gi|00000000|ref|CP018220.1|  Salmonella enterica subsp. enterica strain LSP 389/97 plasmid 197365, gc%: 52.29%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
15579..15590                       attL                                                                                 N/A                 ATTCCTTTCAGA
complement(28438..29175)           PHAGE_Bacill_Shbh1_NC_030925: hypothetical protein; A5895_25440; phage(gi100020)     9.66e-16            MYSTDVVKENAYLSATRSGLESNEIAILQRSLPSRFNLRHLKKNESLKLVLQKKAGKSRVVAYKFTSGSFNYTAYRISDKKFYNLSDTSGKGSLDYPLPATARLSSPFNPARLNPVSGKVSPHNGIDYSMPMNTKIVSVIDGKITRAEYNSTMGYFVEVTGKAGVKTRYLHLNKILVTKGARVTRGGAIALSGNSGRSSGPHLHYELVINNNPVNSLAFRASAPADNKLEQHAFAHARDYERYLD
complement(29400..30260)           PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A5895_25445; phage(gi100066)      5.20e-57            MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW
complement(30443..30829)           PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; A5895_25450; phage(gi100061)     7.80e-13            MPVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGDMGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS
30888..31592                       PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; A5895_25455; phage(gi985761246)     6.69e-46            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
31603..31646                       attL                                                                                 N/A                 TAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCGT
31622..32326                       PHAGE_Burkho_KS14_NC_015273: gp37; A5895_25460; phage(gi327198306)                   9.82e-18            MANFATVPSNELTEAAYYLSLKAKRVLWLCLMQTYFTASVSEDDDEMAVLGDSTFKVKVADYQQIFQVSRNQAIKDVKEGVFELSRSAVIFYPKEGSFDCVARPWLTEAGSRSARGIWEIEFNHKLLRYIYGLTNQFTTYSLRDCGSLRNPRTIRLYESLAQFKSSGLWVTTHAWLNDRFLLPESQQKNLAELKRSFLDPALKQINEKTPLLAKYSIDDSGKFLFSIIDKQNPV
complement(33105..34541)           glutathione synthase; A5895_25465                                                    N/A                 MSTLDVQKLKDDAVEWALTHGVAFKESSYSAVHTPFTLTPTPISRKSYQYLKNATGILSKLIYSVSEDHDFLYSAIYPIKAGNAFFSALLNMHQQIHSSSRHAPRLPLLIMRSDFMDDNRDGFRLIEFNGIAAGMGPFGQRIHDLHHYLQRQYPAVFSDLSNQATGALVDNQAIEGLSAAICQATCRIKQEFGDPGPARFLMIVQENENNVFDQHLLELALQQKGIETHRRTFRELHNQLSTGADNRLILEGVGPLDTVYLRAGYQYSDYEAFNIDEQECCQALMATRVFIEQHRVAVNATVGQQLATSKRVQMLLSQLGYDEFVAFGLTLQEAKIAKTILGEMLPISPDSINLAKESPSETWVLKNQGEGGGHCLFGADILTKLTELTPQQYQSWSLMRRLHPQPRAMPTLIVRKGELHKVNDLISELGMFSVQTDNNPSSAEHSFAGYLIRSKSAESTEGGVHSGQGVLDSLVYSD
complement(34629..34817)           hypothetical protein; A5895_25470                                                    N/A                 MGSCAAPSAKGDDKFITTDYLQQCLKIDHTERETTGVVGKAERLTWHKAWTMVSTGFSISYT
34808..35512                       PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; A5895_25475; phage(gi985761246)     7.52e-46            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
35523..35566                       attR                                                                                 N/A                 TAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCGT
35560..36681                       PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A5895_25480; phage(gi100060)      6.51e-41            VPLLALLEETADDRVTRFVWLRQFEPGSNSSSANRLLDRLEYLQRIDLPEDLLAGVPAHRVTRLRRQGERYYADGMRDLPEDRRLAILAVCVSEWQAMLADAVVETHDRIVGRLYRASERICHAKVADEAGVVRDTLKSFAEIGGALVDAQDDGQPLGDVIASGSGWDGLKTLVAMATRLTATMADDPLNHVLDGYHRFRRYAPRMLRLLDLRAAPVALPLLEAVTALRTGLNDAAMTSFLRPSSKWHRHLRAQRAGDARLWEIAVLFHLRDAFRSGDVWLTRSRRYGDLKHALVPAQSIAEGGRLAVPLRPEEWLADRQARLDMRLRELGRAARAGTIPGGSIENGVLHIEKLEAAAPTGAEDLVLDLYKGSP
complement(36705..39671)           PROPHAGE_Xantho_33913: Tn5041 transposase; A5895_25485; phage(gi21231545)            1.63e-46            MPRRLILSATERDTLLALPESQDDLIRYYTFNDSDLSLIRQRRGDANRLGFAVQLCLLRYPGYALGTDSELPEPVILWVAKQVQAEPASWAKYGERDVTRREHAQELRTYLQLAPFGLSDFRALVRELTELAQQTDKGLLLAGQALESLRQKRRILPALSVIDRACSEAIARANRRVYRALVEPLTDSHRAKLDELLKLKAGSSITWLTWLRQAPLKPNSRHMLEHIERLKTFQLVDLPEGLGRHIHQNRLLKLAREGGQMTPKDLGKFEPQRRYATLAAVVLESTATVIDELVDLHDRILVKLFSGAKHKHQQQFQKQGKAINDKVRLYSRIGQALLEAKESGSDPYAAIEAVIPWDEFTESVSEAELLARPEGFDHLHLVGENFATLRRYTPALLEVLELRAAPAAQGVLAAVQTLREMNADNLRKVPADAPTAFIKPRWKPLVITPEGLDRKFYEICALSELKNALRSGDIWVKGSRQFRDFDDYLLPAEKFAALKREQALPLAINPNSDQYLEERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLPRIKITELLMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTYAKLSWLQAWHIRDETYSAALAELVNHQYRHAFAAHWGDGTTSSSDGQRFRAGGRGESTGHVNPKYGSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQAYPTLRPLIGGTLNIKHVRAHWDDILRLASSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATQGLVEAGKPVDGELLQFLSPLGWEHINLTGDYVWRQSRRLEDGKFRPLRMPGKP
complement(39675..40235)           PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; A5895_25490; phage(gi100061)     3.52e-83            MQGHRIGYVRVSSFDQNPERQLEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHSMDRLARNLDDLRRLVQKLTQRGVRIEFLKEGLVFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSDEQAATLRQRATAGEPKAQLAREFNISRETLYQYLRTDD
complement(40411..40761)           transposase; A5895_25495                                                             N/A                 MEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVNQWRNTTMNANEPSTSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFQARASTATETSVKPDACDSPPSG
40826..41005                       transcriptional regulator; A5895_25500                                               N/A                 MDPSGNDGLLPAISGRREDFPQPAVRCGTDGLRAGVVNPPGLTCAALPLTSEGRQRIKR
complement(40964..41977)           PHAGE_Mycoba_Butters_NC_021061: integrase; A5895_25505; phage(gi479336499)           2.05e-12            MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
42144..42986                       PHAGE_Mycoba_Bactobuster_NC_031279: prohead core protein protease; A5895_25510; phage(gi100061)     3.91e-07            MKEKVVVDKAISLYTESFGDPAHEPIILIMGAMSSAVWWPDEFCSQLAKMGRYVIRYDHRDTGKSTSYEPGQAPYSVEELADDVVRVIDGYGLEAAHLVGMSLGGFLSQLVALKYPKRVKSLTLIASERLADADPDMPAFDPAIIEYHQRAESLDWSDRDAVVAYQVGAWRINSGTAHAFDAEKIQNIAELNFDRTPNILTTFNHTTLGGGERWLGRLNEIAVPTLIIHGTEDPVLPYVHGLALKDAIRGSKMLTLEGTGHELHHEDWPRIIQAIKGQTS
43082..43690                       hydrolase; A5895_25515                                                               N/A                 MSLALFDFDGTITTRETMPDFVRRSVSRRRLLVGQLLLAPLVLGYKIGILSGTLIRRVIVRFAYSGIPASVLEAQGRDFAQSYLPNTLRGEAMQRIAWHKAQGHKVVVVSGGLEAYLEPWCDSHGVELICSSLQQSDGILTGRYEGRQCVLTEKARLVRERYDLATYPTIYAYGDTPEDLDMLAIATKQYYQWQEVGVAGGR
43748..44509                       ANT(3'') family aminoglycoside nucleotidyltransferase; A5895_25520                   N/A                 MRVAVTIEISNQLSEVLSVIERHLESTLLAVHLYGSAVDGGLKPYSDIDLLVTVAVKLDETTRRALLNDLMEASAFPGESETLRAIEVTLVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPAMIDIDLAILLTKAREHSVALVGPAAEEFFDPVPEQDLFEALRETLKLWNSQPDWAGDERNVVLTLSRIWYSAITGKIAPKDVAADWAIKRLPAQYQPVLLEAKQAYLGQKEDHLASRARFTWKNLFAL
44803..46062                       chloramphenicol efflux MFS transporter; A5895_25525                                  N/A                 MSSKNFSWRYSLAATVLLLSPFDLLASLGMDMYLPAVPFMPNALGTTASTIQLTLTTYLVMIGAGQLLFGPLSDRLGRRPVLLGGGLAYVVASMGLALTSSAEVFLGLRILQACGASACLVSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALVDMWLGWRAIFAFLGLGMIAASAAAWRFWPETRVQRVAGLQWSQLLLPVKCLNFWLYTLCYAAGMGSFFVFFSIAPGLMMGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLAITEIWALQSVLGFIAPMWLVGIGVATAVSVAPNGALRGFDHVAGTVTAVYFCLGGVLLGSIGTLIISLLPRNTAWPVVVYCLTLATVVLGLSCVSRVKGSRGQGEHDVVALQSAESTSNPNR
46155..46946                       ANT(3'') family aminoglycoside nucleotidyltransferase; A5895_25530                   N/A                 MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQPVILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK
47116..47448                       PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; A5895_25535; phage(gi311992758)     2.12e-11            MKNWLFLAIAIFGEVVATSALKSSHGFTKLVPSVVVVAGYGLAFYFLSLALKSIPVGIAYAVWAGLGIVLVAAIAWIFHGQKLDLWAFVGMGLIVSGVAVLNLLSKVSAH
complement(47713..48348)           PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; A5895_25540; phage(gi985761243)     8.19e-33            LATGKVLLKVPQVRGMEFYPSCIEKGMRSERALKLAIAEMYVKGVSTRRVSDIVEILCGTEVSSSQVSRLAKELDEEITSWKAQPVGQIQYLVLDATYESVRVGSHVVKQALLVAIGVDYSGNRHILDAEVANSEAEVNWRSFLEGLVRRGMHGLRMITSDDHSGLRAAIDAVFPGILWQRCQFHLQQNAHSYVTKKDEIPLIAADIRKVFN
complement(48628..49419)           dihydropteroate synthase; A5895_25545                                                N/A                 MSKIFGIVNITTDSFSDGGLYLDTDKAIEHALHLVEDGADVIDLGAASSNPDTTEVGVVEEIKRLKPVIKALKEKGISISVDTFKPEVQSFCIEQKVDFINDIQGFPYPEIYSGLAKSDCKLVLMHSVQRIGAATKVETNPEEVFTSMMEFFKERIAALVEAGVKRERIILDPGMGFFLGSNPETSILVLKRFPEIQEAFNLQVMIAVSRKSFLGKITGTDVKSRLAPTLAAEMYAYKKGADYLRTHDVKSLSDALKISKALG
complement(49510..49737)           hypothetical protein; A5895_25550                                                    N/A                 MFELCRINANQGLTAEIDWNYTSWSRRCRKILIGLVVRGAKTVVVRGKNRILTQNREKLEMTVPISFHNELKQKN
complement(49888..50133)           hypothetical protein; A5895_25555                                                    N/A                 MKIEIMEYNPDWTKNFEEEKIKLLHFFGSHAVAIEHIGSTAIPNQRAKPVIDIFIGVSPFAELPFISAFLMQRSITTLRQI
complement(50171..51034)           PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; A5895_25560; phage(gi971760361)     4.10e-10            MIPNSENKRVWFITGASKGLGYAFTCAALKAGDKVVAVARTIDNLAKLEETYQESLLPLNLDVTDREAVFSTVETAVKHFGRLDIVVNNAGIMTMGMIEELNESDARKLMDTNFFGALWVCQAVMPYLRSQRSGHIIQITSIGAIISGPMSGIYSASKFALEGMSEALAKEAEHFGVKLTMVEPGGYWTDLYTSMSYSNPLDSYGTLRDELAKQYSEDSVDSDPSLAAEALMKLVASNNPPLRLILGSMVYDLAMDTLKARMATWEEWEAVSRASEKAIPAPERYGV
complement(51180..51419)           macrolide transporter; A5895_25565                                                   N/A                 MAYVQESIAPEMMGKVFSLLMTAMTLSMPIGLLVAGPVVEVIGVNTWFFWSGVALIVNAVLCRILTRRYDKVTMKPQVD
51433..51546                       transposase; A5895_25570                                                             N/A                 INGHCCKVSDEAAFCLIQRPYISKTLLTRRISPRGSP
complement(51492..52194)           PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; A5895_25575; phage(gi985761246)     2.11e-07            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSRFTAGFSVMRNGKTAALVLAPFRSLPVAHGNLREGQWPLGVSVPGRRQPGPHCRFLSLLPSQQSCIPVSGNPQQREEVADPAIHQHGSARLWSRACSAQTRRPVPVRTPTDVPEQRDMRSWQTETDNRRHAGIIHEDGLRHHQRYGDACTTQRPGLSILLWSPGRNAPGKQSFNVA
complement(52241..53545)           PROPHAGE_Brucel_1330: transposase, putative; A5895_25580; phage(gi23501616)          1.16e-33            MLNTRVHQSEVSMATDTPRIPEQGVATLPDEAWERARRRAEIISPLAQSETVGHEAADMAAQALGLSRRQVYVLIRRARQGSGLVTDLVPGQSGGGKGKGRLPEPVERVIHELLQKRFLTKQKRSLAAFHREVTQVCKAQKLRVPARNTVALRIASLDPRKVIRRREGQDAARDLQGVGGEPPAVTAPLEQVQIDHTVIDLIVVDDRDRQPIGRPYLTLAIDVFTRCVLGMVVTLEAPSAVSVGLCLVHVACDKRPWLEGLNVEMDWQMSGKPLLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAVARVGVPAVVTRATSFLVDFLPILRRTLTRTGFVIDHIHYYADGHCCK
66822..66833                       attR                                                                                 N/A                 ATTCCTTTCAGA

#### region 2 ####
128996..129008                     attL                                                                                 N/A                 GGCGTTTTTCATT
129026..129514                     PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; A5895_26145; phage(gi209552461)     7.82e-64            MSAIISKCGMYRYRLERDVQPEGLVFGYFGVNGSTATATEDDHTVRKWIGFTKVNGGRRFIVGNAFAFRATDVRELATAVDPVGPENEIHLERIIRDADVLVPCWGSRTKLPKSLHVHLDRLLEQLVASGKPVLAFGVTGSGDPKHPLMLGYSTKLVPWGGK
129517..130014                     PHAGE_Klebsi_Matisse_NC_028750: hypothetical protein; A5895_26150; phage(gi100149)     5.80e-09            MSMLEARYFVAKISDAQAVLCDEELATLERLIRKVDDGRRANGKSSLTCVVVEEDWPNWQQTVDSVLSLADGKDNDWTNATPEQIKAFWVDDSVWKTLDGRDKWIEDLDLLVDGSPVASEWEPFGLESGQSVVIRGGWIEGNALSDDGVPLVQAFVAWKQGQDNH
130118..130381                     hypothetical protein; A5895_26155                                                    N/A                 MLTAKCIGCGCTDDHACVENGQPCHWLRVNRVEGIGVCSSCPDALNQFASTSQEQATGQDDYRNSPEWKDFSSRIGNALCGGRSKAK
130576..131508                     hypothetical protein; A5895_26160                                                    N/A                 MEQAIQSYLADDRQYQDRITAALSQVEEKGAEYEALCQQRAQLGIWQKIITFWQFRRDIAVIRSALKGHNSDLRYLRRGRDQLKEGLVSRAVKQAIDGSQILERITQAQDRLDAASRLHESNKRLVDMGQKALREISEASSSVSSAQTMEVLDLVTDNKGISVMSSMSNSSASSEIDDAKRAVKAFANALGDHRDIVGSLHHSMATEFIDLGMDFAGLNDGFDFGSVFSLFSLSSASSSLDKVESRVESLMPDLRRAASNSAAEYARVNEEFFGLKQQACCQVHELLVTNGIDVSVKRVESAVNSYRVGR
131582..132400                     PHAGE_Acidia_virus_NC_029316: AAA+ ATPase; A5895_26165; phage(gi1002166819)          1.31e-05            MSDITQQMDKLEIPIKLSFPVINVSTFELGRAESVFSDIAKKVGKHFIVMPFKKLPDPGTMKAMVDESKKSSKNGVVVFDTFFFDRQRANPETLPALKSSLTYLENEGINYIIAGKDVFNEEFVYHIDLPAMSNQEILKLLQTCEDNVKDGGVFESNERAVIANHALGLSHTQMKNVFTYSAYLKFKGEEYLGEIRKEKAHILRDVGLDVLEAIDIGNVGGLENLKEFLQIRKAGWDKDLPVKGVLLAGVPGGGKSLTAKAAAGVLGTALLQI
132448..133152                     PROPHAGE_Brucel_1330: transposase, putative; A5895_26170; phage(gi23502708)          1.98e-53            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
133217..133777                     PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; A5895_26175; phage(gi209901327)     1.13e-39            MALYGYARVSTSDQDLTLQTQILRAAGCEIIRAEKASGSGRTGRSELQLLLEFLRPGDTLMVTRVDRLARSIKDLQDIVYALNQQGVTLRATEQPVDTRSAAGKAFLDMLGVFAEFETNLRRERQMEGIAAAKARGVYRGRKPSIDPAVVYRLYTIEKMGATAIARQLGIGRASVYRALENYEQPA
133761..135425                     PHAGE_Pseudo_vB_PaeS_PM105_NC_028667: putative transposase A subunit; A5895_26180; phage(gi966198691)     1.84e-19            MSSRRSAIPSDSLLQLRQRLDRLPPKSPERANQIAATAQLYGISVTTVYRALHLVLKPRTAHRSDHGQPRILPPSELEHYCELIAALKLRTTNKSGRHLSTGRAIQLLEEHGVETVQGLIKSPKGLLRKQTVNRWLSRWRLDQPRLLREPPAVRFQAENSNDCWQFDMSPSDLKHIERPDWVDPARGEPTLMLFSVVDDRSGVAYQEYRCVYGEDAESALRFLFNAMAPKTRSDFPFQGRPKLLYLDNGPVAKNHVFQNVMQSLKVDWLTHTPAGKDGTRTTARSKGKVERPFRTVKEAHETLYHFHKPETELQANEWLWNYLSRYNAQRHRSEKHSRLEDWLANIGQEGVRDMCSWEQYCRFAREPESRKVGVDARITIDGTAWEVEPDMAGETVILLWGLFDEEMYVEFTGETWGPYYPVSGPVPLHRYRTFRRGKAAERADRIHALARQLNIPISALSGSDLRVVSDDTQQRIDALPHQPFDTRKFEYHFPTVIAAKLAIADDLAIPLARMSDEDRAFIDSILTETLNRSEVLARIRDYFRSRQSGEDHAG
136477..136489                     attR                                                                                 N/A                 GGCGTTTTTCATT

#### region 3 ####
130035..130048                     attL                                                                                 N/A                 GCGGCTATGGCCGC
complement(136572..137609)         PROPHAGE_Escher_EDL933: putative transposase; A5895_26190; phage(gi15803522)         3.17e-121           MPIIAAIPDEERQLMRKEAQQTHDKNHARRLIAMLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLPLLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIKDPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKHYLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVERWLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLFPGNQQGLAKVER
138218..139111                     transcriptional regulator SpvR; A5895_26195                                          N/A                 MDFLINKKLKIFITLMETGSFSIATSVLYITRTPLSRVISDLERELKQRLFIRKNGTLIPTEFAQTIYRKVKSHYIFLHALEQEIGPTGKTKQLEIIFDEIYPGSLKNLIISALTISGQKTNIMGRAVNSQIIEELCQTNNCIVISARNYFHRESLVCRTSVEGGVMLFIPKKFFLCGKPDINRLAGTPVLFHEGAKNFNLDTIYHFFEQTLGITNPAFSFDNVDLFSSLYRLQQGLAMLLIPVRVCRALGLSTDHALHIKGVALCTSLYYPTKKRETPDYRKAIKLIQQELKQSTF
139285..139449                     PHAGE_Salmon_SEN5_NC_028701: lysin; A5895_26200; phage(gi966201565)                  1.42e-17            MGINALAHATLLKKLNNGDYDGAANEFLKWDHASGQVVPGLTRRRSAERCLFLS
139623..140390                     virulence protein SpvA; A5895_26205                                                  N/A                 MNMNQTTSPALSQVETAIRVPAGNFAKYNYYSVFDIVRQTRKQFINANMSWPGSRGGKTWDLAMGQAQYIRCMFRENQLTRRVRGTLQQTPDNGTNLSSSAVGGIQGQAERRPDLATLMVVNDAINQQIPTLLPYHFPHDQVELSLLNTDVSLEDIISESSIDWPWFLSNSLTGDNSNYAMELASRLSPEQQTLPTEPDNSTATDLTSFYQTNLGLKTADYTPFEALNTFARQLAITVPPGGTVDCGYSACQPAV
140572..142347                     PHAGE_Pseudo_PaMx28_NC_028931: morphogenesis protein; A5895_26210; phage(gi971757078)     4.82e-06            MLILNGFSSATLALITPPFLPKGGKALSQSGPDGLASITLPLPISAERGFAPALALHYSSGGGNGPFGVGWSCATMSIARRTSHGVPQYNDSDEFLGPDGEVLVQTLSTGDAPNPVTCFAYGDVSFPQSYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASHTAQWLVEESVTPAGEHIYYSYLAENGDNVDLNGNEAGRDRSAMRYLSKVQYGNATPAADLYLWTSATPAVQWLFTLVFDYGERGVDPQVPPAFTAQNSWLARQDPFSLYNYGFEIRLHRLCRQVLMFHHFPDELGEADTLVSRLLLEYDENPILTQLCAARTLAYEGDGYRRAPVNNMMPPPPPPPMMGGNSSRPKSKWAIVEESKQIQALRYYSAQGYSVINKYLRGDDYPETQAKETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPETDHRVVYRGLKLDKPALSDVLKEYTTIGNIIIDKAFMSTSPDKAWINDTILNIYLEKGHKGRILGDVAHFKGEAEMLFPPNTKLKIESIVNCGSQDFASQLSKLRLSDDATADTNRIKRIINMRVLNS
142628..143353                     type III effector phosphothreonine lyase; A5895_26215                                N/A                 MPINRPNLNLNIPPLNIVAAYDGAEIPSTNKHLKNNFNSLHNQMRKMPVSHFKEALDVPDYSGMRQSGFFAMSQGFQLNNHGYDVFIHARRESPQSQGKFAGDKFHISVLRDMVPQAFQALSGLLFSEDSPVDKWKVTDMEKVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFIECLESRLSENGVISGQCPESDVHPENWKYLSYRNELRSGRDGGEMQRQALREEPFYRLMTE
143614..144264                     virulence protein SpvD; A5895_26220                                                  N/A                 MRVSGSASSQDIISRINSKNINNNDSNEVKRIKDALCIESKERILYPQNLSRDNLKQMARYVNNTYVHYSGNCVLLSACLHYNIHHRQDILSSKNTASPTVGLDSAIVDKIIFGHELNQSYCLNSIDEVEKEILNRYDIKRESSFIISAENYIAPIIGECRHDFNAVVICEYDKKPYVQFIDSWKTSNILPSLQEIKKHFSSSGEFYVRAYDEKHD
complement(144391..144815)         IS200/IS605 family transposase; A5895_26225                                          N/A                 LSNHHESLEGFLRKRHSVSKLVVHSLRQNTAASCLTGRLSLSYVMLLVRLRQSWSAKLSRWMVNKITSICRIRNWGSAWIISRYRRGFSVSRIPTCGCRAKPGCCGLVLTLPVAPVVPRKRLKHTCSDRIRRSAG
144872..145296                     PHAGE_Clostr_c_st_NC_007581: putative IS transposase (OrfB); A5895_26230; phage(gi80159731)     2.32e-12            MLRATKVCIYPTPEQAEHLNAQFGAVRFVYSKSLHIKKHAYQRHGVSLTPRKDIKPLLAVAKKFRKFRKYAWLKEYDSIALQQAVINLDVAFSNCFNPKLKARFPMFKRKHGKLLGKCWMVRSESRKSRLKHNCIVKLLGC
complement(145289..145849)         adenylate cyclase; A5895_26235                                                       N/A                 MLGANIFLDYDLSRDHARAGFGGEYWRDFLKLSANAYVGLTGWKTSPDVEDYEERPASGWDLRAEGYLPSYPQLGAKMVYEQYYGNEVGLFGKDERQKNPHALTAGVSWTPVPLLKLSAEQRAGKAGEHDTRFGAEASYRIGDSLRSQLDPDAVGALRSLAGSRYDLTDRNNDIILEYRKQEVTCQ
146005..146292                     hypothetical protein; A5895_26240                                                    N/A                 MAVIVTFPAGQRDRRHVKLVAGLQVVKAAGESAEPVQFFQLWDGQAVRLRHRLPLFQGIRHGPDPGEGGIPVGRERALPDPGRDVRPGRHGRRER
complement(146569..147054)         hypothetical protein; A5895_26245                                                    N/A                 MLIIVSDCQFTRLALTRLLAHLDPVNMSVARWLQTAPPAGSHVLLAASPGMLASLVPACHHARTSLSLKLALLGSGGQAVFLNTLGLRPDCLLPRTASATQLKAAVSSWLRRARGWRQATTESLSLRERQALCATLAGLSARTAPGSASAPKPFTAIAAAR
complement(147048..147557)         CaiF/GrlA family transcriptional regulator; A5895_26250                              N/A                 MRTGVISMNQPLLFRTVAGRQSNHEGFYMPPGIRHLGTLSLYRAVAWWGLFLGREFTRDDVSEAFSIEPRRASGILNYICNRHNDDDICFDSRLHPVRGGRAQLVVRIRAVESRPDTIRRQRTDRPGGKVSDRQYDRQMAHWLLSRPAGGDTAKLAAWQAACPVREASC
complement(147561..148274)         diguanylate phosphodiesterase; A5895_26255                                           N/A                 MHFSAFRLQQAIRNREFTPFYQPIVCATGGEVVGCEMLARWLHPQKGLLSAGNFIPAIEATGLGGALLRGLADEVCGDGQDLARSAGRRLMMTLNLSLSLVMTPLFRPHLLALSIRLEQAGMTPVFEITEREDIRAFPQAAVFRQLAAGGLRFAVDDFGTGHAGPASTVADRMIARTVSLARCGARVIAEGIETPAQAARLRDAGGDYLQGWHCGAPMPFGLFHFRLTQKSQPAFG
complement(148283..149065)         PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; A5895_26260; phage(gi764159894)     9.08e-07            MSQPPLPAVCTQAASALLPVAIDYPAALALRQMAMQHDDYPKYLLAPEVSALLHYVPDLHRRMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRAEKAARTAGRMPSGSQPHRLVPLSDNQYVSELQMMVATLKIPLERRNRRTGRTEKARLWEITDRTVRTWIGEAVEAAAADDVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKVFALDVAARHRVQFQMPGADAVAMLKGGS
complement(149100..149621)         cytoplasmic protein; A5895_26265                                                     N/A                 MTRSRICPDTESTGLSPASDALPVRETTEQFAQVFFGKSVSLLTPEERFTTVYAGSRDIPADLHPASWFPADTWFRNELRACAAYVGRRQGWPLYHASEAERLRALYPLRLATPATDPGKQLLTRTALLKAGYSRATIAAMTPVAERQNRHSGDWYPLYRVQTETRDDSGEKT
complement(149618..149908)         cytoplasmic protein; A5895_26270                                                     N/A                 MRVSEQVLLSSLRQGGCVRSFWRRSARLAGTPSPIVPDGLVLETPGERGDTPLCHVDFAVVQKWLVCEETWTQTLGGTEFGGTVWRLRTDRENTTS
complement(149910..150215)         plasmid maintenance protein CcdB; A5895_26275                                        N/A                 MQFKVYTCKRESRYRLFVDVQSDIIDTPGRRMAVPLVSARLLSEKVPRDLYPVMHIGDEPYRLLTTDMTSVPATVIGEEVADLSLRENDIKNAINLMFRGI
complement(150217..150435)         plasmid maintenance protein CcdA; A5895_26280                                        N/A                 MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWQEENREGMAEVASFIEANGSFADDNRNW
151144..151632                     hypothetical protein; A5895_26285                                                    N/A                 MNTALLAPFISIALSGVGVYTHYYFKKYQASMDQCQKVHKMMVDTLLGTKRLFSRSAPAQALKSELRIMQQQLSQEAQKLDKMTIRLPLKRLQREQRHILRHADWLLHYLDSHLADNEGKFFLFLHDLAMDSDDKVLDFLTSLHDTKRFRNRRLQTGSTTCP
complement(151766..151996)         hypothetical protein; A5895_26290                                                    N/A                 MNMTNMPAEPLIFQSGTQSAGLERVNIYFWIFRQFMEKELTKPLACLVYTNLKTARTDSVSLQSVGKRFEASFEN
152116..152305                     hypothetical protein; A5895_26295                                                    N/A                 MDAEFQKQGLTDLTETDLQAVVTPGETLRLLPTLARLLHVLREKPEAFSLSAASYEEDTSSALA
152805..153509                     PROPHAGE_Brucel_1330: transposase, putative; A5895_26300; phage(gi23502708)          1.98e-53            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
160686..160699                     attR                                                                                 N/A                 GCGGCTATGGCCGC

#### region 4 ####
166794..166809                     attL                                                                                 N/A                 TAATTATGATAATTAC
168128..169066                     PHAGE_Rhodoc_ReqiDocB7_NC_023706: tyrosine recombinase/integrase; A5895_26400; phage(gi593775993)     6.19e-13            MRGELLPSSSSLRNIQDNPAVAYLVSLGSKRSRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAGKAPATINTYLSALKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIRSLFFTCESDSSAKGLRDAAILGVLLGCGLRRSEIVALDMESMIYKDRALKVLGKGNKERMAYVPGGAWKRLDKWVEEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEKFAPHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRASQRLDIAD
169071..169940                     PHAGE_Entero_186_NC_001317: Orf81; A5895_26405; phage(gi9634093)                     2.80e-29            MNDEELELARAEAMKADRCFSKGRLRDEFRMKPKPGVEPVSFYKNGYGGQFGVYRIADCQPMRRRGCSPASQKQIRAQSILSVKARMRSNLAKASVLAQRWVALEPLVLDTETTGLGERDQVIELAVTDIRGAVLLCTRLRPTVEIDPQAMGVHGITEAELSNEPTWTQVAPALARLLSGRHLVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLCAMKLAADAFGSTNRHGTISLADATCEAGVSWKGRAHSAATDAVATADLVTEIAKVQRDLVVQLQELQSKGNLE
169937..170428                     hypothetical protein; A5895_26410                                                    N/A                 MTEQSYGDSIKFFSDWQKDPAKRTGLNVQHTLTRGEYPTVSIEIAPIRASGSSPDWKSKITVQLTRGELTAFCSVLFGLRSKAEGSYHGDSKNKSFAVYNNGKAGVAIILSERGNQLQNFINDDDRMELAVFAVRQLSNAWKVTPSDAIALLRQSAWMDRNLS
170745..171620                     DNA replication terminus site-binding protein; A5895_26415                           N/A                 MAKNFISEQFSAMCRDLTNLSSLIKRLPPRYAKVAAIPPTRKGMENEPVNKIVVTEQTGREALELAAHSYRDLHINPDYSQKSARRTVGVLWFSPSRIGVADEIAATVERINAAKAGIEEFIISTYPTRQERFEALRADCPGVMTLHLYRQIRCYTNGDIDSIRFTWQRKDSLKKPVKEELLQRIREELERSGPDYQLPLEQLIQKIASTPEPYLRERREVKVQPVANVMAAGVLKTVTAPMPLIVLQDKEVQLKLLRSFDASEQRKTRSDKAASEILGTFGGVTIESFPG
171708..171723                     attR                                                                                 N/A                 TAATTATGATAATTAC
171773..172813                     KfrA protein; A5895_26420                                                            N/A                 MARKLVEFDDVAAAAQKLKDAGKRPTVIAIRDIIGKGSFTTISTYLKQWSEEHSLDEEPVEVVLPESVMSDAELFLQKIYTVAKASADEQLERERELLRQKELEYQEDMQQAVDMANDATERAELLEEQLEALTNKKTELDAALGKAENSLSLKSAELERSLADIDKLEKRIVELEGKLEAKAADLTRAQDHLEQAESENRSLSQKLATTEGELEVQKGKSIEQTEKLRAAQEQNTSLKEQLENVQAKLAQSQDSLATAKAHGESAERECQRLSGEVEKLDAKLSSAEAEARALVQDKGMMAGQLQEKDQQAKSLEQRLNDALTKISGLEQELVKAGKGGKKKEEN
172813..173091                     hypothetical protein; A5895_26425                                                    N/A                 MARKAKYSEEWRHRAAALQTKIEEAMTLATSSIGDYRWLHRLHSWVTEVAQGKAPDWWTDLDCEVSLPREEKRISTFLSTQKKRITLQMCLS
complement(173379..173642)         hypothetical protein; A5895_26430                                                    N/A                 MGSCAAPSAKGDDKFITTDYLQQCPFDHLDLVSLLFGRKHFTRIGASKMRIKNPHVCTAHKGVERIENIFGKRPVLGIHRLGNIGEP
173633..174337                     PROPHAGE_Brucel_1330: transposase, putative; A5895_26435; phage(gi23502708)          2.00e-53            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWDWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
174391..174906                     PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; A5895_26440; phage(gi431811050)     4.09e-77            FGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLNLFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPAEKLT
complement(174988..175962)         PHAGE_Entero_N15_NC_001901: ParB; A5895_26445; phage(gi9630491)                      1.02e-13            MSNERRKTIGRQLNTQASMVEMTDTQRSQVFTLKTGRKITFRFVRVPASDVESKTFVNQETNGRDQLALTRESLKSIIQTIKFQQFFPCIGIQQGERIEILDGSRRRASAIYIRTGLDVMVTNELLSADEARHLAKDIQTAKEHNLREIGLRLMALKESGFNQKEIAELEGLSQAKVTRALQAAAVPQELISLFPVQSELSFSDYKILLEVNEKLSEKGLTSEGLIQSVSDQHDAILSDYERPDDEQKSSILKLISQASQALIAPPPKEKSVISALWTFEEKDKFARKRVKGRTLTYEFSRMSKVVQDELDKAINEVLERNLSQ
complement(175962..177167)         PHAGE_Entero_N15_NC_001901: plasmid partition protein SopA; A5895_26450; phage(gi9630492)     1.57e-06            MENIEQLRKVATRAGKLLTSLSESIRQQKEELKLTEFYQEYSKAALYKLPKLSKGSVEYAVAEMEASGYIFKKKPSGNTMKYAMTIQNVIDLYFHRKVPKYRDRFDKAFTIFVCNLKGGGSKTVSTASLSHAFRAHPQLLFEDLRILAIDFDPQASLTMFLSHENSVGLVENTAAQAMLQNVSREELLSDFIVSSIIPGVDVIPASIDDAFLAEGWKGLCEEHLPGQNIHAVLKENIIDKLRYDYDFIFLDSGPHLDAFLKNCIGAADLMLTPLPPATVDFHSSLKFVASLPALIDSIEQDGHTCNLIGNVGFMSKILNKSDHKICHSQAKEVFGADMLDMVLPRLDGFERCGETFDTVISANPATYDGSTEALKSAKSAAEDFAKAVFDRIEFIRTNGGM
177582..178523                     PROPHAGE_Escher_MG1655: predicted transposase; A5895_26455; phage(gi16131287)        1.28e-110           MKKKNTTPTPHDATFRQFLTQPDIARDFMELHLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLKTTAGDGYIHVLVEHQSTPDKHMAFRLIRYAVAAMQRHLEAGHKKLPLVIPVLFYTGKRSPYPYSTRWLDEFDDTALADKLYSSAFPLVDVTVIPDDEIAGHRSMAALTLLQKHIHQRDLAELVDRLAPILLAGYLSSSQVISLVHYIVQAGETSDAEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNCIDRNTVMKMTGLTEDDLAQIRH
complement(178520..179121)         hypothetical protein; A5895_26460                                                    N/A                 VTLTEKSGHLAWCALVALALARQDGGVLSPAQENLFLTRWLATALKQRRFSRDVTPDIEWLLKQGRQMGVSAKLASKLNYLWRSCTGELSEQNDLFRLTYALETAKDMHWNYRLLSDREWSGRNAVALSAGVNGIYLSRAKLDVGFNDSGRQINSLTARLTGNVAGVMKLFDRCGWQSLMPPCPTSIRWPGRECQKRGIAG
complement(179178..179513)         hypothetical protein; A5895_26465                                                    N/A                 MENMLKTMREHFPVRTVVIEQSLDMFGVKRNEDGTLLFPRHSDKRFPVARIRKRLAAYGWRGERLNKEVARIVAGPDILPERRDYSIIFPYGWEKKQLTREMRRMFLRKTG
complement(179697..180080)         PHAGE_Entero_N15_NC_001901: gp41; A5895_26470; phage(gi9630507)                      2.03e-06            MYKSPYGGKYGVWRLADCVPMRAKRPQTEKQRLASTRLGLQARMKSERGRFAMLAHTWLALGPVFLDTETTGLDAGAQALEIGLVNARGERIFETRLKPTVGIDPAAAAVQIVTEPYRFPVLSVRLA
complement(180199..181314)         PHAGE_Strept_DT1_NC_002072: putative tail component protein; A5895_26475; phage(gi29165636)     6.31e-05            MRPATYEPEQIIEAGLALQAEGRNITGFALRNQVGGGNPTRLRQIWDEYQASQSTVVTEPVAELPVEVAEEVKAVSAALSERITQLATELNDKAVRAAERRVAEVTRAAGEQTAQAERELADAAQTVDDLEEKLDELQDRYDSLTLALESERSLRQQHDVEMAQLKERLAAAEENTRQREERYQEQKTVLQDALNAEQAQHKNTREDLQKRLEQISAEANARTEELKSERDKVNTLLTRLESQENALASERQQHLATRETLQQRLEQAIADTQARAGEIALERDRVSSLTARLESQEKASSEQLVRMGSEIASLTERCTQLENQRDDARLETMGEKETVAALRGEAEALKRQNQSLMAALSGNKQTGGQNA
