE_Neisse_MC58: IS30 family transposase; AVI48_03305; phage(gi15677611)        1.30e-25            PiscirickettsiasalmonisMNVVGSTFFDFKTITSDNGTEFAGHEAISKITEADFYFARPYRSCDRGLNEHTNGLIRRFLPKGTDFNEISDKEIAKIEHTLNTRRRASLNYCSPNHVFLEYLMAA
complement(634800..635528)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_03310; phage(gi23502708)          1.43e-49            PiscirickettsiasalmonisMARRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEMTGERGLELERSTICRWVHEYGPEIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAALRFFKKAIAQPYVKSPRVVNVDKHASFPSAHQKAKDEGLFSSQCKLRRVKYLNNCIENDHKAIKRKSRFRQWYQSLSTARSTIDVMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
635550..635584                     attL                                                                                 N/A                 GTTGATTGCTACACCCTACTCAAATCTAAATTTTT
635585..635596                     attL                                                                                 N/A                 CGCAACAGTGCC
635660..635703                     attL                                                                                 N/A                 ATCATTGGATGTGCAAAATACCTACCGAGGTAGCGACGCTTACG
complement(635938..636537)         hypothetical protein; AVI48_03315                                                    N/A                 PiscirickettsiasalmonisMNIFVKQATFLQPPCFFSVSNLAGKKITGIIGYIFFSVGVSYQINNSNQINFDLIQPNEDIILAFDGPSVPKTLTSFASPLTFLNEAIVHDYLYSDQSYDSIQGKNRYDFEKNSKIIWNDRIRKKYADDIFNMLLSTNSVISHIQKMMIFYSVRNFGKSSFRNKMELQRNKEVIKSYETLNYYVPKPPSDIYKKYQSFL
complement(636891..637667)         PHAGE_Sphing_Lacusarx_NC_041927: hypothetical protein; AVI48_03320; phage(gi100026)     1.16e-06            PiscirickettsiasalmonisMNINYNFSRSKSYNERARFLILHYTAGNFEISLKELTTNVSSHYLVPLNKKDDPSYPLNEVQIMNIVDEKNRAWHAGVSAFQDRVNLNDSSIGIEIVNLTKTIENFLPYPDYQINLIIELCQNILARHQDIIPQRVLGHSDIAFDRKSDPGPLFPWKRLYDSGIGAWFDDDTVLQYKQALQKGLVTLDTAYEKIQEYGYCVDRHNTYCKKINKNKLIRAFQMHFRSSKYDGILDEETASIMLALWTKYTASGRFAFDM
638012..638024                     attL                                                                                 N/A                 TTAAGAGTGAATT
638028..638756                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_03325; phage(gi23502708)          6.80e-49            PiscirickettsiasalmonisMVKRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEMTGERGLELERSTICRWVHEYGPEIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAALRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSRRCKLRRVKYLNNCIENDHKAIKRKSRFRQWYQSLSTARSTIDVMEAMRMVQKGQLRYIKKQDICAQNQLIDKLFGLAA
complement(638768..639160)         twitching motility protein PilT; AVI48_03330                                         N/A                 PiscirickettsiasalmonisMKYILDTHVLLWAAGNSSRLSVEAKFLLSEKDNELFFSAASLWEIAIKNSLGRKDFKVEPHLLRRGLLDNGYSELPITSEHAVGVSGLPAIHKDPFDRILIAQAISEGFTLLTALLRKVIVSFRKVIFLC
complement(639157..639402)         prevent-host-death protein; AVI48_03335                                              N/A                 PiscirickettsiasalmonisMQTVNIHEAKTHLSRLIEKASTGEPFIIAKAGKPLVKVVPLSAPDEAEVKRVGFLTGQIEVPDDFDTMGHDEIDQLFGGEE
639575..640252                     PHAGE_Spirop_1_R8A2B_NC_001365: putative transposase; AVI48_03340; phage(gi9626114)     4.00e-10            PiscirickettsiasalmonisMVYRHLNEKDRFYIEQRLSEGDSLRSIARALGFSPSTISREIKGHTPIDFKGLYCHRLTSRCAQEKRANAKQGQAFRQISEEAKMLIHQRLSTHTSPDVISQELIREHDIQVSESTIYRYIYDDREQGGELYKNLPHSGKPYKKKVNRGDQIKIPNRVGIEHRPAIADEKTEFGHFEIDTVVGRDHQSYLLTLVDKANKMCCIRKMPNKQAKTGTVAKNLDLSRV
640266..640278                     attR                                                                                 N/A                 TTAAGAGTGAATT
640282..641010                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_03345; phage(gi23502708)          1.43e-49            PiscirickettsiasalmonisMARRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEMTGERGLELERSTICRWVHEYGPEIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAALRFFKKAIAQPYVKSPRVVNVDKHASFPSAHQKAKDEGLFSSQCKLRRVKYLNNCIENDHKAIKRKSRFRQWYQSLSTARSTIDVMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
641057..641074                     attL                                                                                 N/A                 AATTTTTCGCAACAGTGC
641198..641644                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_03350; phage(gi23502708)          1.66e-15            PiscirickettsiasalmonisMLYRAIDKYGHTLDWMLSRHQNAKVALRFFKKAIGQPYVKSARVVNVDKHASFPPAHQKAKDEGVFSRRCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARSTIDVMEAMRMVQKGQLRYIKKQDICAQNQLIDKLFGLAASF
complement(641682..641900)         hypothetical protein; AVI48_03355                                                    N/A                 PiscirickettsiasalmonisMCKIPTEVATLTEDFQKGSKIIHIACEKDLYTKVMDDNQEFKSMLGDHIKVYPELFPAEIHNDYSRHCCEKL
641951..641968                     attR                                                                                 N/A                 AATTTTTCGCAACAGTGC
642347..644086                     PLD-like domain protein; AVI48_03360                                                 N/A                 PiscirickettsiasalmonisMKIKSLLIASIFIFCLQLTHASPLREIYHDIINQTDIEKKQEGITYSLTENNLLNDDFLIQFPGKEVWGKRVTDYPGFEFNPSLDLDFGLPHCHTQSQCMTNSSCSHLAIFDNGGNKKHIKMCNGYADQKLDRIYNAIVHAERFVDITTLESWPDLKFRSTLRNALTVLAKTGKKITVRMLAGVYQPFPSKQSSNEQIQRKFFANNYVTWYFLDDLIRDIKNIPESNLDIYVAGMRSCSGTCDPDVQMSLSWNHSKIINIDGKKIISGGLNMYSTDYLMKNPVFDLMIEIQGPVANKALGFTNLLWDFVKNNIYSFLNVIEYSARKENQYRIVKSDLPKHHLHANDSPSGSVEILSIGRTGYGLYTKDSAEKNNNSDYALYDLLSRAKKSIYLAQQSLKANFNIWPYDTTDQAHTNFISALAKLIVNKGNVYIVTSPYNDGSLLELGYLSSASPEELWNKIKNETIAMYPNLTESRINKKLCNKLHISEIRFNNHDTVWGDGSKITDHYKFMMVDRQMFYVGSQNFYPSGLQNYGHIINDTKAARIVRRDFWKPLWVYSAKTEYKPEQCTLSKALLRKI
644126..644169                     attR                                                                                 N/A                 ATCATTGGATGTGCAAAATACCTACCGAGGTAGCGACGCTTACG
644134..644436                     hypothetical protein; AVI48_03365                                                    N/A                 PiscirickettsiasalmonisMCKIPTEVATLTEDFQKGSKIIHIACEKDLYTKVMDDNQEFKSMLGDHIKVYPELFPAEFHNDYSLYGKGRCSKKLDNLQFKRIKIKTTGEIFCNSKELK
644525..644689                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_03370; phage(gi23502708)          7.76e-08            PiscirickettsiasalmonisVARRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLELERST
644858..645253                     PROPHAGE_Brucel_1330: transposase, putative; AVI48_03375; phage(gi23502708)          8.72e-11            PiscirickettsiasalmonisMLSRHQNAKAALRFFKKAIGQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSRRCKLRRVKYLNNCIENDHKAIKRKSRFRQWYQSLYTARSTIDVMEAMRMVQKGQLRYIKKQDICAQNQLIDKLFGLAA
645308..645319                     attR                                                                                 N/A                 CGCAACAGTGCC
645557..646369                     PHAGE_Entero_vB_KleM_RaK2_NC_019526: putative nuclease; AVI48_03380; phage(gi422937180)     4.98e-10            PiscirickettsiasalmonisMNKKLLWLALLPTLLQGCHILKEPENIIKEKQKTTLTHSNLCLLNTCPTGYSPKDQIANHKIIILANNPESKFADWVAYIVRPDYINGPSQKRKWQRDPTLPENSTLPPSAYKGVNTLFNVDRGHQAPLGSFKGADNYYVTNYLSNITPQQSKLNQGPWKRLENAVRTYAEKYGSVYVITGPYYEKDQKPVKSFPNYSETLMIPQGYFKVIATIKKDGIYASTFIMPQTATNKTHYCDTVSSLEEVHNLTQGLTVLAKKPVGNLNKLLGC
complement(646450..647178)         PROPHAGE_Brucel_1330: transposase, putative; AVI48_03385; phage(gi23502708)          2.74e-49            PiscirickettsiasalmonisMVKHKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAALRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGLFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKDQLRYIKKQNICAQNQLIDKLFGLAA
647200..647234                     attR                                                                                 N/A                 GTTGATTGCTACACCCTACTCAAATCTAAATTTTT
661982..662009                     attR                                                                                 N/A                 CGCCCTCCGTCATCTGAAGTGCAACACT

#### region 3 ####
1627991..1628007                   attL                                                                                 N/A                 CTCACCTTACGCACTGA
1628289..1628354                   attL                                                                                 N/A                 TTGTGCTCTCTGCTTAGAATTAAGCAGCTAATCCAAATAATTTATCAATGAGCTGATTTTGGGCAC
complement(1628308..1629036)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; AVI48_08515; phage(gi100027)     2.75e-53            PiscirickettsiasalmonisMVKRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGNTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGLFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
complement(1629187..1629516)       hypothetical protein; AVI48_08520                                                    N/A                 PiscirickettsiasalmonisMAIINDVEKDIDSSGLVLQRQKEVKEELLKLSSNQTSTPVPCLDQNNIAKGRDIGKLNTLGQLSSFAWKPGENNQGSQQATPFQRQSESRSDQEHQENERATKKCCTIM
1629865..1629878                   attL                                                                                 N/A                 TGTTGCGAAAAATT
1629888..1629931                   attL                                                                                 N/A                 GTAGGGTGTAGCAATCAACGGAAGTTAAGAGTGAATTGCTGTGG
1629928..1630656                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; AVI48_08525; phage(gi100027)     3.16e-53            PiscirickettsiasalmonisMVKRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGNTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
1630886..1631104                   hypothetical protein; AVI48_08530                                                    N/A                 PiscirickettsiasalmonisMSPQQEKLFWKKFERELGFDSGEAALSHLSAGRPIYYGDDRYSDAVIKEYPDGTKQLVRFDDNDNEIIIEEL
1631104..1631703                   zeta toxin family protein; AVI48_08535                                               N/A                 PiscirickettsiasalmonisMAQPQLWVIAGPNGSGKTTLAQRYFKDKLPVVNPDEIAKELDPNDPHQLKTATKAGKLAAKQRKDYLDQSKSFAFETTFSGKGELVLMQKAADAGFKVNLVFISTDSPTISRGRIRQRVSEGGHHIPSQDVIRRYHRSLINLPKGLSIADRSFILDNSRSRLRLLLSRENSKVKSLSKSLPQWLKGVNLGFELKKGLQR
1631700..1631948                   hypothetical protein; AVI48_08540                                                    N/A                 PiscirickettsiasalmonisMSVEVEHSLACDGHERDRDFLTTPEIQQLLEGSKKGRYPIRDQARKRRYLGRYFAHPMMQNRRAKRDDYKPSAVRVTQRCVP
1632126..1632455                   hypothetical protein; AVI48_08545                                                    N/A                 PiscirickettsiasalmonisMLLYRHGLRESELCNIRLNNLDLKTAMLWVQRLKNGLSTQHPVTSDEIRLLRRYLATRKDEKSPWLFLSERGGPMGRHTIIYLVKKAAQQAGLFKVTLIWQPFSRQIFN
complement(1632448..1633026)       PROPHAGE_Escher_MG1655: IS3 transposase B; AVI48_08550; phage(gi16128284)            4.17e-66            PiscirickettsiasalmonisMKRKFKVTTDSKHRLPIAKNVLDRNFSATGPNQKYVGDITYIRTQQGWLYLAVVIDLFSRKVVGWAMEDHMEASLVNDALLMALWKRKPKAGLIWHSDRGSQYASESHREILKDHQIKQSMSRKGDCWDNAVSESFFHTLKTELVHHMNFKNRQEAKSAIFEYIEVFYNRKRIHSANDYLSPEEYEHNQKIS
1633064..1633079                   attL                                                                                 N/A                 AGGTTATTTTCTTGTG
1633140..1633259                   integrase; AVI48_08555                                                               N/A                 PiscirickettsiasalmonisMEANFCLEALNQALEQGQPEIINSDQGRQLTGNGWISALK
1633328..1634056                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; AVI48_08560; phage(gi100027)     2.53e-52            PiscirickettsiasalmonisMVKRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGNTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGLFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKDQLRYIKKQNICAQNQLIDKLFGLAA
1634452..1635444                   PHAGE_Escher_PA28_NC_041935: hypothetical protein; AVI48_08565; phage(gi100053)      2.71e-21            PiscirickettsiasalmonisMSQKRKKPSAEFKTKVVLEVIEGDQTLNQICSKYELVPKTVQNWKKVFLANASLAFNIDSAVAEFKDEIKTKEKEVNELHRQLGKRTAELEWAAKKLKSLDYETRKCLIESEPKNIPVTRQCELINFNRSNCYYKSVRCTKDKMELLRAIDRIYTETPFYGYRKVHQQLIEGGYSVGLNRVRNYMNELGLKVIYPTKKVCTTLAHPEHKKYPYLLRDLEVYKPNQVWSTDITYIRLDGGFVYLAAVIDWHSKAILSHKISTTMDSSLVINVLKQALERYGTPEIFNTDQGSQYTSHDHTQLLIDRGIKISALLRKVIGSFRKVIFVCSRP
complement(1635441..1636100)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; AVI48_08570; phage(gi100027)     6.26e-47            PiscirickettsiasalmonisMVRWYGRYALSYRDLKEIAAERGLELERSTICRWVHEYGPEIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYAHTLDWMLSRHQNAKAALRFFKKAIGQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSRRCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARSTIDVMEAMRMVQKGQLRYIKKQDICAQNQLIDKLFGLAASF
1636332..1636344                   attL                                                                                 N/A                 TTCTGTTCCGTTG
1636486..1637214                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; AVI48_08580; phage(gi100027)     3.79e-53            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
1637921..1639132                   PHAGE_Escher_RCS47_NC_042128: 3'phosphatase, 5'polynucleotide kinase; AVI48_08585; phage(gi100070)     9.70e-16            PiscirickettsiasalmonisMQINDHEIFGVDDAAELMQESNEIGTKVLERLLAESIDPENNKKLKRWGITEAADMIGRSPQHIRINEGKGKRFGLPDKDENGKRVYSLDRINKIRDIEGTRYLRPKGSDCMITSIANFKGGVAKTTTTIHLAQKLALDGLKCLVIDLDPQATLSFLFGLNPDIELSEEDTINLSLTEDPSLIHNVIRPTYTDGLDLIPSNLSLQDTEFLLMSDNINKKLGNSISRLKSALEFVKDQYDVILIDCPPNNGSLTLNALYAVTGLIVPVLPAITDYASYIRFAKTLSNLFNSREGNKSLKYFRILITRHTKTTSSIRAENLIRHNFGDFVMSNSMINTVDVQNATSEIKTIYERKALGSESKSHKRAIEAVNAVNDEIINAFKSIWRTEANANMSKIKSAKKKRL
1639200..1640168                   hypothetical protein; AVI48_08590                                                    N/A                 PiscirickettsiasalmonisMTSSTKSSGSKVIDRLLGQNDLSLSSKKSRALNKKNILEYDSFNKIDIGSSEVEAESYILVDPFKCINWGYSDRNNFDFGNQDGLELSIKENGQAVPAILRKHPDKPEHFEIISGERRWTAIKNLRKLNNSLMLKAIIIDVDDNEAALIQINENQYREGLSEYSKGINYSRLINNGVLTRKELEKNLEISKSAVGNLLSFADLPEDLIISIKDMTKVNSKTSSSIRAFLNSGGSLEDLINCSEIIRSGASWRKINEKITGDSVYQQSKKVVSSDGRHLFSWRKDPNGNLSVSFPNNIINNVNHSDLEILLSDGLKSLLNSKV
1640540..1640779                   PHAGE_Pectob_CBB_NC_041878: hypothetical protein; AVI48_08595; phage(gi100498)       9.94e-10            PiscirickettsiasalmonisMGKIDKLLEKMKTNPAGWTISDLYRVAGQYGVVYREGKGSHVVFNFGYVVLTVPSKRPIKPIYVKKFVALIEDQGNKYD
1640772..1641125                   PHAGE_Acinet_YMC11/11/R3177_NC_041866: hypothetical protein; AVI48_08600; phage(gi100076)     8.18e-09            PiscirickettsiasalmonisMINLDYPFNVHRLKEEDGGGYLVEFPDLPGCTADGETIEEAIADAKEACSSWIEAAREFGREVPQPKSDNDFSGQWRVRTPKSLHAALSRKAKEENVSLNTLVVSLLAEGIGKKQIV
1641435..1642028                   methyltransferase; AVI48_08605                                                       N/A                 PiscirickettsiasalmonisMEVAAGYGYISEKVYPFSKRLTINDLDEKPLISFKSKFSDTSKLCIVSGNILDCSFEENSLDAIFCSRLIHFFNPDEVKVFFENCHKWLSQHGKLFLTCETPYLNNWKSFIPVFELKKNNGIKFPGYVTQISDYESLGHSENLPKYMNFFDDDVLETVVNQFNFKVDECFLFSRKGFLPDEITFDGRESVGLIAEKV
1642033..1642491                   hypothetical protein; AVI48_08610                                                    N/A                 PiscirickettsiasalmonisMKPMKVIRSVKENLIEFVNDKVDLCKLINFRFDYKKMEVVLILKIAASPIPFEMTAVEIASCDHWINQFSRLEVRLITYLACCELNDLMPLMLISHRVDSGKVILTFFDNESKSSLDTDIEDFVKNEMYMSRVKNDQKNVSVATSVGILHIQ
complement(1642974..1643438)       hypothetical protein; AVI48_08615                                                    N/A                 PiscirickettsiasalmonisMDEAGMDDTERYAYGHSAKGKRCYAEKPGKKSIRINFIGGLRGKQFIAPMMVEGYCNANVCQAYIDQCLIPCLSPGETVIMDNASFHKSKGVKEAIEDAGCHLLFLPPYSPDLNPIEHVWSPLKNRVRMKLDQDEINLETALSQVMKSMSETIR
complement(1643495..1643815)       hypothetical protein; AVI48_08620                                                    N/A                 PiscirickettsiasalmonisMIDEGIPITQISKLLKISRDTLHRWKNRRDHTGDVKARFGYQTGYNHKISDMKEFQKFIDQNPGKTHQQLADLYPVEMSAKTMGVWIKKLGYTRKKRASDTKNVMH
1643821..1644336                   integral membrane family protein; AVI48_08625                                        N/A                 PiscirickettsiasalmonisVLEFLSHNCKEKASFFLIVFFNLLILCQKLLIQRYILPGGIFIFPLTFVINAVAGEVYGYSEPKKFIWLGFLSEIMFAGVTYAVTHMSYPSYFKESQAYNIVLDPAFRYAFSSLIGIFVGEFINIYILSKMKILMQGKNFLLRFLISNAIGQLFLSFIVDILIFFGKITVAQ
1644565..1644795                   hypothetical protein; AVI48_08630                                                    N/A                 PiscirickettsiasalmonisMLGDFASLDVQNTYRGSDAYVFKIAFDGYFWKVMIAIIISFPMWYMIKWLKRSEKVDVYDYNTNYNPFSIRTMKTS
complement(1644827..1645063)       PHAGE_Escher_P13374_NC_018846: prophage repressor CI; AVI48_08635; phage(gi410491627)     2.24e-05            PiscirickettsiasalmonisMSPIIPIDSLLIIDPSKEARDGDYILLLVGKNILLRRYLDAGDTKYYELLNPKFDGIKKEMTKKNRILGVTISVELKL
1645074..1645086                   attR                                                                                 N/A                 TTCTGTTCCGTTG
1645209..1645224                   attR                                                                                 N/A                 AGGTTATTTTCTTGTG
1645309..1645352                   attR                                                                                 N/A                 GTAGGGTGTAGCAATCAACGGAAGTTAAGAGTGAATTGCTGTGG
1645349..1646077                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; AVI48_08640; phage(gi100027)     3.79e-53            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
complement(1646572..1647009)       hypothetical protein; AVI48_08645                                                    N/A                 PiscirickettsiasalmonisMRKLALALSSILAITTAATLTPAIAADRTNLTMSAIVITPLNIVQTRAMNFGYIYKPASGTATKRSAALFRVTGEGNANVRISHAPAAIIANGPNRLTVRLSGAGTSRLPASGAMTKAIGGSVTVASTTAKGRYVGSTVVTASYL
1647436..1648827                   class II fumarate hydratase; AVI48_08650                                             N/A                 PiscirickettsiasalmonisMIKAVRIETDSMGEIEVASDKYWGAQTERSLHHFAIGHDIMPRAMIRALGVLKKAAALTNESLDKLPAEKAKLIVQAADEVISGQLDAHFPLRVWQTGSGTQTNMNSNEVIANRAIEIAGGEKGSKDPVHPNDHVNMSQSSNDTFPTAMYIATVETIVHHLLPEIKALRDAIADKQTEYQHIIKIGRTHLQDAVPLTLGQEFSGYVTQLNQAIGYIENNLTHLYELALGGTAVGTGLNTHPKFAKKAAKFIAKETGLKFSSAENKFAVLAAHDAMVQISGSLKTLAAALMKIANDVRWLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEAMTMVCVQVMGNDAAVGFAGSQGNFELNVFKPVMVHNVLHSIQLLADASRSFKEFCIEGLQANNERIDYFLKHSLMLVTALNQVIGYDKAAMIAKTAHKEGSSLKEACLKLGYLNADEFDQAVNPANMIAP
1649270..1650763                   lysine transporter; AVI48_08655                                                      N/A                 PiscirickettsiasalmonisMETNQTLQRNLKPRHLIMLALGGTIGTGLLLASGGAVHSGGPGGAILGYLLVAVIVLFVMTSLGELTAFSPTTGSFCDDAARYVDPSFGFAMSWNYWLNWVFVVASEVIAAGLVMQFWFPHVDVWIWSALFFLLILAINLVAVKLYGEVEYWIAFIKVAAVIIFITVGTLMIFGLVGSQGSVGFDNITLGDAPFHHGLFGFFSVFLIAGYSFQGVELMGVAAGEADEPKKTIPKAVKTVFWRIVLFYILAIAVISFLIPYTDSNLVNAHSSVASSPFTIVFENAGIKFAASLMNLVVITAILSAANASMYTASRMLWHMGKAKEASGSFQRVNKYGVPVIGVIVTALISVVLILASTYHGGLIFSWLVNMVSYAGYIAWFGICLSHYRFRRAYLLQGKDVNQLPYRSRWFPFAPITAMVLIIAILIGQEVMDIINNEASFSGFIINYCGIVLFLVLVIIHKFIKKNKLIPLNNIELTEESVVERGADTSGYSELKLN
1650959..1651714                   hypothetical protein; AVI48_08660                                                    N/A                 PiscirickettsiasalmonisMSMAINNKKELESFLRKNNLYNDKVEKELKKDDFLLKAAQALDNMGELDSGNWQKIMKSRSYRYALGSLYDAGLLGESEFENTIDEILDLIDDEANKDMRWAISFLGEQDLLDGNNCQILMESDSLQKTLAILAETDIEPQTLNQEDVVKLQEPLLQHALAAAHKVEKFESMVFDEDDFDDLKDDEQAQKKLLIDSDWTFALQLQQEEMKAGGFTDTNKFEVEVRRQAAVFLKHTHENSQEKLIKYGFEME
complement(1651758..1652726)       hypothetical protein; AVI48_08665                                                    N/A                 PiscirickettsiasalmonisMTKKAPPNPKLPPKNNTTLWQWLKFQLVACKLSLSKLAEHPWGFIITNCVIALGLSLPIILFLLLKNISPLQSSLTGTTQISVFTHTKATDQHIKTLGKLLEKNPNLKRIDYIGPKEALDEFKAFASFQLAIKSLAENPLPGVYVVEPKDHFIEQHQLTRLAKQLSQLNHVESVQLDLAWAERLMRFTTLSKRIFFSVSILLGLALTLIIYNSLRLLLNQSHDEIRIMAILGGTRHFIQRPYLYLGAFYGFTSALLSLLIIQLIYWWLKAPVDSFSRLYYSQMGLQNINLLEAGILIIISMLLSSLSAWLTTRHYLKKLQLC
complement(1652680..1653375)       PHAGE_Pseudo_nickie_NC_042091: hypothetical protein; AVI48_08670; phage(gi100008)     3.20e-05            PiscirickettsiasalmonisMIEFHQVSKIYPGKRVGLNNISFKLDQGELAFLTGHSGAGKSTLLKLIAHIELPTLGEIIVDKRNVARIPQRDLPFYRRKLGMILQDPILLYDRSVFHNVALPLIMAGVNHKELKTRVSAALSHVGMSKKSQLMPRELSAGEQQRINIARTLANMPSIILADEPTGNLDPELARTIMQLFHTLSQIGVSIIIATHDVSLVQEHQQRIFHLEQGALVSDEKSPAKSQIAAEK
1653516..1653606                   tRNA                                                                                 N/A                 GGAGGGATGGCAGAGCGGTTGAATGCACCGGTCTTGAAAACCGGCAAGGGTTAATAGCCCTTCCAGGGTTCGAATCCCTGTCCCTCCGCCA
1653717..1653730                   attR                                                                                 N/A                 TGTTGCGAAAAATT
1653758..1653823                   attR                                                                                 N/A                 TTGTGCTCTCTGCTTAGAATTAAGCAGCTAATCCAAATAATTTATCAATGAGCTGATTTTGGGCAC
complement(1653777..1654505)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; AVI48_08680; phage(gi100027)     3.79e-53            PiscirickettsiasalmonisMGRRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEIAAERGLEIERSTICRWVHEYGSQIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYRAIDKYGHTLDWMLSRQQNAKAAMRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEGVFSSQCKLRRVKYLNNCIENDHKAVKRKSRFRQWYQSLSTARPTIDIMEAMRMVQKGQLRYIKKQNICAQNQLIDKLFGLAA
1660992..1661008                   attR                                                                                 N/A                 CTCACCTTACGCACTGA

#### region 4 ####
1966223..1966234                   attL                                                                                 N/A                 GAAACAATTTTA
complement(1969737..1970291)       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: transposase; AVI48_10225; phage(gi971749639)     2.78e-79            PiscirickettsiasalmonisMKGVGRIYQQTFVDTYSRVAFACLYTEKNAVTAAHALNESVIPWFEERDTPLLRILTDRGTEYCGKIEHHAYQLYLAIEDVDHTRTKARSPQTNGICERFHRTMKQEFYDIAFRKKVYNSLEELQVDVDEWLIKYNQHRPHSGKYCYGKTPMQTFQDSKHLAQEKIINKNVQSDSLINQTNVVR
1970817..1971722                   PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: transposase; AVI48_10230; phage(gi971749639)     3.92e-26            PiscirickettsiasalmonisMNLKAKRDISRKLKVLNHALESKNVSRTCRYFGVSRESFYTWRRAYEQDGEEGLINNKPCPENPNLRIDKAIEEKIVYLRTTYHFGPLKISWYLERFHDIKVSRSGCYYILLRNRLNRLPENIRKRSMPQFKRYEKKVPGHHVQVDVKFLFFNDEDGKRIKRYQYTAIDDATRIRALKIYSKHTQANAIDFINYVVDKFPFRIKVIRTDNGSEFQAKFNWHVQDLGMDHVYIKPGTPRLNGKVERSHRTDKQEFYQLIDYNGDVDLHDKLAEWEAFYNFQRPHSAHSGKTPYEMLKTKLGL
complement(1971811..1972740)       hypothetical protein; AVI48_10235                                                    N/A                 PiscirickettsiasalmonisMTLEQWWNSRTPAEKSIVAAIIAGFNLQIIEKNILAAQKAIFLDYLREQLANYNIEVPDLDEEEAEEAADKIQKLLEEEELNLQLEKKPKQSLPAEGFSFSDLEPKTLTAMSREEFHQLLLSPRQIGIIVTVGEILKKEDGFNIFDYQVNNGPKLDAQLTQIAPGTPTPDTPIKIQAQFHCPLRQSIPLEEQEEEKNKQATTLAQLVESVCTMNQAKRCPVRLNVQAEEHEVSPLAQAFICALQQRVLLKQLQHLSFNNQVFDYSHLLPNTTPFQTQQQGAEGYTSSEPELKQEPDQEPEQEQEQKLAL
complement(1973832..1974638)       hypothetical protein; AVI48_10245                                                    N/A                 PiscirickettsiasalmonisMPTTSKLKAYLNEPNSTNKKHALEEMFPLLNEAYENVKKQRPNKPFGADEIWPEIQIIFSAHYGELSSQLSILQYFNLYTLFDDLTESSCDKIQHISHGEFCQPVVQVINLTTPYLSTKAIPQFIENSNQCIDEFAKWGVTHDNDEITRAAHVLATKLAGCRDEFIQRIIQNKETNQGYKITDDVPNYRRKIREIIESSTETKLLSSQQDWQGIIGNVLIGLTGIGLVALAVKAAHSQATTGQASLFFDTNAAQKAEQLGEDLLLMER
1974981..1976873                   PHAGE_Bacill_PBS1_NC_043027: tail sheath stabilizer and completion protein; AVI48_10250; phage(gi100209)     4.21e-92            PiscirickettsiasalmonisMTKNNEYNADAIEVLTGLEPVKRRPGMYTDTLRPNHLGQEVIDNSVDEAMAGFANKLHVILYEDHSLEVIDNGRGMPVDIHPERNVSGVELILTKLHAGGKFSNKNYRFSGGLHGVGVSVVNALSKRVDIEIKRGGQRYHIAFENGDKVEDLTVVGKALKKDTGTRVRFWPDGHYFDSSQFSIMRLKHTLRAKAVLCPGLEVIFENRQGDESFNWHYAAGLVDYLKGVVNEYDPVPKLPFEGAFVAETETADWAMVWLPETTGVMAESYVNLIPTAQGGTHVNGLRLGLFEGMRDFCDLHQLLPRGVKLAADDVWEHCAYVLSVKMQEPQFSGQTKERLSSRQCAAFVSGVVKDALALWLNQDVEQGKAIAEIVIRNAQKRVQASKKVVRKRITQGPQLPGKLADCVSQDVERGELFLVEGDSAGGSAKQARDRDYQAVMPLRGKILNTWEVASEQVLGSQEVHDIAVALGVDPGQHDLSGLRYGKVCILADADSDGLHIATLLCALFLRHFKALVEQGHVYVAMPPLYRVSIGKEVFYALDEEEKEGILDRIQAEKKKGKLVVQRFKGLGEMNPLQLRETTMAPETRRLVRLMVDDDAATFSLMDMLLAKKRAQDRKKWLEEKGNLAAV
1977160..1977564                   hypothetical protein; AVI48_10255                                                    N/A                 PiscirickettsiasalmonisMPELTFLKIEGYHPSPTQLARVVQEAADESGEKLGKHYFDLQGQLLAEGKLSIKDENLQERKLSKRSVLVAVDLVERAVGEGEEAKLEFFYQQLAGTLPSPSLKERLKTNFDRLTCSDQRFSIIPIHTLRAMEC
1978530..1979126                   PHAGE_Sodali_phiSG1_NC_007902: ParA-like protein; AVI48_10260; phage(gi89886027)     4.87e-13            PiscirickettsiasalmonisMHLLDTDIRQRSSSKWIDLRNAKIENGEDLPIIHNTSKTGNIKPAIADLSLRHEVVMIDTQGRDNKAARFALLNSDLILIPMQANYFNLATLENICELLEETWSPEKPRVVRLVFTQISTHVFNNDLIEAKKYIDAYVDIHEDENFDILKSFTNVRSAYGKAESSGLGVVEGTDSKAKAEIQLILQEALESLNEPESV
1979107..1979412                   hypothetical protein; AVI48_10265                                                    N/A                 PiscirickettsiasalmonisMSQNQSKFPAPAKKVKREKISSKATKKELEITSKGDDSYIERNELDPNAPPTKGYTVPLNEYELTLLLKISEKHDRSQRKQIRRFVIDALEQEAKTLGIGI
1979851..1980117                   PROPHAGE_Salmon_LT2: transposase; AVI48_10270; phage(gi16766077)                     6.86e-31            PiscirickettsiasalmonisMKRSKLTESQIVAMLNEGQAGVKVEDICRQYGIAKSSYYKLRSKYQGMGVSDLQRLKELEDENRRLKQMYADISLEHKVLKDIVEKKL
1980168..1980953                   PROPHAGE_Xantho_306: ISxcd1 transposase; AVI48_10275; phage(gi21242257)              5.43e-70            PiscirickettsiasalmonisMSGNKACKMCRIGRSVYRYQPKKQVVDTKIKKVLTDLAKVHHRWGFDKMMAKIKENYAWNHKRVYRVYCELKLNLRIKPRKRFSPREAKMLVQPIVSNHCWSLDFMSDTLSNKRKFRTLNVIDDYNRECLLIEPAFSLPSMVVTRLLDQVAESKGYPEVIRSDNGPEFISSDFTKWAEQHNILLHHIQPGKPAQNGFIERFNRTYRQDILDAHWFYNLEEVREITEPWVDQYNNERPHESLANLSPINFKKMRDKTTEIPL
1981267..1982217                   PHAGE_Haloru_HF2_NC_003345: deaminase protein deoxycytidine triphosphate-like protein; AVI48_10280; phage(gi18138455)     2.29e-17            PiscirickettsiasalmonisMYKTYNELKCLREQVIIDVDKPEFSGDTQIKVCSYDLRLGNIFWKSKRKGKIDLSFTKIYQLSPRRLWKKITLKKEGKITIKSGEMLLGRTHEKIAIPPELVGKITVRSSYARLGLWTACNCDLVNPGYEGHIPLELINTSKHDLTLKPYLPICQLFLMKLDGEIDSCYQSEIFQSNYIDDDGGPSKWWRDLLNKKIESDGCLNSYALDEIKLEIKDLDDDILNRFEDFIDKRKFDNSQDLLEQFSKSEKKAKRRNRILYLICGAVEVVLLGLIANSLFAKSILSFLIFLVIFLVILIPIIMYFDTIKDNNFYERK
1982204..1982713                   hypothetical protein; AVI48_10285                                                    N/A                 PiscirickettsiasalmonisMKENKTNIYIACALTNMKKSVFANYSNHIKQLALWLKQKKYSVKYALEDSDPQLSLIEKGEQPALCYKWDKEMVEKSDVILADVTFPSIGLGIEMQIAAENDIKLILMHSSDWSECADDKKYETEEHQHYHVQIGSDNISLMALGLPNVFGVINYRSKEDLFNQLENSL
complement(1982719..1983615)       PHAGE_Erysip_SE_1_NC_029078: hypothetical protein; AVI48_10290; phage(gi985758871)     5.66e-14            PiscirickettsiasalmonisMKASFNKPPLSFEKQLQLLESRGMVIPDKDRALHYLENLNYYRLAAYWIPFQKDRVSHTFYEGTSFDDVLNLYIFDRELRLIVLDAIERVEVSVRTQLCYCLAHEHGSHAHLQPEAFFNTNKYNVLISKLKDEYRRSNESFVNHYREAYTETLPPIWVSVELFTFGQLSMCYQNIKGRHLKQKTASHYNIDEKLLGSFLHQLSFIRNLCAHHSRLWNRDLTVTMKIPRKKAPKDLLISVDLNENARKIYNTLTMMLYFMNKVNPNHHWKDRFFSIVNNHNIDLNKMGFKKEYQQGLWI
complement(1983968..1984648)       Zn-dependent hydrolase; AVI48_10295                                                  N/A                 PiscirickettsiasalmonisMIFRQLFDNQTSTYTYLIASDYGKESIIIDPVDSKIDSYIQLLSELSLKLVYSIDTHVHADHVTGSGLLMQQTNCKIIMGKQSKAENISLKANENEPIKIDNLTIQPIYTPGHTDDSYCFLLNNMVFTGDTLLIRGTGRTDFQNGNPFSQYDSIFNKLLTLPDQTLVYPGHDYNGNTVSTIFEERLFNPRLQIKSKDEYAELMSNINLPKPKNIDIAVPKNLNCGM
complement(1984712..1985302)       PHAGE_Caulob_CcrColossus_NC_019406: putative tyrosine recombinase; AVI48_10300; phage(gi414088238)     1.32e-25            PiscirickettsiasalmonisMGLSKQARILSERQERIIITHLKSTIAPQRNLVLFLLSIKAGLRAKEIAHIQWKMVFNSDGQIGDCIHLTNDVSKGDQGGRIIPLNQQLKKALITLFQSNPPHHENVPIIISQRKAAFTPQTIVNWFSRLYADLEFNGHSSHSGRRTFVTRAAKNVIRAGGSLRDVQQLVGHSSLQTTQHYIEGDSEAKKKLVELI
1985505..1985783                   toxin; AVI48_10305                                                                   N/A                 PiscirickettsiasalmonisMHIEWSEEKNKKLKAERGFSFEDVVAAISLGKLLDNRAHPNPEYQHQNIAVVNIEGYAVMVPYVTKEDGTLFLKTAYPSRKATKHYLGEGDD
1985776..1986048                   hypothetical protein; AVI48_10310                                                    N/A                 PiscirickettsiasalmonisMIKKNIKLDNEEQAIEDSFDAFLQGGSLDAVALIEAAKNTGKKSKPVSLRLTESDFTKAHAKALEEGVAYQTLLTSVIHLYLSGMLVRKS
complement(1986141..1987223)       PROPHAGE_Shewan_MR-1: ISSod13, transposase; AVI48_10315; phage(gi24375047)           4.09e-160           PiscirickettsiasalmonisMTSLSEKIIKPKLGVLELAKQLGNVSKACEVMGYSRDSFYRFKKLYETGGEEALQEISKKRPNVKNRVPEHIEQAVIDLAIENPALGQLRASNELLQRGVIVSSSGVRSVWLRNGLETFKKRLKALEAKSAQDGILLTEEQLQALEKAKQEKEAHGEIETEHPGYLGSQDTYYVGTMKGVGRIYQQTFVDTYSRVAFACLYTEKNAVTAAHALNESVIPWFEERDTPLLRILTDRGTEYCGKIEHHAYQLYLAIEDVDHTRTKARSPQTNGICERFHRTMKQEFYDIAFRKKVYNSLEELQVDVDEWLIKYNQHRPHSGKYCYGKTPMQTFQDSKHLAQEKIINKNVQSDSLINQTNVVR
1988401..1988412                   attR                                                                                 N/A                 GAAACAATTTTA
