gi|00000000|ref|CP017758.1|  Cupriavidus necator strain NH9 chromosome 2, complete sequence. 3395604, gc%: 65.54%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
576785..577585                     PHAGE_Mycoba_Troll4_NC_011285: gp65; BJN34_22615; phage(gi206599859)                 3.75e-10            CupriavidusnecatorMSDIQRLLGRVALVTGGGSGMGLATAQRLASEGAKVLIVDQHATAAHEAAESIGSSAAAFSADVTSEPDMDAAVAYAVSCFGRLDIGINAAGIGASALLLEQSLEQFRRLQDVNLAGVFVSVKAEARQMIAQSGGGVIVNFASTNALQPAEGLGAYCAAKAGVAMLTQVAAMELAPHGIRVVGVGPGLTSTPMVDRVLSVPGAREAFTENILLRRAGRPEELAASVAFLVSDDASYITGTTLYVDGGALTQRYPELHRRRSATKSN
577599..578546                     hypothetical protein; BJN34_22620                                                    N/A                 CupriavidusnecatorMKALVYAGDRKVEISNVELAFDENKDVLVDVLRTGICGTDVGAVAHGRPKLPPGVVLGHEFVGRRNDTGALVVGNPIVSCRSCSVCQSGMTHLCAKRQVLGVHRQGAFAPRVAVPAGNLVEVEHLTHAQAALVDPLATALHAWRLVRRTCQRVAVIGAGAIGLCSVAVLKAAEVSEIYASDVVPERREFAQRLGATAVGVSPEGEFDAVIDAVGTEETRRIAVSILRPGGVAVLVGLHAAEVVLAAGPLIGGERTIQGSFAYTEAEFIEASRMASMLDTSWVREIAFGAAADTLNAMVTGQLGAGNIKVHVCIGE
578640..579995                     MFS transporter; BJN34_22625                                                         N/A                 CupriavidusnecatorMQPSEISEASLGPNGMQPSTPARSGFHPTRAWRMVAILAAMLLLSFVDRYALTVLVGPIKQDLQLTDTQIGLLLGTAFGVFYSTAGLPIGYLIDRYNRRNLLTAGVVIWSLMTVLSGFAQDFTTLFIGRMGVGLGEAVLTPAAYSLIKDSFPDHLRGKAYGFYLFGSSVGTGAALVVTTGLAGWLGGADLSMMPWFSALAVWQQVLIVIGGAGLPIAALGMLIREPLRSDTGNSNAATLSAVVQHASGNSRIYVPLFLLYAVWGLCIYSYGAWIPTAISRAWHVPIAAIGSQYGYMTMCLAPLAALIFSRIFDRLAKTGLSHRVALLSGLACLAVAVPTGIGPLAISPALTWICLGINIFFAMGVQLALALIIANVTPGRMIGKLSACGFLFLNVVGLGVGPISIPFVAKQIDAGEGAIGLALGPVASAGWLVAGGLFLLVWRGTRRAGMR
complement(580183..581067)         PROPHAGE_Xantho_33913: ISxac3 transposase; BJN34_22630; phage(gi21231086)            2.69e-73            CupriavidusnecatorMSYRVVTHLQQEAISVSNACRVLQVSRSGYYAHRRAKPSAKSLQEQTHVKAAFAASGANYGSRRVMHALRAQGLRIGRYRVRTLMRETGLRARWKRKFVSTTDSRHTLPVAENVLDRQFDVAEPNRAWVSDITYIRTAQGWLYLAVVLDLYSRRVVGWSMAPTMPAGLVMSALTMALQQRRPEPGLVLHSDRGSQYASDEYQALLKQHHVVCSMSRKGNCWDNSVMERFFLNLKMERVWQRQYANHDEARRDINQYIIAFYNPVRLHSTLGYLSPTAYEAETTVKEPICLSEIT
complement(581064..581360)         PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BJN34_22635; phage(gi24373865)       2.56e-12            CupriavidusnecatorMTRRRRQFDTSFKLEVVRMVRDQGLSVSEVCRSMELGETAVRRWVAQYDAERAGGPGEGKPLTAEQQRIRQLEAENRQLREDNALLKKASAFFARELK
581705..582181                     PHAGE_Stx2_c_1717_NC_011357: truncated transposase; BJN34_22640; phage(gi209447151)     3.70e-05            CupriavidusnecatorMMGNECEVPPLRVIRVRSNGKRDFDPRDKRQLVEACLRPGVSVAGMALKVGINTNQLRKWIRLHRVATEAAAADRAEPALPAFVPVVEVSGATRVPESPVALECLPAQAPASTQPSPRPPLTPALLTARLPNGVMVELQCGGQDLALVKAMIEALGAR
582181..582534                     PHAGE_Stx2_c_1717_NC_011357: transposase; BJN34_22645; phage(gi209447152)            2.34e-17            CupriavidusnecatorMFRLDADLRVYLHRNAVDFRLGINGLVALVEQSMQLDPFASAVYAFHNRRRNRIKLLLWDRNGFWMLLKRLEEDRFVWPRREQAVIELTTEQLHWLLDGIDVDAVKRHPSRQYQHTA
582592..584199                     PHAGE_Stx2_c_1717_NC_011357: transposase; BJN34_22650; phage(gi209447153)            2.96e-70            CupriavidusnecatorMNEHDLSQLPPAAQAYIRELEARAAANAQHIAELNDRIKLLEEQFRLAQSKRFAPSSEKIKDRVFDEAEQMVAAEPANDDEDEALAPPDTGLPEPDKPAGRKRGRKPLPAELPRQRIEYDLTEDQKICPCCQGSMHRLGEEVSEQLHIEAKVSVLQHVRFKYACRHCERNAERTPVVTAPMPAQPLPGSNASPAMLATVTIGKYVDGTPLYRMEDALGRAGIEVGRGTLANWIIRPAELHYSRLYEALRRTLLSQPLIHADETTVQVLKEQGKAAQSKSYMWVYRSAEDCGEPVVLFDYQPGRGQEYPQAFLAGYEGMLMTDGYSAWRTLEGVTHFGCLAHARRAFVDALKGQKKLGGHAAQALEYFKALYQIEALAKAELPEGQSRADYTYRLRQQHSVPLLTAFKAWLDEQAPRVLPESLLGKAIVYTRNQWEYLSRYIVDGRAPVDNNVIERDVRPFATARRSWLFSDTVAGAKASAMVYSLMLTCRACGVEPYAYLLHVLTELPQRAPDADISDLLPFNFARRQTAPPHPA

#### region 2 ####
complement(3285758..3286018)       PHAGE_Ralsto_RSA1_NC_009382: putative bacteriophage gp29 protein; BJN34_34715; phage(gi145708075)     1.48e-06            CupriavidusnecatorMKSPIRLCDSLENGGQVTTASPTMTFMNRPLARKGDAAHCDRHGATTIAEGHDGFPDQDGRLVAMHHHRCACGCRLISSLLNVHIA
3286659..3287086                   PHAGE_Entero_HK022_NC_002166: IS903 transposase; BJN34_34720; phage(gi9634149)       5.23e-28            CupriavidusnecatorMRKDEHKTREPKGIYRVRNWSAYNAGLIARGDVTIWIDRGVLKQEPAAGSLNRGRPRVYSDAVIQMLLGLKQVFRLPLRALQGFAHSVRALAFADLPVPNYTTLSRRAQELEVVLPVRRADESLHLVVDSTGLKVFGVCASQGA
3287157..3288605                   PROPHAGE_Xantho_306: integrase/recombinase; BJN34_34725; phage(gi21244651)           3.63e-37            CupriavidusnecatorMTARRTTIRQLPLTEVVDRNTSGATPVSITTPEGGTIYHTVPLADPDTGKRRDDRPQWITGTFPLFPVVRLADGAPWAEANLWLIDMIESKPSPNMLTFASIADDLVAFRRYLDNEGVDWLAFPANKRQRPTYRYSASIRLAVQAGELSPGVARRRMGAVVRFYRWLMTEAGFRPANAPWTESGRFIEFRDHKGFSRAIEVKTTDLSISGRRADDPWDDHIQDGGRLRPLPSAEQSVLLESLATLGNTEMTLVHLFALLTGARIQTVLTVRARHVMRKPGEFHGDDIRLACGPGTGIDTKGGVKGVLHLPRSFYERLYTYVHSDRARKRRQLADGGDHPVQPLFLSYRGAPLYEDRASRGPVSTGPQVRRHVKTGQAVRQFIRDELLPMMRVQLGNPRYEFSFHDLRATYGLNMVDTMTANETKYTRALDQLRQLMWHVQPSTTERYLAYRENCKLFDAVQDGWGVHLSTLVTRTLDTAVAA
3288602..3290482                   integrase; BJN34_34730                                                               N/A                 CupriavidusnecatorMSRQYEEVRMPLAEGTTLLHPERALLRWEGMSGRSDIGQICYLKRDASSLRCTRRTFDPTSFSSERARVVRLLVTQLSGRMTLGAMRPRTVDGALRVVLEFVNWADRQGLHQVLCHEKTTAEAVHRYFRERREQVSLGNLKRNSVDISQRRLLSMLRELFRNDDFCADARVLGRQRDASVPTAVPDSEAQATLLSWADALFSGISTLVLDFKPYPVHVTTARGESLCLVPRRHHRRGGDGSHGLAGWNLETGEPRTREELTMRMAEADAKNPSKRSGDIARSAAKHLAAANEDAQSEIRRSHASMAVFCFAALFLAETGVNLAQLLAMKWSLELAASLQDASVVRQKFREVKYRAGAKEITFTVSLGFMPKLKAYLALREYLVQDAGCDALFIVVGHSPQRRRPIPLPTQFLTLLYDRLDTLGIVLPRISARQWRATKQDWAVSNHGPVIAARLMGHSVETALRSYSNGTDAAHKAEMGVFLASVEKTVLKTGDDPAGSIRSAVGVCIEFRKPVPIAASVTVKPDCRSTEGCLFCDQYRVHADAADIHKLLGCRHCVRLVSGRADSIEQYDSSFGAVLRRIDFLLDELRKRDAALVDQIEQDVDVDGNLDAFWSAKLDQLYELGVA
3290479..3292359                   integrase; BJN34_34735                                                               N/A                 CupriavidusnecatorMNNTLIAPIAERPDWYRVEDDTVATRDKAANAVSLFSDAAWDIRAYTIGPRTHIYFRGHLPDGASRALSEATTRQWKQVMYFLMHEATDTVPASSTLNSGSACLKGFAFFAAERELTLYEGLSSVAIVLDYVAQPGMERKAQRLHSVLVKLHRLGVGTTGLRVPLAQLHKPLLERFAQRAGNSQHPVVPTRIYQHFLLACEHDLGVAEGIVDVLSDYLARLYAGESPSVPSELVRVAAHFGYKAVPYVASSLVASIRALCQLVILSFTGMRATEAESLPYDCLSETRLDGVTHYTIEGVTTKLSGGRPRRARWVTSPIAARAVGLAQRLSGEAHRAHGAQGYAESTDGSHLLFCRMGLHMGYVANRAASTVHNDIEAFRERVFPTITVEDIAELKRVDMHRAWEDEPKYAVGRQWPFTRHQLRRTLALYAHRSGLVTLPTLKRQLQHITQEMSMYYARGSAFAKGFIDTDRTHFAKEWAGAQGLSEYLAYAEQVLFSDVRLFGGHAAWTQSRAVQASPVSVYSREQTMRMFVKGELAYRETVLGGCASVEQCKSTPLDWMRLDCLESDCRNLVVVPSKLRRVINAQQVTVAKLRAVDETSVEYRIEAQALQRLLDAQEKLIKSEAA
3292356..3292718                   hypothetical protein; BJN34_34740                                                    N/A                 CupriavidusnecatorMSGAMTDYYAALERLKNRKGARINNDTVAIEAGRKKGSIKKSRPQFTELIAAIDAANAVAGRPKLELTERLNRAKGDAKDLQAQLDESLARELALLHQVFRLRKELAALRGGSVLPLQLR
3292893..3293444                   PHAGE_Entero_HK022_NC_002166: IS903 transposase; BJN34_34745; phage(gi9634149)       9.54e-40            CupriavidusnecatorGEGEWKVRKHGYSKRRTWRKVHLAMDAKTGQICAALMTHQDVGDADVLPELLDQVPTDTPIDTVGGDGAYDTKQCHAAIAARDAQPSIPPREGAMPWPESTSGAAWRNEAIDAIARSSRREWKKSSGYHRRSLVETLMYRLKALTGNCLWARKVGSQATEVAIRVGVLNRMTALARPHSVRIA
