gi|00000000|ref|CP016401.1|  Mycobacterium caprae strain Allgaeu genome. 4324961, gc%: 65.59%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
3800361..3800669                   PHAGE_Mycoba_Macncheese_NC_042338: minor tail protein; BBG46_17795; phage(gi100056)     9.24e-13            MycobacteriumtuberculosisvariantcapraeMPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA
complement(3800741..3802360)       PHAGE_Vibrio_VAP7_NC_048765: hypothetical protein; BBG46_17800; phage(gi100134)      1.57e-99            MycobacteriumtuberculosisvariantcapraeMSKLIEYDETARRAMEVGMDKLADTVRVTLGPRGRHVVLAKAFGGPTVTNDGVTVAREIELEDPFEDLGAQLVKSVATKTNDVAGDGTTTATILAQALIKGGLRLVAAGVNPIALGVGIGKAADAVSEALLASATPVSGKTGIAQVATVSSRDEQIGDLVGEAMSKVGHDGVVSVEESSTLGTELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLAGGVAVIKVGAATETALKERKESVEDAVAAAKAAVEEGIVPGGGASLIHQARKALTELRASLTGDEVLGVDVFSEALAAPLFWIAANAGLDGSVVVNKVSELPAGHGLNVNTLSYGDLAADGVIDPVKVTRSAVLNASSVARMVLTTETVVVDKPAKAEDHDHHHGHAH
complement(3802455..3802757)       PHAGE_Bacill_0305phi8_36_NC_009760: GroES; BBG46_17805; phage(gi156564025)           1.50e-17            MycobacteriumtuberculosisvariantcapraeMAKVNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK
complement(3803024..3804058)       PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: methyltransferase type 11; BBG46_17810; phage(gi100001)     5.33e-77            MycobacteriumtuberculosisvariantcapraeMTTVLGIETSCDETGVGIARLDPDGTVTLLADEVASSVDEHVRFGGVVPEIASRAHLEALGPAMRRALAAAGLKQPDIVAATIGPGLAGALLVGVAAAKAYSAAWGVPFYAVNHLGGHLAADVYEHGPLPECVALLVSGGHTHLLHVRSLGEPIIELGSTVDDAAGEAYDKVARLLGLGYPGGKALDDLARTGDRDAIVFPRGMSGPADDRYAFSFSGLKTAVARYVESHAADPGFRTADIAAGFQEAVADVLTMKAVRAATALGVSTLLIAGGVAANSRLRELATQRCGEAGRTLRIPSPRLCTDNGAMIAAFAAQLVAAGAPPSPLDVPSDPGLPVMQGQVR
complement(3804055..3804531)       PHAGE_Pseudo_vB_PaeS_PAO1_Ab19_NC_042115: hypothetical protein; BBG46_17815; phage(gi100011)     7.53e-06            MycobacteriumtuberculosisvariantcapraeMTADTEPVTIGALTRADAQRCAELEAQLFVGDDPWPPAAFNRELASPHNHYVGARSGGTLVGYAGISRLGRTPPFEYEVHTIGVDPAYQGRGIGRRLLRELLDFARGGVVYLEVRTDNDAALALYRSVGFQRVGLRRRYYRVSGADAYTMRRDSGDPS
complement(3804528..3805148)       PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; BBG46_17820; phage(gi16129761)     4.06e-11            MycobacteriumtuberculosisvariantcapraeMSTVLAIDTATPAVTAGIVRRHDLVVLGERVTVDARAHAERLTPNVLAALADAALTMADLDAVVVGCGPGPFTGLRAGMASAAAYGHALGIPVYGVCSLDAIGGQTIGDTLVVTDARRREVYWARYCDGIRTVGPAVNAAADVDPGPALAVAGAPEHAALFALPCVEPSRPSPAGLVAAVNWADKPAPLVPLYLRRPDAKPLAVCT
complement(3805160..3805666)       tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE; BBG46_17825     N/A                 MycobacteriumtuberculosisvariantcapraeMSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS
complement(3805663..3806823)       alanine racemase; BBG46_17830                                                        N/A                 MycobacteriumtuberculosisvariantcapraeMAMTPISQTPGLLAEAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTYREAENR
3807306..3807317                   attL                                                                                 N/A                 CGTGTCTTTTAT
3807307..3807606                   PE family protein; BBG46_17835                                                       N/A                 MycobacteriumtuberculosisvariantcapraeMSFIFTTPQALDNAAKSVSGIHDLWLADSKTAITVVNAIVPPAADPVSNRMVGRIIEHMAQYQQISSQALEYLRGFSQGLAENAEAYRLAEAQNSTTFD
3807692..3808234                   hypothetical protein; BBG46_17840                                                    N/A                 MycobacteriumtuberculosisvariantcapraeMPFTLTPAHQISYQMYAGPGADSMRAASQQLRELAFSADTTADSLNDTLFDLDDTWIGGSSAFMTDAALRYLKWLSKHSKRLWQTANTIHHLANTYEDIRQRVVPPAAIEDNREEVRRLIASDITGENAPAIAELDEQYQSYGDTNVQAMNLYAERAQTLLSQLPRWQEPPQIHQRGRGG
3808325..3808720                   hypothetical protein; BBG46_17845                                                    N/A                 MycobacteriumtuberculosisvariantcapraeMTINNQFDDADTHGATSDFWCDAEWAGLRGPVAAGLGRAALVGYLSVPQGWTEANQANLAAGTEAEPNQALGWLPMQDIDAAAEAAAQPSHALGWLPIEEIDAAASDDGEVSSSPQLPPRPFMMPHTPSGG
complement(3809603..3809965)       hypothetical protein; BBG46_17850                                                    N/A                 MycobacteriumtuberculosisvariantcapraeMPNPVTMLYGRKADLVILPHVLAEERPHPYSTPGRKRGAQIALTTGIDALASFAPQIVNPRHGLSRVVQCLGGCENKRHAYFRSISKTPHIRARGVPSVCAVRTVGVDGAKRPPKPIPVQ
3810128..3810658                   hypothetical protein; BBG46_17855                                                    N/A                 MycobacteriumtuberculosisvariantcapraeMHPMIPAEYISNIIYEGPGADSLFFASGQLRELAYSVETTAESLEDELDELDENWKGSSSDLLADAVERYLQWLSKHSSQLKHAAWVINGLANAYNDTRRKVVPPEEIAANREERRRLIASNVAGVNTPAIADLDAQYQQYRAQNIAVMNDYVSWTRSALSDLPRWREPPQIYRGG
3810925..3811455                   hypothetical protein; BBG46_17860                                                    N/A                 MycobacteriumtuberculosisvariantcapraeMHLMIPAEYISNVIYEGLRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVAGVNTPAIADLEAQYEQYRAENIQAMDRYLSWTRFALSKLPRWREPPQIHRSG
complement(3811773..3812528)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; BBG46_17865; phage(gi557307613)     9.49e-27            MycobacteriumtuberculosisvariantcapraeMSICDPALRNALRTLKLSGMLDTLDARLAQTRNGDLGHLEFLQALREDEIARRESAALTRRLRRAKFEAQATFEDFDFTANPKLPGAMLRDLAALRWLDAGESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGGHADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPNNWYGLFPNPVVAESLLDRLINTSHQILMDGPSYRPRKRPGRTTS
complement(3812646..3813857)       PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; BBG46_17870; phage(gi557307612)     1.77e-20            MycobacteriumtuberculosisvariantcapraeVATIAQRLRDDHGVAASESSVRRWIATHFAEEVARERVTVPRGPVDAGSEAQIDYGRLGMWFDPATARRVAVWAFVMVLAFSRHLFVRPVIRMDQTAWCACHVAAFEFFDGVPARLVCDNLRTGVDKPDLYDPQINRSYAELASHYATLVDPARARKPKDKPRVERPMTYVRDSFWKGREFDSLAQMQQAAVTWSTEVAGLRYLRALEGAQPLRVFEAVEQQALIALPPRAFELTSWSIGTVGVDTHLKVGKALYSVPWRLIGQRLHARTAGDVVQIFAGNDVVATHVRRPSGRSTDFSHYPPEKIAFHMRTPTWCRHTAELVGPACQQVIAEFMRDNAIHHLRSAQGVLGLRDKHGCDRLEAACARAIEVGDPSYRTIKGILVAGTEHAANEPTTSSPASTAG
complement(3813940..3814137)       integrase; BBG46_17875                                                               N/A                 MycobacteriumtuberculosisvariantcapraeMLDLVELLTHWHAGRSQVRLSESLGIDRKTVRKYTAPAIAAGIEPGGEPLSAEQWAELIGGWFPE
3814654..3814665                   attR                                                                                 N/A                 CGTGTCTTTTAT
3815054..3815590                   hypothetical protein; BBG46_17880                                                    N/A                 MycobacteriumtuberculosisvariantcapraeMHPMIPAEYISNIIYEGPGADSLFFASGQLRELAYSVETTAESLEDELDELDENWKGSSSDLLADAVERYLQWLSKHSSQLKHAAWVINGLANAYNDTRRKVVPPEEIAANREEVHRLIASNVAGVNTPAIADLDAQYQQYRAQNIAVMNDYQSTARFILAYLPRWQEPPQIYGGGGG
complement(3815531..3816694)       PROPHAGE_Lactoc_Il1403: transposase of IS904H; BBG46_17885; phage(gi15674055)        1.30e-14            MycobacteriumtuberculosisvariantcapraeMIDTAIEEMIPLIGVRAACAATGRAPASYYRAHSKRLSAQSDTFTSTAVTDPSGPRESAQPRALSAAEREHVLAVLNSQRFADMAPAVVYATLLDEGIYLCSESTMYRLLRERGQTGDRRRQATHPAAVKPELVAHQPNSVWSWDITKLRGPAKWSYYYLYVILDIFSRYVVGWMVASRESKVLAERLIAQTLAAQHISADQLTLHADRGSSMSSKPVALLLADLGVTKSHSRPHTSNDNPLSEAQFKTLKYRPDFPKRFESIEAARVHCDRFFGWYNHEHKHSGIGLHTPADVHYGRADQIRRHRATVLDTAYRDHLERIRSQTTRATRATGLQRDQPTTEGGPADSINPRKSCLRNVDRFRPGLLDLPAPAPVDLRRLLPSGQIR

#### region 2 ####
4029982..4030329                   PHAGE_Escher_503458_NC_049341: hypothetical protein; BBG46_18875; phage(gi100008)     3.74e-05            MycobacteriumtuberculosisvariantcapraeMLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR
4030714..4031214                   transposase; BBG46_18880                                                             N/A                 MycobacteriumtuberculosisvariantcapraeMPGRVFASPADFNTQLQAWLVRANHRQHRVLGCRPADRIEADTAAMLTLPPVGPSIGWRTSTRLPRDHYVRLDGNDYSVHPVAIGRRIEITADLSRVRVWCGGTLVADHDRIWAKHQTISDPEHVVAAKLLRRKRFDIVGPPHHVEVEQRLLTTYDTVLGLDGPVA
4031214..4031960                   PHAGE_Escher_520873_NC_049344: primase; BBG46_18885; phage(gi100047)                 1.28e-45            MycobacteriumtuberculosisvariantcapraeMAAKTATNSRDVAAELAYLTRALKAPTLRGAIEQLADRARTKTWSYEEFLAACLQREVSARESHGGEGRIRAARFPSRKSLEEFDFDHARGLKRDTIAHLGTLDFVTLAIGIAIRACQAGHRVLFATASQWVDRLAAAHHSGTLQSELIRLARYPLLVVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVIALKGDSYRIKDRDLGRVPTVTADDQ
complement(4032114..4032680)       hypothetical protein; BBG46_18890                                                    N/A                 MycobacteriumtuberculosisvariantcapraeMAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAANDSAQDGFRHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVHVDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQPSAGQQGPS
complement(4032750..4033979)       PHAGE_Coryne_Poushou_NC_042139: hypothetical protein; BBG46_18895; phage(gi100031)     8.31e-133           MycobacteriumtuberculosisvariantcapraeMALPQSALSELLDAFRTGDGVDLIRDAVRLVLQELSELEATERIGAARYERSDTRVTDRNGARSRVLSTQAGDVELRIPKLRKGSFFPAILEPRRRIDQALYAVVMEAYVHGISTRAVDDLVEAMGVETGISKSEVSRICAGLDEIVGAFRTRTLGHIEFPYVYLDATYLNVRNGTGQVVSMAVIVASGIAADGSREILGLDVGDSEDETFWRGFLTSLKGRGLGGVRLVISDQHAGLVKALKRCFQGAGHQRCRVHFARNLLAHVPKDKADMVASMFRMIFSAPDAEAVHATWEEVRDRLAASFPKIGPLMDDARAEVLAFTAFPKAHWQKIWSTNPLERINKEIKRRSRVVGIFPNPAAVIRLVGAVLADMHDEWQASERRYLSEASMALLYPDSDNAVVAAISGGQ
complement(4034155..4034790)       PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; BBG46_18900; phage(gi526003651)     2.17e-05            MycobacteriumtuberculosisvariantcapraeMPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLVAMFKGILDAEPTYDF
complement(4034801..4034995)       hypothetical protein; BBG46_18905                                                    N/A                 MycobacteriumtuberculosisvariantcapraeMFVQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ
4035390..4035581                   PHAGE_Tsukam_TPA4_NC_030916: putative phosphoesterase; BBG46_18910; phage(gi100037)     2.46e-07            MycobacteriumtuberculosisvariantcapraeMERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGDIPT
complement(4035592..4035667)       tRNA                                                                                 N/A                 GCCGCCTTAGCTCAGTCGGTAGAGCGATTCACTCGTAATGAATAGGTCAGGAGTTCGATTCTCCTAGGCGGCTCCA
complement(4035746..4036954)       PHAGE_Nodula_vB_NspS_kac68v161_NC_048757: putative replicative DNA helicase; BBG46_18920; phage(gi100080)     5.24e-13            MycobacteriumtuberculosisvariantcapraeMMSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR
4037097..4038686                   PHAGE_Pelagi_HTVC008M_NC_020484: adenylate/guanylyl cyclase; BBG46_18925; phage(gi460042455)     6.37e-20            MycobacteriumtuberculosisvariantcapraeMATTAALPRRIHAFVRWVVRTPWPLFSLSMLQSDIIGALFVLGFLRYGLPPQDNIQLQDLPPVNLLIFVSTVIILFLAGAVVNLKLLMPVFRWQRRDNLLTEPDPAATELARSRALRMPLYRTLISLAVWATGGGVFILASWSVAKHAAPVVAVATALGATATAIIGYLQSERVLRPVAVAALRSGVPENVNAPGVILRLMLAWIPSTGVPLLAIVLAVAADKIALLHATPEALFNPILMMALAALGIGSVSTLLVAMSIADPLRQLRWALSEVQRGNYNAHMQIYDASELGLLQAGFNDMVRELSERQRLRDLFGRYVGEDVARRALERGTELGGQERDVAVLFVDLVGSTQLAATRPPAEVVQLLNEFFRVVVETVARHGGFVNKFQGDAALAIFGAPIEHPDGAGAALSAARELHDELIPVLGSAEFGIGVSAGRAIAGHIGAQARFEYTVIGDPVNEAARLTELAKLEDGHVLASAIAVSGALDAEALCWDVGEVVELRGRAAPTQLARPMNLAAPEEVSSEVRG
