gi|00000000|ref|CP019647.1|  Salmonella enterica subsp. enterica serovar Typhimurium var. 275801, gc%: 46.76%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
60611..60622                       attL                                                                                 N/A                 GATATTCTCCTT
complement(72493..73266)           PHAGE_Acinet_vB_AbaM_ME3_NC_041884: tail tube terminase; B0X74_00350; phage(gi100291)     1.31e-08            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMNKPVVLSDLDDTLFQTRRKMVDELALEPFRTGAVDRTLNPRSFMTEEQSMLVDWLLEQAELIPVTARGTEEISRVRIPFHSWAITTHGAVILTPEGKPDEEWKAHMLGQLAPYQEKLTSMQRLITEMMDAKGINAWARLNFEYGETAVYMVMKHRDSTRLDELNAIADEIETVFPTEGFYIHRNSNNVAWLPTPVEKGLAVRWLLEKLRAERGVFPVIGLGDSLSDHRFMKLCSWFGIPRQSQFADAISQRIFGEN
complement(73259..74401)           PHAGE_Acinet_vB_AbaM_ME3_NC_041884: neck protein; B0X74_00355; phage(gi100292)       4.69e-38            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSDTLEDMIYRRTLSCGTIQVTRDQGDVSLDDLFDIAERRNPKRAFLFVSKVLGRHIPVPPSVMRQAYRQLASQFPATLTGPVLFIGMAETAVGLGAGVFDEVRHQHRESVYLTSTRHPVDGTLLCEFKEEHSHATDHLIYLPDDEEKRRRVTNARTLVLIDDEATTGNTFINLLSALRNTGKLQHIEQVIAVTLTDWSSNALSERTSLPVTSVSLVSGQWGWTPLPDAPVPDMPKVNVTSRGEWDILGKQSWGRLGMLAPAADLGHEVSVRKGERILVLGTGEFVWEPFLLAERLEAAGAQALYGSTTRSPIAVGYAIESAISFTDNYGLGIPNFVYNVAHQQFDRILVCTETPAESIDTQLLKALAEVAPVVEIVTYE
complement(74411..75469)           ATP-Grasp domain, Ter operon protein; B0X74_00360                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMNKKIWFMEGLSSQRDIIQGVKSFAQKNNFAITVFASHRNERHEILSVADYSLTEPEDPQKRLQFIQETIQTYGIHHIHTGRNSQWFEEHRSAIESTGATLTTGATGVDWLTLADEKVTFAQFMEQNGLPVVPSWRVNTLAELKTHLAAPPFSDSPVCVKPVTGIYGMGFWRFDDSASPMAVFNHPEHRLVSPQQYIAAASASESFKPLVLMPYLPGPEFSVDILADKGEILAAVGRRKEGAIQYLVNEGSAWELACDCARVMKADGLVNVQTRNDVNGNPVLLETNMRPSGGVGYTLHSGVNLPGLFAAFKLGLMSEDAVIQSARNTFSPVAVRSITDVIVYPESLSNHLN
75621..75634                       attL                                                                                 N/A                 TTTAAATTAAAAAT
75793..76374                       PHAGE_Caulob_CcrBL9_NC_048047: central straight tail fiber; B0X74_00365; phage(gi100275)     3.76e-17            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMVSLSKNQTVSLSKESSALSQLQFGLGWDPVKKKGLLGGLFGGNDSIDLDAGCVLMDSTGKTIDTIWFRKLESTCGAVVHSGDNLTGEGDGDDEVIKVNLSRLPANVEYLAFTVNSFRGQSFNDVENAFCRVVDQTGKELARYKLTEQGSHTGIVISSLRRNNGNWDFTALGHACRGRTIDDMHSDIVSAVIR
76374..77531                       tellurium resistance protein TerA; B0X74_00370                                       N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMNLTPGGNAPVPAQELRVRITSGGQVDASAFRLYADGKVQGDADMVFYGQPRNDDGTVSLVSEGQYSTFTVALNRLKPDVQKIAFTVTCDGGQTVSGLRNLSIDVEQGATGLVSGSVELSGRQEAALILGEFYRRNNDWKFRFVAQGFNGGLKPLAEHFGVNIADEPAPAAPTPPVVTPPPVETKISLSKVSLTKDKPAISLTKRDNFGEIRINLNWHRGSGKSGFAGMFGSKGIDLDLGAFVELQDGYKSVIQALGNAFGNYRDEPYVQLKGDDRTGDVSDGEWLHINGREWKHIREVLIYAFIYEGVPSWDKTDGVVTIHVPEQPPIETRLTEGENRRTLCAIARLVNENGAIKVERINQYFKGQDEMDRAFGWGFRWSAGSK
77554..78009                       PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126: hypothetical protein; B0X74_00375; phage(gi100004)     6.80e-07            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSFFDKVKGAINSGRDELTRQVGRFKNKKFMHGTVAVCARIAVSSDGVSSEEKQKMMGFLRSSEELKVFDTNEVIEFFNKLVSSFDFDVEIGKGETMKYILALKDQPEAAQLALRVGIAVAKSDGNFDQDEKLASREIAIALGFDPAEFGL
78032..79072                       PHAGE_Klebsi_ZCKP1_NC_047994: terminase large subunit; B0X74_00380; phage(gi100156)     3.06e-99            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMVSTHIGFPTETVIVFIALSVGAIFIDLFMHRDDKPISLKSAALWSVFWVVVAMAFAGFLYIHHGAEVASLFVTGYALEKVLSVDNLFVMMAIFSWFAVPDRYRHRVLYWGIIGAIVFRGIFVAIGTSLLSLGPYVEVVFAIIVAWTAVMMLKSGDDDDEIEDYSQHLAYRMVKRFFPIWPKLRGHAFLLNQKEVDAELAKPENSDVTIGRGKKAALYATPLFLCVAVVELSDVMFAFDSVPAIIAVSREPLIVYSAMMFAILGLRTLYFVLEALKQYLVHLEKAVIVLLFFIAAKLGLNATDHIWHHGYSIAATTSLYVVLGVLALGILASVMFPGKPESEEKGS
79121..79699                       PHAGE_Caulob_CcrBL9_NC_048047: central straight tail fiber; B0X74_00385; phage(gi100275)     1.64e-23            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSVSLSKGGNVSLSKAAPSMKNVLVGLGWDARSTDGQDFDLDASAFLLAANGKVRGDSDFIFYNNLTSSDGSVTHTGDNRTGEGDGDDESLKIKLDAVPSDVDKIIFVVTIHDAQARRQSFGQVSGAFIRLVNDDNQTEVARYDLTEDASTETAMLFGELYRHNGEWKFRAVGQGYAGGLASVCAQYGINAS
79767..80342                       PHAGE_Caulob_CcrBL9_NC_048047: central straight tail fiber; B0X74_00390; phage(gi100275)     1.32e-25            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMAVSLVKGGNVSLTKEAPTMNIAMVGLGWDARVTDGQAFDLDASVFAVGEDGKVLSDAHFIFFNNKTSPDGAVEHQGDNRTGEGDGDDEQVKIDLTKVSADIKKLVFAVTIYDAEARKQNFGMVSNSFMRVYNNDNGTEIARFDLSEDASTETAMVFGELYRHGAEWKFKAVGQGFAGGLAALASQHGVNI
80771..82012                       PHAGE_Gordon_Bachita_NC_030936: hypothetical protein; B0X74_00400; phage(gi100111)     4.46e-21            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMNLQSGQNIPLQQSAIRLNLQYPAKSGFKGEPDTCLFLLNAQGKVTGDSDFIFYNNLSSPEGAVKLVTGSQQSSIEIALDRVPANVSKIAITVVIDGEDTISGLSLLSIQAPGIADFQAETQGRSEKAIILGEVYRHNGAWKLRALGQGFNGGLEPLAISFGVDVAQPAPQPAKPARISLEKKLETRSPRLVSLAKKASVSLTKNKLDTLEAAVAFVLDASGSMSGQFSKGNVQSVLDRIAVLAAQFDDDGEMDVWGFGEKHKKYPNVTLDNLDTYIQSIRGSGKRSAWENLPGLGGTNNEPPVMEEIVDYFKDSKIPVYVVFITDGGISKTRAIKDAIRRSANYPIFWKFVGLGGSSYGILKNLDDFTDRRVDNTHFFAMDDFGSISDEKLYDNLLEEFRPWIDETKRLGIL
complement(82575..82856)           uncharacterized protein; B0X74_00405                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSQHWYEVKSNQGIVQVMLGWDPPLQWFHMCIDYDINAAEDPLYTNLAEPDPYYVTPEYLQFVLERFEITDIVIKPDTSGLYEELLMDQLLDR
complement(82906..83097)           PHAGE_Burkho_KS14_NC_015273: gp43; B0X74_00410; phage(gi327198312)                   2.54e-16            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMEGIETLSLRLDENETMALAQFVKRLSWSDLRGCAVSDEEAWVMKSAVDKLQQALREEGYAPR
complement(83189..83530)           uncharacterized protein; B0X74_00415                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMAKVQGLFVGYRKFAVDREWLRQQEEQRYRDRQRQFDEWSRKWVTVTRLKETRLWTDGAIRRWLGEPQQQGKYKVFPVEAVLAAEKLNEFQLWLKPRLEKKRAQHHHFLIPFL
83903..84295                       uncharacterized protein; B0X74_00420                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMDDKEQFTNLVAKHASGLTEEQLAGYDACSLDGECVTPSYEVFRGYRTRHTLDEFLEMAISLNAIHPDEYLTDMLLKPHEVIGALADEGDQLNNATPVYFFPDTGVYAAAVSETRVLDAWLCWPCYPANW
84274..84585                       uncharacterized protein; B0X74_00425                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMLPGELVTRPLELHRPDTNLTDPVAGRLSELHVLIPQAPCQAPTCCQASPDSRSAPILQPITFCFLFIFFPFPQKSRAAWTGHHCRMWGLNKGRVVSFARCHG
84899..85192                       PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; B0X74_00430; phage(gi100035)     6.77e-06            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMNNDYPLNTLNQLRPLLIGFRKANGLTQKDLSERLGVTQQTYSRLEANPASASIERLFKVFSILGVKISFSSATTSSERKQTEEMLKSNSPARQEDW
85197..86522                       protein kinase / HipA toxin; B0X74_00435                                             N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSRKQQRLVIWMNGIKVGYWEKSKGVDSLEYLPEWVADEQGRPLSLSLPFTPGNQVWRGNVVRDYFDNLLPDSEGIRRRLAMRYKADSLEPFDLLTELGKDCVGAIQLLHDGDEPTDLYSVKYHPLTESEIAATLRNTTETLLPGRPEDNDDLRLSIAGAQEKTALLWHEDRWCMPEGNTPTTHIFKLPLGLVGNMKADMSSSVENEWLCSVLLGQYGLPVARTQIAHFEDQKALVVERFDRKWSGDGQWIIRLPQEDMCQALGVSPLRKYQADGGPGISEIMEVLSNSDRAERDKAQFFMTQIIFWMMAATDGHAKNFSISIGPQGRYHLTPNYDVLSAWPVIGHGNNQISWQKCKLAMAVRGSSNYYQIYRIQRRHWIRHGEITGLSKQQTEAMIEEIIARTPGVIERVSGLLPDQFPQQLAESIFDGMRQQCRRLAEK
86583..86789                       uncharacterized protein; B0X74_00440                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMTEEQKRIERAIELACRYGGTDEMHHLQWVVDQMVRELAGERYAQIVADATSGEDGPDTYKWSVGIAP
complement(87223..88059)           APH(6)-I family aminoglycoside O-phosphotransferase (StrB) protein; B0X74_00455      N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY
complement(88059..88862)           APH(3'') family aminoglycoside O-phosphotransferase (StrA) protein; B0X74_00460      N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
89039..89755                       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; B0X74_00465; phage(gi100027)     1.04e-174           SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
90189..90581                       cysteine-hydrolase family protein; B0X74_00480                                       N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMLFPNFSLGEEYEHAPPATNRQISPYLPSGRFRTGLPVEGLAIERGDLFYACPRASVFYGTALDADLRTRGVSTLVMAGISTTGVVLSSVAWASDADYDVRLVQDCCYDPDRDAHEALLRSGFGGRVQVV
90719..91603                       permease of the drug/metabolite transporter (DMT superfamily;EamA family); B0X74_00485     N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSLRTPDLLFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALPAGLLLVMIVRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLMVVFISAALLGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGTVLTRKWQPPVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAGLTYFLWFRGISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWLGQRSNRTPRARIACRKSP
complement(91635..92834)           tetracycline resistance, MFS efflux transporter Tet(A); B0X74_00490                  N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR
92913..93590                       tetracycline resistance regulatory protein TetR; B0X74_00495                         N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMFISDKVSSMTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD
complement(93622..93864)           Tn3 family transposase; B0X74_00500                                                  N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMKTAALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERGREAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL
95262..95275                       attR                                                                                 N/A                 TTTAAATTAAAAAT
complement(95325..96185)           PHAGE_Escher_RCS47_NC_042128: hypothetical protein; B0X74_00510; phage(gi100022)     1.27e-134           SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW
96415..97131                       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; B0X74_00520; phage(gi100027)     1.04e-174           SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
97174..97185                       attL                                                                                 N/A                 CAACAGTGCCGT
complement(98570..100006)          glutathione synthase; B0X74_00530                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSTLDVQKLKDDAVEWALTHGVAFKESSYSAVHTPFTLTPTPISRKSYQYLKNATGILSKLIYSVSEDHDFLYSAIYPIKAGNAFFSALLNMHQQIHSSSRHAPRLPLLIMRSDFMDDNRDGFRLIEFNGIAAGMGPFGQRIHDLHHYLQRQYPAVFSDLSNQATGALVDNQAIEGLSAAICQATCRIKQEFGDPGPARFLMIVQENENNVFDQHLLELALQQKGIETHRRTFRELHNQLSTGADNRLILEGVGPLDTVYLRAGYQYSDYEAFNIDEQECCQALMATRVFIEQHRVAVNATVGQQLATSKRVQMLLSQLGYDEFVAFGLTLQEAKIAKTILGEMLPISPDSINLAKESPSETWVLKNQGEGGGHCLFGADILTKLTELTPQQYQSWSLMRRLHPQPRAMPTLIVRKGELHKVNDLISELGMFSVQTDNNPSSAEHSFAGYLIRSKSAESTEGGVHSGQGVLDSLVYSD
100261..100977                     PHAGE_Escher_RCS47_NC_042128: hypothetical protein; B0X74_00540; phage(gi100027)     1.04e-174           SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
101020..101031                     attR                                                                                 N/A                 CAACAGTGCCGT
107706..107717                     attR                                                                                 N/A                 GATATTCTCCTT

#### region 2 ####
98444..98455                       attL                                                                                 N/A                 CTTCATTTATAA
104404..104417                     attL                                                                                 N/A                 GGCACTGTTGCAAA
complement(104456..105172)         PROPHAGE_Brucel_1330: transposase, putative; B0X74_00560; phage(gi23502708)          4.24e-53            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
complement(105298..106089)         sulfonamide-resistant dihydropteroate synthase Sul3; B0X74_00565                     N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSKIFGIVNITTDSFSDGGLYLDTDKAIEHALHLVEDGADVIDLGAASSNPDTTEVGVVEEIKRLKPVIKALKEKGISISVDTFKPEVQSFCIEQKVDFINDIQGFPYPEIYSGLAKSDCKLVLMHSVQRIGAATKVETNPEEVFTSMMEFFKERIAALVEAGVKRERIILDPGMGFFLGSNPETSILVLKRFPEIQEAFNLQVMIAVSRKSFLGKITGTDVKSRLAPTLAAEMYAYKKGADYLRTHDVKSLSDALKISKALG
complement(106180..106407)         uncharacterized protein; B0X74_00570                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMFELCRINANQGLTAEIDWNYTSWSRRCRKILIGLVVRGAKTVVVRGKNRILTQNREKLEMTVPISFHNELKQKN
complement(106558..106803)         GrpB nucleotidyltransferase superfamily protein; B0X74_00575                         N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMKIEIMEYNPDWTKNFEEEKIKLLHFFGSHAVAIEHIGSTAIPNQRAKPVIDIFIGVSPFAELPFISAFLMQRSITTLRQI
complement(106841..107704)         PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; B0X74_00580; phage(gi971760361)     6.59e-10            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMIPNSENKRVWFITGASKGLGYAFTCAALKAGDKVVAVARTIDNLAKLEETYQESLLPLNLDVTDREAVFSTVETAVKHFGRLDIVVNNAGIMTMGMIEELNESDARKLMDTNFFGALWVCQAVMPYLRSQRSGHIIQITSIGAIISGPMSGIYSASKFALEGMSEALAKEAEHFGVKLTMVEPGGYWTDLYTSMSYSNPLDSYGTLRDELAKQYSEDSVDSDPSLAAEALMKLVASNNPPLRLILGSMVYDLAMDTLKARMATWEEWEAVSRASEKAIPAPERYGV
complement(107717..107833)         uncharacterized protein; B0X74_00581                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMIICSGELLGVQNKVLKIVGLMAFNGINFAYNNLSIIA
107961..107974                     attR                                                                                 N/A                 GGCACTGTTGCAAA
108012..108728                     PROPHAGE_Brucel_1330: transposase, putative; B0X74_00585; phage(gi23502708)          4.24e-53            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
108767..108780                     attL                                                                                 N/A                 TTTGCAACAGTGCC
108961..109647                     PHAGE_Paenib_Vegas_NC_028767: transposase; B0X74_00595; phage(gi971741608)           1.48e-44            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMLVNPNNPIFNLATGKVLLKVPQVRGMEFYPSCIEKGMRSERALKLAIAEMYVKGVSTRRVSDIVEILCGTEVSSSQVSRLAKELDEEITSWKAQPVGQIQYLVLDATYESVRVGSHVVKQALLVAIGVDYSGNRHILDAEVANSEAEVNWRSFLEGLVRRGMHGLRMITSDDHSGLRAAIDAVFPGILWQRCQFHLQQNAHSYVTKKDEIPLIAADIRKVFNRNMSR
complement(110164..111051)         PHAGE_Entero_VT2phi_272_NC_028656: putative transposase; B0X74_00610; phage(gi966197765)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNDDLAA
complement(111051..111377)         PHAGE_Entero_VT2phi_272_NC_028656: IS629 transposase orfA; B0X74_00615; phage(gi966197766)     2.58e-75            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMTKNTRFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTSAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
complement(111709..112500)         streptomycin/spectinomycin adenyltransferase AadA1; B0X74_00625                      N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQPVILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK
complement(112593..113852)         chloramphenicol efflux MFS transporter CmlA1; B0X74_00630                            N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSSKNFSWRYSLAATVLLLSPFDLLASLGMDMYLPAVPFMPNALGTTASTIQLTLTTYLVMIGAGQLLFGPLSDRLGRRPVLLGGGLAYVVASMGLALTSSAEVFLGLRILQACGASACLVSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALVDMWLGWRAIFAFLGLGMIAASAAAWRFWPETRVQRVAGLQWSQLLLPVKCLNFWLYTLCYAAGMGSFFVFFSIAPGLMMGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLAITEIWALQSVLGFIAPMWLVGIGVATAVSVAPNGALRGFDHVAGTVTAVYFCLGGVLLGSIGTLIISLLPRNTAWPVVVYCLTLATVVLGLSCVSRVKGSRGQGEHDVVALQSAESTSNPNR
complement(114114..114905)         streptomycin/spectinomycin adenyltransferase AadA2; B0X74_00635                      N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMRVAVTIEISNQLSEVLSVIERHLESTLLAVHLYGSAVDGGLKPYSDIDLLVTVAVKLDETTRRALLNDLMEASAFPGESETLRAIEVTLVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPAMIDIDLAILLTKAREHSVALVGPAAEEFFDPVPEQDLFEALRETLKLWNSQPDWAGDERNVVLTLSRIWYSAITGKIAPKDVAADWAIKRLPAQYQPVLLEAKQAYLGQKEDHLASRADHLEEFIRFVKGEIIKSVGK
complement(114963..115571)         HAD-superfamily, subfamily IB hydrolase; B0X74_00640                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSLALFDFDGTITTRETMPDFVRRSVSRRRLLVGQLLLAPLVLGYKIGILSGTLIRRVIVRFAYSGIPASVLEAQGRDFAQSYLPNTLRGEAMQRIAWHKAQGHKVVVVSGGLEAYLEPWCDSHGVELICSSLQQSDGILTGRYEGRQCVLTEKARLVRERYDLATYPTIYAYGDTPEDLDMLAIATKQYYQWQEVGVAGGR
complement(115667..116509)         PHAGE_Mycoba_Backyardigan_NC_042308: tail length tape-measure protein; B0X74_00645; phage(gi100057)     1.14e-10            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMKEKVVVDKAISLYTESFGDPAHEPIILIMGAMSSAVWWPDEFCSQLAKMGRYVIRYDHRDTGKSTSYEPGQAPYSVEELADDVVRVIDGYGLEAAHLVGMSLGGFLSQLVALKYPKRVKSLTLIASERLADADPDMPAFDPAIIEYHQRAESLDWSDRDAVVAYQVGAWRINSGTAHAFDAEKIQNIAELNFDRTPNILTTFNHTTLGGGERWLGRLNEIAVPTLIIHGTEDPVLPYVHGLALKDAIRGSKMLTLEGTGHELHHEDWPRIIQAIKGQTS
116676..117542                     PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail fiber protein; B0X74_00650; phage(gi100052)     2.43e-08            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQGTVAKLAMRQPFVLFKGLTFQKLCLPGAFRPGDHHNKMLRPGLCVVHASPQYL
complement(117433..118149)         PROPHAGE_Brucel_1330: transposase, putative; B0X74_00655; phage(gi23502708)          4.24e-53            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
118187..118200                     attR                                                                                 N/A                 TTTGCAACAGTGCC
126120..126131                     attR                                                                                 N/A                 CTTCATTTATAA

#### region 3 ####
complement(167386..167982)         PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; B0X74_00905; phage(gi100060)      7.06e-78            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMPRRLILSATERDTLLALPESQDDLIRYYTFNDSDLSLIRQRRGDANRLGFAVQLCLLRYPGYALGTDSELPEPVILWVAKQVQAEPASWAKYGERDVTRREHAQELRTYLQLAPFGLSDFRALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERGREAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL
complement(167986..168546)         PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; B0X74_00910; phage(gi100061)      5.65e-83            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMQGHRIGYVRVSSFDQNPERQLEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHSMDRLARNLDDLRRLVQKLTQRGVRIEFLKEGLVFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSDEQAATLRQRATAGEPKAQLAREFNISRETLYQYLRTDD
complement(168722..169072)         TnAs3 protein EAL domain protein TnpM; B0X74_00915                                   N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVNQWRNTTMNANEPSTSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFQARASTATETSVKPDACDSPPSG
169137..169316                     transcriptional regulator; B0X74_00920                                               N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMDPSGNDGLLPAISGRREDFPQPAVRCGTDGLRAGVVNPPGLTCAALPLTSEGRQRIKR
complement(169275..170288)         PHAGE_Mycoba_Butters_NC_021061: integrase; B0X74_00925; phage(gi479336499)           3.30e-12            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
170433..170930                     PHAGE_Bacill_Bp8p_T_NC_047744: hypothetical protein; B0X74_00930; phage(gi100167)     1.86e-33            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMNSESVRIYLVAAMGANRVIGNGPNIPWKIPGEQKIFRRLTEGKVVVMGRKTFESIGKPLPNRHTLVISRQANYRATGCVVVSTLSHAIALASELGNELYVAGGAEIYTLALPHAHGVFLSEVHQTFEGDAFFPMLNETEFELVSTETIQAVIPYTHSVYARRNG
171087..171332                     DUF1010 domain family protein; B0X74_00935                                           N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMFCLFSGLRLHGLRRFSVFLASSPCVASASSYRFCSAVPPRWRSVFSRLAPVAKFKLSVLASGSNISVKPTRILRSAYLAR
171338..172129                     streptomycin/spectinomycin adenyltransferase AadA2; B0X74_00940                      N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMREAVTIEISNQLSEVLSVIERHLESTLLAVHLYGSAVDGGLKPYSDIDLLVTVAVKLDETTRRALLNDLMEASAFPGESETLRAIEVTLVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPAMIDIDLAILLTKAREHSVALVGPAAEEFFDPVPEQDLFEALRETLKLWNSQPDWAGDERNVVLTLSRIWYSAITGKIAPKDVAADWAIKRLPAQYQPVLLEAKQAYLGQKEDHLASRADHLEEFIRFVKGEIIKSVGK
172293..172640                     PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; B0X74_00945; phage(gi311992758)     1.46e-08            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAFYFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLARSPSWKSLRRPTPW
complement(172990..173706)         PROPHAGE_Brucel_1330: transposase, putative; B0X74_00955; phage(gi23502708)          4.24e-53            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
complement(174152..174508)         uncharacterized protein; B0X74_00960                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMKLKYLLLCATLSVAFTSSAVLASENGKKPIPGKSDVMVADICLKPEIQSETDYKKTKELVRTEFEENLPVGSKIKEKDLNAVIEAFATRKRDTPERADHCQENVRERYWEMNPVKDK
complement(174658..175275)         uncharacterized protein; B0X74_00965                                                 N/A                 SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMPLPPNFLSPEDQAEYDAYMSRFSEINHYYDYHTVPVIDWFFKQATEALHHELWIPACTSFLNGIETSLMVTLKSLMLKPTVNDQHAAPELVDLEGISVMSNALLRKAKQEGVPVELLSFPAEQDMLVKVAAGRTPEAEIVRLRNNLCHGNILEFIMSVDIGTSGPIRIFTPECCRELAHELSSISRNWVVGLHKYWVDNNLISP
175469..175903                     PHAGE_Cronob_ENT39118_NC_019934: protein umuD; B0X74_00970; phage(gi431811072)       7.32e-28            SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMSVILEHISNKPYEMAPFFSDLLSCGVMSPCAGHEDNELNLHEYVVRNRPSTFFVRAAGLSMINAGINDGAILVVDRSLTARHGSIVVALVDGEFTVKILHTYPELLLMPSNPAYKPIRVNPESLEIWGVVTFALNQFSHVHAR
175893..177146                     PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; B0X74_00975; phage(gi431811050)     2.96e-122           SalmonellaentericasubspentericaserovarTyphimuriumvarmonophasic4512iMHVDINGAYAAFECAMDPKLAKKPLIIASNNDSSVIAMNKLAKSVGIKRGTPIFKCRDLIQQHQIEVRSSNFTLYEDYSNRFHETLESFAPQSSRYSIDENFMLLKNMNKIIDYEDYGRLIRSTLLHNLSLTCGVGCSSTKTLAKLCTYASKRWAATGGVVVLTDQARIRKLLGLISTREIWGIGQKISERLSAFGIITAGDFYNSDVRFLRKSFGVEIERTWRELHGEPCFRLHESPPVRQQIIVSRSFGQRLNEIGKLHEAVSFFTARAAEQLRKDGSWTRQITVFIQSSNYAQGENRYSNCGIEPLTATQDTRDLVDAAMTILNRIYKPGIAYAKAGVMLSAMTDGTEQLSLFDERPARPGSQALMKVMDRFNKEKRGALFLLGEGIQQDFRMKQAMLSPRYTTRWDELLVVKA
