gi|00000000|ref|CP013895.1|  Bordetella pertussis strain J152, complete genome. 4110587, gc%: 67.70%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
679289..679358                     attL                                                                                 N/A                 CTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCAACC
679387..680337                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AVS68_03385; phage(gi52430457)     1.28e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
complement(680589..680795)         hypothetical protein; AVS68_03390                                                    N/A                 BordetellapertussisMNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
complement(680867..681478)         PHAGE_Pseudo_F10_NC_007805: Repressor protein; AVS68_03395; phage(gi148912804)       1.15e-09            BordetellapertussisMRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
681881..681892                     attL                                                                                 N/A                 GCGCGCGAACGC
complement(681958..682278)         hypothetical protein; AVS68_03400                                                    N/A                 BordetellapertussisMSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQVHGPNYSVATVQTQAMLQNNLNSIAI
complement(682271..682969)         hypothetical protein; AVS68_03405                                                    N/A                 BordetellapertussisMSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIGDSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAALLPGYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGRESPAQDVKHE
complement(682984..683205)         hypothetical protein; AVS68_03410                                                    N/A                 BordetellapertussisMNWEVGDFQFLKSGSDEPCIQPIESSHLEARAEAMFEPLEAAMLGDADPYSDSSLAGLRNVRTMLSDLLSRSA
683223..684173                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AVS68_03415; phage(gi52430457)     1.28e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
684813..685298                     PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative terminase small subunit; AVS68_03420; phage(gi589286873)     3.39e-44            BordetellapertussisMPAASLPEGPRTMARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQIPGFLQALNGGKVMADAEVADRLYQRALGYTHVEDDIRVCDGVIITTPTTRHYPPDTTACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA
685285..686562                     PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; AVS68_03425; phage(gi100002)     0.0                 BordetellapertussisMPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
686565..687983                     PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713: portal protein; AVS68_03430; phage(gi428782116)     2.03e-64            BordetellapertussisMPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTARVRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
687955..689067                     PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; AVS68_03435; phage(gi985757697)     2.28e-127           BordetellapertussisMSSLQTELYDATVRHAIDLVRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKELLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQGQLFDSLGIEFTTRGVTAGQVYAGAMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYADGLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLRYEPDSHKPIGHKVPWGAGPGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFAQAGVE
689073..689315                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AVS68_03440; phage(gi985757698)     1.26e-22            BordetellapertussisMPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVIETRIGVFETARTWSGGTKVLLCVLCFMRGERVVLK
689438..690040                     hypothetical protein; AVS68_03445                                                    N/A                 BordetellapertussisMPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEKLTKDLAEKDDALTQHLIDSGLSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAPANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
690067..690474                     PHAGE_Pseudo_PS_1_NC_029066: major capsid; AVS68_03450; phage(gi985757701)           1.51e-57            BordetellapertussisMSISQMQVFNKYFMPAIIETLGQQIQKFNAASRGAIMLTTAGFEGDFLQESFYQAIHGARRRVDRYAANGSASPTDLTQLKHSSVKVAGGFGPIRYEPSQMTWLEKPTAEGIEVASRNFAEALLQDQLNTAIAALV
complement(690469..691419)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AVS68_03455; phage(gi52430457)     3.90e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
691518..692084                     PHAGE_Pseudo_PS_1_NC_029066: major capsid; AVS68_03460; phage(gi985757701)           4.95e-84            BordetellapertussisLVAAISNQATATVNVSAKTGLTYSVLNDAHAKFGDSSGLIVANVMSGQVYHKLIGQNLVNAQQLFEYGAVTVVDILGKTVVVTDAPALYATGTPNLQKVLGLVAGAATVSDGGDLITNIETSNGKERIETTFQADYTFGLGLKGYTWDEATGGKSPTDAELATGTNWDKVATDIKHTAGVIAIGDASK
692094..692345                     hypothetical protein; AVS68_03465                                                    N/A                 BordetellapertussisMTQKTKLPVWYLPGPFYRYEQDVKAEAAKAGVRIVDANATGSRDGAAKEVPKVTLKPEYRSKGKAEAPKEKESDPQPKDPAKT
692408..692890                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: virion protein; AVS68_03470; phage(gi658311471)     5.12e-18            BordetellapertussisMPLIVEDGTGLPNADSYVSVADCQAYAAAHGLAFAGEEAALEAALRNSALYLDGEYTYRGERATDTQALEWPRTVATGVPREVVNACCELAARALTGPLWQDVSSTTAGAAIEKTVGPITTKYASAAGARNDGQTRYAGVAAMLRRWLSSYGSSVKLVRC
692892..693092                     hypothetical protein; AVS68_03475                                                    N/A                 BordetellapertussisMENFLRLVVPDPSGEPGLQECCGVQLYTADGMPISGLVAMKLESSTDRPIWRATLVMDINVSGKAV
693092..693487                     PHAGE_Pseudo_PaMx74_NC_028809: putative virion structural protein; AVS68_03480; phage(gi971745311)     1.56e-08            BordetellapertussisMATFDYADMAATAQELLLEFGGPVSVRQFVTGEYDPDLGQAPTTTVDNAGIGALFDYSAQAAGLANMAGSVIETGDKQMYLAPALAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLYELQLRQA
693484..693882                     PHAGE_Salmon_SETP13_NC_022752: putative tail protein; AVS68_03485; phage(gi557307690)     2.21e-23            BordetellapertussisMSFTADLGKFAARAKGNIDTATRQATVLLAKGVILKSPFDTGRFRANWQFSAAGIQRATSMAVDPDGQVTLHRLVADIKQTRAGGVTYLSNSLPYAVPLENGWSKQAPQGMAKLTAQEFQRYVSQAAKDANK
693879..694301                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AVS68_03490; phage(gi985757706)     1.28e-28            BordetellapertussisMSQDLIRAAFEKRLKDWAKARTPELAVAWQNINFTPPSNAVYLRAYVLPAATISRDAAGDHRQYRSLFQVNVVMPIGAGSRAAEQIQAELDALFQVNLIMPSGGLAVRVRTPISSGQPTTGDADHTVPISLGYDVQFYPE
694309..694809                     PHAGE_Klebsi_vB_KpnM_KpV52_NC_041900: hypothetical protein; AVS68_03495; phage(gi100058)     2.25e-40            BordetellapertussisMNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYVYGAWPTQNIDHVNGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEGCSI
695064..695582                     PHAGE_Pseudo_PS_1_NC_029066: tail protein; AVS68_03500; phage(gi985757707)           2.05e-29            BordetellapertussisMKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNGRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSMMSDFTRYAPLAS
695592..695921                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AVS68_03505; phage(gi985757708)     1.03e-14            BordetellapertussisMSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSDASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQARRKN
695939..696229                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AVS68_03510; phage(gi985757709)     5.70e-17            BordetellapertussisMYRPMLDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFDGVRVMESAALRMMNKK
696255..698867                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; AVS68_03515; phage(gi169257310)     1.52e-64            BordetellapertussisMADEVASLVLRVDSTQAKGASADLDKLATSGAKAEQAAVKVGTAGKAAAAGLGAMGQAAKTAQAQAAAAAMTAGEMRLAMRSLPMQMTDIAVGLSTGQSPFYVLMQQGGQLKDLFGGIGPAIKAVGGYVAALITPFTAAAAGAAALAVAYQQGAEEGRRFTAAITLTGNAAGVTESQLAAMAKRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLTEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYERVKSLQEEGRQQDAARLALTTYAQAMEERSNQVVKNAGYMERAWNAVKGAAKGAWDAIADVGRPDAAQDVLNGLEREARQRRENIALAEQAGASVSKAERMSLAAAEACVALARDQMQTQSAIAKAQALDAQRSAVGIAARDELNKLIAQGASNEEKRAKALEENEERIRRIRAGGGTVTATEEAASIAAINKQYEKRSAAVAGSVAAGVRELEQAREREAVLRAELETTGKITSDRQKLVAFEQRIADLKAKDQLTADEKSILANETANRQQLERNAGLADQIELQKEVVKLKTLEASAQATLAADQDRYNDLLEGFTASPRVREQLQAQQQIYRDFQRQVRASEKEGLTPDALAARVQVLKLNLDQRLELLARHYENVGVLEGDWKKGAEGAFNDYAETVGNVASATRNAFADAFKGAEDALVQFVTTGKLSFAELADSVIADLMRITVRQSITGPLASVLGSVFSNAFGSALPATASWAMPELAGRRATGGPTLPRRLYEVAENGPELYDEGGRTYLLSGGDGGHVTPLSRNAYRPSMPVTVNVHGVDSQPQVRARPDARGGLSIDLIFRQVKDRLAHDIDAGVGSLPRALERRYGLNRQLA
698877..699236                     PHAGE_Pseudo_JBD44_NC_030929: membrane-associated initiation of head vertex; AVS68_03520; phage(gi100034)     4.84e-05            BordetellapertussisMTLPHWPAGLPLVEFSRQPISPFQRTEMENGRARHRRHTRVHPVHAHVSFVLDREQYDVYQRFCSIDLNGYAGWFLMAMNGPGGLKLRKVRWLLPVPREERIPGDLWRVSGELESMSDE
699304..699837                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AVS68_03525; phage(gi985757717)     7.68e-07            BordetellapertussisMSLEKALKEAYASAPQDRVVFDTLELRHPAFVDEHGERTAVRVVLGYEDIYARLEAEAPLDGGKEVLFQAGAFRLRLPGFEEGQVPSLLITIDGASEKIVDHVEAAVQSRYPIYATYRPYVSTDLSRPQMNPPITMELNKVTVTGASVSGTATLADVHNWAFPHQRYMRERFPGLFR
699834..700223                     PHAGE_Nitrin_1M3_16_NC_024217: putative tail structure protein; AVS68_03530; phage(gi643655230)     3.80e-06            BordetellapertussisMTSDDVNRYIGLAWQFGARGPGAYDCWGLLRECREHYFGGGIPDTVFGEQARALYAEKMRTGGWEIVMQPEHGDGVLLRAGNDPHVGIYLDLDGGGVLHAMEGRGVIFSPMRALVTMGFSQPTFYRIHA
700216..704172                     PHAGE_Pseudo_PS_1_NC_029066: tail protein; AVS68_03535; phage(gi985757719)           1.11e-50            BordetellapertussisMPDITIRRDPFRPHLRQETVVARQGTRLDTILRREGFIVGRAARLARTSPFIVQRNGRWLLQAAWHVRLKKNDVVVVVVLPAGGGGSNPLQVVAMVVLAAATAGVGAWATSAYAGAAGVGATSAAALTVGAGAATAVGPVGGMVVNSLFPPARLPGTLQREKASPTYTLSAQGNMARPMEAIPVRYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDVLLPKELFYAAHDGTLESAGTGVNVYARQIDDSGRPIGTTILLGKENIVAATLTPQYRTFRYKVEPARWEVSVERNSGHLAERATRMIRDVTWLGLRSYLPSKRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSKDLKPTRNPAWAIADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQVARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVARSFSVDYVFPAHDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRVQAWREGMALLARNRDQRRFASFQTELEGAIPGYADLVEISHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPAGPFRVEPGTHEREMRIVDLVDGQGLYVSTGEAEEPTHYTFGPGERRALLAQVMRAVPSEAGLWTLDVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTVFSGPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTWQGNVSASAAPPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDVAGQLGPWYPDGQGVLGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAIAANGAGATAVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSSPFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLWRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITWISDTLPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR
704177..704593                     hypothetical protein; AVS68_03540                                                    N/A                 BordetellapertussisMSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGVPATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
704812..705075                     PHAGE_Rhodob_RcapNL_NC_020489: tail fiber protein; AVS68_03545; phage(gi461474986)     2.15e-13            BordetellapertussisMMKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV
705075..705887                     hypothetical protein; AVS68_03550                                                    N/A                 BordetellapertussisMIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGSGRRAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLGLDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGLIKVRAGAALDKHGYALPHRMIVNDGATVLE
705892..706134                     hypothetical protein; AVS68_03555                                                    N/A                 BordetellapertussisMEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE
706113..706664                     PHAGE_Escher_Rtp_NC_007603: putative endolysin; AVS68_03560; phage(gi81343992)       5.61e-13            BordetellapertussisMRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAEVERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRGRKRFVQGLRNRRLEERALCLSGL
706664..707179                     PHAGE_Salmon_II_E1_NC_010495: tail protein; AVS68_03565; phage(gi170676285)          8.23e-09            BordetellapertussisMGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQELAAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAIDLLAYMLSRVSGRAEALAGVADRARIAGLTCERAYEAVRGNVRP
complement(707176..707457)         hypothetical protein; AVS68_03570                                                    N/A                 BordetellapertussisMPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAQPRKG
complement(707457..707678)         hypothetical protein; AVS68_03575                                                    N/A                 BordetellapertussisMSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
complement(708007..708678)         PHAGE_Pseudo_F116_NC_006552: hypothetical protein; AVS68_03580; phage(gi56692976)     5.48e-38            BordetellapertussisMCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIERHGWPWKLMIGVGRILVPADGWYEWRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
complement(708606..708974)         hypothetical protein; AVS68_03585                                                    N/A                 BordetellapertussisMLPGVVVLLVIDSWNDYRTLAAITNEAYDSALLEPARVLESSLEFAADGTLQVATPLYAQVMLESKGGTAKRRIYAICSALSVNLADSEYGPPGPAEVICAAASPRSQRLKTTSRSSGRMRG
709022..709033                     attR                                                                                 N/A                 GCGCGCGAACGC
complement(709034..709720)         two-component system response regulator; AVS68_03590                                 N/A                 BordetellapertussisMRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLTRSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTVSESSES
complement(709701..710273)         PHAGE_Bacill_PBS1_NC_043027: hinge connector of long tail fiber distal connector; AVS68_03595; phage(gi100265)     1.81e-06            BordetellapertussisMLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVPDHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHHETRYLRQRVHGPRSTDSPSSETDGHAHIAG
721264..721333                     attR                                                                                 N/A                 CTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCAACC

#### region 2 ####
2111153..2111164                   attL                                                                                 N/A                 CGCGCGGCGGGC
2119847..2119858                   attL                                                                                 N/A                 GCCAGGCGCGCC
complement(2121195..2122097)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AVS68_10130; phage(gi52430457)     1.55e-104           BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
2122247..2122258                   attR                                                                                 N/A                 GCCAGGCGCGCC
2122312..2123286                   hypothetical protein; AVS68_10135                                                    N/A                 BordetellapertussisMRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPGYVRNDGIPADALATLDWAIVLMNWAALLMTVPVVLYCAWPIWRGAAGGLRRGRAGMDAPVALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGASALATPLVRRLHQAGGELGAAADRLATRFVFVQVALALAAGEAWTQIDAAHAVPVMVALLVMSCPCAMSMAVPSAMACAHSALLARPEATTAQGDALLAAAARVARQNLYGSLAWHLLMTPLALAGWVAPWLAAITMLLSSLAVAGNAWRLRRHRWDAAPAAAVAQPAP
2123283..2123426                   cbb3-type cytochrome oxidase maturation protein; AVS68_10140                         N/A                 BordetellapertussisMSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDNDN
2125048..2125710                   peptidase S41; AVS68_10150                                                           N/A                 BordetellapertussisMAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHSTTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQVRTLQAEVQRYGPYSVAGESVFDHPFLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNVAQRMQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG
2125713..2125889                   cytochrome oxidase; AVS68_10155                                                      N/A                 BordetellapertussisMMGYLSALITVLSMGTFLGIVWWAWSSHRQSANRESALLPFALPDEDGPAQQDGAMQP
2125886..2126824                   cytochrome oxidase subunit III; AVS68_10160                                          N/A                 BordetellapertussisMSDFVNGFWSYFIGIIAIGGIVWCVWLLYSQRRWLSTRPAGGVVEDTGHVWDGDLTELNNPVPRWWTWMYLLTCVFALGYLVLFPGVGSYQGTLGYTSVGEVKQKQAELAERVKPVYERFGGMTPEQLVADAPAREIGQRLFLNTCAQCHGSDAKGSTSFPNLTDGDWLYGGTPEIIAETIAKGRHGVMPPWKGVIDPRMAGDIAHYVRSLSGLAVDPVRVFRGKREFANYCVACHGVDGKGNQALGAPNLTDDVWLYGSSEASIVRTILDGRDNRMPAHEEVLTPEQIKLLSAWVWGLSNQAPAKAAEAAR
2126916..2128406                   cytochrome c oxidase accessory protein CcoG; AVS68_10165                             N/A                 BordetellapertussisMTQGTPAAPGGPSDPQPPAWRPAPGPRRADGETLEQTLADVRSKIYPRSVSGIFARWRVVFVVLTQLIFYGLPWLQWNGRQAVLFDLGARKFYLFGLVLWPQDVVYLAVLLVISALALFLFTAVAGRLFCGYACPQTVYTEIFMWIERRVEGDRIARIRLDEAPWSARKLRIKATKHVLWLAVAWWTGSTFIGYFAPIRELGHQLFALQLGGWQWFWMLFYGFATWGNAGFMRESVCKYMCPYARFQSVMVDHDTFVVTYDKRRGEPRGGRSRKIDHKAAGLGDCVDCSLCVQVCPTGIDIRDGLQYMCIGCGACIDVCGQVMDKMRYAPGLIRYTSERAVDEGLDGRRARSHLLRPRVLIYGGLILALAIAFAVSLGMRNPLRVNVIRDRGALGREVAGGLVENVYRLQIINTSDQPLRLQLTAEGIDGLAVLAGRDGSDVVEVEAAANKLVPVVLRAPRGDTAPGAHAIVVQARSQDTGRVLEVREPASFYLPE
2128492..2128644                   hypothetical protein; AVS68_10170                                                    N/A                 BordetellapertussisMAGPLVAIIGCVITIYLAMTRYGDQPIAEGAVKRGLVVERVAAPAADARR
2128658..2128897                   hypothetical protein; AVS68_10175                                                    N/A                 BordetellapertussisMRWRSLMWILWPSFLAAGVGSALIFALIDPLDVAIFGQVPTSRTGFYTVSFFVLWLVTALSSTVTAYLMPPGGQDETPF
2128993..2129736                   permease; AVS68_10180                                                                N/A                 BordetellapertussisMDALHVVVVAGAVVAGFVQGLSGFGYGLTAMSVWAWSIDPRLAAALVVFGSLTGQLIAAFSVRRGFDWRRLLPFLLGGLVGIPIGVRILPMLDVHMFKALLGCFLVLWCPLMLAVKYLPRITAGGRLADAVVGGLGGVMGGIGGFTGTLPTLWCTLRGFARDEQRSIIQNFNLGTLLVTMATYVGTGIVTADMLPLFGLVALAMLIPTVLGTRLYLGISDQAFRRIVLGLLTLSGVAMLASSLPRLL
2129769..2130269                   GCN5 family acetyltransferase; AVS68_10185                                           N/A                 BordetellapertussisMLIRSETPADQRAIFDVTQAAFRGHPHSEQTEAYIVQALRAAGALTLSLVAELDARVVGHAAFSPVQISDGSPSWFGLGPVSVDPAHQGRGIGTALIEHGLARLQARGAAGCVLVGEPAYYGRFGFRPEPGLVLPDMPPTHFLALTFGAPARGTVTYHPGFAARDA
2130368..2131291                   PHAGE_Bacill_G_NC_023719: gp245; AVS68_10190; phage(gi593777701)                     3.10e-20            BordetellapertussisMQAVISVQGLSKTYASGHPALKNINLDIYRGEIFALLGPNGAGKTTLISIICGIVNPGSGRVLADGHDIVREFRAARDAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRAMIAKALSHEPRILFLDEPTAGVDVELRHGMWQMVRRLRENGVTIILTTHYIEEAQEMADRIGVIRKGEIILVEDKHALMSKLGKKQLVIMLDAPLAALPALAGDYQLELAAEGTQLVYTYDNQVSGGIAALLRELDARGIGFHDLQSSESSLEDIFVSLVSAQT
2131288..2132049                   sugar ABC transporter permease; AVS68_10195                                          N/A                 BordetellapertussisMNWYAIKAIYKFEMARAWRTLMQSVASPVISTSLYFVVFGAAIGSHMVEIDGVSYGAFIVPGMIMLSLLTQSVANASFGIYMPRFSGTIYEIHSAPISYVEIVLGYVGAAASKSILLGLIMLATARLFVPFHIDHPVWMLAFLVLTAVTFSLFGFIIGIWADGFEKLQIIPLMIITPLTFLGGTFYSIKMLPPFWQTVTLFNPVVYLVSGFRWAFYGSADVSLGVSLGMTLAFLLVCLLTVRWIFRTGYRLKT
complement(2132065..2133147)       hypothetical protein; AVS68_10200                                                    N/A                 BordetellapertussisMQTESNPLAERFIARNLLDLAIRITLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHLATAGRWLLAGMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGVRIAGPEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFLLMVPMVVYVFLNNTPTVAIVFAVWCLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQQSPAG
2133350..2134300                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AVS68_10205; phage(gi52430457)     3.47e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
2134399..2135349                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AVS68_10210; phage(gi52430457)     3.47e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(2135309..2135722)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; AVS68_10215; phage(gi157166006)     1.94e-29            BordetellapertussisMNMEIRPVRTEADYKSALKEISRLMESDPELGTPDGDRLDVLATLVQAYEARHYPIDLPDPVEAIKFRMEQGGLTPKGLEPMIGKRNRVYEVLNRKRGLTLPMIWRLHTELGIPAESLIRSPAPPRCELSIGCIRPG
2136007..2136306                   PHAGE_Burkho_Bcep176_NC_007497: gp17; AVS68_10220; phage(gi77864642)                 1.04e-09            BordetellapertussisMNRIGGVGIAWYRKEDYERVRAISNDAHTFPDTFEDWEKRAEERREEILKLGHVVIKAYIDPDTFPAWCRANRYKVDAKGRMAFASAEAHRVTSHVHKD
complement(2136628..2136706)       tRNA                                                                                 N/A                 GGGCCTCTAGCTCATGCCTGGTTAGAGCAGCGGACTCATAATCCGTTGGTGCCGAGTTCGACTCTCGGGGGGCCTACCA
complement(2136716..2138998)       PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; AVS68_10230; phage(gi331028036)     9.41e-39            BordetellapertussisMTKSTGKSPSAIDAATAQSTTAKRAASMAAEKAPAKTAVKVAKPAAKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAEDKLADLVGAARPAPSGRRPGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVSPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADEDEGDDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQTELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETNLQWVLDEVAAAHAYSETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
complement(2139684..2141714)       PHAGE_Helico_phiHP33_NC_016568: DNA primase; AVS68_10235; phage(gi371671350)         5.98e-52            BordetellapertussisMIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENHSPRQQAESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGKGEPKYLNSPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLALQGIANAVATLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIPECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADEAPPDWAFEPVHDFEPDAYSVGAVDGEPSMPAAGGWQERKGRQGGDWKGKKGDWKGKKGDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGDQQLEVIDHGPHLGLVRDLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRMEFDAARAEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAQ
complement(2141734..2141946)       PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; AVS68_10240; phage(gi460042545)     4.02e-05            BordetellapertussisMPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY
2148932..2148943                   attR                                                                                 N/A                 CGCGCGGCGGGC

#### region 3 ####
2576968..2577723                   PHAGE_Bacill_G_NC_023719: gp350; AVS68_12305; phage(gi593777806)                     4.12e-23            BordetellapertussisMARLDNADATSMTGRPPLIMNDQRKSSRASCRASANYLRAEAALPRRRYPQPPVSGAATLQELQAQVDTLELENARLRRLALTDDLTGAYNRRYFATMLRDALRERVRGGGLALCLFDIDNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAVLSAPSASAALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRAKQAGKNRLHLIASRTAGA
complement(2577739..2577900)       hypothetical protein; AVS68_12310                                                    N/A                 BordetellapertussisMENDPLAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIEPPVISQEG
2577994..2578509                   PHAGE_Myxoco_Mx8_NC_003085: hypothetical protein; AVS68_12315; phage(gi15320584)     5.52e-11            BordetellapertussisMTPGPRTSPLVFASASIQAIKAGKQRQTRRIVKPQPPPAATLWYCDPAHAERWIAATARPDDATPAQTVSKWLVCPYGKPGDLIDLAHESGQPFGRAILMGVRIQRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWCERYGARAWAANPWVWVLEFRLLNQNGH
2578610..2578622                   attL                                                                                 N/A                 CCCCAGCGGGACA
2578782..2579099                   virulence factor; AVS68_12320                                                        N/A                 BordetellapertussisMKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVAPAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPRYYKGHRHYDRGHRGHRGHGRGHWRD
complement(2579287..2579523)       hypothetical protein; AVS68_12325                                                    N/A                 BordetellapertussisMIGDFRVRCTVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVSYQDREDAERTSQQIFERINGVRFNGEPEFAHASA
complement(2579814..2581169)       PHAGE_Bacill_G_NC_023719: gp287; AVS68_12330; phage(gi593777743)                     3.24e-09            BordetellapertussisMLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQALPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGASSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPEHSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQNKPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP
complement(2581216..2582556)       PHAGE_Bacill_G_NC_023719: gp70; AVS68_12335; phage(gi593777538)                      1.24e-96            BordetellapertussisMSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAYAADEQYFPDGLNPTFYRPTDRGLEAKIQQKLAFLDELDAQERARKR
complement(2582658..2583290)       outer membrane lipoprotein carrier protein LolA; AVS68_12340                         N/A                 BordetellapertussisMHMIRRAAGALAVFAVAALAAAPAWAATAQEQLDTFVATVKGATGSFKQSTVSPQGATQPAQSGTFAFQRPGKFKWAVQLPYEQLIVSDGKQVFQYDPDLAQVTVRQVDQAIGTSPAAILFGAGQLSQAFAVSALPDRDGLQWLRAKPRNADAGFSQVDIGLRDNQPARIELVDAFGQTTRVELSNLLPGAVPASEFQFTPPQGVDVVKM
complement(2583290..2585659)       PHAGE_Mycoba_Baka_NC_042316: neck protein; AVS68_12345; phage(gi100207)              3.82e-97            BordetellapertussisMSRMPRISNATPRASRNTRNGPSPFQARISALLREARWILFAALAAWLTLVLATWSPADPGWSHSVSGDAIHNGGGTLGAYLADILLYLFGFSAWWWVVLLLHRVRAGYRRLASNLRVTSGKQPDALPRVHWEEGIGFVLLLTGSLGIEALRLYSWGMHLPGGTDGESGAGGVIGQMLAGWLSRGVGFTGGTLALLVLLAVGLSLFFSFSWLQIAERVGSWLEGLVRRVRDSYAAREDRKVGEVAKAVRTEQVVAKQEKLVHEQPVRIEPAITVVPRSDRAEKEKQQSLFAPPAGESDLPAIGLLDPPLQNQETVSAETIEFTSRLIEKKLADFGVSVVVVAAQAGPVITRYEIEPATGVKGSQIVNLAKDLARALSLVSIRVVETIPGKNLMGLELPNPRRQMVKLSEILGSQTYHASHSVLTMALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINAMILSLLYKADASHTRLILIDPKMLEMSVYEGIPHLLAPVVTDMRHAANALNWCVGEMEKRYRLMSKMGVRNLAGYNSKIRDAIKREEPIPNPFSLTPDAPEPLQALPHIVVVIDELADLMMVVGKKIEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQMGAETLLGQGDMLYMPPGTGLPVRVHGAFVHDDEVHRVVEALKAQGEPNYIDGLLEGSEGETGDGLSSVTGMGDAESDPMYDQACEVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQAGMVSPMQSNGNREILVPAREEA
2585692..2586651                   PHAGE_Bacill_G_NC_023719: gp344; AVS68_12350; phage(gi593777800)                     1.68e-69            BordetellapertussisMSTPKHAKVLILGSGPAGYTAAVYAARANLSPALITGLAQGGQLMTTTEVDNWPADVQGVQGPDLMQRFLQHAERFNTEILFDHIAKVDLSRRPFTLTGDTGNLYTCDALIIATGASAKYLGLASEQAFMGRGVSGCATCDGFFYRNKDVVVIGGGNTAVEEALYLSNICRKVTLIHRRDKFRAEPILVDKLMDKVANGNMELKLFHTLDEVLGDDSGVTGVRIRSTETDATEDLDVDGCFVAIGHQPNTGIFEGQLEMKDGYIITKSGLSGMATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRWLENAGQ
2586638..2587324                   DNA mismatch repair protein MutS; AVS68_12355                                        N/A                 BordetellapertussisMRGNKTGLADLKRLHEQVRETRARAEAAEREAAARASAAAPEADVAAFRRAVQAATPLKPSGRLANRRPDATPATAAAVASRRAAALGEAAPRADAGVSDASDIGALLTDGGTAYVRAGVAPDTARNLKRGQWRVGAELDLHGLRVEQARHAVLSFLDECLEHGIRCVRIVHGKGYGSQGLEPVLKDKARTWLVQKADVLAFSEAPERGGGAGALLVLLRQAEAGGRP
2587321..2587653                   PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; AVS68_12360; phage(gi311992758)     4.55e-10            BordetellapertussisMNSWIHLSMAIVAEIIATSALKSSEGFTRLLPSLVTVAGYAIAFYFLALTLRVIPVGVAYAIWSGVGIVLISLVGALLFKQHLDLPAIIGIALILAGVVVMNVFSKSVGH
2587726..2587738                   attL                                                                                 N/A                 TGGAAATCGCCGA
2587817..2588719                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AVS68_12365; phage(gi971753894)     2.20e-11            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
2588866..2589768                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AVS68_12370; phage(gi971753894)     2.41e-11            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
complement(2589765..2591831)       PHAGE_Aeromo_44RR2.8t_NC_005135: hypothetical protein; AVS68_12375; phage(gi37651715)     7.64e-08            BordetellapertussisMPFTGNTPQEFEQRLRRIYTLYTLGFILLVLLLALAELMGMARSWIGYVFLLVTVSLYACIGIVCRTSDQVEYYVAGRRVPAFYNGMATAADWMSVASFIGVAGTLYLTGYGGLAYIMGWTGGYVLVALLLAPYLRKFGQYTIPDYLGARYGGKLPRLAGVFCAILCSFTYLVAQIYGVGIITTRLTGISFELGIFVALGGMLVCSFLGGMRAVTWTQVGQYIILVIAYLVPVVWLSVKHTGMPVPQLSAGTVLQEITEKEVYLAHDPGERAVRQLWRSRADEMDERLRALPDSLAHEKDRLRGRLAQLNASDAPMVEIRSLERELASYPATVEEARTLWSQARAAFEARATPPVPHAEPFPAEDPRERENMRINFLALVLCLMLGTAGMPHILMRSYTTPSVGEARRSVCWSLLFILLLYFMAPALALLVKYEVYTQVVGTSFLSLPSWVHAWSAVDIHLLDVLDVNRDGIVQLGEISMGADVVVLAMPEIGGLPYVVSGLVAAGGLAAALSTADGLLLTLSNSLSHDTWYRVVSPRMSAGRRVMVSKILLLLVAFGAAWVAARKPADILFMVSAAFSFAASSFFPALVMGVFWRRANKWGATLGMFAGLAATFAYMAHTHPWLREWVFGVTRAEPVDLWWGIQPVAAGVFGAPMAFLTIIVVSLLTPRPDSATEALVDYLREPGGR
complement(2591831..2592103)       hypothetical protein; AVS68_12380                                                    N/A                 BordetellapertussisMPESRVKSEPSPAPYWRRNVRLIVLLLACWAGLTFVPAYFARQLAFDFIGWPFSFWMAAYGAPLAYLILIVIYALVMNRFDARSRTRRDD
2592887..2594671                   ATPase; AVS68_12385                                                                  N/A                 BordetellapertussisMNADFLGLLLLYLAILLCAAPLLGRHIRQAINGERTWLTAWGQPLERGLYRLAGVDPAAEMDWRRYAVAMLVFNVLGVLAVYALQRLQGWLPLNPAGLPGVAPDSALNTAISFVTNTNWQGYAGESTMSYLTQMLALTVQNFVSAATGIAVLIALVRGLARHSAATLGNFWADLVRATLYVLLPLSFILALALVSQGVVQNLDPYVEAQTVQAQQYETARLDAQGQPMTGPAGQPLTDTVVTRVQTLPMGPVASQEAIKLLGTNGGGFFNANSAHPYENPNAWSNLLEMLAILLIPAALCWTFGEMVGSRRQGVAILAAMTVLFAGFAASAAYFEQQPTPALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSFSALGGVTPLLQMQLGEVIYGGVGSGLYGMLAFAILAVFIAGLMIGRTPEYLGKKIEALDMQMVALVILATPALVLAGTAVAVLADAGRAGVLNPGAHGFSEILYAMSSAANNNGSAFAGLSANTPFYNVLLGLAMWFGRYTIIVAILALAGSLAAKPRLPASVGGMPTTGPLFVALLVGAVLLVGALTYVPALALGPVAEHLQP
2594695..2596860                   potassium-transporting ATPase subunit B; AVS68_12390                                 N/A                 BordetellapertussisMANSPTPLSAQAGLPAASPSLPAATPHRAFGLWSRALAGPALRDTLRKLSPAAQLRNPVMFVVYAGSILTTLLWLLALAGLAEAPAGFILAVAAGLWFTVLFANFAEALAEGRGRQQAAALRGLRTTIEARVLTGFRDSDAAAALPPYWRSRATSRPSGALRRDDVVLIEAGETVPGDGQVIAGIASVDKSAITGESAPVIRAAGSDFCSVTGGTRVLSDWIFVRIAADPGDSFLDRMIAMVESARRQKTPNELALTILLVGLTLVFLLVVASLLPFSMYAVSASGAGQAVSITVLVALLVCLIPTTIGGLLSAIGVAGMSRMMRANVIATSGRAIEAAGDVSVLLLDKTGTITFGNRQAAAFVPAPGVSPAVLAEAARLASLADETPEGRSIVALAERILDTRSEAPAGARFVPFSAQSRMSGVDLDGRLIRKGAADALARWLGEGQGGLPAAVARDVDDVARRGSTPLVVAEGGQALGVIELKDIVKPGIQPRFAALRRMGIKTVMITGDNALTAAAIAAEAGVDDFLAEATPQAKLELIRACQADGHLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGALTTFSVANDVAKYFAIIPAAFMAVYPQLAQLNVMGLATPASAILSAVIFNALIIVALIPLALKGVRYRPLGAAVLLRRNLLVYGLGGLLAPFAGIKLIDMALAALGWT
2596871..2597470                   potassium-transporting ATPase subunit C; AVS68_12395                                 N/A                 BordetellapertussisMTMHPPLPPAGRPLRAALVIFLALSVLVGLLYPLATTGVARLLWPFQAGGSLLEQDGRVVGSALIGQSFTDPRYFWGRPSATAPMPYNAAASGGSNLGPANPALAQAVRARIAALRAADPGNPAPIPVDLATASGSGLDPHISPAAAGYQAARVARARGLPTATVEQLIARHTERPVPDILGEPVVNVLALNLALDRLR
2597536..2600250                   histidine kinase; AVS68_12400                                                        N/A                 BordetellapertussisMADPGNDRLDPDRLLQTLEQAQSDARRGRLRIYFGACAGVGKTYAMLAAARAQAAQGVDVVAGLVETHGRADTAALLDTLPALPLQTLDFQGRRLREFDLQATVARRPRLLLLDELAHTNAPGARHAKRWQDVEELLAAGIDVWTTLNVQHLESLNEAVGGITGVRVRETVPDSVFDAADEIILVDLSADELLRRLREGRVYVPEQARHASRHFFRKGNLIALRELALRRTAEHVDDDVRAYRHERAIEPVWRTREAVVACIDADPHAEHVLRSAHRLAQQLDCEWHAITIEAPRVAPLPRAGRARLDQALALAETLGAHVETVAGTDMVDAATRYMRRHNITKAVVGRDAWRRRGLSGLLDAALTPGRLLRRRSFADVLASACPEADIVRVGAPSAATAAPRRDPRSWRNASAPAGHAAAGAYLWALAYCAAATLASRLAFPVLHQTNIVMIFLLAVVAAALRHGRGPAALASVVSVALFDFFFVQPLASFAVSDVQYLLTFAVLLTVGLLIGQLTAGLRQQARAAARREADARGLYEFARELSAALQPEQIAGAASAFLNAAFGARGALYILGLDDRLRLAPGAGDAALEPTLAQWAFDHGQACGAGTDTLSNSPVLYLPLRAPMRVRGVLALHHAGPPLYSAAPARRQLDAYATLIAIAIERLHYVEVAQQALLSIESERLRNALLAAVSHDLRTPLTSLLGMAETLQRSPAAMTPAALETVAAMQDQARRMHALVVNLLDMARLQSHDAPLRRQWQSVEELVGSALAAMNAALQDRPVTVAPLSALPLVKCDGILIERVLCNLLENAAKYTPPGSAIHIDALADAHTLQVRVADDGAGVAQADRQRIFEKFARGQRESAPPPAQASGWRYAAPSWTPTRAASGSSRPGACAAPASSSRCR
2600292..2600987                   two-component system response regulator; AVS68_12405                                 N/A                 BordetellapertussisMPDYRPTVLIVEDDAHIRRFVRSALEAEGCEVHETDTVRRGLIEAGTRQPDAVVLDLGLPDEDGMALLRELRGWTELPVLVLSARSSEGDKIAALDAGADDYLTKPFGVGELLARLRVLLRRHARGGAGNAAQAGFGDVQIDLARRVVTRAGEHVHLTQIEYRLLAALVASRGKVMTHRELLREVWGPSHVESHHYLRIYMGHLRQKLEADPARPRYLLTEIGVGYRYAGE
complement(2600996..2601946)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AVS68_12410; phage(gi971753894)     3.32e-11            BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(2602045..2603286)       hypothetical protein; AVS68_12415                                                    N/A                 BordetellapertussisMPVVQLKIFAVLALLIPALALVSKGGGVAVFYTLAVLTSLAIMVYAGRGRAQPSWRDLAWPGAVLAVPLLSMLVTNAYLGIWSGSEFEKLLRFALALPLFWVLLCVPRPWLQQIQWSLLFSAYAGAIMLYVIVGWYGGRMQVSFYGAEYNAVAFANLTLFFGFASLLTLGWRLTPWPGLEALLKVGAACAAVYAAHVSETRSSWMLLPVFGLVFLMSRRVWSLRRKLAVGLVLVAALAVLAGVMLSSQGNRMHKILTDLQRYTVQNDRNTSVGIRLQLWHASWMIFQEAPVLGVGPRNFRAELAKLRDQGVVTPEVASGYGEPHNDFMAAMAGYGLLGLLSILLLYLAPAWVFLRRMASDDRVIRTGAQIGLLFCLGYCAFSLTEMMFRNMRSVPIYSATLVLLLALTAPRAA
complement(2603436..2604416)       hypothetical protein; AVS68_12420                                                    N/A                 BordetellapertussisMAKPASDMPPYDKAAALRGLAGARRVALLMAPRLGDTLLMMNMARNLAAHGREVSIFGDYIHGLRDWFPGLDIRPSLSEEQAGQVLPGYDCAAQMHVGWPYALHAHQPNYFYYDAHVAITGRGFVKLFQIRDFCREQLGLAQAGADNGLRPPPQVQPHRSHPRRVALHPTSTGAQRCWAPRHFKELGLRLLHEGYEPNYIVAPHERAEWSWVLDHGLHLPQFPSLSEVAGFIHASGWFIGNESGIGHLASNVGVPTLSLTGRPTRTRAWRPAWSTSRIVYPALIPGGRWRDRLWREWLSPRRVMSAFHKLQADDRRQPVGVPWGKI
complement(2604615..2605871)       isocitrate dehydrogenase; AVS68_12425                                                N/A                 BordetellapertussisMSYQHIKVPTGGQKITVNADYSLNVPDQVIIPVIEGDGTGADITPVMIKVVDAAVQKAYAGKRKIHWMEVYAGEKATKVYGPDVWLPEETLDAVKDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSEDIYAGIEYMAESEQAKDLIQYLQTKLGVTKIRFPNTSSIGIKPVSREGTERLVRKALQYAIDNDRASVTLVHKGNIMKFTEGGFRDWGYALAQNEFGAQPIDGGPWCKFKNPKTGREIIVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADLIIASMEKSILSKKVTYDFARLLEGATQVSCSGFGQVMIDNM
2606074..2606499                   hypothetical protein; AVS68_12430                                                    N/A                 BordetellapertussisMFNPSRDQVREFFIETWRKHRATEVLTPLESMALDWILEHPEYHGDLESPEAMTAEYPVEHGRTNPFLHLSMHLAIAEQLSIDHPRGIRAAYQRLVGRGDAHQAAHEIMECLGQVVWEAQRLGTPLDSDAYIELIRQRAER
complement(2606541..2606903)       cytochrome; AVS68_12435                                                              N/A                 BordetellapertussisMKRFTFALAGIVLATAGVSAQAQDVVAGKAVFDKFNCASCHGADAKTSVQPEYPVLAGQHADYLAHALKAYKRGAAGSAATANVRKNPIMGAFAAQLSDQDIRNVAAWLAAQPSDLGVRQ
complement(2606916..2607269)       cytochrome C; AVS68_12440                                                            N/A                 BordetellapertussisMKLRISMTRTVSVLAVLASCAIAGPAAAADAAPVGNAQNARDKVSMCIGCHGIPGYKASFPELYHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLAAYYSSLK
2607393..2607405                   attR                                                                                 N/A                 TGGAAATCGCCGA
2607436..2608386                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AVS68_12445; phage(gi971753894)     3.32e-11            BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
2614744..2614756                   attR                                                                                 N/A                 CCCCAGCGGGACA

#### region 4 ####
complement(3752579..3752785)       integrase; AVS68_17810                                                               N/A                 BordetellapertussisMSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAEQRAAIVETIARGEFDPLVAPRRQ
3753790..3754449                   haloacid dehalogenase; AVS68_17820                                                   N/A                 BordetellapertussisMSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEYLRLAYGCGRYVPYEQLVREAARATGLPESAPAALEAGWHELPVWDDARALLRALRPHCKLAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAAAFVAGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR
3754477..3755622                   alanine racemase; AVS68_17825                                                        N/A                 BordetellapertussisMTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAAGITDILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW
3755763..3756098                   hypothetical protein; AVS68_17830                                                    N/A                 BordetellapertussisMSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAPTKDQTQA
complement(3756173..3757033)       PHAGE_Yersin_fHe_Yen9_04_NC_042116: hypothetical protein; AVS68_17835; phage(gi100012)     7.05e-86            BordetellapertussisMIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLVRVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAELYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAPVQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADARRQQFTAEADGIRLRGEAEAASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALPFIGIK
3757080..3757091                   attL                                                                                 N/A                 CGGCGGCGATGC
complement(3757297..3757998)       glutathione S-transferase; AVS68_17840                                               N/A                 BordetellapertussisMAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMRRRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA
3758168..3758563                   enamine deaminase RidA; AVS68_17845                                                  N/A                 BordetellapertussisMPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDGTKLADAPFEAQARQVLENVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGAARPARAVVPTGPLHYGFKVEVEAVALA
3758721..3759623                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AVS68_17850; phage(gi971753894)     2.20e-11            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3759631..3759644                   attL                                                                                 N/A                 ACAATGAAGCCTCT
3759634..3760275                   hypothetical protein; AVS68_17855                                                    N/A                 BordetellapertussisMKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEEVLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVYVVLAAAMGTDTWTVRTKEIPGGVRVSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQWMTCEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG
3760442..3760684                   hypothetical protein; AVS68_17860                                                    N/A                 BordetellapertussisMEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPELLQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA
3760831..3761733                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AVS68_17865; phage(gi971753894)     5.87e-12            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3761769..3762236                   PHAGE_Burkho_Bcep176_NC_007497: gp36; AVS68_17870; phage(gi77864661)                 3.67e-55            BordetellapertussisMSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSERESYIKFSHAEPVALTAILASNGLDDALWALRCVPGVDRDARLFAVWCARQVEHLMTDQRSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT
3762470..3762847                   hypothetical protein; AVS68_17880                                                    N/A                 BordetellapertussisMLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
3762844..3763026                   hypothetical protein; AVS68_17885                                                    N/A                 BordetellapertussisMSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
3763030..3764016                   PHAGE_Entero_phi80_NC_021190: phage recombinase-annealing protein RecT; AVS68_17890; phage(gi824479614)     3.70e-76            BordetellapertussisMNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDPAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGRDDQGGIQE
3764013..3764660                   PHAGE_Paraco_Shpa_NC_041868: RegA; AVS68_17895; phage(gi100039)                      3.68e-39            BordetellapertussisMNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFADFVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA
3764718..3765245                   hypothetical protein; AVS68_17900                                                    N/A                 BordetellapertussisMFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEFHPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLIDRVRLKHDLKGAKVLIGFGLGGSSDIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAIEKQGALGLNLEPEAA
3765282..3766466                   PHAGE_Serrat_BF_NC_041917: hypothetical protein; AVS68_17905; phage(gi100465)        4.14e-10            BordetellapertussisMENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVADERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALDAAITALRWSAGALQALNIEADKITLDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVMTERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPLDTSPGHSAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYENRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDADIPASLAQLVAAVKGMTKLYPHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN
3766477..3766818                   PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AVS68_17910; phage(gi985757664)     5.95e-13            BordetellapertussisMELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLTDDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGCAAHKYGGIEAATRRAIVRAAAEIGAKMQEAAHA
3766811..3766930                   hypothetical protein; AVS68_17915                                                    N/A                 BordetellapertussisMPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE
3766931..3767131                   hypothetical protein; AVS68_17920                                                    N/A                 BordetellapertussisMEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
complement(3767128..3768117)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: integrase; AVS68_17925; phage(gi971753914)     6.54e-59            BordetellapertussisMGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVRIARFLKEEADLCAKLIHTISTADLGAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRERIYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRAVALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD
3773200..3773213                   attR                                                                                 N/A                 ACAATGAAGCCTCT
3777196..3777207                   attR                                                                                 N/A                 CGGCGGCGATGC
