gi|00000000|ref|CP014212.1|  Bordetella pertussis strain J358 chromosome, complete genome. 4110595, gc%: 67.70%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
678244..678313                     attL                                                                                 N/A                 CTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCAACC
678342..679292                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AV745_03385; phage(gi52430457)     1.10e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
complement(679544..679750)         hypothetical protein; AV745_03390                                                    N/A                 BordetellapertussisMNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
complement(679822..680433)         PHAGE_Pseudo_F10_NC_007805: Repressor protein; AV745_03395; phage(gi148912804)       9.90e-10            BordetellapertussisMRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
680836..680847                     attL                                                                                 N/A                 GCGCGCGAACGC
complement(680913..681233)         hypothetical protein; AV745_03400                                                    N/A                 BordetellapertussisMSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQVHGPNYSVATVQTQAMLQNNLNSIAI
complement(681226..681924)         hypothetical protein; AV745_03405                                                    N/A                 BordetellapertussisMSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIGDSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAALLPGYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGRESPAQDVKHE
complement(681939..682160)         hypothetical protein; AV745_03410                                                    N/A                 BordetellapertussisMNWEVGDFQFLKSGSDEPCIQPIESSHLEARAEAMFEPLEAAMLGDADPYSDSSLAGLRNVRTMLSDLLSRSA
682178..683128                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AV745_03415; phage(gi52430457)     1.10e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
683768..684253                     PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative terminase small subunit; AV745_03420; phage(gi589286873)     2.92e-44            BordetellapertussisMPAASLPEGPRTMARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQIPGFLQALNGGKVMADAEVADRLYQRALGYTHVEDDIRVCDGVIITTPTTRHYPPDTTACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA
684240..685517                     PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; AV745_03425; phage(gi100002)     0.0                 BordetellapertussisMPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
685520..686938                     PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713: portal protein; AV745_03430; phage(gi428782116)     1.75e-64            BordetellapertussisMPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTARVRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
686910..688022                     PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; AV745_03435; phage(gi985757697)     1.96e-127           BordetellapertussisMSSLQTELYDATVRHAIDLVRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKELLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQGQLFDSLGIEFTTRGVTAGQVYAGAMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYADGLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLRYEPDSHKPIGHKVPWGAGPGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFAQAGVE
688028..688270                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AV745_03440; phage(gi985757698)     1.09e-22            BordetellapertussisMPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVIETRIGVFETARTWSGGTKVLLCVLCFMRGERVVLK
688393..688995                     hypothetical protein; AV745_03445                                                    N/A                 BordetellapertussisMPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEKLTKDLAEKDDALTQHLIDSGLSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAPANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
689022..689429                     PHAGE_Pseudo_PS_1_NC_029066: major capsid; AV745_03450; phage(gi985757701)           1.30e-57            BordetellapertussisMSISQMQVFNKYFMPAIIETLGQQIQKFNAASRGAIMLTTAGFEGDFLQESFYQAIHGARRRVDRYAANGSASPTDLTQLKHSSVKVAGGFGPIRYEPSQMTWLEKPTAEGIEVASRNFAEALLQDQLNTAIAALV
complement(689424..690374)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AV745_03455; phage(gi52430457)     3.36e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
690473..691039                     PHAGE_Pseudo_PS_1_NC_029066: major capsid; AV745_03460; phage(gi985757701)           4.26e-84            BordetellapertussisLVAAISNQATATVNVSAKTGLTYSVLNDAHAKFGDSSGLIVANVMSGQVYHKLIGQNLVNAQQLFEYGAVTVVDILGKTVVVTDAPALYATGTPNLQKVLGLVAGAATVSDGGDLITNIETSNGKERIETTFQADYTFGLGLKGYTWDEATGGKSPTDAELATGTNWDKVATDIKHTAGVIAIGDASK
691049..691300                     hypothetical protein; AV745_03465                                                    N/A                 BordetellapertussisMTQKTKLPVWYLPGPFYRYEQDVKAEAAKAGVRIVDANATGSRDGAAKEVPKVTLKPEYRSKGKAEAPKEKESDPQPKDPAKT
691363..691845                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: virion protein; AV745_03470; phage(gi658311471)     4.41e-18            BordetellapertussisMPLIVEDGTGLPNADSYVSVADCQAYAAAHGLAFAGEEAALEAALRNSALYLDGEYTYRGERATDTQALEWPRTVATGVPREVVNACCELAARALTGPLWQDVSSTTAGAAIEKTVGPITTKYASAAGARNDGQTRYAGVAAMLRRWLSSYGSSVKLVRC
691847..692047                     hypothetical protein; AV745_03475                                                    N/A                 BordetellapertussisMENFLRLVVPDPSGEPGLQECCGVQLYTADGMPISGLVAMKLESSTDRPIWRATLVMDINVSGKAV
692047..692442                     PHAGE_Pseudo_PaMx74_NC_028809: putative virion structural protein; AV745_03480; phage(gi971745311)     1.34e-08            BordetellapertussisMATFDYADMAATAQELLLEFGGPVSVRQFVTGEYDPDLGQAPTTTVDNAGIGALFDYSAQAAGLANMAGSVIETGDKQMYLAPALAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLYELQLRQA
692439..692837                     PHAGE_Salmon_SETP13_NC_022752: putative tail protein; AV745_03485; phage(gi557307690)     1.90e-23            BordetellapertussisMSFTADLGKFAARAKGNIDTATRQATVLLAKGVILKSPFDTGRFRANWQFSAAGIQRATSMAVDPDGQVTLHRLVADIKQTRAGGVTYLSNSLPYAVPLENGWSKQAPQGMAKLTAQEFQRYVSQAAKDANK
692834..693256                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AV745_03490; phage(gi985757706)     1.10e-28            BordetellapertussisMSQDLIRAAFEKRLKDWAKARTPELAVAWQNINFTPPSNAVYLRAYVLPAATISRDAAGDHRQYRSLFQVNVVMPIGAGSRAAEQIQAELDALFQVNLIMPSGGLAVRVRTPISSGQPTTGDADHTVPISLGYDVQFYPE
693264..693764                     PHAGE_Salmon_64795_sal3_NC_031918: hypothetical protein; AV745_03495; phage(gi100063)     4.06e-35            BordetellapertussisMNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYVYGAWPTQNIDHVNGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEGCSI
694019..694537                     PHAGE_Pseudo_PS_1_NC_029066: tail protein; AV745_03500; phage(gi985757707)           1.77e-29            BordetellapertussisMKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNGRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSMMSDFTRYAPLAS
694547..694876                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AV745_03505; phage(gi985757708)     8.85e-15            BordetellapertussisMSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSDASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQARRKN
694894..695184                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AV745_03510; phage(gi985757709)     4.91e-17            BordetellapertussisMYRPMLDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFDGVRVMESAALRMMNKK
695210..697822                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; AV745_03515; phage(gi169257310)     1.31e-64            BordetellapertussisMADEVASLVLRVDSTQAKGASADLDKLATSGAKAEQAAVKVGTAGKAAAAGLGAMGQAAKTAQAQAAAAAMTAGEMRLAMRSLPMQMTDIAVGLSTGQSPFYVLMQQGGQLKDLFGGIGPAIKAVGGYVAALITPFTAAAAGAAALAVAYQQGAEEGRRFTAAITLTGNAAGVTESQLAAMAKRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLTEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYERVKSLQEEGRQQDAARLALTTYAQAMEERSNQVVKNAGYMERAWNAVKGAAKGAWDAIADVGRPDAAQDVLNGLEREARQRRENIALAEQAGASVSKAERMSLAAAEACVALARDQMQTQSAIAKAQALDAQRSAVGIAARDELNKLIAQGASNEEKRAKALEENEERIRRIRAGGGTVTATEEAASIAAINKQYEKRSAAVAGSVAAGVRELEQAREREAVLRAELETTGKITSDRQKLVAFEQRIADLKAKDQLTADEKSILANETANRQQLERNAGLADQIELQKEVVKLKTLEASAQATLAADQDRYNDLLEGFTASPRVREQLQAQQQIYRDFQRQVRASEKEGLTPDALAARVQVLKLNLDQRLELLARHYENVGVLEGDWKKGAEGAFNDYAETVGNVASATRNAFADAFKGAEDALVQFVTTGKLSFAELADSVIADLMRITVRQSITGPLASVLGSVFSNAFGSALPATASWAMPELAGRRATGGPTLPRRLYEVAENGPELYDEGGRTYLLSGGDGGHVTPLSRNAYRPSMPVTVNVHGVDSQPQVRARPDARGGLSIDLIFRQVKDRLAHDIDAGVGSLPRALERRYGLNRQLA
697832..698191                     PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; AV745_03520; phage(gi374531665)     1.10e-06            BordetellapertussisMTLPHWPAGLPLVEFSRQPISPFQRTEMENGRARHRRHTRVHPVHAHVSFVLDREQYDVYQRFCSIDLNGYAGWFLMAMNGPGGLKLRKVRWLLPVPREERIPGDLWRVSGELESMSDE
698259..698792                     PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AV745_03525; phage(gi985757717)     6.61e-07            BordetellapertussisMSLEKALKEAYASAPQDRVVFDTLELRHPAFVDEHGERTAVRVVLGYEDIYARLEAEAPLDGGKEVLFQAGAFRLRLPGFEEGQVPSLLITIDGASEKIVDHVEAAVQSRYPIYATYRPYVSTDLSRPQMNPPITMELNKVTVTGASVSGTATLADVHNWAFPHQRYMRERFPGLFR
698789..699178                     PHAGE_Nitrin_1M3_16_NC_024217: putative tail structure protein; AV745_03530; phage(gi643655230)     3.27e-06            BordetellapertussisMTSDDVNRYIGLAWQFGARGPGAYDCWGLLRECREHYFGGGIPDTVFGEQARALYAEKMRTGGWEIVMQPEHGDGVLLRAGNDPHVGIYLDLDGGGVLHAMEGRGVIFSPMRALVTMGFSQPTFYRIHA
699171..703127                     PHAGE_Pseudo_PS_1_NC_029066: tail protein; AV745_03535; phage(gi985757719)           9.57e-51            BordetellapertussisMPDITIRRDPFRPHLRQETVVARQGTRLDTILRREGFIVGRAARLARTSPFIVQRNGRWLLQAAWHVRLKKNDVVVVVVLPAGGGGSNPLQVVAMVVLAAATAGVGAWATSAYAGAAGVGATSAAALTVGAGAATAVGPVGGMVVNSLFPPARLPGTLQREKASPTYTLSAQGNMARPMEAIPVRYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDVLLPKELFYAAHDGTLESAGTGVNVYARQIDDSGRPIGTTILLGKENIVAATLTPQYRTFRYKVEPARWEVSVERNSGHLAERATRMIRDVTWLGLRSYLPSKRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSKDLKPTRNPAWAIADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQVARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVARSFSVDYVFPAHDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRVQAWREGMALLARNRDQRRFASFQTELEGAIPGYADLVEISHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPAGPFRVEPGTHEREMRIVDLVDGQGLYVSTGEAEEPTHYTFGPGERRALLAQVMRAVPSEAGLWTLDVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTVFSGPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTWQGNVSASAAPPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDVAGQLGPWYPDGQGVLGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAIAANGAGATAVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSSPFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLWRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITWISDTLPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR
703132..703548                     hypothetical protein; AV745_03540                                                    N/A                 BordetellapertussisMSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGVPATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
703767..704030                     PHAGE_Rhodob_RcapNL_NC_020489: tail fiber protein; AV745_03545; phage(gi461474986)     1.85e-13            BordetellapertussisMMKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV
704030..704842                     hypothetical protein; AV745_03550                                                    N/A                 BordetellapertussisMIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGSGRRAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLGLDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGLIKVRAGAALDKHGYALPHRMIVNDGATVLE
704847..705089                     hypothetical protein; AV745_03555                                                    N/A                 BordetellapertussisMEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE
705068..705619                     PHAGE_Escher_Rtp_NC_007603: putative endolysin; AV745_03560; phage(gi81343992)       4.83e-13            BordetellapertussisMRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAEVERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRGRKRFVQGLRNRRLEERALCLSGL
705619..706134                     PHAGE_Salmon_II_E1_NC_010495: tail protein; AV745_03565; phage(gi170676285)          7.09e-09            BordetellapertussisMGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQELAAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAIDLLAYMLSRVSGRAEALAGVADRARIAGLTCERAYEAVRGNVRP
complement(706131..706412)         hypothetical protein; AV745_03570                                                    N/A                 BordetellapertussisMPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAQPRKG
complement(706412..706633)         hypothetical protein; AV745_03575                                                    N/A                 BordetellapertussisMSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
complement(706962..707633)         PHAGE_Pseudo_F116_NC_006552: hypothetical protein; AV745_03580; phage(gi56692976)     4.72e-38            BordetellapertussisMCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIERHGWPWKLMIGVGRILVPADGWYEWRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
complement(707561..707929)         hypothetical protein; AV745_03585                                                    N/A                 BordetellapertussisMLPGVVVLLVIDSWNDYRTLAAITNEAYDSALLEPARVLESSLEFAADGTLQVATPLYAQVMLESKGGTAKRRIYAICSALSVNLADSEYGPPGPAEVICAAASPRSQRLKTTSRSSGRMRG
707977..707988                     attR                                                                                 N/A                 GCGCGCGAACGC
complement(707989..708675)         two-component system response regulator; AV745_03590                                 N/A                 BordetellapertussisMRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLTRSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTVSESSES
complement(708656..709228)         PHAGE_Bacill_AR9_NC_031039: hypothetical protein; AV745_03595; phage(gi100073)       1.56e-06            BordetellapertussisMLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVPDHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHHETRYLRQRVHGPRSTDSPSSETDGHAHIAG
720219..720288                     attR                                                                                 N/A                 CTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCAACC

#### region 2 ####
2111154..2111165                   attL                                                                                 N/A                 CGCGCGGCGGGC
2119848..2119859                   attL                                                                                 N/A                 GCCAGGCGCGCC
complement(2121196..2122098)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AV745_10150; phage(gi52430457)     1.33e-104           BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
2122248..2122259                   attR                                                                                 N/A                 GCCAGGCGCGCC
2122313..2123287                   hypothetical protein; AV745_10155                                                    N/A                 BordetellapertussisMRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPGYVRNDGIPADALATLDWAIVLMNWAALLMTVPVVLYCAWPIWRGAAGGLRRGRAGMDAPVALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGASALATPLVRRLHQAGGELGAAADRLATRFVFVQVALALAAGEAWTQIDAAHAVPVMVALLVMSCPCAMSMAVPSAMACAHSALLARPEATTAQGDALLAAAARVARQNLYGSLAWHLLMTPLALAGWVAPWLAAITMLLSSLAVAGNAWRLRRHRWDAAPAAAVAQPAP
2123284..2123427                   cbb3-type cytochrome oxidase maturation protein; AV745_10160                         N/A                 BordetellapertussisMSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDNDN
2123552..2125038                   cytochrome C oxidase Cbb3; AV745_10165                                               N/A                 BordetellapertussisMNDCSAIASKAETFNYKVVRQFAIMTVVWGIVGMAVGVLIAAQLIWPQLNFETAWLTYGRLRPLHTNAVIFAFGGSALFATSYYVVQRTCQARLFCDKLAAFTFWGWQVVIVAAAITLPMGFTSSKEYAELEWPIDILITLVWVAYAVVFFGTIVKRRSKHIYVANWFFGSYILTIAILHIFNNIEMPVTLWKSYSAYAGVQDAMVQWWYGHNAVGFFLTPASSACITSCPSRPAVRFIRTVCPSCTSGRWRSPTCGPAPITCCIPRCPTGPSRWARSRSCWRLRGAASTASRCREPGTSCAPIRSSSWPRCRSTACPPSRDRCRSARSTRCRTTPTGPSATCTPARCAGWRSPSARCTTSRACTAASRCIACAPWSCISGSPPSAWCCTSPRCGSPACSRACGATPPPTARWSTASSRNSRRACRTTFAWPAASCTAACSSWPGTSGPCAARAPSTRRFRWKTITARRRPRACRRPSRQSGA
2125049..2125711                   peptidase S41; AV745_10170                                                           N/A                 BordetellapertussisMAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHSTTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQVRTLQAEVQRYGPYSVAGESVFDHPFLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNVAQRMQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG
2125714..2125890                   cytochrome oxidase; AV745_10175                                                      N/A                 BordetellapertussisMMGYLSALITVLSMGTFLGIVWWAWSSHRQSANRESALLPFALPDEDGPAQQDGAMQP
2125887..2126825                   cytochrome oxidase subunit III; AV745_10180                                          N/A                 BordetellapertussisMSDFVNGFWSYFIGIIAIGGIVWCVWLLYSQRRWLSTRPAGGVVEDTGHVWDGDLTELNNPVPRWWTWMYLLTCVFALGYLVLFPGVGSYQGTLGYTSVGEVKQKQAELAERVKPVYERFGGMTPEQLVADAPAREIGQRLFLNTCAQCHGSDAKGSTSFPNLTDGDWLYGGTPEIIAETIAKGRHGVMPPWKGVIDPRMAGDIAHYVRSLSGLAVDPVRVFRGKREFANYCVACHGVDGKGNQALGAPNLTDDVWLYGSSEASIVRTILDGRDNRMPAHEEVLTPEQIKLLSAWVWGLSNQAPAKAAEAAR
2126917..2128407                   cytochrome c oxidase accessory protein CcoG; AV745_10185                             N/A                 BordetellapertussisMTQGTPAAPGGPSDPQPPAWRPAPGPRRADGETLEQTLADVRSKIYPRSVSGIFARWRVVFVVLTQLIFYGLPWLQWNGRQAVLFDLGARKFYLFGLVLWPQDVVYLAVLLVISALALFLFTAVAGRLFCGYACPQTVYTEIFMWIERRVEGDRIARIRLDEAPWSARKLRIKATKHVLWLAVAWWTGSTFIGYFAPIRELGHQLFALQLGGWQWFWMLFYGFATWGNAGFMRESVCKYMCPYARFQSVMVDHDTFVVTYDKRRGEPRGGRSRKIDHKAAGLGDCVDCSLCVQVCPTGIDIRDGLQYMCIGCGACIDVCGQVMDKMRYAPGLIRYTSERAVDEGLDGRRARSHLLRPRVLIYGGLILALAIAFAVSLGMRNPLRVNVIRDRGALGREVAGGLVENVYRLQIINTSDQPLRLQLTAEGIDGLAVLAGRDGSDVVEVEAAANKLVPVVLRAPRGDTAPGAHAIVVQARSQDTGRVLEVREPASFYLPE
2128493..2128645                   hypothetical protein; AV745_10190                                                    N/A                 BordetellapertussisMAGPLVAIIGCVITIYLAMTRYGDQPIAEGAVKRGLVVERVAAPAADARR
2128659..2128898                   hypothetical protein; AV745_10195                                                    N/A                 BordetellapertussisMRWRSLMWILWPSFLAAGVGSALIFALIDPLDVAIFGQVPTSRTGFYTVSFFVLWLVTALSSTVTAYLMPPGGQDETPF
2128994..2129737                   permease; AV745_10200                                                                N/A                 BordetellapertussisMDALHVVVVAGAVVAGFVQGLSGFGYGLTAMSVWAWSIDPRLAAALVVFGSLTGQLIAAFSVRRGFDWRRLLPFLLGGLVGIPIGVRILPMLDVHMFKALLGCFLVLWCPLMLAVKYLPRITAGGRLADAVVGGLGGVMGGIGGFTGTLPTLWCTLRGFARDEQRSIIQNFNLGTLLVTMATYVGTGIVTADMLPLFGLVALAMLIPTVLGTRLYLGISDQAFRRIVLGLLTLSGVAMLASSLPRLL
2129770..2130270                   GCN5 family acetyltransferase; AV745_10205                                           N/A                 BordetellapertussisMLIRSETPADQRAIFDVTQAAFRGHPHSEQTEAYIVQALRAAGALTLSLVAELDARVVGHAAFSPVQISDGSPSWFGLGPVSVDPAHQGRGIGTALIEHGLARLQARGAAGCVLVGEPAYYGRFGFRPEPGLVLPDMPPTHFLALTFGAPARGTVTYHPGFAARDA
2130369..2131292                   PHAGE_Bacill_G_NC_023719: gp245; AV745_10210; phage(gi593777701)                     2.67e-20            BordetellapertussisMQAVISVQGLSKTYASGHPALKNINLDIYRGEIFALLGPNGAGKTTLISIICGIVNPGSGRVLADGHDIVREFRAARDAIGLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRAMIAKALSHEPRILFLDEPTAGVDVELRHGMWQMVRRLRENGVTIILTTHYIEEAQEMADRIGVIRKGEIILVEDKHALMSKLGKKQLVIMLDAPLAALPALAGDYQLELAAEGTQLVYTYDNQVSGGIAALLRELDARGIGFHDLQSSESSLEDIFVSLVSAQT
2131289..2132050                   sugar ABC transporter permease; AV745_10215                                          N/A                 BordetellapertussisMNWYAIKAIYKFEMARAWRTLMQSVASPVISTSLYFVVFGAAIGSHMVEIDGVSYGAFIVPGMIMLSLLTQSVANASFGIYMPRFSGTIYEIHSAPISYVEIVLGYVGAAASKSILLGLIMLATARLFVPFHIDHPVWMLAFLVLTAVTFSLFGFIIGIWADGFEKLQIIPLMIITPLTFLGGTFYSIKMLPPFWQTVTLFNPVVYLVSGFRWAFYGSADVSLGVSLGMTLAFLLVCLLTVRWIFRTGYRLKT
complement(2132066..2133148)       hypothetical protein; AV745_10220                                                    N/A                 BordetellapertussisMQTESNPLAERFIARNLLDLAIRITLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHLATAGRWLLAGMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGVRIAGPEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFLLMVPMVVYVFLNNTPTVAIVFAVWCLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQQSPAG
2133351..2134301                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AV745_10225; phage(gi52430457)     2.98e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
2134400..2135350                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; AV745_10230; phage(gi52430457)     2.98e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(2135310..2135723)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; AV745_10235; phage(gi157166006)     1.67e-29            BordetellapertussisMNMEIRPVRTEADYKSALKEISRLMESDPELGTPDGDRLDVLATLVQAYEARHYPIDLPDPVEAIKFRMEQGGLTPKGLEPMIGKRNRVYEVLNRKRGLTLPMIWRLHTELGIPAESLIRSPAPPRCELSIGCIRPG
2136008..2136307                   PHAGE_Burkho_Bcep176_NC_007497: gp17; AV745_10240; phage(gi77864642)                 8.98e-10            BordetellapertussisMNRIGGVGIAWYRKEDYERVRAISNDAHTFPDTFEDWEKRAEERREEILKLGHVVIKAYIDPDTFPAWCRANRYKVDAKGRMAFASAEAHRVTSHVHKD
complement(2136629..2136707)       tRNA                                                                                 N/A                 GGGCCTCTAGCTCATGCCTGGTTAGAGCAGCGGACTCATAATCCGTTGGTGCCGAGTTCGACTCTCGGGGGGCCTACCA
complement(2136717..2138999)       PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; AV745_10250; phage(gi331028036)     8.10e-39            BordetellapertussisMTKSTGKSPSAIDAATAQSTTAKRAASMAAEKAPAKTAVKVAKPAAKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAEDKLADLVGAARPAPSGRRPGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVSPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADEDEGDDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQTELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETNLQWVLDEVAAAHAYSETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
complement(2139685..2141715)       PHAGE_Helico_phiHP33_NC_016568: DNA primase; AV745_10255; phage(gi371671350)         5.15e-52            BordetellapertussisMIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENHSPRQQAESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGKGEPKYLNSPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLALQGIANAVATLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIPECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADEAPPDWAFEPVHDFEPDAYSVGAVDGEPSMPAAGGWQERKGRQGGDWKGKKGDWKGKKGDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGDQQLEVIDHGPHLGLVRDLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRMEFDAARAEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAQ
complement(2141735..2141947)       PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; AV745_10260; phage(gi460042545)     3.46e-05            BordetellapertussisMPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY
2148933..2148944                   attR                                                                                 N/A                 CGCGCGGCGGGC

#### region 3 ####
2578019..2578774                   PHAGE_Bacill_G_NC_023719: gp350; AV745_12335; phage(gi593777806)                     3.55e-23            BordetellapertussisMARLDNADATSMTGRPPLIMNDQRKSSRASCRASANYLRAEAALPRRRYPQPPVSGAATLQELQAQVDTLELENARLRRLALTDDLTGAYNRRYFATMLRDALRERVRGGGLALCLFDIDNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAVLSAPSASAALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRAKQAGKNRLHLIASRTAGA
complement(2578790..2578951)       hypothetical protein; AV745_12340                                                    N/A                 BordetellapertussisMENDPLAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIEPPVISQEG
2579045..2579560                   PHAGE_Myxoco_Mx8_NC_003085: hypothetical protein; AV745_12345; phage(gi15320584)     4.76e-11            BordetellapertussisMTPGPRTSPLVFASASIQAIKAGKQRQTRRIVKPQPPPAATLWYCDPAHAERWIAATARPDDATPAQTVSKWLVCPYGKPGDLIDLAHESGQPFGRAILMGVRIQRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWCERYGARAWAANPWVWVLEFRLLNQNGH
2579661..2579673                   attL                                                                                 N/A                 CCCCAGCGGGACA
2579833..2580150                   virulence factor; AV745_12350                                                        N/A                 BordetellapertussisMKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVAPAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPRYYKGHRHYDRGHRGHRGHGRGHWRD
complement(2580338..2580574)       hypothetical protein; AV745_12355                                                    N/A                 BordetellapertussisMIGDFRVRCTVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVSYQDREDAERTSQQIFERINGVRFNGEPEFAHASA
complement(2580865..2582220)       PHAGE_Bacill_G_NC_023719: gp287; AV745_12360; phage(gi593777743)                     2.79e-09            BordetellapertussisMLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQALPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGASSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPEHSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQNKPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP
complement(2582267..2583607)       PHAGE_Bacill_G_NC_023719: gp70; AV745_12365; phage(gi593777538)                      1.07e-96            BordetellapertussisMSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAYAADEQYFPDGLNPTFYRPTDRGLEAKIQQKLAFLDELDAQERARKR
complement(2583709..2584341)       outer membrane lipoprotein carrier protein LolA; AV745_12370                         N/A                 BordetellapertussisMHMIRRAAGALAVFAVAALAAAPAWAATAQEQLDTFVATVKGATGSFKQSTVSPQGATQPAQSGTFAFQRPGKFKWAVQLPYEQLIVSDGKQVFQYDPDLAQVTVRQVDQAIGTSPAAILFGAGQLSQAFAVSALPDRDGLQWLRAKPRNADAGFSQVDIGLRDNQPARIELVDAFGQTTRVELSNLLPGAVPASEFQFTPPQGVDVVKM
complement(2584341..2586710)       PHAGE_Mycoba_Minerva_NC_026584: FtsK; AV745_12375; phage(gi764159392)                3.29e-97            BordetellapertussisMSRMPRISNATPRASRNTRNGPSPFQARISALLREARWILFAALAAWLTLVLATWSPADPGWSHSVSGDAIHNGGGTLGAYLADILLYLFGFSAWWWVVLLLHRVRAGYRRLASNLRVTSGKQPDALPRVHWEEGIGFVLLLTGSLGIEALRLYSWGMHLPGGTDGESGAGGVIGQMLAGWLSRGVGFTGGTLALLVLLAVGLSLFFSFSWLQIAERVGSWLEGLVRRVRDSYAAREDRKVGEVAKAVRTEQVVAKQEKLVHEQPVRIEPAITVVPRSDRAEKEKQQSLFAPPAGESDLPAIGLLDPPLQNQETVSAETIEFTSRLIEKKLADFGVSVVVVAAQAGPVITRYEIEPATGVKGSQIVNLAKDLARALSLVSIRVVETIPGKNLMGLELPNPRRQMVKLSEILGSQTYHASHSVLTMALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINAMILSLLYKADASHTRLILIDPKMLEMSVYEGIPHLLAPVVTDMRHAANALNWCVGEMEKRYRLMSKMGVRNLAGYNSKIRDAIKREEPIPNPFSLTPDAPEPLQALPHIVVVIDELADLMMVVGKKIEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQMGAETLLGQGDMLYMPPGTGLPVRVHGAFVHDDEVHRVVEALKAQGEPNYIDGLLEGSEGETGDGLSSVTGMGDAESDPMYDQACEVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQAGMVSPMQSNGNREILVPAREEA
2586743..2587702                   PHAGE_Bacill_G_NC_023719: gp344; AV745_12380; phage(gi593777800)                     1.45e-69            BordetellapertussisMSTPKHAKVLILGSGPAGYTAAVYAARANLSPALITGLAQGGQLMTTTEVDNWPADVQGVQGPDLMQRFLQHAERFNTEILFDHIAKVDLSRRPFTLTGDTGNLYTCDALIIATGASAKYLGLASEQAFMGRGVSGCATCDGFFYRNKDVVVIGGGNTAVEEALYLSNICRKVTLIHRRDKFRAEPILVDKLMDKVANGNMELKLFHTLDEVLGDDSGVTGVRIRSTETDATEDLDVDGCFVAIGHQPNTGIFEGQLEMKDGYIITKSGLSGMATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRWLENAGQ
2587689..2588375                   DNA mismatch repair protein MutS; AV745_12385                                        N/A                 BordetellapertussisMRGNKTGLADLKRLHEQVRETRARAEAAEREAAARASAAAPEADVAAFRRAVQAATPLKPSGRLANRRPDATPATAAAVASRRAAALGEAAPRADAGVSDASDIGALLTDGGTAYVRAGVAPDTARNLKRGQWRVGAELDLHGLRVEQARHAVLSFLDECLEHGIRCVRIVHGKGYGSQGLEPVLKDKARTWLVQKADVLAFSEAPERGGGAGALLVLLRQAEAGGRP
2588372..2588704                   PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; AV745_12390; phage(gi311992758)     3.92e-10            BordetellapertussisMNSWIHLSMAIVAEIIATSALKSSEGFTRLLPSLVTVAGYAIAFYFLALTLRVIPVGVAYAIWSGVGIVLISLVGALLFKQHLDLPAIIGIALILAGVVVMNVFSKSVGH
2588777..2588789                   attL                                                                                 N/A                 TGGAAATCGCCGA
2588868..2589770                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AV745_12395; phage(gi971753894)     1.89e-11            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
2589917..2590819                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AV745_12400; phage(gi971753894)     2.08e-11            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
complement(2590816..2592882)       PHAGE_Aeromo_44RR2.8t_NC_005135: hypothetical protein; AV745_12405; phage(gi37651715)     6.58e-08            BordetellapertussisMPFTGNTPQEFEQRLRRIYTLYTLGFILLVLLLALAELMGMARSWIGYVFLLVTVSLYACIGIVCRTSDQVEYYVAGRRVPAFYNGMATAADWMSVASFIGVAGTLYLTGYGGLAYIMGWTGGYVLVALLLAPYLRKFGQYTIPDYLGARYGGKLPRLAGVFCAILCSFTYLVAQIYGVGIITTRLTGISFELGIFVALGGMLVCSFLGGMRAVTWTQVGQYIILVIAYLVPVVWLSVKHTGMPVPQLSAGTVLQEITEKEVYLAHDPGERAVRQLWRSRADEMDERLRALPDSLAHEKDRLRGRLAQLNASDAPMVEIRSLERELASYPATVEEARTLWSQARAAFEARATPPVPHAEPFPAEDPRERENMRINFLALVLCLMLGTAGMPHILMRSYTTPSVGEARRSVCWSLLFILLLYFMAPALALLVKYEVYTQVVGTSFLSLPSWVHAWSAVDIHLLDVLDVNRDGIVQLGEISMGADVVVLAMPEIGGLPYVVSGLVAAGGLAAALSTADGLLLTLSNSLSHDTWYRVVSPRMSAGRRVMVSKILLLLVAFGAAWVAARKPADILFMVSAAFSFAASSFFPALVMGVFWRRANKWGATLGMFAGLAATFAYMAHTHPWLREWVFGVTRAEPVDLWWGIQPVAAGVFGAPMAFLTIIVVSLLTPRPDSATEALVDYLREPGGR
complement(2592882..2593154)       hypothetical protein; AV745_12410                                                    N/A                 BordetellapertussisMPESRVKSEPSPAPYWRRNVRLIVLLLACWAGLTFVPAYFARQLAFDFIGWPFSFWMAAYGAPLAYLILIVIYALVMNRFDARSRTRRDD
2593938..2595722                   ATPase; AV745_12415                                                                  N/A                 BordetellapertussisMNADFLGLLLLYLAILLCAAPLLGRHIRQAINGERTWLTAWGQPLERGLYRLAGVDPAAEMDWRRYAVAMLVFNVLGVLAVYALQRLQGWLPLNPAGLPGVAPDSALNTAISFVTNTNWQGYAGESTMSYLTQMLALTVQNFVSAATGIAVLIALVRGLARHSAATLGNFWADLVRATLYVLLPLSFILALALVSQGVVQNLDPYVEAQTVQAQQYETARLDAQGQPMTGPAGQPLTDTVVTRVQTLPMGPVASQEAIKLLGTNGGGFFNANSAHPYENPNAWSNLLEMLAILLIPAALCWTFGEMVGSRRQGVAILAAMTVLFAGFAASAAYFEQQPTPALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSFSALGGVTPLLQMQLGEVIYGGVGSGLYGMLAFAILAVFIAGLMIGRTPEYLGKKIEALDMQMVALVILATPALVLAGTAVAVLADAGRAGVLNPGAHGFSEILYAMSSAANNNGSAFAGLSANTPFYNVLLGLAMWFGRYTIIVAILALAGSLAAKPRLPASVGGMPTTGPLFVALLVGAVLLVGALTYVPALALGPVAEHLQP
2595746..2597911                   potassium-transporting ATPase subunit B; AV745_12420                                 N/A                 BordetellapertussisMANSPTPLSAQAGLPAASPSLPAATPHRAFGLWSRALAGPALRDTLRKLSPAAQLRNPVMFVVYAGSILTTLLWLLALAGLAEAPAGFILAVAAGLWFTVLFANFAEALAEGRGRQQAAALRGLRTTIEARVLTGFRDSDAAAALPPYWRSRATSRPSGALRRDDVVLIEAGETVPGDGQVIAGIASVDKSAITGESAPVIRAAGSDFCSVTGGTRVLSDWIFVRIAADPGDSFLDRMIAMVESARRQKTPNELALTILLVGLTLVFLLVVASLLPFSMYAVSASGAGQAVSITVLVALLVCLIPTTIGGLLSAIGVAGMSRMMRANVIATSGRAIEAAGDVSVLLLDKTGTITFGNRQAAAFVPAPGVSPAVLAEAARLASLADETPEGRSIVALAERILDTRSEAPAGARFVPFSAQSRMSGVDLDGRLIRKGAADALARWLGEGQGGLPAAVARDVDDVARRGSTPLVVAEGGQALGVIELKDIVKPGIQPRFAALRRMGIKTVMITGDNALTAAAIAAEAGVDDFLAEATPQAKLELIRACQADGHLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGALTTFSVANDVAKYFAIIPAAFMAVYPQLAQLNVMGLATPASAILSAVIFNALIIVALIPLALKGVRYRPLGAAVLLRRNLLVYGLGGLLAPFAGIKLIDMALAALGWT
2597922..2598521                   potassium-transporting ATPase subunit C; AV745_12425                                 N/A                 BordetellapertussisMTMHPPLPPAGRPLRAALVIFLALSVLVGLLYPLATTGVARLLWPFQAGGSLLEQDGRVVGSALIGQSFTDPRYFWGRPSATAPMPYNAAASGGSNLGPANPALAQAVRARIAALRAADPGNPAPIPVDLATASGSGLDPHISPAAAGYQAARVARARGLPTATVEQLIARHTERPVPDILGEPVVNVLALNLALDRLR
2598587..2601301                   histidine kinase; AV745_12430                                                        N/A                 BordetellapertussisMADPGNDRLDPDRLLQTLEQAQSDARRGRLRIYFGACAGVGKTYAMLAAARAQAAQGVDVVAGLVETHGRADTAALLDTLPALPLQTLDFQGRRLREFDLQATVARRPRLLLLDELAHTNAPGARHAKRWQDVEELLAAGIDVWTTLNVQHLESLNEAVGGITGVRVRETVPDSVFDAADEIILVDLSADELLRRLREGRVYVPEQARHASRHFFRKGNLIALRELALRRTAEHVDDDVRAYRHERAIEPVWRTREAVVACIDADPHAEHVLRSAHRLAQQLDCEWHAITIEAPRVAPLPRAGRARLDQALALAETLGAHVETVAGTDMVDAATRYMRRHNITKAVVGRDAWRRRGLSGLLDAALTPGRLLRRRSFADVLASACPEADIVRVGAPSAATAAPRRDPRSWRNASAPAGHAAAGAYLWALAYCAAATLASRLAFPVLHQTNIVMIFLLAVVAAALRHGRGPAALASVVSVALFDFFFVQPLASFAVSDVQYLLTFAVLLTVGLLIGQLTAGLRQQARAAARREADARGLYEFARELSAALQPEQIAGAASAFLNAAFGARGALYILGLDDRLRLAPGAGDAALEPTLAQWAFDHGQACGAGTDTLSNSPVLYLPLRAPMRVRGVLALHHAGPPLYSAAPARRQLDAYATLIAIAIERLHYVEVAQQALLSIESERLRNALLAAVSHDLRTPLTSLLGMAETLQRSPAAMTPAALETVAAMQDQARRMHALVVNLLDMARLQSHDAPLRRQWQSVEELVGSALAAMNAALQDRPVTVAPLSALPLVKCDGILIERVLCNLLENAAKYTPPGSAIHIDALADAHTLQVRVADDGAGVAQADRQRIFEKFARGQRESAPPPAQASGWRYAAPSWTPTRAASGSSRPGACAAPASSSRCR
2601343..2602038                   two-component system response regulator; AV745_12435                                 N/A                 BordetellapertussisMPDYRPTVLIVEDDAHIRRFVRSALEAEGCEVHETDTVRRGLIEAGTRQPDAVVLDLGLPDEDGMALLRELRGWTELPVLVLSARSSEGDKIAALDAGADDYLTKPFGVGELLARLRVLLRRHARGGAGNAAQAGFGDVQIDLARRVVTRAGEHVHLTQIEYRLLAALVASRGKVMTHRELLREVWGPSHVESHHYLRIYMGHLRQKLEADPARPRYLLTEIGVGYRYAGE
complement(2602047..2602949)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AV745_12440; phage(gi971753894)     2.14e-11            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(2603096..2604337)       hypothetical protein; AV745_12445                                                    N/A                 BordetellapertussisMPVVQLKIFAVLALLIPALALVSKGGGVAVFYTLAVLTSLAIMVYAGRGRAQPSWRDLAWPGAVLAVPLLSMLVTNAYLGIWSGSEFEKLLRFALALPLFWVLLCVPRPWLQQIQWSLLFSAYAGAIMLYVIVGWYGGRMQVSFYGAEYNAVAFANLTLFFGFASLLTLGWRLTPWPGLEALLKVGAACAAVYAAHVSETRSSWMLLPVFGLVFLMSRRVWSLRRKLAVGLVLVAALAVLAGVMLSSQGNRMHKILTDLQRYTVQNDRNTSVGIRLQLWHASWMIFQEAPVLGVGPRNFRAELAKLRDQGVVTPEVASGYGEPHNDFMAAMAGYGLLGLLSILLLYLAPAWVFLRRMASDDRVIRTGAQIGLLFCLGYCAFSLTEMMFRNMRSVPIYSATLVLLLALTAPRAA
complement(2604487..2605467)       hypothetical protein; AV745_12450                                                    N/A                 BordetellapertussisMAKPASDMPPYDKAAALRGLAGARRVALLMAPRLGDTLLMMNMARNLAAHGREVSIFGDYIHGLRDWFPGLDIRPSLSEEQAGQVLPGYDCAAQMHVGWPYALHAHQPNYFYYDAHVAITGRGFVKLFQIRDFCREQLGLAQAGADNGLRPPPQVQPHRSHPRRVALHPTSTGAQRCWAPRHFKELGLRLLHEGYEPNYIVAPHERAEWSWVLDHGLHLPQFPSLSEVAGFIHASGWFIGNESGIGHLASNVGVPTLSLTGRPTRTRAWRPAWSTSRIVYPALIPGGRWRDRLWREWLSPRRVMSAFHKLQADDRRQPVGVPWGKI
complement(2605666..2606922)       isocitrate dehydrogenase; AV745_12455                                                N/A                 BordetellapertussisMSYQHIKVPTGGQKITVNADYSLNVPDQVIIPVIEGDGTGADITPVMIKVVDAAVQKAYAGKRKIHWMEVYAGEKATKVYGPDVWLPEETLDAVKDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSEDIYAGIEYMAESEQAKDLIQYLQTKLGVTKIRFPNTSSIGIKPVSREGTERLVRKALQYAIDNDRASVTLVHKGNIMKFTEGGFRDWGYALAQNEFGAQPIDGGPWCKFKNPKTGREIIVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADLIIASMEKSILSKKVTYDFARLLEGATQVSCSGFGQVMIDNM
2607125..2607550                   hypothetical protein; AV745_12460                                                    N/A                 BordetellapertussisMFNPSRDQVREFFIETWRKHRATEVLTPLESMALDWILEHPEYHGDLESPEAMTAEYPVEHGRTNPFLHLSMHLAIAEQLSIDHPRGIRAAYQRLVGRGDAHQAAHEIMECLGQVVWEAQRLGTPLDSDAYIELIRQRAER
complement(2607592..2607954)       cytochrome; AV745_12465                                                              N/A                 BordetellapertussisMKRFTFALAGIVLATAGVSAQAQDVVAGKAVFDKFNCASCHGADAKTSVQPEYPVLAGQHADYLAHALKAYKRGAAGSAATANVRKNPIMGAFAAQLSDQDIRNVAAWLAAQPSDLGVRQ
complement(2607967..2608320)       cytochrome C; AV745_12470                                                            N/A                 BordetellapertussisMKLRISMTRTVSVLAVLASCAIAGPAAAADAAPVGNAQNARDKVSMCIGCHGIPGYKASFPELYHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLAAYYSSLK
2608444..2608456                   attR                                                                                 N/A                 TGGAAATCGCCGA
2608487..2609437                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AV745_12475; phage(gi971753894)     2.86e-11            BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
2615795..2615807                   attR                                                                                 N/A                 CCCCAGCGGGACA

#### region 4 ####
complement(3751538..3751744)       integrase; AV745_17855                                                               N/A                 BordetellapertussisMSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAEQRAAIVETIARGEFDPLVAPRRQ
complement(3751741..3752656)       PHAGE_Burkho_phi1026b_NC_005284: gp58; AV745_17860; phage(gi38707948)                7.55e-08            BordetellapertussisMLRIEDLQLAAALAQAPSLSAAARALNVTPPALSMRLRKLEAGLGLALAVRSARRLSLTPEGERLAREAAALLAQLQALPESLRRDDSRLTGTLRVAAPFGYGRWHIAPVLARLAQRHPELRVQLDLRETPWPDHQDADAVVHIGAVRDSSWVTRRLADNERWLCASPQYLQDHGMPREPRDLLHHRCICIRENDEDASLWRFRRADAGAAGRKSAETVRIAPAYVSNDGNVARAWAEQGLGLVVRSQWDAEGAVARGARRAGARHAALAIGQRARHAAGARPQGPQRPRQGAARMLRRTGGARMA
3752749..3753408                   haloacid dehalogenase; AV745_17865                                                   N/A                 BordetellapertussisMSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEYLRLAYGCGRYVPYEQLVREAARATGLPESAPAALEAGWHELPVWDDARALLRALRPHCKLAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAAAFVAGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR
3753436..3754581                   alanine racemase; AV745_17870                                                        N/A                 BordetellapertussisMTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAAGITDILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW
3754722..3755057                   hypothetical protein; AV745_17875                                                    N/A                 BordetellapertussisMSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAPTKDQTQA
complement(3755132..3755992)       PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; AV745_17880; phage(gi414086941)     3.01e-83            BordetellapertussisMIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLVRVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAELYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAPVQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADARRQQFTAEADGIRLRGEAEAASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALPFIGIK
3756039..3756050                   attL                                                                                 N/A                 CGGCGGCGATGC
complement(3756256..3756957)       glutathione S-transferase; AV745_17885                                               N/A                 BordetellapertussisMAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMRRRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA
3757127..3757522                   enamine deaminase RidA; AV745_17890                                                  N/A                 BordetellapertussisMPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDGTKLADAPFEAQARQVLENVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGAARPARAVVPTGPLHYGFKVEVEAVALA
3757680..3758582                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AV745_17895; phage(gi971753894)     1.89e-11            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3758590..3758603                   attL                                                                                 N/A                 ACAATGAAGCCTCT
3758593..3759234                   hypothetical protein; AV745_17900                                                    N/A                 BordetellapertussisMKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEEVLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVYVVLAAAMGTDTWTVRTKEIPGGVRVSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQWMTCEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG
3759401..3759643                   hypothetical protein; AV745_17905                                                    N/A                 BordetellapertussisMEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPELLQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA
3759790..3760692                   PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; AV745_17910; phage(gi971753894)     5.06e-12            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3760728..3761195                   PHAGE_Burkho_Bcep176_NC_007497: gp36; AV745_17915; phage(gi77864661)                 3.16e-55            BordetellapertussisMSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSERESYIKFSHAEPVALTAILASNGLDDALWALRCVPGVDRDARLFAVWCARQVEHLMTDQRSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT
3761215..3761426                   hypothetical protein; AV745_17920                                                    N/A                 BordetellapertussisVPGTGDTMETTYISDEQAVQVMAQLGGSFMKQLARLWMTADPLRRARAKRRSATTSTVTATWLHGRTRPGA
3761429..3761806                   hypothetical protein; AV745_17925                                                    N/A                 BordetellapertussisMLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
3761803..3761985                   hypothetical protein; AV745_17930                                                    N/A                 BordetellapertussisMSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
3761989..3762975                   PHAGE_Entero_phi80_NC_021190: phage recombinase-annealing protein RecT; AV745_17935; phage(gi824479614)     3.19e-76            BordetellapertussisMNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDPAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGRDDQGGIQE
3762972..3763619                   PHAGE_Pseudo_YMC11/02/R656_NC_028657: putative exonuclease; AV745_17940; phage(gi966197818)     1.62e-35            BordetellapertussisMNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFADFVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA
3763677..3764204                   hypothetical protein; AV745_17945                                                    N/A                 BordetellapertussisMFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEFHPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLIDRVRLKHDLKGAKVLIGFGLGGSSDIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAIEKQGALGLNLEPEAA
3764241..3765425                   PHAGE_Acinet_Ac42_NC_014660: hypothetical protein; AV745_17950; phage(gi311992508)     3.60e-09            BordetellapertussisMENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVADERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALDAAITALRWSAGALQALNIEADKITLDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVMTERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPLDTSPGHSAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYENRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDADIPASLAQLVAAVKGMTKLYPHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN
3765436..3765777                   PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; AV745_17955; phage(gi985757664)     5.12e-13            BordetellapertussisMELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLTDDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGCAAHKYGGIEAATRRAIVRAAAEIGAKMQEAAHA
3765770..3765889                   hypothetical protein; AV745_17960                                                    N/A                 BordetellapertussisMPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE
3765890..3766090                   hypothetical protein; AV745_17965                                                    N/A                 BordetellapertussisMEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
complement(3766087..3767076)       PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: integrase; AV745_17970; phage(gi971753914)     5.63e-59            BordetellapertussisMGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVRIARFLKEEADLCAKLIHTISTADLGAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRERIYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRAVALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD
3772159..3772172                   attR                                                                                 N/A                 ACAATGAAGCCTCT
3776155..3776166                   attR                                                                                 N/A                 CGGCGGCGATGC
