gi|00000000|ref|CP019581.1|  Lactobacillus helveticus strain LH5, complete genome. 2133354, gc%: 36.81%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1098670..1098681                   attL                                                                                 N/A                 TTTTATTTTTTT
complement(1102794..1103669)       PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; LH5_01129; phage(gi100148)       1.12e-95            LactobacillushelveticusMKVRKAIIPAAGLGTRFLPATKALPKEMLPIVDKPTIQFIVEEAKASGIEDILIVTGKNKRAIENHFDSNPELEQDLEKTGKSGLLKLTQEITDLGVNLYYTRQPYPAGLGDAVYRARSFVAGEPFVIMLGDDLMKDKVPLTKQLINDYDKTHASTIAVMKVPHKEVSKYGVIAPDGNIAPDLYNVKNFVEKPAVDKAPSDLAIIGRYLLTPEIFDILEHQKSGRGGEIQLTDAIDTMNKTQRVFAHVFKGERFDVGNKEGYLETSIQYGLIHPETRDALRKYIKELGKKL
complement(1103800..1104729)       hypothetical protein; LH5_01130                                                      N/A                 LactobacillushelveticusMPILEFRDYVVDDMKYIKNKNFRSKKDDIDLKPKVDVKLEADVNFCTNCGTDIRNVQVEVKQPVQEAAQENAMPTRKSQRVNSNQDQSQNASLGQDFAQSMRTFDVHNMWEWFVNSWKHPFAEQNADKWYGWITLLAEDILVGLGLFFGAQRATSSVLGSDIASSTSNFTFGMAIELIFFLLVAQVAWIGSAYLAYKVIYNKNKDFLQLTNHIVQTSNLSVIFIVIFLIFMILAGPSGVVMASLMLWLSAIFFGMVLTVVVLGDPNPVHDNFYGYLLFIVLQAITGVIIFMLISSMIIGQIGSSFLNLI
complement(1104729..1104968)       hypothetical protein; LH5_01131                                                      N/A                 LactobacillushelveticusMTVSENNHRIQTKYQDMLFRLVMLNKSDFKKELANNDKKTWLDNLNQMIDKKYQRSDSYYVVSDNNIVFKSSVERGSIA
complement(1105276..1106247)       PROPHAGE_Escher_CFT073: transposase; LH5_01132; phage(gi26246249)                    8.08e-38            LactobacillushelveticusMIGLNKKTTYRKKNSFMNDFTKNMAQALFNQDKVNDFLRKEIQTAVNQLLEAELTAFLGYDPYAKSGWNSGNSRNGIYYRKVDTQFGQIEIQVPRDRNGEFHQHTLPDYKQHSDVLESMIIKLYAKGVTTREIADLIEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDRFFCVYLDATYLPLCRETFEREAVYIAIGIRPNGHKEVIDYCIAPSENVEVWTEMLQNMRSRGLKQVELFLSDGVVGMKTALAKTYPKAHFQRCLVHVMRNICNKVRVDDRETIMNDFKQRFIGSLTRQPLYKLFMHSMTNGTRHTIMSLGI
complement(1106437..1106652)       hypothetical protein; LH5_01133                                                      N/A                 LactobacillushelveticusMKKKFFNPELNQYDYYTEVWLPETVTVKDEKDILVINHYWKDKDGELWGDFDNPMENVYRSFVEYRQKKGF
complement(1107408..1107740)       PHAGE_Burkho_ST79_NC_021343: HicB protein; LH5_01134; phage(gi509141623)             6.95e-20            LactobacillushelveticusMKMLHYKDYYGTVNISEEDNVLYGKVIGIKGLLSYEGETVEELKQDFHNVVDEYIADCKRNNIKPQVSYKGTFNVRITPELHKDLVEYAEANNESLNSAVTTAIERLVLR
complement(1107737..1107988)       PHAGE_Burkho_ST79_NC_021343: HicA protein; LH5_01135; phage(gi509141624)             3.76e-05            LactobacillushelveticusMGHKQTIRKLKSRSNSITFSELASLLESLGFHQDNKGRTSGSRVKFLNKNGVPIYLHKPHPRKTLLAYQVKEVVEILKEENIL
1108122..1108146                   attL                                                                                 N/A                 CGCAAATTGCAATAATAAATTGAAC
complement(1108155..1108916)       PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; LH5_01136; phage(gi588498272)     6.77e-34            LactobacillushelveticusMRYVHKHFFKDGWSLDVCSNRATAVGAFSSRDVVCTKTLYNYVDQGLLDIHNYDLPEKLKRNTKLYRIRKNKKKLGRSIEERPKEINKRNEFGPWECDLVLGHKSKDDEVLLALSERMSREFLILRIPDKTSVSVMQAFKELQRQYSEHWNDIFKTITTDNGSEFADLSNLEKASNTLVYYAHPYTSCDKGTVERHNGLIRRFIPKGEAIANYSLQDIINIETWCNSLPRKILAYHTPDEIFERELDLIYQAA
1109163..1109187                   attR                                                                                 N/A                 CGCAAATTGCAATAATAAATTGAAC
complement(1109213..1110235)       PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; LH5_01137; phage(gi588498272)     1.87e-43            LactobacillushelveticusMDSLHSTMNQHVKGKHLSFEERVIIQTRLKDGCSIRAIARKLGSPSTISYEVRRGTVSLYHGKQKRYKADQGQSVYQINRCHCGRKSDFLKKAGFINYVIKHFFEDGWSLDVCANRSLATGEFSHYQTVCTRTLYNYVDQGLMTIKNYNLPEKLKRNTKLHHVRQNKKKLGRSIEERPKEIEQRSEFGHWECDLVLGHKTKDDQVLLTLSERMSREFLIIRIPDKTSASVMQAFQMLQKQYSEHWNDIFKTITTDNGSEFADLANLEQVSKTLIYYAHPYTSCDKGTVERHNGLIRRFIPKGDCINNYSLQQIMILKPGATLCPERSWHITRQMKSLREN
1124672..1124683                   attR                                                                                 N/A                 TTTTATTTTTTT

#### region 2 ####
1837245..1837475                   PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; LH5_01890; phage(gi100027)        8.68e-06            LactobacillushelveticusMNFMMIDLDKKLTPYQWVMAILSIISIFLIILDFAAVISINQPTSKWFWINCAIVIFFAIDYFYHFYKADDKKTLF
1837453..1838061                   PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; LH5_01891; phage(gi100027)        3.57e-27            LactobacillushelveticusMIKKLYFKKHIYDLLSIIPIGLLFVGLNVFNLSGLVSDLRLLRLIRLAGLMGKLKIIFHNNGLLYVVFFTITFLLVGAEAFAITEHVSLDTAFWWALSTASTVGYDAIFGKTIPPHSIVGKFITLVMMLLGIGIVGMLTSSITSYLMRKTNGANTLHTHDDIELILRKLDDLEKQNKDLADQNKQMQAEIQSLKKGRDENEV
1838102..1838731                   Ribosomal RNA small subunit methyltransferase C; LH5_01892                           N/A                 LactobacillushelveticusMSAEKNQMYFATDPMTAHDEHVIDYHVDNVDLKFTTDAGVFSKMRVDYGSGVLIKAMKDATFPQENILDVGTGYGPIGLFAAKFWPSQTVDMVDVNGRGLNLAKQNAQVNHISNVNIYSSDCYAQVDNKYGLVLTNPPIRAGKKVVSEIIAGASDHLVDQGVLLVVIKKKQGEPSARKLMTATYGNCEILTRDKGYYILKSVKRDNNAV
1838721..1839227                   PHAGE_Edward_KF_1_NC_019420: hypothetical protein; LH5_01893; phage(gi414090343)     2.99e-06            LactobacillushelveticusMLSSADKKKYMELAIDQAKEAEKQGEVPIGAVVVDSEGKVIGTGYNRRELDEDSTQHAEMIAIKEACHNLGMWRLIDCSLFVTLEPCPMCAGAIINSRIKDVYFGALDPKAGACGSVVDLFEVEKFNHHPHSIRGLYRDQCAQMLKDFFRAIREKQKAEKLAKKAENN
1839423..1841210                   PHAGE_Clostr_phiCTP1_NC_014457: putative DNA polymerase III; LH5_01894; phage(gi304360727)     1.16e-54            LactobacillushelveticusMAYQALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTNLQDGEPCNECANCIAAYKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYQDALEITGFAAKENIEKILLALLEKNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDDRQGTFLSEDFVQKVKDIPTKIFYRLITLANKALNDLRYTNQQQIPLEVFLVEAGSKQEEQAAQSSVAPVQAAPAKVNTDMQAELAALKKQVVDLTQQISKLSNKPMLAKDQVFHLDTAVPKTAPKIAKKAIVKEVKKSPRKIKKTTAENRKQVYHVLENATKEDLTTIKNVWPDLQSVLEVSEKALLDVLEPVAASPDQVVMKCKYTLWFENASDGDLLDKLTDLIEKFAKHSYGIVLVPDDDWLAVRKEFVESHKEELLAKKKQQIESKGSKENSEIVNKAKDLFGDAVTIKD
1841224..1841559                   Nucleoid-associated protein; LH5_01895                                               N/A                 LactobacillushelveticusMSRRPNFGGMGMGGMNMQQMMKQAKKLQAQMAQEQENITTQEFTGKSADDLVVATFTGDRKLKDIKIDKEAIDPDDPDMLQDLVIDAVNKGLSQIDEATQASLGKYTKGLM
1841560..1842159                   Recombination protein RecR; LH5_01896                                                N/A                 LactobacillushelveticusMQYPLPIAHLIDAYMRLPGVGEKTATRLAFYTMDMPEKDVEDFSKALIQVKNDIHQCPICGNITEKEVCDICSNPNRDQTTIMIVEQPKDLMAFEEMGEYDGLYHVLHGVLSPMDGIGPEEINIKSLITRLQKNDDVKEVILALNSTPEGESTAMYISKLIKPAGIKVTRLAAGLSVGSDIEYANSITLKRAVQGRTAL
1842159..1842398                   hypothetical protein; LH5_01897                                                      N/A                 LactobacillushelveticusMARKKKNKIKELGDQKLVTEIEKLQNQLALEQDLDQNTLDLSDDNYIQDRILKAKYTFLYNEARHRGTRFSGITNAITQ
1842502..1843140                   PHAGE_Pseudo_EL_NC_007623: putative thymidylate kinase; LH5_01898; phage(gi82701134)     7.66e-36            LactobacillushelveticusMRGYFVSFEGPDGAGKSTVLKEVLDQIGPKLKPQYLVTREPGGSKIAEKIRDIILDPANDKMDAKTEALLYAAARSQHVEEIIRPALSEGKIVFSDRFVDSSLAYQGEGRDLGIEEVKQINDFATGKLDPDLTFFLDIAPEIGLSRIQKLRPGQEDRLEQENITFHKKVYNGFLKVKDLYPDRFVTIDATQPIEDVVNQVIATLEKRLSEIF
1843152..1843472                   hypothetical protein; LH5_01899                                                      N/A                 LactobacillushelveticusMKLVIAIVQKEDSNNLQRAFVKSNFRATKLATSGGFLSQGNTTFLVGCKDEEVDDVLKVIKKESRAREEIATPHMISTGYEITQLLKVTVGGAICFVVPVDKFKRF
1843473..1844330                   PHAGE_Clostr_phiCTP1_NC_014457: putative DNA polymerase III; LH5_01900; phage(gi304360727)     2.92e-07            LactobacillushelveticusMIDISNRGTKQAEFFKRAYQQKKLAHSYLFVDSDETRALNTAYWLACLFNCTGENKPDGTCQNCKQILSGNHPDVLLVEPEGKQTLGIDQVRPLKEELAKSPVESSRRFFFINEAQKMTLSAANGLLNLLEEPIAPVVTILITNNSDQILPTVRSRTQIINFDNGEKPTGKTALLLENGFSKNEIEELGNLDKLDQSIKYFYQEMLEHNSLALVSAHKLSESAKLVSEQRYILVKLKLLAEHDLTDSLKMSIAARMLDNLVEIDKMRLSNVNFRNSLDYLALNWK

#### region 3 ####
1875944..1875955                   attL                                                                                 N/A                 AACGCTTAAGCT
1883706..1888709                   PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; LH5_01943; phage(gi100269)       2.60e-10            LactobacillushelveticusMRNSTAPNGNRNFSFVFKAKGRLEDIETQKRARTIINVRKKWVAAAIIALASGSTVFLSQNTAEAATNDPGASDVQVKVVQQDQKQDQNSTANAAVSNSDSAKTQTNATDQTQNSTVVSGDSTTANSKTSQTSNAQTTSTTTNSVDPNQEQQPANQADHVKGNVQSAWDQGYRGQGTVVAVIDSGADPTHKDFQTMPEDPKLSKDDMQAKIAKQGYGKYVNEKFPYVYNYADRDNDYITSDDINANDSPHGQHVSGIIAADGKPDGNKEYVVGVAPEAQLMQLRVFGQFSDEKTDDVAKAIYDATNLGADVIQMSLGQGVADQQLTNIEQKAVQYAIDHGVFVSISASNNGNSASVDNPSKVKDQGYQSGSQAGNYEPLNSSTVANPGVSKNALTVAAETSDTGDLSDMAYFSSWGPAQGYTLKPDLSAPGYQVVSTVNHDQYQTMSGTSMAGPFAAASAALVIQRLKQTNPELKGAQLVAAAKAMLMNTAKPQTQLGYTTPVSPRRQGAGQIDVGAATATPVYVTTDDGTSSVSLHQVGESTKFTLTFHNLTDQSQTYTFDDYGGGYTEQRDTTTGVFHDVQLAGARVNGEHSFTLAPKEERQVSYSLDLTGLKKNQLVEGFLRFTNANNASTVSVPYLAYYGDLTSENVFDQNANEEHPDIQGNRLVNEQNYPRGIADQESLKELVNVDGNYNWQEVAKLYESGKVAFSPNDNQKSDLLKPYVYLKQNVKDLKVEILDAQGNVVRVVSDVQGVDKSYDEDGVTKDTSLSVSMRDNPDALEWDGKVYNSKTGKMETAKDGNYTYHLVATLWNKGPHQVQTADFPVVVDTVAPTLSNVKYDAASHTLSGEYQDAGAGFTNYSYATVTVNDKVFGYKLSDGGSGFDNAEKTKGHFSFVLGQDALSALTAAANKVTVALSDVADNTSLATVNVAGDHDSETGVSVWNAVNGLAFDQKSPNYDAATKTYTLVGGANHDFYLNGKLVQVQDGKYQVPVSVNTTKFVFSTDPEGQHVLKDLSTVTAKAFFNWQKTDTFDGNFGVTISSVKTNNPNDTVVQAVVTKGKNVKAYAMDYFTGKVYTGEVKDGIATFHVHTSINKDATTGVYRRALLTGWTEVDGPSFNDKQETSRDGVSSSNHLGVFYFADAANRPVYTDRNALGVEAKDEAAKLDSFCPGAYPGHAPSALTTRTDPNPDIHFDYMNDNDTTRFGQNAVTHGYYDPSTQKFTVTGKVDDNVASLTVLGDNSNENAPENQVKLGNDGKFSFTVTANRTGQRPIAYIYKTKDGQRVHGTLNLILDTVAPSLEVNQVNGDELELWTNNPKFTLSGKVNDNLDGYRLFVNGNNIYREFLNSGYNQVAGLNTDTEFTNPYGAHDFEEVENLNDNNDQPTTHVFTVYVVDQVGNKVEKKLTVHFDPNYVAPEEVPNTDTSDTSNSSNTSDTLENPSSTTTVENPVTDVSTVQPKGETLTGKSFNLLHDAYIYNKDGQVVLSTDTNKSSLLKKGQRITALDNGKTVVINGVQYYRVSDNQFVKVANTILQAGKRLQLKHNAHLYDKNGKVVKRNGKPVLLRKGRWISALNNADKYVINGKTFYKLANGEFVKVTNTKLQKPKALKLTHNGFVYDENGKRVKKSKVLKKGQTILAENNAEKFHIKGKAYYKVNGHFVKVANTL
1889026..1889883                   Transposase DDE domain protein; LH5_01944                                            N/A                 LactobacillushelveticusMNCLKLKRFSHHLQVSFTRLNNICRSWYKLYAPNSLKHRRNTDQIKLSDSSILAMLIWQAELGIESQRRFCRFFVGLSHSRFNRRARQLLLLIYLIRHTLNQEVDLSGKILIIDSFPVSVCQPVRNYRVKIFHDIADIGYKATKKVYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETVELMNNTHPTNHYLLGDEGYLGKDLAAKLKHMGYVLWTPYRKNMQGAKKHNNHQLMAVRRTIESDFALLSYYNAENNRARSLAGFQERLEVAVLAYNMAYCLERFN
1889953..1890291                   hypothetical protein; LH5_01945                                                      N/A                 LactobacillushelveticusMNLSRDHMMRTIETIAFKTNQAFPIKTKRPRTNAKYQNLSPKFIDPNHWEKYVNQDISKNSKVIAEIKKNNEKIIDQYLKNAQMDFNEFTANPREQLKDFVANCNNKLNTFS
complement(1890288..1890887)       PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; LH5_01946; phage(gi588498272)     1.86e-32            LactobacillushelveticusMPEKLKRNTKLHRIRKNKKKLGRSIEERPKEINKRNEFGHWECDLVLGHKSKDDEVLLALSERMSREFLILRIPDKTSVSVMQAFKELQRQYSEHWNDIFKTITTDNGSEFADLSNLEKASNTLVYYAHPYTSCDKGTVERHNGLIRRFIPKGEAIANYSLQDIINIETWCNSLPRKILAYHTPDEIFERELDLIYQAA
complement(1890905..1891339)       PHAGE_Staphy_phiPV83_NC_002486: transposase; LH5_01947; phage(gi9635740)             1.56e-07            LactobacillushelveticusMDSLHSTMNQHIKGKHLSFEERVIIQLRLKDGYSLRAIARELNCSPSTISYEVKRGTVELYHGKVKRYKATQGHDAYQAHRKNCGRKSDFLRKTQFMRYVHTSISLKTAGRLMCAVIVPLLLAHLAAEMLSVLRLFTIMSTKVY
1891364..1892026                   PHAGE_Strept_315.6_NC_004589: putative integrase; LH5_01948; phage(gi28876488)       6.34e-42            LactobacillushelveticusMVTTFYQTGPNGLFIFYQVFNLILQSASKNENIKIYTFFRLLAYSGMRKGEALALKWSDIDFTSNTISINKTVSIGNKHRVVVNNTTKTKRNRAISMDARTMQLLKEWRFQQRQDLLRLGFNPFDKEQVVFQNFDNEVVRPNLVAVWNKRICDKNGLRRIKIHGFRHTHASLLFDAGVPMEDVKQRLGHASIQTTMDIYTHVTKDKQDKTALSFAQYMEN
1892263..1892547                   PHAGE_Bacill_0305phi8_36_NC_009760: GroES; LH5_01949; phage(gi156564025)             1.89e-18            LactobacillushelveticusMLQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAIAK
1892601..1894229                   PHAGE_Cellul_phi14:2_NC_021806: chaperonin GroEL; LH5_01950; phage(gi526178751)      1.82e-90            LactobacillushelveticusMAKDIKFSENARRSLLKGVDKLADTVKTTIGPKGRNVVLEQSYGNPDITNDGVTIAKSIELKDRYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAIVREGMKNVTAGANPVGIRRGIEKATKAAVDELHKISHKVESKDQIANVAAVSSASKEVGALIADAMEKVGHDGVITIEDSRGINTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQQGKSLLIIADDVTGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLQDIAALTGGTVITEDLGLELKDTKIDQLGQARRITVTKDSTTIVDGAGSKEAIDERVDTIRKQIEDSTSDFDKKKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALVNVEKAVREVKGETTDEQTGINIVLRALSAPVRQIAENAGKDGSVILDKLEHQENEIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAVVAEIPEPKPAAPQGGAGAGAPMGM
complement(1894326..1895618)       Bacterial extracellular solute-binding protein; LH5_01951                            N/A                 LactobacillushelveticusMTKTKKNILYLSVLFLLITITALVRYKSWQEDHVLTVGIYTGSSWDVPNNHQYQAFDYAIKQFKKKHPHVQIKYENEIQKSDYRNWLSEKIVQGKAPDLMIVPDNLFNLLAHNGAFKDLSGFMAEDKISPDRFYSVALNSSNLNDHQYALPFQANPQFMVMNKDLLLRNKLAILPFNWSPAELKKLCHQLALIKSKDPDLGITSEYKWNNALLAYNYKLSKSKDNPIQLTNNAAIKGFNLIEYLQNVGHTRKVDSQLFDRGKVAFTPISLAKYRTYTSYPYYVTNEKSFTWSCLQMPHIKKAKATQVDISMFAISSKARNPKLAWKFLKTLCINKKVQQKAMEVNKGCSVLPQVVLNKKTQKILNQNSQGSLSTTKLNAIMNNGWNQPKFRNWGEVYSILDHSIINALDTNTLDKQIFYIQQQANSKLKN
complement(1895618..1895869)       PHAGE_Pseudo_F10_NC_007805: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; LH5_01952; phage(gi148912803)     2.32e-05            LactobacillushelveticusMAQSNYSISVNDAQAKNLSKNELQIVQQVGLGRTNKEIAKKLFLSEGTVRNYISKILSCLELRDRTQLAIWAVQKGIINKDFS
1897576..1897587                   attR                                                                                 N/A                 AACGCTTAAGCT
