gi|00000000|ref|CP014617.1|  Mycobacterium africanum strain UT307 genome. 4493502, gc%: 63.41%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
3920964..3921272                   PHAGE_Mycoba_Macncheese_NC_042338: minor tail protein; AZ248_18135; phage(gi100056)     9.24e-13            MycobacteriumtuberculosisvariantafricanumMPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA
complement(3921344..3922963)       PHAGE_Vibrio_VAP7_NC_048765: hypothetical protein; AZ248_18140; phage(gi100134)      1.57e-99            MycobacteriumtuberculosisvariantafricanumMSKLIEYDETARRAMEVGMDKLADTVRVTLGPRGRHVVLAKAFGGPTVTNDGVTVAREIELEDPFEDLGAQLVKSVATKTNDVAGDGTTTATILAQALIKGGLRLVAAGVNPIALGVGIGKAADAVSEALLASATPVSGKTGIAQVATVSSRDEQIGDLVGEAMSKVGHDGVVSVEESSTLGTELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLAGGVAVIKVGAATETALKERKESVEDAVAAAKAAVEEGIVPGGGASLIHQARKALTELRASLTGDEVLGVDVFSEALAAPLFWIAANAGLDGSVVVNKVSELPAGHGLNVNTLSYGDLAADGVIDPVKVTRSAVLNASSVARMVLTTETVVVDKPAKAEDHDHHHGHAH
complement(3923058..3923360)       PHAGE_Bacill_0305phi8_36_NC_009760: GroES; AZ248_18145; phage(gi156564025)           1.50e-17            MycobacteriumtuberculosisvariantafricanumMAKVNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK
complement(3923627..3924661)       PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: methyltransferase type 11; AZ248_18150; phage(gi100001)     5.33e-77            MycobacteriumtuberculosisvariantafricanumMTTVLGIETSCDETGVGIARLDPDGTVTLLADEVASSVDEHVRFGGVVPEIASRAHLEALGPAMRRALAAAGLKQPDIVAATIGPGLAGALLVGVAAAKAYSAAWGVPFYAVNHLGGHLAADVYEHGPLPECVALLVSGGHTHLLHVRSLGEPIIELGSTVDDAAGEAYDKVARLLGLGYPGGKALDDLARTGDRDAIVFPRGMSGPADDRYAFSFSGLKTAVARYVESHAADPGFRTADIAAGFQEAVADVLTMKAVRAATALGVSTLLIAGGVAANSRLRELATQRCGEAGRTLRIPSPRLCTDNGAMIAAFAAQLVAAGAPPSPLDVPSDPGLPVMQGQVR
complement(3924658..3925134)       PHAGE_Pseudo_vB_PaeS_PAO1_Ab19_NC_042115: hypothetical protein; AZ248_18155; phage(gi100011)     7.53e-06            MycobacteriumtuberculosisvariantafricanumMTADTEPVTIGALTRADAQRCAELEAQLFVGDDPWPPAAFNRELASPHNHYVGARSGGTLVGYAGISRLGRTPPFEYEVHTIGVDPAYQGRGIGRRLLRELLDFARGGVVYLEVRTDNDAALALYRSVGFQRVGLRRRYYRVSGADAYTMRRDSGDPS
complement(3925131..3925751)       PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; AZ248_18160; phage(gi16129761)     4.06e-11            MycobacteriumtuberculosisvariantafricanumMSTVLAIDTATPAVTAGIVRRHDLVVLGERVTVDARAHAERLTPNVLAALADAALTMADLDAVVVGCGPGPFTGLRAGMASAAAYGHALGIPVYGVCSLDAIGGQTIGDTLVVTDARRREVYWARYCDGIRTVGPAVNAAADVDPGPALAVAGAPEHAALFALPCVEPSRPSPAGLVAAVNWADKPAPLVPLYLRRPDAKPLAVCT
complement(3925763..3926269)       tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; AZ248_18165               N/A                 MycobacteriumtuberculosisvariantafricanumMSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS
complement(3926266..3927426)       alanine racemase; AZ248_18170                                                        N/A                 MycobacteriumtuberculosisvariantafricanumMAMTPISQTPGLLAEAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTYREAENR
complement(3927786..3928148)       hypothetical protein; AZ248_18175                                                    N/A                 MycobacteriumtuberculosisvariantafricanumMPNPVTMLYGRKADLVILPHVLAEERPHPYSTPGRKRGAQIALTTGIDALASFAPQIVNPRHGLSRVVQCLGGCENKRHAYFRSISKTPHIRARGVPSVCAVRTVGVDGAKRPPKPIPVQ
3928307..3928380                   attL                                                                                 N/A                 ACAGATGCATCCAATGATACCAGCGGAGTATATCTCCAACATAATATATGAAGGCCCGGGCGCTGACTCATTGT
3928311..3928841                   hypothetical protein; AZ248_18180                                                    N/A                 MycobacteriumtuberculosisvariantafricanumMHPMIPAEYISNIIYEGPGADSLFFASGQLRELAYSVETTAESLEDELDELDENWKGSSSDLLADAVERYLQWLSKHSSQLKHAAWVINGLANAYNDTRRKVVPPEEIAANREERRRLIASNVAGVNAPAIADLDAQYDQYRARNVAVMNAYVSWTRSALSDLPRWREPPQIYRGG
3929108..3929638                   hypothetical protein; AZ248_18185                                                    N/A                 MycobacteriumtuberculosisvariantafricanumMHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVAGVNTPAIADLEAQYEQYRAENIQAMDRYLSWTRFALSKLPRWREPPQIHRSG
complement(3929956..3930711)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; AZ248_18190; phage(gi557307613)     9.49e-27            MycobacteriumtuberculosisvariantafricanumMSICDPALRNALRTLKLSGMLDTLDARLAQTRNGDLGHLEFLQALREDEIARRESAALTRRLRRAKFEAQATFEDFDFTANPKLPGAMLRDLAALRWLDAGESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGGHADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPNNWYGLFPNPVVAESLLDRLINTSHQILMDGPSYRPRKRPGRTTS
complement(3930829..3932040)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; AZ248_18195; phage(gi557307612)     1.77e-20            MycobacteriumtuberculosisvariantafricanumVATIAQRLRDDHGVAASESSVRRWIATHFAEEVARERVTVPRGPVDAGSEAQIDYGRLGMWFDPATARRVAVWAFVMVLAFSRHLFVRPVIRMDQTAWCACHVAAFEFFDGVPARLVCDNLRTGVDKPDLYDPQINRSYAELASHYATLVDPARARKPKDKPRVERPMTYVRDSFWKGREFDSLAQMQQAAVTWSTEVAGLRYLRALEGAQPLRVFEAVEQQALIALPPRAFELTSWSIGTVGVDTHLKVGKALYSVPWRLIGQRLHARTAGDVVQIFAGNDVVATHVRRPSGRSTDFSHYPPEKIAFHMRTPTWCRHTAELVGPACQQVIAEFMRDNAIHHLRSAQGVLGLRDKHGCDRLEAACARAIEVGDPSYRTIKGILVAGTEHAANEPTTSSPASTAG
complement(3932123..3932320)       integrase; AZ248_18200                                                               N/A                 MycobacteriumtuberculosisvariantafricanumMLDLVELLTHWHAGRSQVRLSESLGIDRKTVRKYTAPAIAAGIEPGGEPLSAEQWAELIGGWFPE
3932836..3933135                   PE family protein; AZ248_18205                                                       N/A                 MycobacteriumtuberculosisvariantafricanumMSFIFTTPQALDNAAKSVSGIHDLWLADSKTAITVVNAIVPPAADPVSNRMVGRIIEHMAQYQQISSQALEYLRGFSQGLAENAEAYRLAEAQNSTTFD
3933221..3933763                   hypothetical protein; AZ248_18210                                                    N/A                 MycobacteriumtuberculosisvariantafricanumMPFTLTPAHQISYQMYAGPGADSMRAASQQLRELAFSADTTADSLNDTLFDLDDTWIGGSSAFMTDAALRYLKWLSKHSKRLWQTANTIHHLANTYEDIRQRVVPPAAIEDNREEVRRLIASDITGENAPAIAELDEQYQSYGDTNVQAMNLYAERAQTLLSQLPRWQEPPQIHQRGRGG
3933854..3934249                   hypothetical protein; AZ248_18215                                                    N/A                 MycobacteriumtuberculosisvariantafricanumMTINNQFDDADTHGATSDFWCDAEWAGLRGPVAAGLGRAALVGYLSVPQGWTEANQANLAAGTEAEPNQALGWLPMQDIDAAAEAAAQPSHALGWLPIEEIDAAASDDGEVSSSPQLPPRPFMMPHTPSGG
3935653..3935726                   attR                                                                                 N/A                 ACAGATGCATCCAATGATACCAGCGGAGTATATCTCCAACATAATATATGAAGGCCCGGGCGCTGACTCATTGT
3935657..3936193                   hypothetical protein; AZ248_18220                                                    N/A                 MycobacteriumtuberculosisvariantafricanumMHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSSDLMADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIASNVAGVNTPAIAGLDAQYQQYRAQNIAVMNDYQSTARFILAYLPRWQEPPQIYGGGGG
complement(3936134..3937297)       PROPHAGE_Lactoc_Il1403: transposase of IS904H; AZ248_18225; phage(gi15674055)        1.30e-14            MycobacteriumtuberculosisvariantafricanumMIDTAIEEMIPLIGVRAACAATGRAPASYYRAHSKRLSAQSDTFTSTAVTDPSGPRESAQPRALSAAEREHVLAVLNSQRFADMAPAVVYATLLDEGIYLCSESTMYRLLRERGQTGDRRRQATHPAAVKPELVAHQPNSVWSWDITKLRGPAKWSYYYLYVILDIFSRYVVGWMVASRESKVLAERLIAQTLAAQHISADQLTLHADRGSSMSSKPVALLLADLGVTKSHSRPHTSNDNPLSEAQFKTLKYRPDFPKRFESIEAARVHCDRFFGWYNHEHKHSGIGLHTPADVHYGRADQIRRHRATVLDTAYRDHLERIRSQTTRATRATGLQRDQPTTEGGPADSINPRKSCLRNVDRFRPGLLDLPAPAPVDLRRLLPSGQIR

#### region 2 ####
4155355..4155702                   PHAGE_Escher_503458_NC_049341: hypothetical protein; AZ248_19220; phage(gi100008)     3.74e-05            MycobacteriumtuberculosisvariantafricanumMLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR
4156087..4156587                   transposase; AZ248_19225                                                             N/A                 MycobacteriumtuberculosisvariantafricanumMPGRVFASPADFNTQLQAWLVRANHRQHRVLGCRPADRIEADTAAMLTLPPVGPSIGWRTSTRLPRDHYVRLDGNDYSVHPVAIGRRIEITADLSRVRVWCGGTLVADHDRIWAKHQTISDPEHVVAAKLLRRKRFDIVGPPHHVEVEQRLLTTYDTVLGLDGPVA
4156587..4157333                   PHAGE_Escher_520873_NC_049344: primase; AZ248_19230; phage(gi100047)                 1.28e-45            MycobacteriumtuberculosisvariantafricanumMAAKTATNSRDVAAELAYLTRALKAPTLRGAIEQLADRARTKTWSYEEFLAACLQREVSARESHGGEGRIRAARFPSRKSLEEFDFDHARGLKRDTIAHLGTLDFVTLAIGIAIRACQAGHRVLFATASQWVDRLAAAHHSGTLQSELIRLARYPLLVVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVIALKGDSYRIKDRDLGRVPTVTADDQ
complement(4157487..4158053)       hypothetical protein; AZ248_19235                                                    N/A                 MycobacteriumtuberculosisvariantafricanumMAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAANDSAQDGFRHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVHVDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQPSAGQQGPS
complement(4158123..4159352)       PHAGE_Coryne_Poushou_NC_042139: hypothetical protein; AZ248_19240; phage(gi100031)     8.31e-133           MycobacteriumtuberculosisvariantafricanumMALPQSALSELLDAFRTGDGVDLIRDAVRLVLQELSELEATERIGAARYERSDTRVTDRNGARSRVLSTQAGDVELRIPKLRKGSFFPAILEPRRRIDQALYAVVMEAYVHGISTRAVDDLVEAMGVETGISKSEVSRICAGLDEIVGAFRTRTLGHIEFPYVYLDATYLNVRNGTGQVVSMAVIVASGIAADGSREILGLDVGDSEDETFWRGFLTSLKGRGLGGVRLVISDQHAGLVKALKRCFQGAGHQRCRVHFARNLLAHVPKDKADMVASMFRMIFSAPDAEAVHATWEEVRDRLAASFPKIGPLMDDARAEVLAFTAFPKAHWQKIWSTNPLERINKEIKRRSRVVGIFPNPAAVIRLVGAVLADMHDEWQASERRYLSEASMALLYPDSDNAVVAAISGGQ
complement(4159528..4160163)       PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; AZ248_19245; phage(gi526003651)     2.17e-05            MycobacteriumtuberculosisvariantafricanumMPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLVAMFKGILDAEPTYDF
complement(4160174..4160368)       hypothetical protein; AZ248_19250                                                    N/A                 MycobacteriumtuberculosisvariantafricanumMFVQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ
4160763..4160954                   PHAGE_Tsukam_TPA4_NC_030916: putative phosphoesterase; AZ248_19255; phage(gi100037)     2.46e-07            MycobacteriumtuberculosisvariantafricanumMERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGDIPT
complement(4160965..4161040)       tRNA                                                                                 N/A                 GCCGCCTTAGCTCAGTCGGTAGAGCGATTCACTCGTAATGAATAGGTCAGGAGTTCGATTCTCCTAGGCGGCTCCA
complement(4161119..4162327)       PHAGE_Nodula_vB_NspS_kac68v161_NC_048757: putative replicative DNA helicase; AZ248_19265; phage(gi100080)     5.24e-13            MycobacteriumtuberculosisvariantafricanumMMSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR
4162470..4164059                   PHAGE_Pelagi_HTVC008M_NC_020484: adenylate/guanylyl cyclase; AZ248_19270; phage(gi460042455)     4.03e-19            MycobacteriumtuberculosisvariantafricanumMATTAALPRRIHAFVRWVVRTPWPLFSLSMLQSDIIGALFVLGFLRYGLPPQDNIQLQDLPPVNLLIFVSTVIILFLAGAVVNLKLLMPVFRWQRRDNLLTEPDPAATELARSRALRMPLYRTLISLAVWATGGGVFILASWSVAKHAAPVVAVATALGATATAIIGYLQSERVLRPVAVAALRSGVPENVNAPGVILRLMLAWIPSTGVPLLAIVLAVAADKIALLHATPEALFNPILMMALAALGIGSVSTLLVAMSIADPLRQLRWALSEVQRGNYNAHMQIYDASELGLLQAGFNDMVRELSERQRLRDLFGRYVGEDVARRALERGTELGGQERDVAVLFVDLVGSTQLAATRPPAEVVQLLNEFFRVVVETVARHSGFVNKFQGDAALAIFGAPIEHPDGAGAALSAARELHDELIPVLGSAEFGIGVSAGRAIAGHIGAQARFEYTVIGDPVNEAARLTELAKLEDGHVLASAIAVSGALDAEALCWDVGEVVELRGRAAPTQLARPMNLAAPEEVSSEVRG
