gi|00000000|ref|CP013832.1|  Escherichia coli strain CD306 plasmid pCD306, complete sequence. 145221, gc%: 52.87%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
3612..3623                         attL                                                                                 N/A                 ACCGCTGCCTGA
5965..7680                         PROPHAGE_Brucel_1330: transposase, putative; AVR67_25435; phage(gi23501616)          9.80e-34            MLNTRVHQSEVSMATDTPRIPEQGVATLPDEAWERARRRAEIISPLAQSETVGHEAADMAAQALGLSRRQVYVLIRRARQGSGLVTDLVPGQSGGGKGKGRLPEPVERVIHELLQKRFLTKQKRSLAAFHREVTQVCKAQKLRVPARNTVALRIASLDPRKVIRRREGQDAARDLQGVGGEPPAVTAPLEQVQIDHTVIDLIVVDDRDRQPIGRPYLTLAIDVFTRCVLGMVVTLEAPSAVSVGLCLVHVACDKRPWLEGLNVEMDWQMSGKPLLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAVARVGVPAVVTRATSFLVDFLPILRRTLTRTGFVIDHIHYYADALKPWIARRERWPSFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVTLWEQRQALAKLRQQGREQVDESALFRMIGQMREIVTSAQKATRKARRDADRRQHLKTSARPDKPVPPDTDIADPQADNLPPAKPFDQIEEW
7683..8543                         transposase; AVR67_25440                                                             N/A                 MDEYPIIDLSHLLPAAQGLARLPADERIQRLRADRWIGYPRAVEALNRLEALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRTHPASSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRPRPRLPEMEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVGTRDAYLAIRSDDQLENRFEPMMLPVWEANDDCCSLLASFAASLPLRRPSPIATLDMARYLLTRSEGTIGELAHLLMAAAIVAVESGEEAINHRTLSMAC
complement(8594..10138)            PROPHAGE_Escher_MG1655: IS150 transposase B; AVR67_25445; phage(gi16131429)          1.07e-64            MYSYEDRLRAVRLYLKLGRRMSATLRQLGYPTKNSLKAWLAEFERNQDLRRGYQRIKRQYTDEQKQRAVDHYIEQGYCLSHTIRSLGYPSREALRAWIRDLRPEFARTVVGSSAPTVARSRLEKQQAVIALNLRVGSAKDVADTVGVSRPTLYNWQHRLLGKVPLKPMTKKKGDTSLEQRHEALLRELAELESQNQRLRMENAILEKASELIKKDMGINPLELTSREKTKVVDALRVTFPLANLLCGLKLARSTYFYQRLRQTRPDKYTQVREVIRTIFEDNYRCYGYRRIDSALRLGGMRVSEKVVRRLMAQERLVVRTPRRRRFSAYAGDPTPAVPNLLNRDFHASAPNTKWLTDLTEIHIPAGKVYVSPIVDCFDGLVVAWNIGTSPDANLVNTMLDHAVRTLRPGEHPVIHSDRGSHYRWPAWIRRTENAQLTRSMSKKGCSPDNAACEGFFGRLKTELIYPRNWQHVTLKDLMTRIDAYIHWYNERRIKVSLGGRSPIEYRHAVGLMSV
10261..11784                       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; AVR67_25450; phage(gi557307612)     1.28e-23            MINVAILSAIRRWHFRDGASIREIARRSGLSRNTVRKYLQSKVVEPQYPARDSVGKLSPFEPKLRQWLSTEHKKTKKLRRNLRSMYRDLVALGFTGSYDRVCAFARQWKDSEQFKAQTSGKGCFIPLRFACGEAFQFDWSEDFARIAGKQVKLQIAQFKLAHSRAFVLRAYYQQKHEMLFDAHWHAFQIFGGIPKRGIYDNMKTAVDSVGRGKERRVNQRFTAMVSHYLFDAQFCNPASGWEKGQIEKNVQDSRQRLWQGAPDFQSLADLNVWLEHRCKALWSELRHPELDQTVQEAFADEQGELMALPNAFDAFVEQTKRVTSTCLVHHEGNRYSVPASYANRAISLRIYADKLVMAAEGQHIAEHPRLFGSGHARRGHTQYDWHHYLSVLQKKPGALRNGAPFAELPPAFKKLQSILLQRPGGDRDMVEILALVLHHDEGAVLSAVELALECGKPSKEHVLNLLGRLTEEPPPKPIPIPKGLRLTLEPQANVNRYDSLRRAHDAA
11774..12556                       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; AVR67_25455; phage(gi557307613)     5.30e-44            MQHEGHVRILKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFSQSLVNEATVKQLHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDELGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRFKHSSTQNKQEEKQTRKLKIET
complement(12732..13232)           acetyltransferase; AVR67_25460                                                       N/A                 MDSEEPPNVRVACSGDIDEVVRLMHDAAAWMSAKGTPAWDVARIDRTFAETFVLRSELLVASCSDGIVGCCTLSAEDPEFWPDALKGEAAYLHKLAVRRTHAGRGVSSALIEACRHAARTQGCAKLRLDCHPNLRGLYERLGFTHVDTFNPGWDPTFIAERLELEI
complement(13360..14199)           dihydropteroate synthase; AVR67_25465                                                N/A                 MVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHAIGNGADYVRTHAPGDLRSAITFSETLAKFRSRDARDRGLDHA
complement(14193..14540)           PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; AVR67_25470; phage(gi311992758)     9.11e-09            MKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAFYFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLARSPSWKSLRRPTPW
complement(14746..15534)           adenylyltransferase; AVR67_25475                                                     N/A                 MGEFFPAQVFKQLSHARAVIERHLAATLDTIHLFGSAIDGGLKPDSDIDLLVTVSAAPNDSLRQALMLDLLKVSSPPGDGGTWRPLELTVVARSEVVPWRYPARRELQFGEWLRHDILSGTFEPAVLDHDLAILLTKARQHSLALLGPSAATFFEPVPKEHFSKALFDTIAQWNAESDWKGDERNVVLALARIWYSASTGLIAPKDVAAAWVSERLPAEHRPLICKARAAYLGSEDDDLAMRVEETAAFVRYAKATIERILR
complement(15665..16138)           PHAGE_Erwini_vB_EamM_Caitlin_NC_031120: hypothetical protein; AVR67_25480; phage(gi100060)     2.54e-22            MKISLISAVSENGVIGSGPDIPWSVKGEQLLFKALTYNQWLLVGRKTFDSMGVLPNRKYAVVSKNGISSSNENVLVFPSIENALKELSKVTDHVYVSGGGQIYNSLIEKADIIHLSTVHVEVEGDIKFPIMPENFNLVFEQFFMSNINYTYQIWKKG
16296..17255                       integrase; AVR67_25485                                                               N/A                 MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEGTVAKLAMRQPFVLFKGLTFQKLCLPGAFRPGDHHNKMLRPGLCVVHASPQYL
complement(17146..17850)           PROPHAGE_Brucel_1330: transposase, putative; AVR67_25490; phage(gi23502708)          1.98e-53            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
18011..18022                       attR                                                                                 N/A                 ACCGCTGCCTGA

#### region 2 ####
14565..14576                       attL                                                                                 N/A                 GCTTATTATGCA
25586..26281                       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; AVR67_25525; phage(gi371496158)      4.19e-36            MSVTHIPQVAIETRHLYKRFGDVTALDDINLRIAQGEFVAIMGASGSGKTTLMNILTCLDTATEGQVFLDGTDAAALDEEGRRRFRAEKIGLVFQQFHLIPFLTALENIMLAQHYHSVVDEAAARKVLEQVGLGHRVTHLPSQLSGGEQQRVCIARALVNEPPVIFADEPTGNLDEENEQRVLDLLTDLHRQGRTIVMVTHNPALGQFADRILRLQHGKYLGEEANQHALA
26268..26753                       PHAGE_Bacill_SP_15_NC_031245: nucleotidyltransferase; AVR67_25530; phage(gi100102)     7.19e-05            MRWHNVLLLAAAILISGCKEEKLAVGAPAPALAVFDLQGQESGLERWQGKAVYLNFWSAGCGGCLAEMDTLEALSKKWGDKVVVVAVNTDPETVRINDLLAKHQITYPVVRDQLNITQERYQVIGTPTSVLIDSEGRVLELHQGMRKPPELEATFARLAAR
26778..27263                       hypothetical protein; AVR67_25535                                                    N/A                 MAFIWNDESLAILRENAGILTTEQIAQLLHTNITAVRNMAYRLKLSLRVTAYNHRRIAQVQALYASETLSLKEIAAKTGLTASTVQYIVYVKSKNKPYATTEYVSFETENAVHYRVQKEFVDTERSLLDNISDNTRFRELYLTDGTFYCARNIKYEVFISE
27385..27939                       histidine acid phosphatase; AVR67_25540                                              N/A                 MKKLILAAAVAGAVLLSSAAQAQTTPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNQWSEWDVPGGQLTTKGGVLEIYMGHYMREWLAELGMVTSGECPTPDTVYTYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSQKAVQAMEKERSQMQLDEALLQS
complement(27973..28677)           PROPHAGE_Brucel_1330: transposase, putative; AVR67_25545; phage(gi23502708)          5.08e-53            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYISSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
28702..29010                       PHAGE_Entero_VT2phi_272_NC_028656: IS629 transposase orfA; AVR67_25550; phage(gi966197766)     1.50e-51            MISLSPPTICNSALESQGEYDSQWAAICSIAPKTGCTPETLRVWVRQYERDTGGGDGGLTSAERQRLKELERENRELRRSNNILRQASAYFAKAEFDRLWKK
29010..29468                       PHAGE_Entero_VT2phi_272_NC_028656: putative transposase; AVR67_25555; phage(gi966197765)     1.99e-100           MALLDKLREQYGVRPVCSELHIAPSTYYHCQQQRHHPDKRSAHAQRDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTVSRKTVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYSGVHH
29512..29898                       PHAGE_Entero_VT2phi_272_NC_028656: putative transposase; AVR67_25560; phage(gi966197765)     5.93e-84            METTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAKLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKKRAEVELATLTWVDWYNNRRLLGRLRHTPPAEAEKAYYASIGNDELAT
29864..30100                       hypothetical protein; AVR67_25565                                                    N/A                 MLPSEMMSWQPEFTDKTLSRKTGAVHWRSILLFCGTLFTWMQQFSISGVRSTRSWIQTLRNCHHYSAGILICKGAIHL
30185..30538                       PROPHAGE_Escher_EDL933: putative transposase; AVR67_25570; phage(gi15803516)         5.67e-62            MNLLTALLFHCSPNPFIAVRVLGLRQGGISEETQNDSCEKILAPTEWKLLWVKLEGKPLPSQTPTLKWACLKLAKLGRWYDSKRTGRPGWVVMWDGWFRLQDMVEGYLVMKSLDQEI
complement(30597..31907)           ABC transporter substrate-binding protein; AVR67_25575                               N/A                 MFKPLTALTVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKQFNDSQQDVEVRGIFTGNYDTTKIKAESAQKAGQPPALVIMSANFTTDLALKDEILPMDELFKYGDQKAGNFLQTEFWPAMHKNAQVMGTTYAIPFHNSTPLLYYNKTMFDRAGIQQPPQTWAELLADAKKLTDESTGQWGIMLPSTNDDFGGWIFSALVRANGGKYFNEDYPGEVYYNSPTTIGALRFWQDLIYKDKVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRAVPIGGASLVSFKGISEAQKKAAYRFLTYLVSPEVNGAWSRFTGYFSPRKASYDTPEMKAYLQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAVVNDAKVRPEAAVQAAQKEADALMKPYVDKTALSEVK
complement(31900..32973)           PHAGE_Bacill_G_NC_023719: gp245; AVR67_25580; phage(gi593777701)                     7.85e-35            MLSLQNISKRFDGKPALSALSLDIHEGEFVVLVGPSGCGKSTLLRLLAGLEPVSEGQIWLHDENITATTPRDRNFAMIFQNYALFPHLSVRDNITFGMKVRKEEKSSWQPRVDKVAQMLQLEALLDCKPAKLSGGQRQRVAMARAIVRNPRLFLMDEPLCNLDARLRSEVRDSIMALHQQLKTSTIYVTHDQTEAMSMADRIVVMNGGHVQQVGHPEYLYANPANLFVAGFIGSPAMNLLSLPCANGEVLLGEQRHPLPPRHRDQTRVWLGVRPEHITDHVEEDHLRLPATVLQRELMGADYLLHVSTPIGTLRFSRRNRGKVPEKDESLPIGFSPADVHLFHAETQHNLQMETDHV
42859..42870                       attR                                                                                 N/A                 GCTTATTATGCA
