gi|00000000|ref|CP016339.1|  Bordetella pertussis strain C927 chromosome, complete genome. 4095467, gc%: 67.71%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
122392..122405                     attL                                                                                 N/A                 GCGGGGACAGGCAC
complement(124468..125418)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_00565; phage(gi52430457)     1.10e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
125451..125522                     attL                                                                                 N/A                 GGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGCC
125869..125880                     attL                                                                                 N/A                 GCGGCGCTGCGC
complement(126070..127341)         hypothetical protein; BBB37_00570                                                    N/A                 BordetellapertussisMPVAFDRVYLHSAGYFMPGEPVDNDAMDQYIAPLNRISGRIKNRILAENGIRQRYYAIDPEGRTRWSNAQLAAQAIQACLARGDVDLSQVSLLASGSSGGDTLMPGFANMIQGELSAAPLETLSVHGICAAGVGAIQAAAQGIELGAHRRALAVASELPSRLFKRSRFAAPGYDADFDAHFLRWMLSDGAGAMLLGDASQPLAGAANGVRLRLKWIHQRSFSGDYPVCMQLGQSAGGQAHLDYGSWSEAEAAGALLLRQDILLLPHLFDIGIHEYAKLVHDGWVDPRQVSHFLCHYSSEKFIPVVEDLMDKAGLAIARERWFSNLAWRGNTGAASILIMLAEFLQTRTVQPDEQIFCYIPESGRFMAAYMLLQAEGPDETAQPARARAVPAAAPAGEVDFIAPPHDPAHAPQGLEPLLGELAAI
complement(127377..128255)         fatty acid desaturase; BBB37_00575                                                   N/A                 BordetellapertussisMVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
complement(128239..129015)         desaturase; BBB37_00580                                                              N/A                 BordetellapertussisMGQAFAALSVWQVMGYGLVFFGGIYLLFGAATWLLTQRVLPALGVGRPLDPRPLGPGQWRREFLQSGLSVLIFGLGMVFPWGLVQLGWARLDDAAGPWRIVAEILVLVIWNDVHFWINHRLLHTRLLRRFHLPHHRSVVTTPFSTYSFHPIEALMLGNVILLPMVVHDFSFSLLSVPLFSLFFNCVGHANYDFFPGVSYAHWFAASRRHHLHHACYQGNFGFQFTFMDRLFGTRLGADAAQGQLAAYRTRGAVGSAR
complement(129182..132160)         hypothetical protein; BBB37_00585                                                    N/A                 BordetellapertussisMQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQEVTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADANGAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDAATGRLTVSGQAEPGGSVTVTWPDGTTQTVRVDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAPVRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQNDGGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSTADMVAGEITVVAADASGNQSAPARTVFADAVDKTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKADGTYTATSRADMIGGNVTVVATDTAGNAAAPVRAAYADTVDRTPPVLDTPVLNVASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLQSGTVRVIATDAHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAASAEFTDQVDKTAPAVTIRAVTEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIATDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPGGASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKDFSQSRYFVPLTTRGGTDNEPLLRITTNQQIPTAELRVALKPYKTEDRAGRLVREAITLKWGNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKVISTL
132510..133460                     PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_00590; phage(gi52430457)     3.36e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
complement(133455..133862)         PHAGE_Pseudo_PS_1_NC_029066: major capsid; BBB37_00595; phage(gi985757701)           1.30e-57            BordetellapertussisMSISQMQVFNKYFMPAIIETLGQQIQKFNAASRGAIMLTTAGFEGDFLQESFYQAIHGARRRVDRYAANGSASPTDLTQLKHSSVKVAGGFGPIRYEPSQMTWLEKPTAEGIEVASRNFAEALLQDQLNTAIAALV
complement(133889..134491)         hypothetical protein; BBB37_00600                                                    N/A                 BordetellapertussisMPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEKLTKDLAEKDDALTQHLIDSGLSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAPANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
complement(134614..134856)         PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; BBB37_00605; phage(gi985757698)     2.84e-23            BordetellapertussisMPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVIETRIGVFETARTWSGGTKVLLCALCFMRGERVVLK
complement(134862..135974)         PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; BBB37_00610; phage(gi985757697)     1.96e-127           BordetellapertussisMSSLQTELYDATVRHAIDLVRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKELLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQGQLFDSLGIEFTTRGVTAGQVYAGAMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYADGLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLRYEPDSHKPIGHKVPWGAGPGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFAQAGVE
complement(135946..137364)         PHAGE_Escher_K1_dep(4)_NC_027993: putative structural protein; BBB37_00615; phage(gi937456911)     1.43e-55            BordetellapertussisMPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTARVRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
complement(137367..138644)         PHAGE_Escher_K1_dep(4)_NC_027993: putative terminase; BBB37_00620; phage(gi937456910)     2.30e-132           BordetellapertussisMPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
complement(138631..139116)         PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative terminase small subunit; BBB37_00625; phage(gi589286873)     2.92e-44            BordetellapertussisMPAASLPEGPRTMARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQIPGFLQALNGGKVMADAEVADRLYQRALGYTHVEDDIRVCDGVIITTPTTRHYPPDTTACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA
complement(139667..140107)         hypothetical protein; BBB37_00630                                                    N/A                 BordetellapertussisMTTRKMLLDRLPADFHARLENWGEVMRSRPHYAVSPTYEVCRRLAKRAGQGAWGGEEGVRELDEGDAGLIEAAWRNSVYRMLHQHRDILRAHYVTRSYWLATCRALGLRTREYDDVLVRAVGNFEDFVARYAVVVHNPAQDRPTTV
complement(140307..141125)         hypothetical protein; BBB37_00635                                                    N/A                 BordetellapertussisMQVPQDALEGRRAEVLAIACGGYALPLEGGGVLPPPGSFACEGAPTSDPAKINIEPGDPWARPGAETPRAAAETRTTVGFDPGAGAGPAPALNVNILALDLGTKTGYALRRRDGRMVHGTEEFTPRASWAPGQKWLRFRSWLSATITEHSITQIAFEDVKRHGPGQVLAAHAYGGFRAMLEMVADQHRVALVPFGVGQIKKHWTGSGVAKKDDMLMQAKVRGFAAVDDNNADALAILHLAIAKEKREWAAPPAKSKTRRTRKAGAVAHERTA
complement(141245..141721)         hypothetical protein; BBB37_00640                                                    N/A                 BordetellapertussisMSSYAEASAAVGGNESGGYGVCAAYGCCLPGTMTASTQGGKDWHCRLHFGAPRSEFDDISARVQNRKALFLAAYWLVNRPKGDTVSRKVRDRIKALGRADLLEKVPSVRGVTAYHLGVHMLRVLGDECRQPQEHMGTPKRAGQGTTWLDQTQPEETDA
complement(141718..142473)         PHAGE_Ralsto_RSK1_NC_022915: hypothetical protein; BBB37_00645; phage(gi560186070)     1.59e-35            BordetellapertussisMHSRDVSAFAELLAGVFDAYNRLPPQPTTQLLWLRMLEPYEFPAVSAAFSQYVANEVKFPPTPAQILALLGHGTGDSRPTADEAWATALVSRDEAETVVWTLETAQAFAACRTVLDLGDEVGARMAFKGAYDRLVARARHDRQPVAWQASLGWDPDRRERALTAAGTAGLLPAPHVAALLPPPDPSGGLGDDAVAAENIARLRKLLAGALSPSEKRRRAAEQAGQAERDRLDVLKAETAAKVAQHQQGVRA
complement(142473..143264)         PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; BBB37_00650; phage(gi100022)      3.90e-19            BordetellapertussisMSYEVMKACRPLQMPSSPKAVLMALADYADEAGSAWPSIPTLCEYTCLSERTVHAAIKWLEQAKVVVADRANGRHTTYVVDANSFQQPPQQLRPRSSCTPANAAVTTAAAAVVPPQIPQSPPQQLRSNNQEQPREQPGTTNKRVRKPKDSGFDAMKVDLPDWLPAESWERWVRHRVQLKKPITEETARQQIEDLGTFRGQGHQPDDVIRHCIGKSWQGLFPPKQGFGPRPAPAVSEADRRKQEFLRLAGHGGQDNFTLDMEQA
143328..143543                     hypothetical protein; BBB37_00655                                                    N/A                 BordetellapertussisMSDNVLKDHPISSIEKALGDGLAKLLGSSVKVKISGLTFDAGDDFMFDGHMEASQLSISVNKKWDDTKLRD
complement(143545..143991)         PHAGE_Burkho_phi1026b_NC_005284: gp74; BBB37_00660; phage(gi38707964)                9.64e-25            BordetellapertussisMQRRAPLQRKTPLRTGGVRLSGGSSATPMRQATLQRAAIKRRAPKKRPGYHDPKYLAACKGECCYLRFPGCRSYPEDPTVVPAHQNEGKGMGLKVHDKFTVPACFHCHALYDQSGIDREIKRATFDWAYTRWVPVRAGKLGLQHVETL
complement(143991..144446)         PHAGE_Pseudo_YMC11/02/R656_NC_028657: putative NinB; BBB37_00665; phage(gi966197899)     1.29e-09            BordetellapertussisMRQRLLNPKTFILRSPSQQAAAQAFLANLPLDADEPLEVVVRERVKPRKMSQNALMWAGPLRDISEQAWVQGQRFAAEVWHEQFKRDYLPEEFDPELCLEGYRKWDYTPRGDRVLVGSTTGLTVKGMAQYLQQVEAAGAALGVQFGAREGQ
complement(144446..144625)         hypothetical protein; BBB37_00670                                                    N/A                 BordetellapertussisMTYDEALKIAQRAIEEAMRLHGQDFAKVYEEMRLRERQDPELERAMNIVGRFTQFSTRH
complement(144622..144999)         hypothetical protein; BBB37_00675                                                    N/A                 BordetellapertussisMQREQGVGLDFLRIRPSEPMLFIDKAEIARCVTYRQAVRLAWDMRQPRGMTMRTLAELCGMYPQHVSSYLHEDPLLPSGAPRLNLPAEKINAFEAAVGNYAVSQYLNHLGRLTIMQEVIAAQRVA
145075..145263                     hypothetical protein; BBB37_00680                                                    N/A                 BordetellapertussisMSQSTETDMTETEKLLNHAQEIARRAFDDPSEKTVMDLFDELRAERDRRAWEGSDAAGATVH
145618..146316                     hypothetical protein; BBB37_00685                                                    N/A                 BordetellapertussisMSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIGDSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAALLPGYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGRESPAQDVKHE
146309..146629                     hypothetical protein; BBB37_00690                                                    N/A                 BordetellapertussisMSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQVHGPNYSVATVQTQAMLQNNLNSIAI
146656..146667                     attR                                                                                 N/A                 GCGGCGCTGCGC
147109..147720                     PHAGE_Pseudo_F10_NC_007805: Repressor protein; BBB37_00695; phage(gi148912804)       9.90e-10            BordetellapertussisMRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
147792..147998                     hypothetical protein; BBB37_00700                                                    N/A                 BordetellapertussisMNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
complement(148250..149200)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_00705; phage(gi52430457)     1.10e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
149233..149304                     attR                                                                                 N/A                 GGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGCC
153822..153835                     attR                                                                                 N/A                 GCGGGGACAGGCAC

#### region 2 ####
complement(275979..276962)         PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; BBB37_01340; phage(gi971753894)     2.96e-11            BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHKPLARTDCPSPR
276996..277059                     attL                                                                                 N/A                 GCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACA
complement(277050..277298)         FMN-dependent NADH-azoreductase; BBB37_01345                                         N/A                 BordetellapertussisMKTLVILSSILGDRSNSKQLADHLLARLKQSEPGGMVKIRDLAADPVPYFDGATVGALFTPAEARNAQQQRIAALSDDLVVKI
277420..278343                     PHAGE_Burkho_phi1026b_NC_005284: gp58; BBB37_01350; phage(gi38707948)                1.52e-12            BordetellapertussisMQDLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAGERYLHYCQEMTASARAAEDAMRQLQSAPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVSVQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPETPQELASHRTLSFNDPQNEVRWPLTNQRGESVEVAVQPVLASNDFIVLTQAAVRGRGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYPSRRGMMPAVRAFLDFLAKRVPPLVRQSDTARP
complement(278352..278750)         hypothetical protein; BBB37_01355                                                    N/A                 BordetellapertussisMFPLLIRNLRHLLGLPVGADEPVTSLAIDEQWAVHIGCEDDMVTVLLPLGPAPDPLPGAALVNSLAQWPPVLLDLSEQGEAILWAREHVGRLTAEQLHALLVRVAARAAALMAPAAAPPAPQDTAEVAGRKA
278992..280971                     hypothetical protein; BBB37_01360                                                    N/A                 BordetellapertussisMLSNNVNPVVGLSYRPLPETPPSGQAAAHPSMRLLEPNNDEFVRSVASPRLHHSSEALREVKHDVRQFQASGDRSLQQLRDLEVALNHWEASQPREFAKRGGLVAELRTAIDAYKQQLHEQAPSHANLDVKWLDGLRAGSMALQGDVKVWMQNLEDLHTRRPDEFAARLQQSTDALYSHLEAQWAKQHGTPPTASDVAGMPQWQEYTAMLRERFAGLDTIRPNLTAEENGVAILKTQTQLLALQRAQEALQASLADGVSHQGDVGLLRTQLLAGMVEGLIALQQADDDSALWSRPSAADSGGRLSVEAGAKASTDFEAPASKGELLRGKGISGEAVLEAFANIEMSVSGSRAGAAGEAEGSLRLYGESTARAEVSGSFEPFALSGSIGREEADGDTAASANPVLSLNVSAELSSKLGLEAQGSVTLGSLLKLDAEGRAEVGASAEVSGAAAIDKRSDGLSVRLEAQAEAFAGLKAEGTLTANLLHSKYADAHGLTASVTGSAANVGLGATAEGKLVASPGQFEMGGEVGTTLGVGGNIGWNSKVDVNASTAYAYELASAAMARFDALRASQLDHDAKTSGNESQLNRLAANLQSHIDATSQKLDALNSAGVESRIRKVDGFAAGDGAQAAAGLAAQMALVETGADLSHDIKITALNLRA
complement(280997..282292)         histidine kinase; BBB37_01365                                                        N/A                 BordetellapertussisVGAKAGMRKYYRIEEIDPPWPENLPGMPREPGRALSGMPEMPRPPYWPRSNGQPVFFDAVYRNDPVRAVAVVRDLYYRNQHRQVLVVVAESIGKRVEAEASAQRQEVLRDTRMLALVALLVWWGVNWALRPLVRLRNDIRTRRPDDLTPLDATRVPSEVAPLVEAVNHHIARHRRVLDEQSQFLADASHQLRTPLAIMLTQAQYALRERDPVRAQEGLRAIVDQLGRTRCLTEQLLSLAHASQADAPPRQELDLNDVARDVVLQYLPLAHEKQQDLGWVDARGDEAEGASDTAVVPVWGSEVELHEALSNLVHNAINYAPAGAHITVSVVRYPGRAEVQVADDGPGIEPLLRARAFARFDRMAGDRHASSSGSGLGLSIARAYARRNDGDIELRDGEPNAQGGIGLCAVFWIPLYDQSAPADEAEAFRRSG
282458..283447                     PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: integrase; BBB37_01370; phage(gi971753914)     2.45e-38            BordetellapertussisMGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGESPRNLLRKCYSGTATRYPLGTRGTAGSGSGSRASKKRRIFAPSSSTPSVPRTSAHGVIAGWRRCSPSRYGVILPSCGPPGVTPGANGGTRMNPWLDLTMPPEGRHRERIYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRAVALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD
complement(283444..283644)         hypothetical protein; BBB37_01375                                                    N/A                 BordetellapertussisMEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
complement(283645..283764)         hypothetical protein; BBB37_01380                                                    N/A                 BordetellapertussisMPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE
complement(283757..284098)         PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; BBB37_01385; phage(gi985757664)     5.12e-13            BordetellapertussisMELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLTDDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGCAAHKYGGIEAATRRAIVRAAAEIGAKMQEAAHA
complement(284109..285293)         PHAGE_Acinet_Ac42_NC_014660: hypothetical protein; BBB37_01390; phage(gi311992508)     3.36e-09            BordetellapertussisMENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVADERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALDAAITALRWSAGALQALNIEADKITLDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVMTERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPLDTSPGHSAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYENRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDADIPASLVQLVAAVKGMTKLYPHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN
complement(285330..285857)         hypothetical protein; BBB37_01395                                                    N/A                 BordetellapertussisMFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEFHPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLIDRVRLKHDLKGAKVLIGFGLGGSSDIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAIEKQGALGLNLEPEAA
complement(285915..286562)         PHAGE_Pseudo_YMC11/02/R656_NC_028657: putative exonuclease; BBB37_01400; phage(gi966197818)     1.62e-35            BordetellapertussisMNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFADFVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA
complement(286559..287545)         PHAGE_Entero_phi80_NC_021190: phage recombinase-annealing protein RecT; BBB37_01405; phage(gi824479614)     3.05e-76            BordetellapertussisMNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDPAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVPTEPPPDGGKTIDEPPRDPSDDGFGRDDQGGIQE
complement(287549..287731)         hypothetical protein; BBB37_01410                                                    N/A                 BordetellapertussisMSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
complement(287728..288105)         hypothetical protein; BBB37_01415                                                    N/A                 BordetellapertussisMLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
complement(288108..288319)         hypothetical protein; BBB37_01420                                                    N/A                 BordetellapertussisVPGTGDTMETTYISDEQAVQVMAQLGGSFMKQLARLWMTADPLRRARAKRRSATTSTVTATWLHGRTRPGA
complement(288339..288818)         PHAGE_Burkho_Bcep176_NC_007497: gp36; BBB37_01425; phage(gi77864661)                 4.45e-55            BordetellapertussisMSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSERESYIKFSHAEPVALTAILASNGLDDALWALRCVPGVDRDARLFAVWCARQVEHLMTDQRSKDALDVAERFANGEATEEERAAARAAARDAAWAAQKEMFIAMCEGRAPWQQTT
288859..288924                     attL                                                                                 N/A                 TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCA
289004..289906                     PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; BBB37_01430; phage(gi971753894)     2.08e-11            BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
complement(289952..293338)         PHAGE_Synech_ACG_2014f_NC_026927: hypothetical protein; BBB37_01435; phage(gi100237)     1.14e-05            BordetellapertussisMGKGNMKQVTGYCTLCRSRCGSVNHVENGRLVAVTPLAGHPTGGALCAKGRAAPEMMAESHRLLRPLRRTNPRGAADPGWREIEWSEALDEVAARLAVARRRDGAESVAFAVTTPSGTPMVDSFEWVERFVRVFGSPNLIYAVEVCGWHKDYAHALTFGRGIGVPDLEHTDTMLLWGHNPARTWLAQAARIAAARQRGARVVVVDPNREGSSQQADLWLRVRPGADGALALGAIRHLLHTGRFDHDFVARWSNGPYLVDGASGALLRAVDLWPDADPAARVVMQDGSPAASGRGADTARAELFGSWTLRLHDGRACEAVTVMHALRVAVERYTPDEVARLAWLDEAELAQFNAIFENAPRLSYHSWTGVGQYTNATQTDRAIATLYALTGACDRKGGNLWTVAPPYRAVNGYRELLSPVQRAKALGLDELPLGPPSLGWITARDFCRAVLQQDPYPVRTLVSFGSNLLVSQAETARNLEALQALDFHVHVDMSMNPTAMNADIVLPANMPWEREALKLGFEITQAAVEHVQLRPRMVEPAGESRADYEIVLELARRLGLRDAFFGADMDACWNHQLAPLGIDVQALRRQPEGIRFPQPFVHEKYKAVRDGQPVGFPTQDGRVQIHCAALRDIGQPALPVHVEPADTPARHAGAYPLVMSTAKSGWFVHSSHRYVASLRRKSPEPQVYLSVQAARARGIASGDWVRVRTPYGEVALRAKINADLHENVAIAEFGWWQGCEGLGRVDGAIVGPASSNINAIMTDRHRDPVSGSVPLRATVCDIVRDDARNRGSWSGAREFVLAQKRGIAHDVAEFRLLPCDAQALPDFLPGQHVIVSMPGGAARRAYSLTGPNREPAHLSIAVRRVRDGDGPAGVMSNALHELAEGARVLLSAPAGVFTPPLRTARPVILMASGIGITPFHGYLEALAQDAGPAPSVLLVHACRDGSSHPYGAELKRLAQRIGSVCTLTVYAEPASDDAPGRDYQQRGRLDFAWLPPATVAARPLVYLCGSPGFLAFCTDALAARGIPRFDIFSETFTSEKRVPATLAPQPIEIEAEQGGFTWDPSAGTLLDAAERAGLSLPSGCRVGQCESCAMHIVSGQVAHLIDFDGSADTCLTCQAVPITPLTLRR
complement(293480..293884)         hypothetical protein; BBB37_01440                                                    N/A                 BordetellapertussisMSARNVVFPAGRQALYDRNRYSPAIRSNGFLFVSGQVGSQEDGSPKQGLQEQVRQAFDNLNAILAAAGCSFEDVVDVTVFMVDPQSRFEQIWEVVPEYWGQAPHPTLTAVGVTWLYGFDFEIKVIAKLPRAGEG
294028..295014                     PHAGE_Burkho_phi1026b_NC_005284: gp58; BBB37_01445; phage(gi38707948)                2.07e-07            BordetellapertussisMDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGAAYYERVQQLLADLEDAETSLSGASATPRGRLRVDVPSPFASTILVPALPAFQARYPDILLHLGVSDREVDLIDENVDCVIRGGQISNLSLAARHVGDLQLGVYAAPGYLARAGVPAHPGELQDARHRIVGFSWSRARRLFPCAMQRADERIEVAGRHALLLDEGNAYLAAGLAGMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRAFIDWIVELMARHAPVTDAPPPRRSARLPGGPDAAPPDITGA
complement(295001..295282)         hypothetical protein; BBB37_01450                                                    N/A                 BordetellapertussisMPDAPVLAEVSEIKGFDMVAWVGLMAPKGTPEDRLERINQALLESLRASDVASQFVTLGIDPYPASRQEARKVLAVENQRVSEMIQRLGITPQ
295369..295599                     hypothetical protein; BBB37_01455                                                    N/A                 BordetellapertussisMNETCPLRTSVSAAALPLYGMCWALMPALSMKTSAVRCPMDPLPDEANVYFSGLLRSRSINSCALLAGKLDEVTST
295669..295893                     hypothetical protein; BBB37_01460                                                    N/A                 BordetellapertussisMTVTEPDEPASKVYPSASDLATAVAPMVPPAPALFSTINGWPSAAASFSPAARAATSVAWPGVHGTMMRTGLSG
complement(296028..297260)         mesaconyl-CoA isomerase; BBB37_01465                                                 N/A                 BordetellapertussisMNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMTGGGIDYERMPRMPGGTSLYWTGLNKQKRSVALDLRKPEGRDLARKLVCAPGPDAGILLTNIGVSWLSHAALAEGRPDVITCTIEGNADGSSAVDYTVNCATGYPHATGDGREPVNSPLPAWDACCGYQAAMAVVSVVLRRRQTGQGAELRLALSDVAFALMSHLGTLAQAELLGEDREPLGNHLYGAFGRDFVTRDGNRVMVAAISKGQWQSLVRTCGLAEAVAAIEARTGAKLAEEAQRFAHRDAIAAACEPWFRARMLAQVRTALDAGGVCWGLYQTATQMLARDGRAGSANPLFERIATAGAGEHWALGTSVREPRAMRRPTQGASRLGQHTDQVLGELLGLSARQLSDLHAAGVVAGPSGDPRGAH
complement(297260..297754)         dehydratase; BBB37_01470                                                             N/A                 BordetellapertussisMSMDAKSMLLARGRLLEDFKTGDQYAHWPGRTITEADNIQFSLLTMNRHPTHCDHHYASQTEFGKPLVNSGLTLAIVLGMSVDDISANAVANLGWQEIELLAPVHPGDTVYARSEVLSVRESKSRPGQGVVTVRTEGVRADGVVFMRFVRSCLVPSRASLAGAR
297886..298848                     PHAGE_Burkho_phi1026b_NC_005284: gp58; BBB37_01475; phage(gi38707948)                5.26e-06            BordetellapertussisMGKEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTGQIKQLEAQLGVDLFHRTTRQVRLTAEGAQLLESARRAVHEMENGLRQIQETVDLKRGRIFLSCSTTVSSTRLAPILAAFERDYPGVEVFVRELTSGDMFETVRREQADFGIGPIMELPEFDFEPILTENLYAVVPRNLFPDTAEQITLARLASMPLLLLNPGTALRALIDNTARSRGLTINAKFQFSQAQTLISMATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVRLRHRKLTPAAARLAQLVRDLIHGPLGRRTARATTRRPSA
complement(298826..300079)         carnitine dehydratase; BBB37_01480                                                   N/A                 BordetellapertussisMQSFYQEPAVAADLKEAPHPPKALSGLRVLDIATFLAAPFCGTIMADFGADVIKIEQPRGGDSLRKFGTPSPCGDTYMWMSEARNKRFVTLDLRTPEGAALFKELVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLRVSAYGQDGPKREEPGFARIAHAFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLMALQARNHTGLGQVVDIGLYESVFRLLDELAPVYAATGFVRRRLGADVPNVAPHSHYQTRCGQWVAIACSNDRMFERLASAMGAPGLAGDARFATAAARAENRQAINALVAAWSARFDLQALLDLCRNEGVPCSKVYSIEDIFQDEQYRARGNLMEVDDPRIGKTVLPASVPRLSGTPARFLRAGGALGQDNAGVYEELLGVCGERLAALRQTGVV
300104..300169                     attR                                                                                 N/A                 TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAATCGCCA
300201..301151                     PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: transposase; BBB37_01485; phage(gi971753894)     2.65e-11            BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
312859..312922                     attR                                                                                 N/A                 GCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACA

#### region 3 ####
3495512..3495524                   attL                                                                                 N/A                 GGTGCCTGTCCCC
3495512..3495524                   attL                                                                                 N/A                 GGTGCCTGTCCCC
3507856..3508806                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16590; phage(gi52430457)     3.36e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
3508851..3508864                   attL                                                                                 N/A                 TGGGCAAGGACGGG
complement(3509251..3509562)       cell division protein ZapA; BBB37_16600                                              N/A                 BordetellapertussisMERVDVTILGRDYSLACSAEEKPVLMAAVRHVDQLMLRIQGSGKVSSNERIAVMAALQVAGELLAMKAPDGPLGGLAVGDFKRRIEEMNLMLDDALSGQEKLL
complement(3509562..3510092)       hypothetical protein; BBB37_16605                                                    N/A                 BordetellapertussisMQVLPNIAVFLSLREEARSVPGWFTIAPMLQDLDQLAARIGQLVQRTRHLHAERDALRVRLNDSESEQRKLKQRCADFETELQALQARLREHDGATATQLAEAQQTEVALREQLAREAAERQALESRVSAREAELQGNLRARDTDLQRLRVAASTARERIDAVLARLPGAPAGEQP
3510303..3511205                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16610; phage(gi52430457)     7.41e-105           BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
3511495..3511959                   tricarboxylate transporter; BBB37_16615                                              N/A                 BordetellapertussisMQLRNRQDFWSGVMFIVLGLGFSWQASSYQMGTAARMGPGYFPFWLGLVLALLGAIVLISALSKKATETAVEGFDWRIVFLVVGSVVLYALILKPLGVYLSVFILVVVSSLASHEFSWKVAVANGIFLVVFSYLAFIKGLGLIFPLWPSFLGMN
3511974..3513479                   hypothetical protein; BBB37_16620                                                    N/A                 BordetellapertussisMELFDNLMLGFSVAFTPENLAYALLGCILGTLIGVLPGIGPVPTIAMLLPITYVLPPVAGLIMLAGIYYGAQYGGSTTTILVALPGETSAVVTVLDGHQMARNGRAGAALAIAALGSFFAGCVATLLLAAFAPPLAEVSFKFGPAEYFSLMVLGLVGAVVLASGSLPKAIAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEIMTNLEQKENRVDITDKIGSLYPNFQEFKEAAPAVVRGTALGSALGILPGGGAVLSSFASYTLEKKISKNPERFGKGHPAGLAGPESANNAAAQTSFIPLLTLGIPGNAVMALMVGAMTIHNIQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLIGLWVKLLKVPYRILFPAILVFCTIGVYSLNYNTFDIFMTAAFGVVGYVWAKLKCEGAPLLLGLVLGPMMEENFRRALLLSRGDFSTFVTRPLSATLLAVALFLVVLVALPAIRKKREETFVEEE
3513736..3515340                   gamma-glutamyltransferase; BBB37_16625                                               N/A                 BordetellapertussisMKFDWNNPYPSTRIPVFARNVVATSHPLAAQAGLRILALGGNAADAAVASAATLALVEPASNGLGSDCFALVWDGARLHGLNASGTAPAAWSPGYFQRKHQGAIPLRGWDSVTIPGCVAGWASLHDKLGSLPFADVLAPAIEYAERGFAVPPTVQRRWADQVDPLRSLPGFAEHFLPHGRAPEVGEHFVLAGAAATLRRIAASGGRDFYEGETAQKLVAHAQAHEAALTLGDLRDYAPQWVEPISQAYRGHALHQLPPNGQGLAALIALGIVEHFDLASRPAEHPDTQHILIEAMKLAFADVHAHVADAAHIRIRVEQLLDPAYLAERARLIDLRRARVYNAAQAPQGGTVYLACADRNGMMVSFTQSNYMGFGSGIVVPGTGISLQNRGCCFSMDPDHPNVVGGGKRPFHTGIPAFLTQDGAPLMSFGIMGGNMQPQGHLQALVRMLDYRQQPQAACDAPRWKWNRGLSVDIEAAMPAQVTDALRARGHIVEVAAPADKDFGSGQFIWRLGDPAVDGYVAASDSRRDGLAAGF
3515396..3516301                   PHAGE_Synech_S_SM2_NC_015279: 6-phosphogluconate dehydrogenase; BBB37_16630; phage(gi326781984)     2.19e-07            BordetellapertussisMATIGSKTYDTTTPRNVAFLGLGVMGLPMAGHLARAGHQVTVYNRTAAKAQAWAAEFGGKAAATPREAAAGAQIVFCCVGNDDDLRSVVLGADGAFAGMQAGAVFVDHTTASADVARELYAAARELNLQFIDAPVSGGQAGAVNGALTIMCGGDSATFEDIKPVAHAFGRAVTLVGPPGAGQLAKMVNQVCIAGVVQGLSEAIAFGQTAGLDMKLVLDVISKGAAQSWQMENRGATMVDDQFDFGFAVDWMRKDLGLVLAEARNNGARLPLTALVDQFYGDVQKMGGNRWDTSSLIKRLRD
3516329..3516340                   attL                                                                                 N/A                 GGGCGGCCGGCG
complement(3516350..3516745)       FMN-dependent NADH-azoreductase; BBB37_16635                                         N/A                 BordetellapertussisLVAELFDADRIVFAVPVYNFNLPAQFKSYIDHIARAGVTFRYTAEGKPEGLVQGKQVLVLIARGGKSEGTPDDTMTPYLKQMLAFLGMTDVTFIAAEGMAMGELAAQEGLALARQRIDALSLDARQGLAAA
complement(3516742..3517644)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16640; phage(gi52430457)     3.38e-104           BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3517784..3517795                   attL                                                                                 N/A                 TTCACAGCTAGC
3517831..3518583                   PHAGE_Flavob_Fpv3_NC_031904: recombination endonuclease subunit; BBB37_16645; phage(gi100056)     1.05e-31            BordetellapertussisMPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQRLAEGAVVYPAAPFRALDQLAPADVRVVILGQDPYHGPGQAQGLAFSVPDDCKCPPSLRNIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALIAEVARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTNAWLQQRGQKPVDWSGEQNNASRQGEFAL
3518858..3520546                   PHAGE_Strept_YMC_2011_NC_018285: Helicase; BBB37_16650; phage(gi399498700)           1.70e-06            BordetellapertussisMSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPGNKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPRPSTGGPRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRPQRDFGDRPQRDASDRPQRSFGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRSFGDRPQRDVGDRPQRDFGDRPQRSFGDHPQREGGWHGAPREGRSFDKRPGGPAKRFAKPAAPRRG
3520635..3521825                   hypothetical protein; BBB37_16655                                                    N/A                 BordetellapertussisMQRPASSSLPPLDPAASAHSASVARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYTAGATKLASPADAQGPALPAGDFVTAPELTPLFAATVARQVAQVLRATDTASVLEFGAGTGALAEGVLRALAGMDCPARYLIVEVSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGTVQERGVTVDADGAFAWQDRDADAPLAQAVAQRMPPLPGYVSEINLQAEAWVRGMGLWLQRGAALLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFVAPGLQDITSHVDFTAMADAALAGGLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAVGRDMPEPLLGFARGDRRGTL
complement(3521840..3522934)       PHAGE_Sinorh_phiN3_NC_028945: tRNA nucleotidyltransferase; BBB37_16660; phage(gi971759164)     1.10e-60            BordetellapertussisMSRTDDPGVAGLRVYIVGGAVRDDLLGLPAGDRDWVVVGATPEDMARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNVIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDDTAVRAEIDRAAAAGLPLAGRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALAASATPAAQLDLIERCDALRKPERFDALLQAAAIVAPVDLSAWRARVQAVRAIDAGAIARQCAGDPARIKPALRQARLQALGGA
complement(3522931..3524994)       PHAGE_Pseudo_AF_NC_019923: putative structural lysozyme; BBB37_16665; phage(gi431810307)     3.41e-16            BordetellapertussisMRGWLPVLALFTAACAPVDAQQRAAASTAPAAVPMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRKQWSVLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGDWIQAAARAGDFETVRRLGPVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWALYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYIFEPKDQKSYDQMMKNPMKWLVRQDKSPVGRNEKELVTLALARLNKPDVSVADSYLRREWSRHLPRQNLAWVRSQYALVAVLNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPVWVYWKARGQAALGRAQQASQAYASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIAEARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAAELARAEGIYDRVVNTSERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLMQLMPATAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAGPGRPRNWRASFGHPVEGAIFAETIPFNETRLYVKNVMSNAVYYAAMFSGQPQSLKERLGSIVPPQAALATNQR
3525070..3525750                   5-formyltetrahydrofolate cyclo-ligase; BBB37_16670                                   N/A                 BordetellapertussisMHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWLNLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQWVESGIAVCLPAVQERDAPLVFRDWTPDSAMRTGAYGVQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAWQAAGASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSRFLLR
3526061..3527401                   PHAGE_Burkho_phi1026b_NC_005284: gp59; BBB37_16675; phage(gi38707949)                3.88e-45            BordetellapertussisMQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYATAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLARPLGGAVFGHIGDRIGRKKSLVITLLLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDRSKRTFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSVNESPDFLAEQAEKARLKDAAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTNTFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYIATRIGSRRFLLITSFLSIFTPYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSGAIFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAMTAPLRSA
3527403..3528422                   PHAGE_Rhodoc_E3_NC_021347: putative histone deacetylase protein; BBB37_16680; phage(gi509142389)     2.36e-06            BordetellapertussisMKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKFDVREPVDAGAGAIGAVHSLDYLRFLREAHARWKQLPDDWGDEVVSNVFVREPNALRGVLAQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARRDAAGGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFYPVVAGFENERGAGEGYGYNVNLPMPHGSPEPVFFDRLQQAQRAIELFQPDALVLSLGFDVFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGYYIEGLEDNAERFFAGLAKA
3528486..3529457                   LysR family transcriptional regulator; BBB37_16685                                   N/A                 BordetellapertussisMSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHLSQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGEEIYRLAREMYGMVARVEEAAIQDEDDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFSVDVMQSAAILDALAKRVPALGLCLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLSPLTIFRDQQGFTGRIVGTSPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEHNVAEIDVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEMRAR
complement(3529522..3530424)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16690; phage(gi52430457)     1.60e-103           BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQTGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
3530560..3530574                   attL                                                                                 N/A                 AATCTTCACAGCTAG
complement(3530571..3531131)       ATP:cob(I)alamin adenosyltransferase; BBB37_16695                                    N/A                 BordetellapertussisMANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSVLGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPGHIALADEQVAHLDARLAHYNAGLAPLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLFVLARHVNQAQGARDVYWASRHARPAD
3531217..3531228                   attL                                                                                 N/A                 GCGCCGGCTTCA
3531556..3531861                   RND transporter; BBB37_16700                                                         N/A                 BordetellapertussisMAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAAGKVSIKHDAISALDLPAMTLVYQIDPALLAGIKPGDKVRFTATRKDGRYVVTAISK
complement(3531875..3533209)       PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; BBB37_16705; phage(gi15834112)     0.0                 BordetellapertussisMSANHMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL
3533389..3534291                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16710; phage(gi52430457)     3.38e-104           BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
complement(3534271..3534819)       PROPHAGE_Escher_Sakai: ATP-dependent protease peptidase subunit; BBB37_16715; phage(gi15834113)     8.24e-80            BordetellapertussisMEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTVRKIRRLYHDKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVADTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEIAGDLCIYTNQNHVIETLGVNCQ
complement(3534967..3535431)       RNA polymerase-binding protein DksA; BBB37_16720                                     N/A                 BordetellapertussisMATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFKERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQAIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD
complement(3535574..3536683)       cobalamin biosynthesis protein CobW; BBB37_16725                                     N/A                 BordetellapertussisMNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIENEFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGDLMRTLSDLRARREAGELSFERVIIETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQEEAQKQVGFADRILVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPAFLADEHPDAAHDHHDHDHGHGHDHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFRSNKPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINRRMLFQGVHMMMGAEPGKAWTAAEKPSTKMVFIGRKLPQEIFTRGLEQCLVG
complement(3536960..3537463)       transcriptional repressor; BBB37_16730                                               N/A                 BordetellapertussisMSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLLVHGRSLKAYELLEAMRAEHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWSACHDAAGEPHDLLVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPAQAHGHTHSHH
3537601..3537801                   hypothetical protein; BBB37_16735                                                    N/A                 BordetellapertussisMRHPARTHRALPVSLSRLSRFYTPLRRGPRPPHSVLRAGAGARLAAAVLAAAGLWGLTLWALGAWP
3537792..3538514                   PHAGE_Bacill_G_NC_023719: gp245; BBB37_16740; phage(gi593777701)                     1.04e-17            BordetellapertussisMAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAGKSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQASELERGFPITVADMVALGAWGRVGAWRRFDAAETARVHAALRRVGLQELAGRALATLSGGQMQRALFARLLLQDAPLLLLDEPFSAIDAATTDVLLALLREQHAEGRTVIAVLHDLDLVRRHFPRTLLLAGRQVAWGETGQALGDANLARARGLAMREAA
3538511..3539407                   zinc ABC transporter permease; BBB37_16745                                           N/A                 BordetellapertussisMTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSLMGDAMAHAILPGVAAGYLLSGLSLGAMMAGGLLTGLAVALLAGLVARLTPLREDASFASFYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVANATLCILALAYRLLVAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWAGSAPGQIALAAVSACAASAVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVAARRARRARPWQPEGDLP
3539404..3540339                   ABC transporter substrate-binding protein; BBB37_16750                               N/A                 BordetellapertussisMKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDVAVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNGLDFEAWLPRLQKAAGFAGRTVVASEGIEPRRLDDAHEEHGDHDHGHHGEHGHHHHGDLDPHAWQDLANGATYARNIARAFAEADPAHAQAYRQRADAYVARIEALDQRVRQLFGAIEPARRKVVSSHDAFGYFGQAYGVRFVALAGVSTDAEPSAADMARIIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYSDALAQPGKPAGTYLGMFEWNAQQLAAALRP
3540300..3540968                   hypothetical protein; BBB37_16755                                                    N/A                 BordetellapertussisMERAATRRRLAALTALGALWAAGAGAHPHMWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSRKPGGGLPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTLPFGPPRDAAVSFEDGRLTLAFTLPLAEPAPAGGATAVDIYDPTYFVAYAFDEVGATALRGAPAGCSQAYRPPRPLDWATMQQLAAIPADPEALPEELFAITKGLTHRIEVTCP
3540959..3541927                   nickel transporter; BBB37_16760                                                      N/A                 BordetellapertussisMSVVRAGALAVLVLGCLAALPAAAQGAHPFGVPEATGAPGWLAGWFGQVAMWQAHFYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHALGPGHGKAVIASYVLANRQTARNGAWLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSLLGAWLVWQKALRPWWGSKGGHGHGHHAHHHAPGCACGHAHAPSARQAAGPLNARKAWAAILAVGLRPCSGALIVLVFALAQGFFLAGVVATLAMGLGTGLTVATLVALAAGARDAATRLGARLSTRRAAMLRQAIEALAAVAVLLLGLSLLGGQLAALR
3541976..3544117                   TonB-dependent receptor; BBB37_16765                                                 N/A                 BordetellapertussisMICYIVSFNENGTSFYREGNMRFERHPLSAALALALAWQGAHAQASADGTPEAATLAPITVSASPLAGDLDSMTAPAAVLEGDQLLLRRQGTLGDTLDGLPGVHADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLRGPATLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAVRVEGLKRRSSDYRVPDWPDGKLAGSYSESGQGTVGMSWITLRGYVGVAFTHLESKYGLPGHNHEYEGCHPHGSHLHCGGHDDHGHGHDEHEEGEAEHDHGHEHGAGDVPYVKLRSNRTDLRAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWHGVVGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRFELGARQDWQRVSPQSGAPASRTAGTSLSAAAIWDFAPQYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDPGLDRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDRYEDFRLIEYTQRDAEFTGVEGEVRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVEYFHVYRQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFISTVAPLPGRSVLLGVRLTY
complement(3544130..3545110)       PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; BBB37_16770; phage(gi100018)     3.32e-16            BordetellapertussisMSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTSR
complement(3545125..3545817)       hypothetical protein; BBB37_16775                                                    N/A                 BordetellapertussisMTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSRAISLGERQIQTLRERTRELEWRLSELIRNANSNETIGDHLSQWCCRMLAEADAQHVPGEIALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFEAVSWLDAKPKSLALVALRPDADAPTFGLLVLGSDDAERFAPDMGTAFLEAIGKLASAALRRLGTPPLAAA
complement(3545844..3546755)       diaminopimelate epimerase; BBB37_16780                                               N/A                 BordetellapertussisMGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGPAISVFSGQVDIDRLVFTSGLHR
complement(3546798..3547688)       acyltransferase; BBB37_16785                                                         N/A                 BordetellapertussisMSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRIVRRNLELCFPGQPEAVRERWTREHFRALGQSIVDRGVLWYGSPEAVREMVTQTGAERINALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARFNEVFLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSIFVPFFGVPAATLLATAQLARKWNAAVLPILDFWDPRTGRYHVEVLPELPDFPGDGSLEDATTRLNRELESWVLRCPSQYYWVHRRFKTRPLGEPKLY
complement(3547685..3548539)       lipid A biosynthesis lauroyl acyltransferase; BBB37_16790                            N/A                 BordetellapertussisMLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQAGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLGKVVSDDYAIVEAARAEGRGILFLTPHLGCFKITARYLARQMPMTVMFRPPRKAALAPVLETARNTSAVNAVPATMQGVRTLRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGGRGWRIHYARVPEPLPDGPQEQAALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDSARQEPER
3548788..3548799                   attR                                                                                 N/A                 GCGCCGGCTTCA
3548823..3549986                   methionine adenosyltransferase; BBB37_16795                                          N/A                 BordetellapertussisMANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRPIYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA
3550097..3550348                   hypothetical protein; BBB37_16800                                                    N/A                 BordetellapertussisMTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICRGCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRRNNY
3550428..3551468                   alpha-mannosyltransferase; BBB37_16805                                               N/A                 BordetellapertussisMRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRTVPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIATEGPLGLAARRMALRRGWRFTTSFHTMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSRGVDARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRKFPAAHFAGPQADDRLAAYYNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAVVQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDAVARDLLAAFTPLVEAPLALPPAAQRI
3551748..3553166                   adenosylhomocysteinase; BBB37_16810                                                  N/A                 BordetellapertussisMNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAKPGSEEERVLFAAIKETLGRDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALVALRAQVWVTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNYHVITRQHMEAMKDQAIVCNIGHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGVKLSTLSKQQADYIGVPVEGPFKPDHYRY
3553237..3553572                   hypothetical protein; BBB37_16815                                                    N/A                 BordetellapertussisMALILVWILNAVALLAVAYLLHGITVASFGSALVAALVLGLLNMLVKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSVLRGFQVNGFWWAVAGAILYSIIAGLLTKLIP
3553572..3554414                   methylenetetrahydrofolate reductase [NAD(P)H]; BBB37_16820                           N/A                 BordetellapertussisMTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFGAGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRDQLRDILAAYREQGVRRLVALRGDLPSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNKVQAGADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRWIRLRLAEYGDDKASIRAFGLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA
3554513..3555463                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16825; phage(gi52430457)     3.36e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
3555557..3556456                   ABC transporter; BBB37_16830                                                         N/A                 BordetellapertussisMKISTVFFAALVGVAASAPAHAEGRLDKIKSSGTITIGHRDASIPFSYLDDKQKPIGYSMEICEKAVEAIKAKLGMAQIKVNLVPVTSSTRIPLVANGTVDLVCGSATNTVERQQQVAFAPTTFVTATRFAAKKSSNLKKLDDMKGKTVVSTAGTSNIRWLTQANEKDSLDMRIIPTKDHPAAMLTVANGRAAAFFMDDVLLAGLVATERKPDEWMISEDTYTVEPYALILPKDDPAFKKVVDDTVTGMMRDGSLAKLYKKWFESPIPPRNVNLHLPMSAALQRVIANPTDSADPATYR
3556536..3557297                   glutamate ABC transporter permease; BBB37_16835                                      N/A                 BordetellapertussisMNYNWNWHIFLEMSPTGGIYLGTLLTGMAWTLGTAALAWILALGIGIVVGVARTTQSKWARILGATYVEFFRNIPLLVQMFLWYFVVPEILPVQLGDAIKSIPPPWGIFIPAVLCLGFYTSSRVAEQVRAGIESRPARQRMAATALGMRPSQVYRYVLLPTSFRIILPPLTSELLNLIKNTSVAFTIGLLELVGAARSMQEFSFQVFEAFAGATLCYFLLNLIVLRAMRYIETRLAVPGFIGPVSATTKLAPT
3557294..3557983                   amino acid ABC transporter permease; BBB37_16840                                     N/A                 BordetellapertussisMNEFDFDVIGRSLGYLFRDGMVFTLKLTFLSTAMGLALGTLLAMCRLSGIKPLSAVAAAYVNGLRALPLILVIFWFYFLVPYIGGWLTGAGRPLQVGGFTSALITFTLFEAAYFCEIMRAGIQSIPRGQTSAAYAIGLNYWQTMAYVVLPQALRNMAPVLLTQTIVLFQDTSLVYVLSLTDFLGAGINVAQRDNRLVEMYLFVAAVYFVMSFAASRFVHYLQQRNTMAA
3558008..3558598                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; BBB37_16845; phage(gi371496158)      1.07e-28            BordetellapertussisMIEIKNVSKWYGATQVLNDCVTSVASGEVVVVCGPSGSGKSTLIKTVNGLEAFQKGEIIVDGVSVGAHAIALLERVGLQAHQHKYPGQLSGGQQQRVAIARALAMQPIAMLFDEPTSALDPEMVNEVLDVMIDLAREGMTMMVVTHEMGFARKVADRVIFMDAGSIVEDCRNDDFFQNMDQRSPRARHFLSKIISH
3558604..3559338                   glutamate racemase; BBB37_16850                                                      N/A                 BordetellapertussisMPSDDDKQFEGRFLGVLGGMGPMAGASFMQRLVALTEAACDQQHVPAILWNDPRVPDRPAGQSGQGADPLPWMRHGIRRLEQAGATAIAIPCNTAHVWYPQLAQSASVPVLHIVEAVLDDLRRQGIHAGRVGLLATATTLRLGLYQHEMLAQGYEPVVPPVDLIDGLCAQSIRLVKQNLLPQALPPALACIDSLRAMGVDAIVLGCTELPLALPHALRAELGVAMTDSIDALALAGLGWYRRGG
complement(3559396..3560460)       porin; BBB37_16855                                                                   N/A                 BordetellapertussisMKRLIPAVALAGMFVGTAHAETSVTLYGIADVSVRYLSTGNDNGNSRVSMENGAISNSRWGLRGVEDLGDGMKAFFRLESGFNVQNGERSDPDSFFNRHAYVGLDGGEIGAISLGRQDTPLFTILADSYDPLTVGNYAQNSWLPVAMSRARSSNSVRYRNDKLAGFDMILSYAFSDSFEDHKLGEQYGGTLSYTTGPFSIGGGYMLTHSASNSDYQQRVWNLNASYKFETAKVFIGYFNGRDETGFVNAVMGNTSLPDSGLERKDNGYFAGVTWQATPRWALTGAAYYDTSKNLVEEGDKGKRYALVGVAEYALSKRTQVYGTIDYNKVKDAATGEIQGDDKQIGAAVGIRHIF
complement(3560572..3561828)       muropeptide transporter AmpG; BBB37_16860                                            N/A                 BordetellapertussisMTAATETTKVYTNRRVAPLLVLGFASGLPLALSSGTLQAWATVENVSLQSIGFLTLAGTAYTLKFLWAPLIDRYVPPFLGRRRGWMLLTQVLLAAAIMVMGMLSPGSALLPLALVAVLVAFLSASQDIAFDAYSTDVLRQEERGAGAAMRVMGYRLAMIVSGGLALIVADRWLGWGNTYVLMGGLMLACALGTLWAPEPERPANPPRDLGAAVVEPFREFFSRRGAIDMLLLIVLYKLGDAFAGALSTTFLLRGAGFSATEVGTVNKVLGLAATIVGALAGGSIMTRWGLYRSLMAFGLLQAVSNLGYWLIAVSPKNLYLMGLAVGVENLCGGLGTASFVALLMAMCRQQFSATQFALLSALAAVGRTYLAGPLTPVLVEWLDWPGFFIVTVLIALPGLWLLRLRRNVIDELDAQTAR
complement(3561871..3562821)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16865; phage(gi52430457)     5.25e-113           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3562909..3562923                   attR                                                                                 N/A                 AATCTTCACAGCTAG
3562913..3562924                   attR                                                                                 N/A                 TTCACAGCTAGC
complement(3562957..3563571)       methionine biosynthesis protein MetW; BBB37_16870                                    N/A                 BordetellapertussisMSPVSARFEPAALRPDLARIAGWIEPGSRVLDLGCGDGALLAYLRDHRQVRGAGVEIDDNYVIACVQRGVEVIQQNLEDGLALFDDQQFDTVVLSQTLQSMHRTEHILREMARVARHGVVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTLRDFEDLAGTLGLRILQRATFNEGREVRVFPSWRSTLALYRFAAS
complement(3563568..3564815)       homoserine O-acetyltransferase; BBB37_16875                                          N/A                 BordetellapertussisMTNPVLNPALPAMAAAPVAATPSAVGSAGIVAPVFLRFDEPLPLASGQTLNGYELAIETYGTLNAQRTNAVLVCHALNASHHVAGVSADNPKDVGWWDNMVGPGKPVDTNRYFVIGVNNLGSCFGSTGPASINPATGRPWGAAFPVLTVEDWVRAQARVADHFGIERFAAVMGGSLGGMQALSWAITCPQRVANCVVVASTPRLSAQNIGFNEVARRAIITDPDFHGGDYYAHGTVPGRGLSVARMIGHITYLSDDDMAEKFGRTRREPAADGAYRYGYDVEFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARATGGDLARALAPATADFLLVSFSTDWRFPPERSREMVRALLKNGSPVTYAEIDAPHGHDAFLLDDARYHAVVRGYYERIARELGLNGAVAPEGNSA
3565422..3565433                   attR                                                                                 N/A                 GGGCGGCCGGCG
complement(3565888..3566553)       hypothetical protein; BBB37_16880                                                    N/A                 BordetellapertussisMLAVVQFYWSAVVLLLPLLACAGIGAYWAKRDYPFGGTFITMLVTTVTTPALVFHTFVTTQLDDRALLAIAGASLLALLACALACAGLLRLFGLPVRTLLPTAFVPNAGNLGLPVSQLAFGDAGLSAAVAFFAVNSFVTHTIAVRMLPGANTPGSWKSPVLLASVAAVTLRALDIPVPDWLVATSRMLGAVTVPLMLLSLGHALALIPANGMRAGAVVAALR
3566660..3566673                   attR                                                                                 N/A                 TGGGCAAGGACGGG
3566681..3566917                   PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; BBB37_16885; phage(gi100010)      1.03e-06            BordetellapertussisMPQRTTLTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANACAKLGVANRRAAVAHAVQCGLLPALTAAAPPHR
complement(3566889..3567413)       hypothetical protein; BBB37_16890                                                    N/A                 BordetellapertussisMLKKRVRILWQAGCAALLLAACSPSYNWREIDVADGRVRAAFPGRVQTDTRDLALAEVPLRFSLTSARVEQAVFAIGHAPLPPEVAADPARRRALGEALARSLYANLGVQPPDPLPAPGADIEIHAPPGERDDWLLARVWATDDMLIEAVAAGTRQTLPAERAREFIDAVELRR
3567475..3568024                   PHAGE_Mycoba_Severus_NC_021307: hydrolase; BBB37_16895; phage(gi508179880)           2.08e-05            BordetellapertussisLSPISFTPAADGVSLANYAWPAAPGVAAPLPGPGTPSIYLLHGLSEHAGRYERLAGWLAARGWRVGAHDHRGHGRSGGPPGRPGPTRRPGARRHAAAAGLEPRLRTPAHPAWPQPGRAGGGAVGAAAMGAAGRPGAQFAAVSPAHPGLVAPGADLAGAPPARTARAARPGAGLHFAPRGRGRC
complement(3568024..3568851)       PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16900; phage(gi52430457)     1.74e-98            BordetellapertussisVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3569117..3570028                   reductase; BBB37_16905                                                               N/A                 BordetellapertussisMAAHCQEPCMGTPVRYIDKTRDYYLPQGYEKPYQWAQYDDVPFTPLGKPLSECRVTLISTSEISIVGDTHPEDETRMGIVGGTYTIPSSLPASQLYSPSRSFDQAATTLEDVDAFFPTTHLHAAAQAGRIGGVTQRFHGVFNAYSQRRTRERDAPLVLERCKEDGADVAILVPVCPVCHQTISLVSRHLEANGIPTVILAAARDIVEHVGVARVVHTDFPLGNPCGEPGNAAQQREILEYGFQLLERAFLPRTTVQSPMRWSAGEAWKDLVFTPEQPWKSGETEQDWLRKKELYKKLKQEGKV
3570025..3570273                   PHAGE_Gordon_Soups_NC_030698: prohead core protein protease; BBB37_16910; phage(gi100061)     1.84e-08            BordetellapertussisMNMAHDIVVYATPFCAPCERLKKFLQEKQVPFRSVDLMMDEEAAEKLEDLGIRSSPVLEVDGRYYHGGQLQPDTLAALLGLP
3570270..3571475                   acetyl-CoA acetyltransferase; BBB37_16915                                            N/A                 BordetellapertussisMKGPLDGVRIVDLTTVLMGPFATQMLGDMGADVIKIEAPHGDVSRQIWPYRHPGMGHMFMNVNRNKRSVVLDLKHAEARKALFALLAGADALIYNIRPRAMARIGLSYDEVARHNPRLLYVGAFGYSQRGPYAAKPAYEDLIQGAVGLPHLFQRQGSQWPHYAPINLADRTVGLQIVNAVCAGLFCRERTGQGQRIDVPMFEAMLALVMGEHLGGAGFEPPVDGLGYNRILTADRRPFATRDGHICVLIYNDKQWQGFCRLIGRPELAADPRYATAASRSQQYSEINGLLASEFAQRDTQDWIAAFEAADIPVQKMNDLQDILDDPHLNAIDYFQEHPHPTEGTIRTTAPPVEWSGTPGGYRRHAPRLGEHTLEVLREAGIGQGDIDALLASGAARCAVSG
3571487..3571499                   attR                                                                                 N/A                 GGTGCCTGTCCCC
complement(3571548..3572543)       hypothetical protein; BBB37_16920                                                    N/A                 BordetellapertussisMSRILQKIYATTAHLGLAAALGLSCTASTAAPANPQGRAVQLVIPFAPGGVTDLIARLIQPRLSEALGQTVVISNRPGAGGVVATSYVAKSEPDGHTLFLSWDSHTINSIAMKDLPYDIFRDFAPVTLMVRMPLIMGAWGGLPVDNLQGLLELARRNPGKYNFASIGVGSSNRLHAELLNATAGVDIVHVPYAGGGPATTAIRSGEVAYGFFSYGALRNFIQEGRIKPLAVTGAKRLPELPDVPTLQESRFPGFEAYSWVGIYVPAATPAAEIKRLNQAFVAVLRDPEIEQKLRKLSVEVVASSPQALRDFERGDYEKWLAFTRQRNMSFD
complement(3572566..3573786)       acyl-CoA transferase; BBB37_16925                                                    N/A                 BordetellapertussisMNGARLPLAGIRVIDLSRVLAGPVCGALLGDKGADVIKVEDVEGGDESRHWAPQREGHSPVYVANNRNKRSIAVDLKAPEGRDIVAALIDTADVLIENFGTGAMERLGLGYDTLAARNPRLVYCSIAAFGRQGPRADEAGYEALMQAFSGVMSITGEPGRPPVRCGVSALDIFTGTLAGFAVSNAILMRQTSGVGQRLDASLFDSAVGLLNFQAQNYLLCGQKPAPMGSAHPSLVPYQCFLCHDHRWIFVAAGNDRLWRRLATAIGQPDLADDPRFLRNIDRVAHRRELLKLLDGCFASLPLEDALERCRQAGVPAAPVNSVAQALADPQAAQLAALRPMAHPDLGEIEVVGLPVAFSAIPAMPCAPAPAHGADTQAILRDLGMDGDTYEALRLRRVLKGSPRDGT
complement(3573783..3574427)       hypothetical protein; BBB37_16930                                                    N/A                 BordetellapertussisMTTQPGTRTARDALLAARNGRIRAMLARVRKIAEPAITRAGLARIRDELLALAAERDLFPIEEFPPIEGGNSSMYCLAEDPDHRYALYVVAPAAGGFAPPHDHRTWAVIAGMYGRERNKLYRRLDDGSDPDQARLEVSGELDIVAGTAVVLMPEDIHSIALGEDGPHGSLHLYGMSVEHCHDRRMYSLSKGTSRTFPAATGVVSAHGALRGGLA
complement(3574424..3574816)       hypothetical protein; BBB37_16935                                                    N/A                 BordetellapertussisMPFGGLEAWLAARAKRQDERAVVLMAHDESLARSAALNARLAGFDAAVLAGGVTAWQAQGLPLASGPGGGVAQAADVVVQPYDAGLQAMRDYLEWEQALTRQAIPTLPLYTAYRVPRPPAADMEQDQEAP
complement(3574705..3576057)       hypothetical protein; BBB37_16940                                                    N/A                 BordetellapertussisMELSTVSELRDLRATSDEYALFDVRESAQAHQGHIFGATFLPRRMLAARIASLVPRRSTPIVLYDEGGPDPRARLAAQTLARFGYTGVRVLDGGLRTWLAQGEAPCRGSNVPSKWFGETVHAHAATPALPIATLQAWRETGSAHRICDIRSPEEYGRARIPGAAGAFGSDLAWHADDLRRAGQPVVVHCSGRTRSIIACESLRLLGVQDAYALENGTMGWRLAGLALERGPGSGSLAASAASRRDGARRTQALARAAGVASVEAAMLARWLDERDAGRTNLYVLDIRQVAEYRAGHLPGAIALPGGLAVQRTDEFLPVRAAQVVLVDDDEARAALAGYWLRAMGLPRVAVLAGGLPAWNAAGYALGHGLPTMPTRWRHGRARRTTCTKRARACSASTSIRRPAFSPAAPTRPNGCRSAAWKRGSPPAPNGRTSAPSCSWRTTSRWPGPPR
complement(3576158..3576967)       IclR family transcriptional regulator; BBB37_16945                                   N/A                 BordetellapertussisMDQLIDAMETTDRQFATTLQRGLLVLACFDVRQPFLTNKEISARTGIPSPTVSRLTYTLTLMGYLKHHRHLGKYGKYELGNAVLSLAHPLLANVNVRQVARVPMRELAEYAHGWVSLGARERLSMVYLETARARNALDVKPDIGQTFPMLVSAMGRAYLAASQPSERERLMNQLRIYHPELMAEQAEELEHSRADYAAYGFCLSRGDYDRGTWAVAAPMRVPESQELLVFNCAVRVKNRQAEELGLHLIDVVGPRLLDMVDAIRRALED
3577272..3578225                   PHAGE_Bacill_G_NC_023719: gp344; BBB37_16950; phage(gi593777800)                     1.12e-62            BordetellapertussisMNPPKHAKVLILGSGPAGYTAAIYAARANLAPLVVTGLAQGGQLMTTTDVDNWPADPDGVQGPDLMQRFLRHAQRFDAGVVSDAIHTVRLDRRPFALTGDQGAYTCDALVIATGASAKYLGLPSERAFMGKGVSGCATCDGFFYRNRDVLVVGGGNTAVEEALYLSNICRTVTVVHRRDRFRAEPILVDRLQARAALGKVKFEYFHELDEVLGDASGVTGARLRDNRDGTARDVAAKGVFIAIGHAPDTGLFEGQLALRNGYIVTRGGLSGLATMTSIPGVFAAGDVQDQIYRQAVTSAGTGCMAALDAQRWLEGAA
3578372..3579274                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_16955; phage(gi52430457)     1.33e-104           BordetellapertussisMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
3584370..3584382                   attR                                                                                 N/A                 GGTGCCTGTCCCC

#### region 4 ####
3951334..3951351                   attL                                                                                 N/A                 AGCCGGCGCGCGGCGGCG
3955719..3956291                   PHAGE_Bacill_AR9_NC_031039: hypothetical protein; BBB37_18875; phage(gi100073)       1.56e-06            BordetellapertussisMLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVPDHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHHETRYLRQRVHGPRSTDSPSSETDGHAHIAG
3956272..3956958                   DNA-binding response regulator; BBB37_18880                                          N/A                 BordetellapertussisMRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLTRSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTVSESSES
3957018..3957386                   hypothetical protein; BBB37_18885                                                    N/A                 BordetellapertussisMLPGVVVLLVIDSWNDYRTLAAITNEAYDSALLEPARVLESSLEFAADGTLQVATPLYAQVMLESKGGTAKRRIYAICSALSVNLADSEYGPPGPAEVICAAASPRSQRLKTTSRSSGRMRG
3957314..3957985                   PHAGE_Pseudo_F116_NC_006552: hypothetical protein; BBB37_18890; phage(gi56692976)     4.72e-38            BordetellapertussisMCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIERHGWPWKLMIGVGRILVPADGWYEWRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
3958315..3958536                   hypothetical protein; BBB37_18895                                                    N/A                 BordetellapertussisMSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
3958536..3958817                   hypothetical protein; BBB37_18900                                                    N/A                 BordetellapertussisMPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAQPRKG
complement(3958814..3959329)       PHAGE_Burkho_Bcep176_NC_007497: gp56; BBB37_18905; phage(gi77864681)                 4.91e-10            BordetellapertussisMGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQELAAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAVDLLAYMLSRVSGRAEALAGVADRARIAGLTCERAYEAVRGNVRP
complement(3959329..3959880)       PHAGE_Rhodob_RcRhea_NC_028954: lysozyme; BBB37_18910; phage(gi971760165)             5.85e-12            BordetellapertussisMRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAEVERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRGRKRFVQGLRNRRLEERALCLSGL
complement(3959859..3960101)       hypothetical protein; BBB37_18915                                                    N/A                 BordetellapertussisMEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE
complement(3960106..3960918)       hypothetical protein; BBB37_18920                                                    N/A                 BordetellapertussisMIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGSGRRAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLGLDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGLIKVRAGAALDKHGYALPHRMIVNDGATVLE
complement(3960918..3961181)       PHAGE_Rhodob_RcapNL_NC_020489: tail fiber protein; BBB37_18925; phage(gi461474986)     1.85e-13            BordetellapertussisMMKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV
complement(3961400..3961816)       hypothetical protein; BBB37_18930                                                    N/A                 BordetellapertussisMSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGVPATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
complement(3961821..3962645)       PHAGE_Entero_mEp390_NC_019721: central tail fiber; BBB37_18935; phage(gi428782683)     7.90e-15            BordetellapertussisSGSDEPCIQPIESSHLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSSPFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLWRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITWISDTLPEGKTISCSIKARHPVDGTYYISGRVAVLAIQR
3962699..3963649                   PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; BBB37_18940; phage(gi52430457)     8.01e-112           BordetellapertussisMNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAHGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
complement(3963644..3964762)       DNA alkylation response protein; BBB37_18945                                         N/A                 BordetellapertussisMDTLSSTDTSATAASPVPDARGLNLFRADPYAAGLARCYLPADLCDHLLPHLDRLGALAGGRMDELAMTADRHPPTLSVRHRTGTDESRIDKHPAYVELERLAYSEFGLAALSHRGGVLGWPDPMPAAAKYALSHLFVQAEFGLCCPVSMTDSLARTLRKFGDPALVEQVLPQVITQDFDQLQQGAMFMTEQGAGSDVSATTVTAQAQADGRWALHGDKWFCSNPDAGFAMVLARSEPDAGLRGVSLFLLPRRLPDGSPNHYRILRLKDKLGTRSMASGEIRLEGALAWLVGQRGQGFKHMADMINNSRLSNGMRAAGLMRRALTEAVFFAQQRCAFGKRLIDMPLMRRQLAKMAMRAEQARSVMFQTAQALA
3964872..3965774                   PHAGE_Burkho_phi1026b_NC_005284: gp58; BBB37_18950; phage(gi38707948)                1.84e-09            BordetellapertussisMDLEPRLLRYFIAVAQERNFSRAAQRLHISQPPLSYAIRQLEIQLGARLFERSSRHVALTDAGRVLYGEALSLLRQGEEVGRLVRRAEAGLQGRLRIGFVGSMLYRGLPDLLAALRAELPDVEQVLAERNSHDQLEALRCGELDLGFIHANPPPEGVSARDLVAEPFVVCLPDTHRLAGQRSLRLADLAGEDFVFFAQAASPSYYETVLSLCVAAGFHPAVRHEVRHWLSVAALVASGLGVSIVPACLARAGLAGTCYVAFEHQARSVCQIAWPSLAPTSLQATALQAALRHFAPPPVRA
complement(3965776..3966630)       PHAGE_Synech_S_SKS1_NC_020851: cyanobacterial phosphoribosylglycinamide formyltransferase; BBB37_18955; phage(gi472340960)     9.00e-17            BordetellapertussisMQHNDYILTLSCPDRTGIVFRVSGLLFELGCNIRDSQQFGDEETGRFFLRVHFDLPRAAAESALREQFAALANGYDMQWQIHDAHRKARLLIMVSKQGHCLNDLLFRVSSGQLRAEVAAIVSNHNDYASLAASYGIPFHHMPVTPDTKAAQERQVLELVEREQIDLVVLARYMQILSADMCQALAGRAINIHHSFLPSFKGARPYHQAHARGVKIIGATAHYVTSDLDEGPIIEQDIERVDHTMTAADLTQVGSDIESLVLSRAVRSHVEHRILLNRSKTVVFR
3967401..3967418                   attR                                                                                 N/A                 AGCCGGCGCGCGGCGGCG
