gi|00000000|ref|CP020336.1|  Shigella flexneri 4c strain 1602 chromosome, complete genome. 4661857, gc%: 50.86%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
333870..335143                     PROPHAGE_Escher_CFT073: transposase insC; BS654_01725; phage(gi26249447)             1.48e-64            Shigellaflexneri4cVIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMKNELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERDCVSRSRWTAVIVRHCTGRGLPAASTVKQYRTSCWERWNAASATIFRRLQWSGRIMVHATGLMKHASSPGCWDLNRRTRRCGVRRVTEQRASKRSVTTSVSCPNQTGRQQRTLQRRSSIITNGIRIVRWVIARHGNICGSGLVMGVITDVWKYAG
complement(335200..335487)         hypothetical protein; BS654_01730                                                    N/A                 Shigellaflexneri4cMDEEYRKDLQLWFGLTHASFCVMPRVFMEAMPPEWQEKMAQLLFEYSDTIKTDVCGVHSCFVTAKDGNNRFMRMPEDILNYRHPRREFIESFLKK
335486..335584                     pyrimidine monooxygenase; BS654_01735                                                N/A                 Shigellaflexneri4cIVLKWHTEFGHLNRGDMLTSEQHRCSNEKKKF
335565..336733                     PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BS654_01740; phage(gi24373865)       4.02e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWGKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPNQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITVHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
336727..337782                     PHAGE_Entero_IME10_NC_019501: terminase large subunit; BS654_01745; phage(gi422934280)     0.0                 Shigellaflexneri4cMLTTSPFFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVFNTCEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRDIKKPKEKKIPAPIRPIARRT
337783..339948                     PHAGE_Entero_IME10_NC_019501: portal protein; BS654_01750; phage(gi422934281)        0.0                 Shigellaflexneri4cMADENRLNSILCKFDADWMASDEARTEATNDLYFSRVSQWDDWLSNYTTLQYRGQFDVVRPEVRKLVAEMRRNPVDVLFRPKDGANPDAADVLMGMYRTDMRHNTAKIAVNVGVREQIESGVGAWRLVTQYEDNDPTSNNQVIRRLPIHEACSHVIWDANSKQMDKSDAKHCTVINALSRNGWKEFAEDYGIDPDTLPSFQNPNDTWLFPWVSNDVVYVAEYYEVEEEKEKVFIYRDPLTGEPVSYYQQDIKDVIDDLANRGFIKVAERKVKRRRVYKSIITCTQILKDREKIAGEHIPIVPVYGEWSFAGDKECYEGVVRLTKDGQRLRNMIMSFNADIVARSPKKKPTFFPEQIEGYEYMYGGNDDYPYYLQNRTDENGNDLPIGPISYMENPEVPQANAYMLEAATNAVKEVASLGVDAQAANGQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYASMVNDIYDVPRHVTLTLEDGSEKDVQLYAQVVDYQSGNVVTLNDIRGRYECYTDVGPSFQSMKEQNRAEIQELLTKVPQGTPEFQMLMLQYFTLLDGKGVEMMREYANKQLVMMGLKKPETPEEMEMVQQAQQQPQQPSAEQIQAQGILLQGQAELLKAENQQAQIQVEAAKVEAQNQLNAAKIAEIFNNMDLDKQAELREYLRLVGQFQQQRSKDARANAELLLKDADQTHSQRMDFANLMRQVQIPSGGVAETPQ
339962..340873                     PHAGE_Entero_IME10_NC_019501: scaffolding protein; BS654_01755; phage(gi422934282)     0.0                 Shigellaflexneri4cMDQTTDIQASEELTLPGNHAAASADGLVVDNANDSAGQEEGFEIVRKDDEKPKQDPATNAEFARRRIERKRQRELEQQMEAVKRGELPEHLRVNPELPKQPDPNDYLSEDALAKYDYDQSRALAAFQQANSEWQIKAMDARSQAVAEQGRKTQEFTQQSAQYVEAARKHYEAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGANPEKTRQLLAMDGQSALIELTRLSERLTLKPRAKPVSEAPLPDEPIQGHAVAANISAIEKQMEAAANKGDVETYRKLKAQLNKGIR
340873..342168                     PHAGE_Entero_IME10_NC_019501: coat protein; BS654_01760; phage(gi422934283)          0.0                 Shigellaflexneri4cMALNEGQLVTYALDEIIGTVQNLTPMASKVTKYPPPAESMQRSSNTVWMPVEQEAPTQTGWDLTGNATGILELSVKCNMGDPDNDFFELRADDLRDERSYRRRIQASAKKLANNIESAIAKQATEMGSLVVHDTRAIGPSTGLPGWDFVSDAERLMFSRELNRDMGISYFLNPDDYRKAGRNLVDGDIFGRVPEEAYRNGTIQRQIAGFDEILRSPKLPAVTKSTATGVTVSGAQKFKPQAYTLDTDGNKENVDNRVATVTVSSTTGFKRGDKISFIGVKFLSQMAKNVLTDDATFSITRVIDGTHIEITPKPIALDDASLTKEEKAYANVNTSLADTTPVNVLNVATTTANVFWADDSIRLLSQPIPVTHELFAGMKTSSFSIPGIGVNGIFATQGDINTLSGKCRIAVWYSACAVRPEAIGVGLPNQTA
342213..342443                     PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; BS654_01765; phage(gi389060541)     5.88e-06            Shigellaflexneri4cMTHMIFRHGDMKKWKGVGYDFEIVKAEELQEYLDAGWFSHPDDLLKDVAEPEPEEKQRKKPGRKPKAAADEPDNEG
342421..342921                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; BS654_01770; phage(gi422934284)     3.28e-122           Shigellaflexneri4cMNLTTKGDLVLAALRKLGVASNATLTDVEPQSMEDGVNDLEMMMAEWLGGDASPGINVGYIFADADVAPDPGDEHGLSNNAINAVIFNLACRIAPDYALEASAKLITTARYGKERLVKLSAMDRAKAAKCKSGYPNRMPVGSGNQLAKWNGWNYFHRKEPCDNGSE
342921..344339                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; BS654_01775; phage(gi422934285)     0.0                 Shigellaflexneri4cMPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLRSFPGIAKRSDVNGVSRGVEYNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIDSGQVSPIASASIEKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASSIANGPQWCVLKTGLYDDVYRAIDFVYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVFDLEVESSTGVAQYADRLFLSATTDCINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNVGFKLRVITKSPVTLSGAQIRIE
344339..345187                     PHAGE_Entero_UAB_Phi20_NC_031019: membrane-associated initiation of head vertex; BS654_01780; phage(gi100034)     2.48e-46            Shigellaflexneri4cMADSNLNVPVIIQATRLDTSVLPRNIFSQSYLLYVIAQGTDVGNVANKANEAGQGAYDAQVRNDEQDVILADHEQRISAAEATLVNHEERIRQAESTLQDHETRIAQNESDISSLDTRVQSLESQVSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGSLAPFFDTVNNKMVVFNENKTLLFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNAATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGAAFTATTIKIIAEQ
345187..345642                     PHAGE_Entero_IME10_NC_019501: head assembly protein; BS654_01785; phage(gi422934287)     2.95e-110           Shigellaflexneri4cMITFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTLDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
345645..346337                     PHAGE_Entero_IME10_NC_019501: DNA transfer protein; BS654_01790; phage(gi422934288)     2.17e-158           Shigellaflexneri4cMLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSKQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
346347..347678                     PHAGE_Entero_IME10_NC_019501: gp20; BS654_01795; phage(gi422934289)                  0.0                 Shigellaflexneri4cMATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEEQRNSIGTLAAGARLASSSPEAMQSWLQNNAGELARVGVNPHDVAQMYQQNPRQFGEFVDHLGMNSLGPEKYFDLQDKMQGRQVTMRGQDLDSQTAARNQAITMRGQDIQANLGQQRINLDAETNRINNENKRLDRMLSAETNDLKRQEIQSRIAANNQQLQQKQQALNDGYKDGINTLTTSMFTLNDIVSSPSLKSITGLRGVIPNVPGSQAADTQARLDTFKSQAYLTAVQAMRGMGALSDAEGKKLDQAVGSLQNSQSEESFRRNAGVILNTLNQKRNEAVGKYVQQNGIKRVEAPQASIDYLKQHPELSIDFINRYGYLPSLGQ
347679..349409                     PHAGE_Entero_Sf101_NC_027398: transglycosylase; BS654_01800; phage(gi849122275)      0.0                 Shigellaflexneri4cMANYRDLLEQAGARYGVPEGLMTALGAKESSYNPAAVSSAGAVGLTQVMPGTWRDMGYTDEQMQNPEYQADAGARYLAKMYQQFGNWRDSLQAYHDGPGNVMKAKRGEYTPGPEGRGYVDDRFAQWAGDPVTDSTVEQRATSAKVHPQQDPNNPFAQLEVQSSEQVSASGVQSDPNNPFAQIEQQAASQQPPQPVSSVAPKPVQQQTVNQANNAPTREEPSLMQQAGDWLTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPYAQAGESIGGYLVPGAGVAGNMVIGSLADAANQRGDFAENAAINAGLSIATHGLINGVTRGVRGASNIISGNKTSAQRATTAPTETSPFSGDAAAATNPAVHAAEARVAQGVPMTPATKNPEEVVRTVAAQKRPNLASSLDELDINPQAEVLESAERLNVDSLLPSHFSGNEQYKAVEQAIKSRAGSALQVQENEAIRQLAQGAGEIIDRVSGAKDALGMSDKFIDTVNGRMSALMKRSDQLYRNVEKAMPAGAKIDAPSTRSMLKQVAEDLGGMKNLDPIEKRVEVA
349535..350744                     PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; BS654_01805; phage(gi157166066)     9.28e-70            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTNVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA

#### region 2 ####
404622..404633                     attL                                                                                 N/A                 CATCCGGCAATA
405869..406566                     PHAGE_Entero_P1_NC_005856: InsA; BS654_02150; phage(gi46401643)                      6.64e-57            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
406757..407860                     glutamate 5-kinase; BS654_02155                                                      N/A                 Shigellaflexneri4cMSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRRNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR
407872..409125                     gamma-glutamyl-phosphate reductase; BS654_02160                                      N/A                 Shigellaflexneri4cMLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESAEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALTQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA
409240..409315                     tRNA                                                                                 N/A                 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA
409270..409333                     attL                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAGTTAC
complement(409330..410490)         PHAGE_Entero_HK446_NC_019714: integrase; BS654_02170; phage(gi428782218)             0.0                 Shigellaflexneri4cMSIKLRGGTWHCDFVAPDGSRVRRSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEACIRWLREKSDKKSIDDDKSIISFWMLHFREAILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGNPVPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDRAPKISTPRVKNGRIRWLTEEESKRLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
complement(410382..410714)         PHAGE_Entero_HK446_NC_019714: excisionase; BS654_02175; phage(gi428782219)           1.83e-77            Shigellaflexneri4cVEEEIFTREEAASYLKVDKGTITQWIRSGRLQAAKINPDKPKSPYRICKSDCIAALKSVRHNSAVNAVDVQEVKACQSNYAVARGTAISSRQMDQELDALLKHRTKGKRKN
complement(410805..411149)         PHAGE_Entero_c_1_NC_019706: hypothetical protein; BS654_02180; phage(gi428781761)     8.82e-80            Shigellaflexneri4cMSDLAMKVLKWQSTGDVGISSATLASIACGLKKNIYGHHFGAPHDAADFRRCVALVEQIPEIRDSFDKVAKRVPAFKGILNEWDSLVDLLKSEMKIHGNKAPETYRRISELRKD
complement(411250..411429)         PHAGE_Entero_HK629_NC_019711: hypothetical protein; BS654_02185; phage(gi428782043)     1.88e-36            Shigellaflexneri4cMSCPKCGSGNIAKEKTMRGWSGDYVCCDCGYNDSKDAFGERGKNEFVKINKEREGNEKS
complement(411526..412200)         PHAGE_Entero_HK629_NC_019711: hypothetical protein; BS654_02190; phage(gi428782044)     7.30e-47            Shigellaflexneri4cMSTITREWLQQAINDYESVRDELPFGLDDYQGNILAALRIALASLEAEPIGAFHIAEQQVDGTSDYIKDGEWPIDNGIIEVYAAPPVPVVPAALPENDDEDGHDIDYLEPSEVYALGRTAGWNACRAAMLQGKSEQPQNAQQNIPENIPGGNSPVTPDGWISCSDRMPEDTKMLLAFSQGEIVAAYWNWVANPIDYKKYRAFTYLSGYILDDVTHWMPLPEPPL
complement(412197..412769)         PHAGE_Entero_HK140_NC_019710: hypothetical protein; BS654_02195; phage(gi428781974)     2.27e-74            Shigellaflexneri4cMSEINYQALREAAEKATKGQWAVEFDDEIYSTDGVNHEQIAMVFSENESRDAAFIAAANPATVLALLDELERNQQYIKSRDQENEEIALTVGKLRVELEAAEALNKHLELAIRKADGCSEALRRKTEAAEKRIAELEAREVVLPQCYSMLHRVDFDEPYHTEMVYRQHQVLEALHNAGINVTEACKGEAS
complement(412766..412933)         PHAGE_Shigel_Sf6_NC_005344: gene 23 protein; BS654_02200; phage(gi41057301)          8.97e-33            Shigellaflexneri4cMRGLAYNPGILPAEMIIRQRVKPMPSREELLKRNSFPSVNQNKYLNAMWRKGGNQ
complement(412950..413264)         PHAGE_Entero_mEpX1_NC_019709: hypothetical protein; BS654_02205; phage(gi428781904)     1.22e-68            Shigellaflexneri4cMKKTPWEKWEVDFLREVAATMPVEVIAEKLERTEKAVMAKATRIGADIVSRLRGRRWTRAEVSLFGKFSAEEIAIATCRSIYSVRAMRYKLKKLDEERAGIRIN
complement(413276..413758)         PHAGE_Entero_HK140_NC_019710: hypothetical protein; BS654_02210; phage(gi428781979)     2.28e-108           Shigellaflexneri4cMSKLYEIANEYAKLMDSDLEPEMIADTIEGMEGEFTDKIEQLLAIIKNEYGYAERLKDEAKSLNERAAVIQNKIDSIMAYIASSLEMVGKKKIRAGIHQVTIRKPSETVEIIDSSALPPEYVEFETTIKADKLAIKHQLKAGINIPGAQLKVGKPSLLIK
complement(413742..414644)         PHAGE_Entero_mEpX1_NC_019709: RecT family recombination protein; BS654_02215; phage(gi428781906)     0.0                 Shigellaflexneri4cMSNIVEFVKQQEQLFCGALTEQTVTWAKESQFAIQYFQKNDYLAKTALANPTSAQNAIINVAAIGITLNPASKLAYLVPRDGMVCLDISYMGLLHLAQSTGSIKWGQCKLVYSNDTYESNGLDSAPTHKYNAFGERGSIVGGYCTVKTADGDYLTEEMSLAEIKAVEATSKAKNGPWKTFWEEMARKTIVKRASKYWPKAQRLDNAIHLLNEDEGMHQEPVMPHKSEEDIREDERKRQQEIMDKAQLLCDEMAQAENMDDLKRYFAEAYRLTSGMKLQQNVQAIYIECKAKLEVASEQTV
complement(414641..414949)         PHAGE_Entero_HK140_NC_019710: hypothetical protein; BS654_02220; phage(gi428781981)     4.19e-69            Shigellaflexneri4cMILTLNDKREISQIIASFTDDDYERINSEVDRLCKRCDPISEMLRSYKPDEHTKDAIDWLEDDDCNYQEKAAEWFWDAITERVKAEYAFAIFKRRHIFGEAA
complement(415431..415496)         PHAGE_Shigel_Sf6_NC_005344: gene 35 protein; BS654_02225; phage(gi41057313)          4.83e-07            Shigellaflexneri4cWTIRTTAMIARELGKQNNKAA
complement(415889..416281)         PHAGE_Entero_UAB_Phi20_NC_031019: DCMP deaminase; BS654_02230; phage(gi100074)       1.48e-41            Shigellaflexneri4cMNCSCNDSNQKISTWRITTKAISHEENIMTVIVYGKSTFAGNAKTRRHERRRKLAIERDAICNIIDSIFGTDSEEPVQEAPRKRLILSEKAISLGNIRNQNTDECSGSICLPNVALYAAGYRKSKQLTAR
416196..416400                     hypothetical protein; BS654_02235                                                    N/A                 Shigellaflexneri4cMIFSSCEMALVVMRQVLIFWLLSLQLQFTSPPNPSRLVSVCALSAPHRSRACQSVPFGFQLPADGIG
complement(416551..417204)         PHAGE_Stx2_II_NC_004914: CI protein; BS654_02240; phage(gi32171122)                  3.58e-157           Shigellaflexneri4cMKWYELARSRMKELGITQEKLAEELGMTQGGIGHWLRGSRHPSLDEIGVVFKYLGIDNVSFNHDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNDSCSVVGKVIASQWPEETFS
417322..417537                     PHAGE_Entero_VT2_Sakai_NC_000902: similar to C2 of bacteriophage L; BS654_02245; phage(gi9633420)     1.00e-47            Shigellaflexneri4cMSNLRKYRESLNISQTTLAKAVGCTQGAIGHWESGRRFPDLKTCRALVACLNKLGAKVSLDDVFPPEHKAA
417647..417943                     PHAGE_Entero_HK629_NC_019711: CII protein; BS654_02250; phage(gi428782059)           4.03e-65            Shigellaflexneri4cMEQTSYSKLSQRDVDRAETDLLINLSTLTQRGLAKMIGCHESKISRTDWRFIASVLCAFGMASDISPISRAFKYALDGLTNKKRPEATERSEQIQMEF
418124..419014                     PHAGE_Entero_IME10_NC_019501: gene O protein; BS654_02255; phage(gi422934271)        0.0                 Shigellaflexneri4cMGVVKLADYRHNPVQHQEASSMGYVSIHRQFMDSRLYKDSQAVHLWLHLILKANHESTVVNTDIGPITVDRGQMITGRPSLVRETFIPDNKVRSLLRTFESKGMLNICSMGKKFSLFTIVKYDDFQAKNCPTVVQRLSNANTSNGASLSGDCPTVVQRLSINNNINNISNTDVLESATADKKSDKKKPSVSCQDVVDAYHEILPEAPRIRALNDKRKNQIRTFWRKAGVITRQLDGHGFTMQDWRNYLSYVGENCRWMFEERPNHQRGTVWHKKGFDFLLNDNTYLKVREGEHDDR
418989..420440                     PHAGE_Entero_VT2_Sakai_NC_000902: similar to P protein of bacteriophage HK022; BS654_02260; phage(gi9633423)     0.0                 Shigellaflexneri4cMRVNTMTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVDGLTLFDELERKSLTVSVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPQSKKKGGF
420440..420538                     PHAGE_Entero_HK97_NC_002167: Gp56; BS654_02265; phage(gi9634202)                     7.57e-17            Shigellaflexneri4cMTIYITELITGAIYTVALFYWIKNEGDPDGHR
420525..420737                     PHAGE_Entero_HK446_NC_019714: hypothetical protein; BS654_02270; phage(gi428782240)     4.74e-47            Shigellaflexneri4cMDTVNGMCSDAPRAKKCKCGKSPTIFDMENGCQIYCANHAAVAAANYRSAVTEWNNLKSVREGSHEKTNL
420700..421158                     PHAGE_Entero_Sf101_NC_027398: NinB; BS654_02275; phage(gi849122309)                  2.14e-104           Shigellaflexneri4cMLEREVMKKLTFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQQDVVPNLAGNGFVVIGQSTSRMRVSEFAELLELIQAFGTERGVKWSDEARLALEWKARWGDRAA
421155..421328                     PHAGE_Entero_mEpX2_NC_019705: NinD protein; BS654_02280; phage(gi428765664)          3.11e-35            Shigellaflexneri4cMMRCYRCGECKEDNRFRPNQPYWNRWCLRCERTPTGVLPLPQEKEDVWRDSDEVLLK
421295..421471                     PHAGE_Salmon_vB_SemP_Emek_NC_018275: NinE; BS654_02285; phage(gi399498848)           1.63e-26            Shigellaflexneri4cMARQRRSITQIALDNLIFTPTKRTKSRKKPIPTESQVKTFDYVYGLLQAKWNRMRKTR
421468..421638                     PHAGE_Entero_mEp235_NC_019708: NinF protein; BS654_02290; phage(gi428781860)         1.76e-34            Shigellaflexneri4cMIDPNRSYEQESVERALTCANCGQKLHVLEVHVCSDCCAELMSDPNSSMYEEEDDE
421631..422353                     PHAGE_Entero_HK633_NC_019719: DNA-binding protein; BS654_02295; phage(gi428782577)     2.91e-175           Shigellaflexneri4cMNELINGNAIKMTSIEIAELVGKRHDNVKRTIETLAKNGVIRLPQIEVSERINNLGFSVQYEHYVFEGEQGKRDSIVVVAQLSPEFTARLVDRWRELEETAVNIPKTLPEALRLAADLAEQKMQLENQLAIAAPKVEFADRVGEASGILIGNFAKVVGIGPNKLFAWMRDHKILIASGSRRNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA
422353..422643                     PHAGE_Entero_mEpX1_NC_019709: hypothetical protein; BS654_02300; phage(gi428781926)     8.13e-67            Shigellaflexneri4cMANLRKEARGRECQVRIYGVCNGNPETTVLAHYRMAGICGTGMKPDDLIGAWACSDCHAEIDRRTHNLDNKDARLYHLEGVIRTQAILLKEGKIKP
422640..423002                     PHAGE_Entero_HK542_NC_019769: Holliday-junction resolvase; BS654_02305; phage(gi428783393)     1.57e-81            Shigellaflexneri4cMNEYQFALPYPPSVNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVIADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELENV
422999..423187                     PHAGE_Entero_HK629_NC_019711: NinH protein; BS654_02310; phage(gi428782071)          2.32e-38            Shigellaflexneri4cMNSTIQTIPELLIQTRGNQTEVARMLSCARGTVLKYNRDSKGERHVIVNGVLMVKQGKRGRR
423184..423702                     PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; BS654_02315; phage(gi100037)     3.10e-126           Shigellaflexneri4cMSIRELNLTKEQHDWLNGWLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDKKAFGILLSYYAHGSSKRAIASYYHATAKPRKMCGRGGEGWRKPSLATCRNEIDDILKASLFVLYQPMQNAFKMRKRVEKVKHIAVKSLDMQLSI
424201..424524                     PHAGE_Entero_IME10_NC_019501: holin; BS654_02320; phage(gi422934276)                 3.76e-72            Shigellaflexneri4cMKMPEKHDLLAAILAAKEQGIGAILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFIRDLLDFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKKAGVEDGGNQ
424508..424984                     PHAGE_Entero_c_1_NC_019706: lysozyme; BS654_02325; phage(gi428781798)                1.30e-115           Shigellaflexneri4cMVEINNQRKAFLDMLAWSEGTDNGRQKTRNHGYDVIVGGELFTDYSDHPRKLVTLNPKLKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIWASLPGAGYGQFEHKADSLIAKFKEAGGTVREIEV
425119..425558                     PHAGE_Entero_Sf101_NC_027398: Rz (i-spanin); BS654_02330; phage(gi849122322)         2.52e-65            Shigellaflexneri4cMQKRQRDVAELDARYTKELADANATIESLRADVSAGRKRLQVAATCAKSTTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLRRFYSSSFTSGSVDRVMITSGVNPDTSHCCLILSIWRAVRGCVGA
425763..426248                     PHAGE_Salmon_g341c_NC_013059: hypothetical protein; BS654_02335; phage(gi255252747)     4.70e-117           Shigellaflexneri4cMNNFVEITSRIGRMYQDFLISGKGSGDIIEEIDKLSAELRRNGCVNSIFFETLLKQGFMFDMINYNKVAPSASQKSYVYVLHAEDSGLTKIGFSRRVNKRISEISRMSGGKLNLIAKIPADRELETKLHQKYYNYRSHGEWFSLNRCHLKELKEMPGNELK
426497..426739                     PHAGE_Entero_Sf101_NC_027398: hypothetical protein; BS654_02340; phage(gi849122327)     3.65e-52            Shigellaflexneri4cMAEIIPMTEEQKFQLEIYKLVMNQNAAAEEAFQFIGTDELKLELFKIHFQSGGANSDITTRTIEAVRKSKEALDLFTTGA
426741..426920                     PHAGE_Salmon_HK620_NC_002730: hypothetical protein; BS654_02345; phage(gi13559864)     1.32e-34            Shigellaflexneri4cMSRVINLGKEKKFPITQELYERLESVIHDYDGEISLCEAIGTLELLKQSLIEGAKESLT
426944..427432                     PHAGE_Entero_IME10_NC_019501: terminase small subunit; BS654_02350; phage(gi422934279)     9.82e-119           Shigellaflexneri4cMAAPKGNRFWEARSSHGRNPKFESPEALWAACCEYFEWADDNPLWEGKVFSYQGEIIKANVPKMRAMTISGLCTFLDITRQTWGTFRSMEGFSDVTSRAEDIIYDQKFSGAAADLLNANIIARDLGLKEQSQVEDVTPDKGDRDKRRSRIKELFNRGTGRDS
427410..428909                     PHAGE_Entero_IME10_NC_019501: terminase large subunit; BS654_02355; phage(gi422934280)     0.0                 Shigellaflexneri4cMELDAILDNLSDEEQIELLELLEEEENYRNTHLLYEFTPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGKYGGEWKGKRFYEPVVFWIGGETNETVTKTTQRILCGRIEENDEPGYGSIPKEDIISWKKSPFFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVFNTCEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRDIKKPKEKKIPAPIRPIARRT
428910..431075                     PHAGE_Entero_IME10_NC_019501: portal protein; BS654_02360; phage(gi422934281)        0.0                 Shigellaflexneri4cMADENRLNSILCKFDADWMASDEARTEATNDLYFSRVSQWDDWLSNYTTLQYRGQFDVVRPVVRKLVAEMRRNPIDVLFRPKDGANPDAADVLMGMYRTDMRHNTAKIAVNVGVREQIESGVGAWRLVTQYEDNDPTSNNQVIRRLPIHEACSHVIWDANSKQMDKSDAKHCTVINALSRNGWKEFAEDYGIDPDTLPSFQNPNDTWLFPWVSNDVVYVAEYYEVEEKKEKVFIYRDPLTGEPVSYYQQDIKDVIDDLANRGFIKVAERKVKRRRVYKSIITCTQILKDREKIAGEHIPIVPVYGEWSFAGDKECYEGVVRLTKDGQRLRNMIMSFNADIVARSPKKKPTFFPEQIEGYEYMYGGNDDYPYYLQNKTDENGNDLPIGPISYMENPEVPQANAYMLEAATNAVKEVASLGVDAQAANSQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYASMVNDIYDVPRHVTLTLEDGSEKDVQLYAQVVDYQSGNVVTLNDIRGRYECYIGVGPSFQSMKEQNRAEIQELLTKVPQGTPEFQMLMLQYFTLLDGKGVEMMREYANKQLVMMGLKKPETPEEMEMVQQAQQQPQQPSAEQIQAQGILLQGQAELLKAENQQAQIQVEAAKVEAQNQLNAAKIAEIFNNMDLDKQAELREYLKLVGQFQQQRSKDARANAELLLKDADQTHSQRMDFANLMRQVQIPSGGVAETPQ
431089..432000                     PHAGE_Entero_IME10_NC_019501: scaffolding protein; BS654_02365; phage(gi422934282)     0.0                 Shigellaflexneri4cMDQTTDIQASEELTLPGNHAVASADGLVVDNANDNAGQEEGFEIVLKDDEKPKQDPATNAEFARRRIERKRQRELEQQMEAVKRGELPEHLRVNPELPKQPDPNDYLSEDALAKYDYDQSRALAAFQQANSEWQIKAMDARSQAVAEQGRKTQEFTQQSAQYVEAARKHYDAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGANPEKTRQLLAMDGQSALIELTRLSERLTLKPRAKPVSEAPLPDEPIQGHAVAANISAIEKQMEAAANKGDVETYRKLKAQLNKGIR
432000..433298                     PHAGE_Entero_IME10_NC_019501: coat protein; BS654_02370; phage(gi422934283)          0.0                 Shigellaflexneri4cMALKEGQLVTYAIDEIIETVQNLTPMASKVTKYTPPAESMQRSSNTVWMPVEQEAPTQTGWDLTGKASGILELSVKCNMGDPDNDFFELRADDLRDERSYRRRIQASARKLANNIESAIAKQATEMGSLVVHDTRSIGPSSTDLSGWDFVSDAERLMFSRELNRDMGISYFMNPDDYRKSGRNLVDGDIFGRVPEEAYRNGTIQRQIAGFDEILRSPKLPAVTKSTATGVTVTGAQKFKPQAYTLDTDGNKENVDNRVATVTVSSTAGFNRGDKISFTGVKFLSQMAKNVLTDDATFSITRVIDGTHIEITPKPIALDDESLTKEEKAYANVNTSLAASTTVNVLNVATTTANVFWADDSIRLLSQPIPVTHELFAGMKTSSFSIPGIGVNGIFATQGDINTLSGKCRIAVWYSACAVRPEAIGVGLPNQTA
433343..433591                     PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; BS654_02375; phage(gi389060541)     4.31e-05            Shigellaflexneri4cMTHMIFRHGDMKKWKGVGYDFEIVKAEELQEYLDAGWFSHPDDLLKDVAKPEPEPEPEPEEKQRKKPGRKPKAASDEPDNEG
433569..434069                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; BS654_02380; phage(gi422934284)     3.28e-122           Shigellaflexneri4cMNLTTKGDLVLAALRKLGVASNATLTDVEPQSMEDGVNDLEMMMAEWLGGDASPGINVGYIFADADVAPDPGDEHGLSNNAINAVIFNLACRIAPDYALEASAKLITTARYGKERLVKLSAMDRAKAAKCKSGYPNRMPVGSGNQLAKWNGWNYFHRKEPCDNGSE
434069..435487                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; BS654_02385; phage(gi422934285)     0.0                 Shigellaflexneri4cMPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLRSFPGIAKRSDVNGVSRGVEHNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIGSGQVSPIASASIEKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASSSANGPQWCVLKTGLYDDVYRAIDFIYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNVGFKLRVITKSPVTLSGCQIRIE
435487..436335                     PHAGE_Entero_UAB_Phi20_NC_031019: membrane-associated initiation of head vertex; BS654_02390; phage(gi100034)     5.71e-48            Shigellaflexneri4cMADSNLNTPVIVQATRLDTSILPRNIFSQSYLLYVIAQSTDVGNVASKANEAGQGAYDAQVRNDEQDVILVDHEIRLASAEAKIQDHETRITNAEAAIVGLDSRLTTAENDIDYLTDEVVSIQNTLSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNAATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGAAFTATIIKIIAEQ
436335..436790                     PHAGE_Entero_IME10_NC_019501: head assembly protein; BS654_02395; phage(gi422934287)     2.35e-109           Shigellaflexneri4cMIQFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLNRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
436793..437485                     PHAGE_Entero_IME10_NC_019501: DNA transfer protein; BS654_02400; phage(gi422934288)     6.65e-159           Shigellaflexneri4cMLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSQQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
437495..438922                     PHAGE_Entero_ST104_NC_005841: gp20; BS654_02405; phage(gi46358708)                   0.0                 Shigellaflexneri4cMATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEEQRNSIGTLAAGARLASSSPEAMQSWLQNNAKELTRVGVDPNSVAQMYQQNPSGFGEFVDHLGMAALGPIDYFNVQDKMAGRDIERGELAETIRSNKAGEGLQAQSIAVSRENSLRTAGGAVPASVKEYQYFNSLSPEQQKTYLRVRGRPDAGGENVVQLADGRTVTVGGKLHGAGANAFYEGIDNEGNMVRVPASSIAAPATSSASAQNYAMKKDIDAIANADASALDFMTGMTGGAGNPAIGADVRSRLTGKEQRQLYNSAQRIQGRMQNQGVAAARDMGASGINTVAEAKMYFQGMPQVDYSSPEAMQQSIREIQEYTNNYNQQYNVNVGKSQRQQSQPAQVSQPAASSNFSSLWGD
438922..440919                     PHAGE_Shigel_Sf6_NC_005344: gene 13 protein; BS654_02410; phage(gi41057291)          0.0                 Shigellaflexneri4cMAKAWKDVIASPQYQALAPEQKAQAQEQYFNEVVAPQAGENAEQAKQAFYAAYPLPSVQPVETQQPVAQQQPQQSGFMSDLGEAVKETGRGLVQAGVNVANIPASVADAVTSAAAWAGGKLGIGDGTYQPAPRVTTQGLEQDFGLQQGALTPQTTEGRVFAEALPYLTPAGVERAAAQAPTLAGRIAQGATRLLAENAVGSLAANSAKDDAEALATDLGVGVLAGGAINAAGRGLGAAYRGVRGAIAPEAQQAIRFAEREGVPLHTTDLLQPTSRVGKMAQTTAENIPLAGTSGMRATQQEARSQLVQRFADKFGEYDPAVVIDSLKAKTSGIRRAAGNRLEQVQNAMAGINIQPARAIQQIDTEISNLQKLGKVADNETISKLQSYRDELIRNAGPDGPVNLDLKQLSDLRSQFRMDVKGERPVLPNRSDAAIQRVYKAMTDDINGAIGQNLGNDTLRKYQQANAVYADEAAKLKNTRLKNVLMKGDLTPEVVNNMLFSKNKSEIKTLYNSVGRVGRVQMRNGIIGKAMEKSGGSPDQFLRQLNILQNQTGITFKGQDAAYLKGLKNYLQSTQQAAKAAVTTPTGQQTIPFIIGYGTAMNPATTGAAVSYGLLTRAYESEPFRNAMLRMANTPRGSTAFEKAMQQAQKAINALTQGAKSDALSE
complement(441009..441269)         PHAGE_Entero_Sf101_NC_027398: putative chromosome segregation ATPase; BS654_02415; phage(gi849122276)     2.23e-53            Shigellaflexneri4cMYSKYDEAQFHLRLPHELHAKIKQRAKMNNRSLNSEIIAAIEESLDKQNSASVYIDDAERMAEQQSDMVKKIVFDTLKELYKKDSS
complement(441401..441910)         PHAGE_Klebsi_KLPN1_NC_028760: HNH endonuclease; BS654_02420; phage(gi971740839)      2.70e-40            Shigellaflexneri4cMNWNEVFVLKDDGLLYWSDQYLSRPKMFNISKEKPAGHIFKDKNRKTSYIIIRYQDKIYAAHRIIWEMFYGEIPSGMQIDHKDGNGLNNSIDNLRLVSLGENLKNKSKYTNNTSGCAGVSWHKTHKKWVAYISDAGKRINLGYFKSLDDAIAVRREAEKTYGYHENHGR
441998..442372                     PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; BS654_02425; phage(gi849122277)     2.93e-75            Shigellaflexneri4cMTDSINANVVVSMPSQLFTMARSFKAVANGKIYIGKIDTDPVNPENQIQVYVENEDGYHVPVSQPIIINAAGYPVYNGQIAKFVTEQGHSMAVYDAYGSQQFYFPNLLKYDPEQLLQLLQSDEGA
443090..443714                     phage tail protein; BS654_02430                                                      N/A                 Shigellaflexneri4cLVLNNPYFEANAGGGRPCYRYWDAPCNCGYKRWKFSSREQCKIHAHYSSNKLRWGKSYSHTQRHNVPERRGLSAKCRSTILDNRSLRGSHWVCFYRNNQGNIGFCIVSHTLGKNRQWYRRCYWCFIGRGCYRCVGLFSSARSSCRLYCADNTYICAFSLCYLYWRRYIGDPAQYARSRNLQFVCIHYQATIA
complement(443768..445046)         PHAGE_Entero_SfV_NC_003444: serotype-specific glucosyl transferase; BS654_02435; phage(gi19549011)     9.47e-67            Shigellaflexneri4cMKIFIMRNWHKISIFILAFTLIWLRRIDILTNAQFWAEDAVFWYKDAYEQGFFSSLITPRNGYFQTVSTLIVGATTFINPIYAPLLSNFFGIIIRAIIIWFLFTDRFKFLSTTSKIFISVYLICMPGLDEVQANITNAHWYLSLYVAMIIISEESKSKLWKAHDLFFIVLSGLSGPFIIFIIASSVFKYLHLSKGVISIRGLYLFYTRLPYLAMILCGLIQATSIILTFNGTRSHAPLGFSFDVMSSIISSNVFLFSFVPWNIANAGWDNHLLSYTLSTLVITLCVFIYIKGNWQMKVFATLPILIVAFSMAKPQLADSVPQLPTLATGNGSRYFVNIHIAIFSLICVCLFQCIKNKTLKIFFKIYVSVILIAMIKLNFFITPLPDMNWSQGAELINKAKHGEAVSFTVLPPWLTLDLIKKNFTLA
complement(445059..445976)         PHAGE_Entero_SfI_NC_027339: bactoprenol glucosyl transferase; BS654_02440; phage(gi849250309)     0.0                 Shigellaflexneri4cMKISLVVPVFNEEEAIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHTTGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGILSWVGGQTDVVEYVRTERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISFLYGAWMIIDTIVFGNPVRGYPSMLVSILFLGGVQLIGIGVLGEYIGRIYLETKSRPRYLIKSRK
complement(445973..446335)         PHAGE_Entero_SfV_NC_003444: putative flippase; BS654_02445; phage(gi19549013)        1.43e-74            Shigellaflexneri4cMLKLFAKYTSIGVLNTLIHWVVFGVCIYAAHTNQAMANFAGFVVAVSFSFFANAKFTFKASTTTMRYMLYVGFMGTLSATVGWVADRCSLPPIVTLVTFSAISLVCGFVYSKFIVFRDAK
446625..446688                     attR                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAGTTAC
complement(446685..447149)         PHAGE_Shigel_SfII_NC_021857: integrase; BS654_02450; phage(gi526244664)              1.01e-104           Shigellaflexneri4cMPVHLKESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDLILNPSVPNLSQSRNKEGTNDV
complement(447176..448374)         PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_02455; phage(gi21231087)            1.29e-09            Shigellaflexneri4cMIWQPEFTDKTLSRKPGAVQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
complement(448358..449567)         PHAGE_Stx2_c_1717_NC_011357: putative transposase; BS654_02460; phage(gi209447180)     1.91e-58            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGMYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTNVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
449718..450833                     PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; BS654_02465; phage(gi100150)     8.67e-25            Shigellaflexneri4cMFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMILCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA
457547..457558                     attR                                                                                 N/A                 CATCCGGCAATA

#### region 3 ####
807502..807515                     attL                                                                                 N/A                 CAACCATAACCTGG
complement(813284..813793)         PHAGE_Pseudo_MP22_NC_009818: transposase A; BS654_04440; phage(gi157834977)          8.13e-06            Shigellaflexneri4cMKSANEINQWMTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQEGRRGPGVEYIPAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSGLMQERPSISVDTLLATLGIDRQTLQTALALHKLPPETRQEILSMYGVHKQEEPVAPLLEPQDAKKAV
813956..814201                     PHAGE_Entero_Mu_NC_000929: DNA binding protein ner; BS654_04445; phage(gi9633495)     6.18e-24            Shigellaflexneri4cMRKMSNDWHRADVIAALKKTGTPLAKLSRRSGYSTGTLANALVRPWPKGERIIADALNMKPEEIWPSRYLRDHNERVDISN
814176..815810                     PHAGE_Entero_SfMu_NC_027382: transposase; BS654_04450; phage(gi849255233)            0.0                 Shigellaflexneri4cMREWISAIECMGLSGLPGSLMGVHKRAQREGWLKRRREGIRGVAYEYHISSLPNIARAEVLLQQGKFKTSQGCFEIARPTLEAHDYDREALWSKWDKASDSQRSLAEKWLPSIQATDEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHALMHLIPAQQRTVEHLDAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYSIPEDFHITIDNTRGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAFGVGGLEEYVDKHPALAGAYTGPNPQAKPDNYGDHAVDAELFLKTFAEGVAMFNARTGRETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAKNVYYNMALMNAGVKKVVVRFDPQQLHSTVY
815872..817028                     PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_04455; phage(gi21231087)            1.72e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
complement(817025..817270)         PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; BS654_04460; phage(gi966201425)     8.46e-17            Shigellaflexneri4cMAKNDAVIHVHTPFVLTLPDGSRREFVKGRHVVEEDVATHWFTRAHAEVSVGKATDARNEVKNAKELRCTGNSGHYHLFFF
complement(817312..818253)         PHAGE_Vibrio_CP_T1_NC_019457: putative major capsid protein; BS654_04465; phage(gi418489228)     1.60e-14            Shigellaflexneri4cMITFDQATVDSSGAFLIGELERLDQTLNLPLVGYTWSRDIQLREDASIADDISSWTNTSFAAAGTGANPNGKNWVGKDSTAIAGVNVDIGKSGNPLNLWGMELGWTVIELQAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYVGDSALNLKGLVTLDGVPVNNAAKTWATSTPDEIRASINQVLSDAWAASGYSVVPRDLLIPPEQFALLSSIIVSSAGNQSLLTNLQTNTISYHQNGVPLNIRAVKWLKGRGVGNKDRIVAYTNDKKYVRYPLVPLQSVPVQYRGLYQIVTYYGKLGAVEPVYKETISYVDGI
complement(818398..818754)         PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; BS654_04470; phage(gi966201423)     4.58e-65            Shigellaflexneri4cMNNVFLYRMPVGIAGAVSRPQDLTVEPVVLKSDNAFAAYGLAGKYDDDGFFVPLADGDTADKVKGIYVRPYPTTSQPDMVRQVGTGKNFPGDAMKRGYVTVNLGSDFDASTIKKGDLH
complement(818758..819978)         PHAGE_Iodoba_phiPLPE_NC_011142: gp27 putative head protein; BS654_04475; phage(gi197085641)     5.77e-20            Shigellaflexneri4cMKYFFETRLGETRYRLADGSLLCKDVPIGRTGKQLYGADDLPKLKPDKFVEIVVTRSPEQVFHPATLASFEGMSITILHPEDENGNVRLVNPENWKVLAVGHLQNVRRGTGEQSDLMLADLIVKDESAIQLIEDGLREVSCGYDAEYEQTEPGKAEQVDITGNHVALVPKGRAGNRCAIGDRDTMANQKKNWWNRMRAAIKTGDADTMNELVESAPASVTGDEGDLPQGVNLNINLSPQQPLPDKAPEMGGDPTGDSDDDLKTLLKALLAKLERNATGDNDNKPDDNPTGDGEDDEEETTITGDSAWRAEVIVPGIDLSRKMKPTAFKREVLASADKTLVRQIVGDADIRKLPKQSVDMAFNAVSEVAKGRNTRATTGDAQRLNMGMTSIASLNKQNAEFWANRKG
complement(819982..820599)         PHAGE_Salmon_SEN34_NC_028699: putative head morphogenesis protein; BS654_04480; phage(gi966201421)     1.43e-120           Shigellaflexneri4cMAALERYSEIITPWATKVAENFTADLTRQNEKVWRQHSKNISRELRNLVESAPVGQVMQSIIAEQVKYIKSLPLEAADRVYDIQNKAIEAVVTGGRAEQFAKEIASTGDVAKSRADLIARTELGRATGALDMARAIAIGSDGYIWRTADDGDVRDSHDHMKGKFVRWDSPPTLDGMTGHAGELPNCRCYKEIVFVRVPFAMKRAA
complement(820616..822082)         PHAGE_Salmon_SEN34_NC_028699: putative portal protein; BS654_04485; phage(gi966201420)     0.0                 Shigellaflexneri4cMARNKQALRRTVQATADGYENFIARVGMQTPNQHSASTYRANFTSRNRMLVEWSYRSSWIIGEAVDAIPDDMTRKGIRITSEIDAKDRGILESQLDELQIWDALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRPETIGKGKFKGILPLDRWMVDPALTRRIKDMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVERIWDRLTAFDSATVGAAQLVYKAHLRTYSVEKLRELIALGGPAYEALLKNIDLIRQFQSNEGMTLMDSRDKFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGDADLANYYDRISSLQERRLRLPVRRILDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRSTVALNTTNAISTAMGDGLMTLKAAMTDLRENSDVTGIGASITNEDIENAEDEAPPGIGEPDDEPQEPSGGNPVSNQPTQDSEGGRRHRKWSLRWFK
complement(822082..822842)         PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; BS654_04490; phage(gi764162249)     1.67e-57            Shigellaflexneri4cMSGNIGANPAIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWWLTVSEIRLTPLTTENSILWMSSAILVVRCLKSNWNQHLIVISTVTDVWSKVKKTSQNARYRHQTLLMHSLWPSRQSIHRWISGNSWGDRPGA
complement(822827..824100)         PROPHAGE_Escher_CFT073: transposase insC; BS654_04495; phage(gi26249447)             1.19e-64            Shigellaflexneri4cVIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERDCVSRSRWTAVIVRHCTGRLPAASTVKQYRTSCWERWNAASATIFRRLQWSGRIMVHATGLMKHASSPGCWDLNRRTRRCVVRRVTEQRASKRSVTTSVSCPNQTGRQQRTLQRRSSIITNGIRIVRWVIARHGNICGSGLVMGVITDVWKYAG
complement(824131..824814)         PHAGE_Acinet_IME_AB2_NC_041857: hypothetical protein; BS654_04500; phage(gi100027)     8.25e-122           Shigellaflexneri4cMTSTLTSKPTLNPALRSFWTMRARNKVLYGGRSSSKSWDAAGIAIFLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGIDMLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIRLAP
complement(824765..825529)         PHAGE_Escher_PA28_NC_041935: hypothetical protein; BS654_04505; phage(gi100067)      1.06e-17            Shigellaflexneri4cMAKPDWEAIESAYRAGVLSLRDIGEKYGVTEGAIRKRAKKLDWARSGGTQVCKNGTQKRKVRTSRKPAITGLTQKSTQLKTESTPDTKPIRGMRTDPPTNPFQPGNQQALKHGGYARRLLLKDEVIEDAKALTLEDELFRLRANNLVAAENIGRWLVSLEDANGDQERKMLIENISAAEKAMMRNTVRIESIVGTLATVGKIFADTAYRKAATDKVSLEADRLRRDAGIDDGNGERDLNDFYSDIQTDAESGFT
825727..826236                     DedA family protein; BS654_04510                                                     N/A                 Shigellaflexneri4cMEWINALMNYFVLHPYRLWGLLFIIAFTKSTLLISAILPPASIMMATVITVSKTTLSPWEAGITVMSGAWCGTIVNYHLGIIIGHIPQLACIISSRSNTIERVRLQLQNNSVSILFTSRFIAVLRYIAPLVAGMLQLHPVKVYTVSLISAASWSALYVGSFSFVLPFFS
complement(826325..826585)         PHAGE_Entero_mEp460_NC_019716: Rz lysis protein; BS654_04515; phage(gi428782373)     2.85e-48            Shigellaflexneri4cQCATSKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDGIISDQTALRMLQEYIRIQCLGG
826561..826638                     pyrimidine monooxygenase; BS654_04520                                                N/A                 Shigellaflexneri4cFQLLKWHTEFGHLNRGDMLTSEQHR
826643..827811                     PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BS654_04525; phage(gi24373865)       5.58e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPSQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITVHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
827768..828262                     hypothetical protein; BS654_04530                                                    N/A                 Shigellaflexneri4cMDTGKTLTRWPVFVDHFSGGKTGNMFNLMLTSKKLTKTAINEALRRMKKAGLNKSELEAFLRDMINGKQKSWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKCKMAELLNDAHPKWSLRTCERRIEHWLKVAEFILYKPMVMAFGIEKKVIAF
828452..828528                     tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
828530..828606                     tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
828609..828683                     tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGCACCA
828687..828761                     tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
829095..829283                     hypothetical protein; BS654_04555                                                    N/A                 Shigellaflexneri4cMMLLFRGEELAFSSAFSPVTIRKIMKCPSGEEDRRKKDPPAKTLGMNSFRYSDCWRVKFLMN
829393..829533                     PHAGE_Entero_SfI_NC_027339: putative lysozyme; BS654_04560; phage(gi849250281)       4.09e-12            Shigellaflexneri4cMAFFLSDSTGLSGGRDMYQMEKISTGIAYGTSAGSAGYWFLQWLDQ
complement(829574..830730)         PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_04565; phage(gi21231087)            1.64e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDLHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
830782..830898                     PHAGE_Entero_Sf101_NC_027398: replication protein O; BS654_04570; phage(gi849122306)     2.49e-17            Shigellaflexneri4cSGYLSQRWNDEKPETIQPQSRPSSAITVSKTGYVFFDR
831006..832865                     PHAGE_Entero_Min27_NC_010237: putative replication protein P; BS654_04575; phage(gi170783639)     0.0                 Shigellaflexneri4cMRPSELSDLLWAQVDRVAPHLLPNGKIEGHEWVAGNVNGDKGNSLKVNLIGKKKWADFAEGDGGDMLDLWMACRGINLHQAMQEAKAFLGIKDDDHHFDARREKKFSRPDRKKIARYVTRTESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELDALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEIDCMSYAQYGISALSVPFGGGKGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTLPYKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINAFYGKQQYLFNPPWESLADKFQFREAELTLVNGVHGHGKACPLNEPILLADGTWTTHGNVKIGDQVASVDGNPSTVTGIFPQGVRDVYRVTFEDGRYVDCAGDHLWEVTSRGFTKGEKRRVIDTFGLKRLSETKRHKNGVRIPEITGDFGDHSEPLAWVIGSLLGDGSLSNGSVKFSNVEPYMIERMKAELPDYNFSGDGKDWLISTARGQVNPLMETLRGYGLMGCTAKNKFIPRVFFSANKSTRIGMLCGLLETDGYVEKDGTLVFSSASEELRNEVVNKNWPPS
complement(832840..834008)         PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BS654_04580; phage(gi24373865)       5.86e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPSQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITAHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
834101..834979                     PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; BS654_04585; phage(gi18249882)     3.36e-179           Shigellaflexneri4cMMTFNLREQQKRLQARMDELRAEIAFAQKGEKPWPYRSCLMREGRGYCEKHGEYHTHILVWSDRNGEDREEISCCPDCLIAEANDLTMELSSIKAEELTDNAGIALRFRDCEFDNYLEVNPGAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHLAVAMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTADEVIERYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWAFISPRIADRITDGGRNWLSFNWPSYRSRIRGVAA
834976..836367                     PHAGE_Entero_phiP27_NC_003356: putative helicase; BS654_04590; phage(gi18249883)     0.0                 Shigellaflexneri4cMTTPVWRNDDLEGAVIGAFFLRGADPEVMDILATLPADVFSVRAYQDIYTGICRQARVSGVIDPVLLCNEMPELAPVITDTGRKTWVKSSLEHYVAALRRNAALRDAEKTLNEALQKLRDAHTCEAAEDALKDAQNMMVTLSTGKGVIQPVHIDDVLPEVVERVECRNQGLEKSRTLMTGIDELDAKTGGMEPGDLVFIAARPSMGKTELALDIIDKVTEQGHGVLLFTMEMANIQIGERMVSAAGGMPVSRLKSVAHFEDEDWTRFSQGVGRMTGRNIWMVDQANLAIDEICATTKHHLIKYPETALVVVDYLGLIKTRTTGRHDLAVGEISKGLKGLAKSGGFPLIALSQLSRGVESRPNKRPMNSDLKNSGEIEADADIILMLYRDEVYNPDTQARGIAEINITKQRNGSLGTIYRRFYNGHFLPVDQESARVLSTPMKPGNPRRYSNKRTDSSKMERFF
836379..836621                     PHAGE_Entero_phiP27_NC_003356: hypothetical protein; BS654_04595; phage(gi18249884)     5.16e-48            Shigellaflexneri4cMTFTPEQLRKHAQEMLRHAEQLEKTGITKDAIRKDMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEALR
836716..836916                     PHAGE_Shigel_Stx_NC_029120: NinH; BS654_04600; phage(gi985761277)                    1.64e-29            Shigellaflexneri4cMSVKIQTIPELLIQTRGNMTEVSRMLNCNRATVRKYAEDKEGKGHAIVDGVLIVHRGWDRGKDSDA
836909..837289                     PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; BS654_04605; phage(gi985761278)     1.63e-79            Shigellaflexneri4cMRDIQQVLERWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMVICGCMARLNRNNNDLHDLLVDYYVFGMTFMTLARKHGCSDGYIGKKLQKAEGVVEGMLMMLGVRLEMDKYIEHP
837489..837565                     tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
837567..837643                     tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
837646..837721                     tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
837725..837799                     tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
838092..838307                     PHAGE_Entero_VT2phi_272_NC_028656: holin; BS654_04630; phage(gi966197762)            4.87e-35            Shigellaflexneri4cMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVRPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
838326..838940                     PHAGE_Stx2_c_86_NC_008464: hypothetical protein; BS654_04635; phage(gi116221997)     4.94e-40            Shigellaflexneri4cMNQRFNHLENEITELNKKLSALVSSEDENKRRDEHYAAIYDYCHKVAHETFMKFLQEKFLPAALSEKESAYLRPEYVITVNSAGEEEHKSDFIASAPDKDQEPHRPFRVSCEEGEFVVYENGKPVRASHHHCLKIINLAIRCLKDENTRVMKRIGRCMGYLQVAAEIEALASGADMDAAVREALLRDFNTPPLRKSLMTGSSRG
839006..839539                     PHAGE_Entero_mEp460_NC_019716: endolysin; BS654_04640; phage(gi428782372)            5.35e-127           Shigellaflexneri4cMSAKIKYGLSAAVLALIAAGASAPQILDQFLNEKEGNHTTAYRDGSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDVGRDCRIRSNNCYGQVIRRDQESALACWGIDQ
839536..839940                     PHAGE_Salmon_HK620_NC_002730: endopeptidase; BS654_04645; phage(gi13559860)          7.88e-90            Shigellaflexneri4cMSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGELKLANATITDMQQRQRDADALDAKYTKELADAKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDG
840002..841158                     PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_04650; phage(gi21231087)            1.25e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPLQPSGKNIIRWLLAA
841186..841509                     PHAGE_Entero_N15_NC_001901: gp1; BS654_04655; phage(gi9630465)                       2.82e-23            Shigellaflexneri4cMPVHLKLLIARWELTAEQAVAQQLKNQVSKGNLIDTGFCIFALSKLAMALSSTLDSIPLSMQRQFPDLTPRHIDHLKILIAKGANQCARAGDKLPDLLDEYIRTTTE
841481..843408                     PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; large terminase subunit; Lambda gpA homolog; BS654_04660; phage(gi169257235)     0.0                 Shigellaflexneri4cMNISEQQLSNMMVAVTIALQPLVRVLPVTAVEWADQNYYLPKESSYGEGEWKTLQFQVAIMNCMGNDEIRTVNLIKSARVGYTKMVLGVIGYFIEHKSRNTLLFQPTDSAAEDFMKSHVEATIRDVPCLKKLSPWLGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKIKGSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDDATSFGLKWEKGKPETVYYLCEHNGCVIRQSELDQTGGRWICDNTGMWTCDGLTFFSASGNEIPPPRSITFHIWTAYSPFTTRVQIVCDWLDALKDPNGVKTFVNTTLGETWEEAVGEKLDHQVLMDKVVPYTATVPVRVVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDEEETLLRVDAAINKKYRHADGTEMTISRVCWDIGGIDGEIVYQRSKKHGIFRVLPVKGASVYGKPVITMPKTRNQRGVYLCEVGTDTAKEILYARMKADPTPVNEATSYAIRFPDNPEIFSQTEAQQLVAEELVEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQLDLAVQLHPARMQLHNRPLKNWQRSCPEEMVTVAGA
843392..843595                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; BS654_04665; phage(gi169257234)     6.48e-18            Shigellaflexneri4cMVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLNELNRAINDAESVLGTTRRRRPLGVRL
843592..845185                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage portal protein; Lambda gpB homolog; BS654_04670; phage(gi169257233)     0.0                 Shigellaflexneri4cMKRTPVLIDVNGVPLRESLSYNGGGAGFGGQMAEWLPPAQSADAALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRLNWRWLGMRETTAKSFVGEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTETTQLFRTRFKAVSPKRVDTPGHGMGNHFLRAGVEVDRYGRAIAYHICEDDFPFSGAGRWERIPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERMKMLDSLQATQLQSAIVKAMYAATIESELDTEKAFEYIAGAPQGQQDNPLINILEKFTRWYDTNNVTLGGVKIPHLFSWRCAEPADSAGFRQWIFGATGAAAVYCSRSWRFLRTVVPLLEGQLLKCPRLRQVVALFYGAAKIYCGPAGHADVFLLAGRGASSGDYSSATGAFFLPGAFSLVTGRVDLRKNGHRAQGGPGIGDAHGRTEHVERTGTDGRRLSGHFPPAGQGIRRARKSRTLTSGVDSPGVSAADSGESQAGRGDNITDVA
845175..846680                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage prohead protease; Lambda gpC homolog; BS654_04675; phage(gi169257232)     0.0                 Shigellaflexneri4cMRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQQQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATGAFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVDAVMGTEAAVFEGQSGIEAELADELINASDAISVMAATLNTHDTGGTMPQLTATEAAAQENQRVMGILTCQEAKGREQLATMLAGQQGMSVEQARAILAVAAPQQSGVSAQSEADRIMACEEAKGREQLAATLAAMPEMTVEKARPILAASPQANAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLAAASGRAEPVSASTTAMFEHFMANHSPAAVQGGVPQTSADGDADVKMLMAMP
846717..847064                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; BS654_04680; phage(gi169257231)     2.82e-54            Shigellaflexneri4cMVTKTITEQRAEVRIFAGNDPAHTATGCSGISSATPALTPLMLDEDTGKLVVWDGQKAGHVVGILVLPLEGTETVLTYYKSGTFATEAIHWPERVDTHKKANAFAGSALSHAALP
847122..848150                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; BS654_04685; phage(gi169257230)     0.0                 Shigellaflexneri4cMGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLNGPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGEQFETVEVDFGRSVGNNITQAGGTEWSAQDRDTFDPTHDLDAYCDFASGTINIAIMDGKVWRLLNGFKLFREKLDTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPDGTLVLGNTAAEGIRCYGAIQDAQALSEGVVASSRYPKHWLTVGDPAREFTMTQSAPLMVLPDPDEFVVVQVK
848202..848588                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; BS654_04690; phage(gi169257229)     3.65e-12            Shigellaflexneri4cMATKEENLKRLCELAERLGREPDVSGSAADIAQRVAELEEELGDAGEVAEPDTYSPSKDDPTAHKGESVPEQPGIVTGDETGQVTVVALATLHTKCNGSVIFVSPGTSFRVSAEVAASMAAGGLAKRQ
848600..848977                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; BS654_04695; phage(gi169257228)     5.10e-34            Shigellaflexneri4cMDGFDNLFDAALAGVNEVILRDMGISAVITSGELEGTHLTGVFDDPESISFVAGGIRLEDSSPCLFVKTADISQLRRQDTLTIGDDSFFVDRITPDDGGCCYIRLRRGSPAPQNNARMRRYDEGT
848964..849548                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-tail assembly protein; Lambda gpZ homolog; BS654_04700; phage(gi169257227)     3.92e-100           Shigellaflexneri4cMKGLENAIRNLNSLDTRMVPQTSAWAVNRVAAKIVSVATRQVAQNTVAGDNQVKGIPLKTVRERVRLLKASPSGKMYARMRVNRGNLPAIKLGTAQVRLARSRHGSNSRHRGSVLKVGKYLFRDAFIQQLANGRWHVMRRIDGKNRYPIDVVKIPMSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
849545..849946                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; BS654_04705; phage(gi169257225)     9.60e-65            Shigellaflexneri4cMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLIDTMIPLGFNYQRDNEMATWAMAEITYQITYTN
849957..850697                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major tail subunit; Lambda gpV homolog; BS654_04710; phage(gi169257224)     9.78e-106           Shigellaflexneri4cMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAP
850756..851142                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail assembly chaperone; Lambda gpG homolog; BS654_04715; phage(gi169257223)     3.59e-43            Shigellaflexneri4cMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
851151..851480                     PHAGE_Phage_Gifsy_1_NC_010392: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; BS654_04720; phage(gi169257222)     3.13e-42            Shigellaflexneri4cMQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
851452..854493                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; BS654_04725; phage(gi169257221)     0.0                 Shigellaflexneri4cMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVSSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVGQLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDTINQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETGKRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYPWTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNETEAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYSQQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKNELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGDKQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKRYWQELEVAQGDWKNGAMRAFQNFTADADNAAGTAEQMFTVAFSSAGNALATFCTTGKLNFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIEINNDGTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR
854493..854822                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tip assembly protein; Lambda gpM homolog; BS654_04730; phage(gi169257220)     8.53e-57            Shigellaflexneri4cMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTADFEQVVN
854822..855520                     PHAGE_Entero_lambda_NC_001416: tail component; BS654_04735; phage(gi9626261)         1.13e-156           Shigellaflexneri4cMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
855525..856268                     PHAGE_Entero_mEp460_NC_019716: tail fiber component; BS654_04740; phage(gi428782332)     2.95e-176           Shigellaflexneri4cMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
856166..856807                     PHAGE_Entero_cdtI_NC_009514: putative tail component; BS654_04745; phage(gi148609399)     9.62e-130           Shigellaflexneri4cMAATHTLPLASPGMARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
856868..860347                     PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; BS654_04750; phage(gi148609400)     0.0                 Shigellaflexneri4cMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKSTAGISIS
860415..861014                     PHAGE_Entero_BP_4795_NC_004813: outer membrane protein Lom precursor; BS654_04755; phage(gi157166058)     2.02e-133           Shigellaflexneri4cMRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
861078..862489                     PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; BS654_04760; phage(gi18249920)     6.72e-68            Shigellaflexneri4cMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTGKIPQKILFTESWRALSATDGETLTLAGLLLRTREKLTVIKSSDLSGGSHTEAHDWDRWGFQCPVLPPERIHPHNFSLRDVQSIHYRGHIAPCPGCRMHMSLAQCPGFLFAHRGA
862440..863063                     PHAGE_Escher_Av_05_NC_025830: tail fiber protein; BS654_04765; phage(gi730985066)     3.68e-43            Shigellaflexneri4cMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK
863063..863242                     PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; BS654_04770; phage(gi849255281)     1.07e-06            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(863243..865006)         PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; BS654_04775; phage(gi169257209)     3.16e-09            Shigellaflexneri4cMKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGAATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPPSLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPDLPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRLPELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(865194..865274)         PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; BS654_04780; phage(gi16130281)     2.05e-09            Shigellaflexneri4cIYNHAQYLDKRREMMLWWADYWLDEKV
complement(865495..865674)         hypothetical protein; BS654_04785                                                    N/A                 Shigellaflexneri4cMKEPAARWSGLTFISTLWQAHRLPRCLVNHSARWRNAIWYHLKVLKTTFCLFTFPFRSS
complement(865589..866065)         kinase inhibitor; BS654_04790                                                        N/A                 Shigellaflexneri4cMKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDVERIDVDEGASGAMVGFNVHFHSLASASITAMFS
complement(866124..867413)         PHAGE_Mycoba_Lukilu_NC_041901: chaperone for tail fiber formation; BS654_04795; phage(gi100190)     7.35e-06            Shigellaflexneri4cMTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
877567..877580                     attR                                                                                 N/A                 CAACCATAACCTGG

#### region 4 ####
1005503..1005514                   attL                                                                                 N/A                 CCTGTGGTCGCA
1013395..1014069                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; BS654_05540; phage(gi209447151)     8.59e-10            Shigellaflexneri4cMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLSDPLTPELLRALIREMKGGIR
1014066..1014393                   PHAGE_Stx2_c_1717_NC_011357: transposase; BS654_05545; phage(gi209447152)            1.52e-34            Shigellaflexneri4cMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFTKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDIA
1014413..1016014                   PHAGE_Stx2_c_1717_NC_011357: transposase; BS654_05550; phage(gi209447153)            0.0                 Shigellaflexneri4cMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGGLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
1016049..1016315                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; BS654_05555; phage(gi24114950)     4.50e-59            Shigellaflexneri4cMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
1016300..1016548                   PHAGE_Salmon_HK620_NC_002730: endopeptidase; BS654_05560; phage(gi13559860)          1.18e-41            Shigellaflexneri4cMSGNIGANPVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNARELKLANATITDMQQRQRAADALDAKYTTELANAK
complement(1016554..1017722)       PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BS654_05565; phage(gi24373865)       5.58e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPSQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITVHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
complement(1018005..1018217)       PHAGE_Entero_933W_NC_000924: protein MokW; BS654_05570; phage(gi9632542)             3.20e-41            Shigellaflexneri4cMLCTCRLASYMPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESRK
complement(1018388..1019053)       hypothetical protein; BS654_05575                                                    N/A                 Shigellaflexneri4cMTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASEIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWDYNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE
complement(1019222..1019578)       PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; BS654_05580; phage(gi100050)     6.35e-12            Shigellaflexneri4cMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(1019636..1020058)       PHAGE_Shigel_Stx_NC_029120: LygF; BS654_05585; phage(gi985761265)                    5.57e-67            Shigellaflexneri4cMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDGEIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
complement(1020073..1020819)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage DNA replication protein; DnaC homolog; BS654_05590; phage(gi169257254)     7.88e-99            Shigellaflexneri4cMKNIATGGVLERIRRLTPQHVTAPFRTVAEWREWQLAEGQKRSEEINRLNRQLRVEKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFAFSGKPDTGNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEVMKTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
complement(1020826..1021597)       PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; BS654_05595; phage(gi418487646)     9.92e-54            Shigellaflexneri4cMASNWIKLEVITPDKPEIFRLAEILNIDPDAALGKVIRFWAWADQQMIDGNADCNARGVTKSAIDRITFMSGFADALIQVGWLVENDGGLSLPNFERHNGKSSKKRAVTNERVTKIRELKRKGNAASVTQTDQKALPVEEEDLNTDLPLNPPRQKRASKKFEPEAIELPDWLPETLWHEWVRFRQALRKPIRTEQGDTGTGKIPSAGFYTAGDSTQHRQIPGPVRAERCSADVAPTGHRLVAGQCDPARLQGVA
complement(1021675..1022097)       PHAGE_Entero_mEp237_NC_019704: CII protein; BS654_05600; phage(gi435439306)          1.03e-09            Shigellaflexneri4cMKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELSLVPGKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSPGDSVVVH
complement(1022081..1022308)       PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; BS654_05605; phage(gi422936651)     9.89e-13            Shigellaflexneri4cMLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQEASGGELQYDPKVYDEYRKAKRPGKVIHENQA
1022385..1022792                   PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; BS654_05610; phage(gi401817574)     5.09e-39            Shigellaflexneri4cMKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPESEQKALLSEMRARVENFNKLFEELLKARKRSANK
1022995..1023150                   PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; BS654_05615; phage(gi472340166)     2.82e-11            Shigellaflexneri4cMNTIDLGNNESPVYGVFPNQDGTFTAITYTKSKTFKTEAGARRWLGRHSGE
1023152..1023355                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; BS654_05620; phage(gi401817573)     1.67e-16            Shigellaflexneri4cMNETELKHVIALLLEDAKRLQQLEPNAGTGARIWLAKEALESGDYDSEEAFYKAEGRAGYSPGLGGV
complement(1023332..1023622)       hypothetical protein; BS654_05625                                                    N/A                 Shigellaflexneri4cMITDVWKYRGKSTEPEDYEGLHKYMLSLGFRRTIPHGDGSYNQLPDGTYVSEKGGDIYQIRSQISDYADRLSGYRASVFVCEFSQCAWYLYPAKTR
complement(1023597..1024870)       PROPHAGE_Escher_CFT073: transposase insC; BS654_05630; phage(gi26249447)             5.65e-64            Shigellaflexneri4cVIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERDCVSRSRWTAVIVRHCTGRLPAASTVKQYRTSCWERWNAASATIFRRLQWSGRIMVHATGLMKHASSPGCWDLNRRTRRCGVRRVTEQRASKRSVTTSVSCPNQTGRQQRTLQRRSSIITNGIRIVRWVIARHGNICGSGLVMGVITDVWKYAG
complement(1024989..1025240)       hypothetical protein; BS654_05635                                                    N/A                 Shigellaflexneri4cMPRAHSRIHRITKFTLKRADISQQLNRCRQLVLHTAMSLFTTGSALPPFKFHRQDRLFMDTGNAPSCCARFYFTTSGLWWYLY
1025373..1026221                   PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; BS654_05640; phage(gi428782357)     3.97e-68            Shigellaflexneri4cMLNVAIENQNGWNYSAPAPHKTGAGIATPTMTTAHNRAQAVFLCVKHSHIQIMVGRAGQPQGWPVSVVTGCSNPVRLTTHEIATSGGESFKLTIEAAIMATILTLSHPDATIENGRAVTTSVAVAEFFRKMHKNVIQKIETLECSPEFNRLNFKPVTYTDAKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIAEFDRMEAELRQNNTPPADKMIPGDGRTLVVHFDKFGNVEFTETVPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLLSLK
1026238..1026519                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; BS654_05645; phage(gi169257260)     2.64e-07            Shigellaflexneri4cMNPMLDYCFTSAPQQTITHTGIKNLLWIIKKNLQKGDPDLIPCAYGLCDRQVSPDKAYTAELIYMHGTMMRKKKRKYCSEICAEKDQMAHEL
1026735..1027864                   PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_05650; phage(gi21231087)            3.44e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKSTAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGSWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRLLAA
complement(1027889..1028533)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage exodeoxyribonuclease VIII-like protein; BS654_05655; phage(gi169257262)     1.27e-49            Shigellaflexneri4cMSTKPLFLLRKAKKSSGEPDVVLWASDDFESTSTTLDYLLVKSGKKLSNYFKAVATNFPVVNDLPPEGEIDFTWSERYQLSKDSMTWELKPGAAPDDVHHQDNAQETKELAGGQEENAQADAHEDCQDCEVSVATLRFTQRLLHIFTYAAGDLKYLHHATREQRKHITALEMDQENSYVQNLLLAIRGMAEPTTLDNAALLRLTDAIKAEVYWQ
complement(1028633..1028865)       racC domain protein; BS654_05660                                                     N/A                 Shigellaflexneri4cMVVSAIASTPHIGYVIKTENKETPFTVVDIDGLSGNFKTLVEGATKMCLVYIGNNLPAEKKPNFWQILQNKVKSGA
complement(1028877..1030033)       PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_05665; phage(gi21231087)            1.72e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
1030099..1030716                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; BS654_05670; phage(gi730985066)     1.15e-43            Shigellaflexneri4cMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQRIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPNSLGRLYPVVMAAKSDIVRDVMTWGDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
1030716..1030895                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; BS654_05675; phage(gi849255281)     7.57e-08            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRPPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1030896..1032722)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; BS654_05680; phage(gi169257209)     4.04e-05            Shigellaflexneri4cMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSDDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
1033213..1033344                   PHAGE_Entero_P88_NC_026014: DNA invertase; BS654_05685; phage(gi744692743)           3.20e-12            Shigellaflexneri4cMLIGYVRVSTNDQNTDLQRNAFICAGSELIVARMGSWPEVVMA
1033604..1034599                   6-phosphogluconolactonase; BS654_05690                                               N/A                 Shigellaflexneri4cMKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESVLPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDYSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
complement(1034640..1035593)       PHAGE_Burkho_phi1026b_NC_005284: gp58; BS654_05695; phage(gi38707948)                1.36e-08            Shigellaflexneri4cMKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFSLLINLWTDDKDNLWTNIVERQRHALQEIS
1035777..1036829                   isomerase; BS654_05700                                                               N/A                 Shigellaflexneri4cMKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
1036905..1038338                   anion permease; BS654_05705                                                          N/A                 Shigellaflexneri4cMNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKLIAYLLIGKIGNTMLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
1038521..1040701                   hydratase; BS654_05710                                                               N/A                 Shigellaflexneri4cMIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
complement(1040842..1042125)       acyl-CoA thioesterase; BS654_05715                                                   N/A                 Shigellaflexneri4cMNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEALNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEEKK
complement(1042260..1043030)       PHAGE_Entero_HK106_NC_019768: integrase; BS654_05720; phage(gi428783305)             0.0                 Shigellaflexneri4cMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
1051998..1052009                   attR                                                                                 N/A                 CCTGTGGTCGCA

#### region 5 ####
1203285..1203298                   attL                                                                                 N/A                 CAGCTCCGTCTGGA
1213453..1214466                   PHAGE_Mycoba_Butters_NC_021061: integrase; BS654_06610; phage(gi479336499)           2.39e-12            Shigellaflexneri4cMKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
1214405..1215019                   diguanylate phosphodiesterase; BS654_06615                                           N/A                 Shigellaflexneri4cMAVPECAHRLMRCRPSLVRGRAAQVNPGGFTTPARRPSVPHRTAGCGKSSLRPLMAGSSPSLPDGSNPSAAIVQSASDVQCSRLLKTTMEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVNQWRNTTMNANEPSTSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFQARASTATETSVKPDACDSPPSG
1215145..1215705                   PHAGE_Sodali_phiSG1_NC_007902: resolvase; BS654_06620; phage(gi89886020)             7.58e-33            Shigellaflexneri4cMTGQRIGYIRVSTFDQNPERQLEGVKVDRAFSDKASGKDVKRPQLEALISFARTGDTVVVHSMDRLARNLDDLRRIVQTLTQRGVHIEFVKEHLSFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKSLSSERIAELRQRVEAGEQKTKLAREFGISRETLYQYLRTDQ
1215708..1218674                   PROPHAGE_Xantho_33913: Tn5041 transposase; BS654_06625; phage(gi21231545)            1.01e-45            Shigellaflexneri4cMPRRSILSAAERESLLALPDSKDDLIRHYTFNDTDLSIIRQRRGPANRLGFAVQLCYLRFPGVILGVDELPFPPLLKLVADQLKVGVESWNEYGQREQTRREHLSELQTVFGFRPFTMSHYRQAVQMLTELAMQTDKGIVLASALIGHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLADAHRRRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHMLEHIERLKAWQALDLPTGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALATEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDAFAAIEAVMSWDSFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVLKLRAAPAAKNVLDAIEVLRGMNTDNARKLPADAPTGFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATDCEQYLHERLTLLEAQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMVLPHVKITELLLEVDEWTGFTRHFTHLKSGDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAGHWGDGTTSSSDGQNFRTASKAKSTGHINPKYGSSPGRTFYTHISDQYAPFHTKVVNVGLRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDAAYDALKPMIGGTLNIKHVRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERAAHALRGNGHAVDDSLLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
1218741..1219118                   N-acetyltransferase; BS654_06630                                                     N/A                 Shigellaflexneri4cMKDYLCKKLFNRLSGTLVIRARCGNNITGLACCNILYPSPRYSGQLHIKELYVSQCDRNKGTGKAIMRFIARLALEQECLSLSWNAEKSNPGANRFYQALGGRINDHIVNYYLHGESLSKLASGI
complement(1219319..1219978)       PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; BS654_06635; phage(gi937456276)               3.62e-167           Shigellaflexneri4cMEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA
1220032..1220223                   hypothetical protein; BS654_06640                                                    N/A                 Shigellaflexneri4cMILFHYGESWNLLRADQRLIFAKSWPRASRYQQGHQDLFILRSDLPSQVFIRRKVRRVMLPTY
1220257..1220954                   PHAGE_Entero_P1_NC_005856: InsA; BS654_06645; phage(gi46401643)                      3.53e-60            Shigellaflexneri4cVASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSRPRAYSRAVTSSSARKWTNSGDTSGLNRASAGCFTRMTGSGRRLLRTYSVNALWRRWGVLACCHPLTWYGRMAGRCMNPARESCTSASDIRSELSGITIGSTWHGWDGSRCRSQNRWSCMTKSSGIITNTINAA
1220971..1221093                   transcriptional regulator; BS654_06650                                               N/A                 Shigellaflexneri4cVGAALFSLYESKGWLTRHLGYREVTITEKGYAAFKTHFHI
complement(1221071..1221483)       TetR family transcriptional regulator; BS654_06655                                   N/A                 Shigellaflexneri4cSWQHHQIFYVITLKVLDVLYVIAMEQKYIVHGLQKNSMKLSKINPFYANKVFHRMHYMHSALWGILLVAYWKIKSIKSLKKKGKHLLLIVCRHYYDKLSNYLITKVQSQPSYSALNSYADKNNLNVKVGLAA
1221523..1221798                   PHAGE_Entero_P1_NC_005856: InsA; BS654_06660; phage(gi46401643)                      8.23e-63            Shigellaflexneri4cMASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
1221717..1222220                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; BS654_06665; phage(gi557307573)      1.33e-118           Shigellaflexneri4cMPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
1222217..1222666                   hypothetical protein; BS654_06670                                                    N/A                 Shigellaflexneri4cMSWSHYLSPDTNAATVNQTLKCDSKARADQPGACPTTYELYEGDATYRAAIDKALNPVGLNGMFGEDGYMDGPDGGAYPVNINGTTWVEGGGCKAHACGWDYIVTLYNPKTHKVVGYYYNIDPGYLIWFGETGVHEFAYLVRDYVNKTN
1223059..1223880                   PHAGE_Yersin_fHe_Yen9_04_NC_042116: hypothetical protein; BS654_06675; phage(gi100019)     2.89e-59            Shigellaflexneri4cMRLASRFGYAANQIRRDRPLTHEELMHYVPSIFGEDRHTSRSKRYAYTPTITVLESLQREGFQPFFACQTRVRDPGRREYTKHMLRLRRAGQITGQHVPEIILLNSHDGSSSYQMLPGYFRAICTNGLVCGQSLGELRVPHRGNVVEKVIEGAYEVVGVFDRIEEKRDAMQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQTIQENMLKGGISGRSAKGKRIHTRAIHNIDTDIKLNRALWVMAETLLESLR
1223901..1224127                   antirestriction protein; BS654_06680                                                 N/A                 Shigellaflexneri4cVIQAPESPDAPEALPGCRSISDDDLCAWCTRLLYRPGEISLCRLSIQAMASGHPSVTGTVTRTAVRNFSRISFIPGA
1224222..1224695                   PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; BS654_06685; phage(gi162135127)     9.90e-17            Shigellaflexneri4cMKTLSQNTTASACAPETGLQQLVATPVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGNRAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRIID
1224711..1225187                   hypothetical protein; BS654_06690                                                    N/A                 Shigellaflexneri4cMQQLSFLPGNMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
1225250..1225471                   PHAGE_Klebsi_vB_KpnP_KpV41_NC_028670: hypothetical protein; BS654_06695; phage(gi966198919)     5.55e-15            Shigellaflexneri4cMRIITRGEAMRIHQQHPASRLFPFCTGKYRWHGSAEAYTGREVQDIPGVLAVFAERRKDSFGPYVRLMSVTLN
1225471..1225584                   hypothetical protein; BS654_06700                                                    N/A                 Shigellaflexneri4cMFRHPGNEYDQMTSDAAVDEAILINAYIFTETGQRAG
1225634..1226008                   antitoxin; BS654_06705                                                               N/A                 Shigellaflexneri4cMSDKLSGITHPDDNHDRPWWGLPCTVRPCFGARLVQEGNRLYYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSGELNPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAPATTS
1226055..1226429                   toxin; BS654_06710                                                                   N/A                 Shigellaflexneri4cMKTLSDTHVREVSRCPSPVTIWQTLLIRLLDQHYGLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSTCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
1226429..1226917                   hypothetical protein; BS654_06715                                                    N/A                 Shigellaflexneri4cMKLALTLEADSVNVQALNIGRIVVDVDGIELAELINMVCDNGYSLRVVDESDQTSAECTPPFATLTGIRCSTAHITETDNAWLYSLSHQTSDFGESEWIHFTGSGYLLRTDAWSYPVLRLKRLGLSKTFRRLVVTLIRRYGVSLIHLDASAECLPGLPTFDW
1226929..1227126                   hypothetical protein; BS654_06720                                                    N/A                 Shigellaflexneri4cMKSLTTETALDILIAWLQDNIDCGSGIIFDNDEDKTDSAALLPCIEQAREDVRTLRHLQLLHQNR
1227211..1227774                   PHAGE_Pseudo_phiPSA1_NC_024365: DNA restriction methylase; BS654_06725; phage(gi658307732)     1.81e-05            Shigellaflexneri4cMSDITISRPEVVNGHTDVICSTSIRHILAVRKSTLLQIDTLIRQLAEISVLTESIGGKTAPDWAMKQDFRCGCWLMEKPETAMKAITRNLDREIWRDLMQRSGMLSLMDTQARDTWYRSLEYDNFPEISEANILSTFEQLHQNKDEVFERGVINVFRGLNWNYKTNCPCKFGSKIIVNNLVRWDRWG
1241961..1241974                   attR                                                                                 N/A                 CAGCTCCGTCTGGA

#### region 6 ####
1237604..1237615                   attL                                                                                 N/A                 TGGTAGTGTCCG
1249727..1250689                   PHAGE_Escher_HY02_NC_028872: putative tail length tape-measure protein; BS654_06880; phage(gi971750937)     1.06e-52            Shigellaflexneri4cMTLPVFITVIADHDKPQPSGCLLDNLSSAAVKTAGVLISFQAVLSAYQRVMEVGLQRASAERSIDFVFSKDANQVKDFTKSLAQTTGLDIAELQSQFAGFGASARESLGIQGSEELFRNMIGYSRLMGRSEEEIKRALTALSQMAGKGQIMAEELKGQLAEAVPGMVQVFAKATGKTEQELFDAMKKGALKSADTLQKVTQELNKQITAKGGWKAISESTQAQLGNLKNSWNTTLDSIFRGSENGLQDFTRSLTNLLNALGGSGKSLGESLGSLMTSMSHGVDSLTDISYRVRAFFDEVTLAYRPLNDTQRKIVDGEVAH
1250664..1250765                   transposase; BS654_06885                                                             N/A                 Shigellaflexneri4cLLMVKWHTEFGHLNRGDMLTSEQHRCSNEKKKF
1250746..1251914                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BS654_06890; phage(gi24373865)       5.07e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPNQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITVHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
complement(1251920..1252354)       PHAGE_Staphy_SA1_NC_027991: phage conserved protein; BS654_06895; phage(gi937456837)     1.59e-68            Shigellaflexneri4cMENFIDTLENWRDQKQIISVICKDGIKIDDSIITSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDVSAATGRTSTTNDGGATSKKNTGNTTTSLGSPMLTCKELFSYSASELSDEALKARVTCSKSVSVKNGESTFTASANE
complement(1252351..1252530)       hypothetical protein; BS654_06900                                                    N/A                 Shigellaflexneri4cVVRRLRFSGPKTSIICSPMTSLKTSIKTITISDTGCLEIQGASLVNPVVPLSHEIISWW
1252442..1253715                   PROPHAGE_Escher_CFT073: transposase insC; BS654_06905; phage(gi26249447)             1.09e-64            Shigellaflexneri4cVIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEPKKAISDGALTGSSSAVITERDCVSRSRWTAVIVRHCTGRLPAASTVKQYRTSCWERWNAASATIFRRLQWSGRIMVHATGLMKHASSPGCWDLNRRTRRCGVRRVTEQRASKRSVTTSVSCPNQTGRQQRTLQRRSSIITNGIRIVRWVIARHGNICGSGLVMGVITDVWKYAG
complement(1253727..1253951)       PHAGE_Salmon_BPS17W1_NC_042097: hypothetical protein; BS654_06910; phage(gi100089)     1.88e-34            Shigellaflexneri4cMIYSNQLRYTGKDGVYFHLQGQPDNFLSLSATENMEFDSPMMVTTQNMQSGQTVTDNVMRSPRTISISGVVVVGE
1254111..1255320                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; BS654_06915; phage(gi157166066)     6.85e-70            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGSDRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTTAVGGFYLRQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
1255608..1256737                   PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_06920; phage(gi21231087)            1.47e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
1256750..1256761                   attR                                                                                 N/A                 TGGTAGTGTCCG
complement(1256762..1257694)       PHAGE_Bacill_WBeta_NC_007734: putative site-specific recombinase; BS654_06925; phage(gi85701406)     1.19e-11            Shigellaflexneri4cMRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSLSFKDLGKSAFSGKHLKGGLGDFLTAIEKGLVKAGDTLLIESLDRLSRQDIDIASELLRRILRAGVDVVTLSDGEHYTRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKKELISEGIKVSRRCPAWLRLNDDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLNDEGHLSLNQYTPKQKGWSDTAVKKLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRVQQLNTGQYGRASVSSNPLSVNLFRGIIKCEVYWQ

#### region 7 ####
1329490..1329510                   attL                                                                                 N/A                 CGGTGTAGTTAATGGTGTAGT
1329537..1330766                   PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; BS654_07310; phage(gi399528791)      9.04e-69            Shigellaflexneri4cMSRALNKLSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLTWYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQEALKPVTVGDALTYWLESYAKENRVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQVAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGELLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWTERLGILAGTHENVTTLPVARRK
1331141..1331329                   PHAGE_Entero_P4_NC_001609: transcriptional regulator; BS654_07315; phage(gi9627517)     1.36e-10            Shigellaflexneri4cMLSTDRFIREKECEKLTGLSRSCRYRLEKAGQFPSRRKLGGRSVGWSLSEVLAWKDSCKAVH
1331387..1331836                   hypothetical protein; BS654_07320                                                    N/A                 Shigellaflexneri4cMKIEYTPERGRGFVRPGETGKPQNWGFSGIKKAAPKWSRLSEQITRCAVCVCDPKHKHGDDSRYQAGGQCNQSGSVRCHNCEVLSFDEYSLRYFSRAKEHGANRSDSCSFFLRRLFRAGDVFSVDSSLVIVCACKAMRRSTSHHGADSFY
complement(1331833..1332012)       hypothetical protein; BS654_07325                                                    N/A                 Shigellaflexneri4cMSTHKNERRGNPPFQFRLDPDLREKMEKAQQQDGDDSLAAWIKRIIRKELQQRGIEPKG
1332142..1332342                   host cell division inhibitor Icd-like protein; BS654_07330                           N/A                 Shigellaflexneri4cMVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARSRCPSGCVAVFAARIRQGETYAQ
1332332..1332573                   hypothetical protein; BS654_07335                                                    N/A                 Shigellaflexneri4cMHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFALECIRYIATRSLNDAKNILVADCENGGGYASFFPGA
1332546..1332766                   hypothetical protein; BS654_07340                                                    N/A                 Shigellaflexneri4cMRDDRFNSLKQEFSGVPDDAADALSSMPELIRAAFFLLSTREYKSTGLMYISPPIMLISQRLFEKRRTGIAA
1332768..1333001                   hypothetical protein; BS654_07345                                                    N/A                 Shigellaflexneri4cMRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSRIATALITLLEPVIMELQEIDLLHDRYKEQHTGE
1333007..1333306                   hypothetical protein; BS654_07350                                                    N/A                 Shigellaflexneri4cMKLKYSGLTASGNTHPKFTRGDIYRDQYGGMVTIKGVAERRITYRREGYEYDCVMPVYQFRRDFTLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK
1333303..1335051                   PHAGE_Entero_P4_NC_001609: DNA primase; BS654_07355; phage(gi9627512)                3.72e-103           Shigellaflexneri4cMKLAPNVKKQPRGIKHKDTEVIIFAGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVVIYSEHRATFSKRVINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGRAQVVGSRLIVLADQPKYTGEGTGIKKITGGDPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKGVTQTNAITTDECDAFL
1335340..1335618                   hypothetical protein; BS654_07360                                                    N/A                 Shigellaflexneri4cMHTSGKFNKSFKKRRDRTEPKYRALDMTEHALKVAIRTIDRHAGEGYAKAHPELISAFMTTTAANFATLTEREIAEAEQVTTINVKTGEVES
1335615..1335920                   hypothetical protein; BS654_07365                                                    N/A                 Shigellaflexneri4cMSEPKFGEKFYKHNGRITILQISAATPGWWVETDEGSSPVASWELCVLSYPDRDVYQDILPVISTDKGMKPVDIKNMGFQCVMLTEKMMEEMKKNNAGSLH
1336395..1337222                   PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; BS654_07370; phage(gi23505451)     3.22e-33            Shigellaflexneri4cMQRIIELRQQKTAIKNQMRDMLENAEKENRSLNDAEGAKFDELRAKAESLDKDISRLEAIADEERSKPGKSSQTTDPAELRNYILTGETRALSTGVPADGGYTVIPELNTEIMRMLADESTMRRICTVKKISSNEFKQLVSAGGATVNHGEEGKAREQTSTPQINEVSIKLYPVYAYPRTTQEIVDFSDVDILSWLTGEIGDTFTETEESDLVVGDGDKKAKGFLSVPRAEKNDKERDFGTLQVIKPSESLAWTSADPLIDLKFALRKKYRKNAV
1337223..1337552                   PHAGE_Shigel_SfIV_NC_022749: major head protein; BS654_07375; phage(gi557307531)     6.55e-14            Shigellaflexneri4cMVNSTTAAKLQKVKNANGDYIWRDRLQAGDPDTLLGLPVEYLEFMPDNVIALGDFKRGYYIVDHETGVRTRPDNLTEPGFIKIFTQKYLGGGVVDSNAIKILALPEDDD
1337592..1338164                   PHAGE_Entero_IME_EF4_NC_023551: prohead protease; BS654_07380; phage(gi589893040)     5.33e-36            Shigellaflexneri4cMGEKIMKSMEIRSSEITTSGAGTLTGYVVRWDKLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTGRDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPRADNRRWWADLAGV
1338166..1339377                   PHAGE_Shigel_SfIV_NC_022749: portal protein; BS654_07385; phage(gi557307529)         2.45e-47            Shigellaflexneri4cMWPFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
1339374..1339712                   PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; BS654_07390; phage(gi9634168)     1.49e-34            Shigellaflexneri4cMNIGRLRDRITIQTLKQTRDITGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
1339709..1340005                   PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; BS654_07395; phage(gi526244642)     9.40e-10            Shigellaflexneri4cMTEELITLEEVKLHCRIDGDDEDQLISGYIAASLEACQIHIGRRFDDGLAFTPAIKIGCMMFIAHLYENRQIVADNAKTRVPMTIGALWTAYRDVGGY
1340005..1340445                   PHAGE_Bacill_phi105_NC_004167: hypothetical protein; BS654_07400; phage(gi22855043)     2.56e-25            Shigellaflexneri4cMPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRARGYSRQWDKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPLCQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE
1340438..1340611                   hypothetical protein; BS654_07405                                                    N/A                 Shigellaflexneri4cMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAKRLTDRDREVMECFRNR
1340667..1340993                   PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; BS654_07410; phage(gi593779760)     5.39e-15            Shigellaflexneri4cMDDIAVKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRLE
1340977..1342638                   PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; BS654_07415; phage(gi100002)     3.57e-100           Shigellaflexneri4cMTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV
1342652..1342933                   hypothetical protein; BS654_07420                                                    N/A                 Shigellaflexneri4cMTEAEILRLIRRVSGISQQADEQTTQPDSVTAENYARVVAEVMRRDGIQLNDADMRDIRIRVLEMLAYNRRVELYREKEKITYHWKKPERLRR
1343629..1343649                   attR                                                                                 N/A                 CGGTGTAGTTAATGGTGTAGT
complement(1343730..1345190)       Virulence sensor protein PhoQ; BS654_07425                                           N/A                 Shigellaflexneri4cMKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFYTLAQWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE

#### region 8 ####
1538281..1539477                   PROPHAGE_Escher_CFT073: transposase; BS654_08480; phage(gi26248352)                  0.0                 Shigellaflexneri4cMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFTALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
complement(1539491..1539853)       dienelactone hydrolase; BS654_08485                                                  N/A                 Shigellaflexneri4cMKHIQIRNSDMAWHIAANIQFPPNFDESKQYPAIISVHPFGSCKEQTSGNIYGKALAEKGYVVLAYDASFQGESGGPRWIEDPTQRVEDISRVIDYAVTLPYVDAERIGVLGVCGGCPY
complement(1539853..1540773)       hypothetical protein; BS654_08490                                                    N/A                 Shigellaflexneri4cMMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYPAIVVSHPGGGVKEQTAGTYAEKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDVSAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSMFRNGWENNVKSIDALPHIEAGSNARTSDISSEEYAIMPLAPMKEADAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPMQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
1540911..1541393                   PHAGE_Burkho_phi1026b_NC_005284: gp58; BS654_08495; phage(gi38707948)                2.09e-08            Shigellaflexneri4cMKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPILHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGYYHLFFF
complement(1541390..1542546)       PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_08500; phage(gi21231087)            1.22e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
1542650..1543060                   PHAGE_Azospi_Cd_NC_010355: hypothetical protein; BS654_08505; phage(gi168495118)     4.71e-11            Shigellaflexneri4cMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWVDVEPSLREFFCDNGDEWMHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVGVVFEHD
complement(1543074..1544347)       PROPHAGE_Escher_CFT073: transposase insC; BS654_08510; phage(gi26249447)             1.11e-64            Shigellaflexneri4cVIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLIIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERDCVSRSRWTAVIVRHCTGRLPAASTVKQYRTSCWERWNAASATIFRRLQWSGRIMVHATGLMKHASSPGCWDLNRRTRRCGVRRVTEQRASKRSVTTSVSCPNQTGRQQRTLQRRSSIITNGIRIVRWVIARHGNICGSGLVMGVITDVWKYAA
1544505..1545134                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; BS654_08515; phage(gi169257279)     1.65e-24            Shigellaflexneri4cMLEGRLSGGTAAEFCNSAVVALQAAGLDVCREYPVPERGDGCGGRIDIVVTDRNGVRCGIELDRNSPRQKSLLKIGAVETGICVLRRSDIARHTEQGILVIGGAVRQKKFDPLSVDLPDWLSETLWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG
1545141..1545887                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; BS654_08520; phage(gi169257280)     3.72e-100           Shigellaflexneri4cMKNIATGGVLERIRRLTPPHVTAPFRTVAEWREWQLAEGQKRCEEINRLNRQLRVEKILNRSGIQPLHRKCSFANYRAQNDGQRHALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLMAKGRSVIIVTVSDVMSVLHESYDNGKSGEKFLQELCGVDLLVLDEIGMQRDTKNEQVVLNQIVDRRTASLRGVGMLTNINHAAMNTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRGVK
1545902..1546324                   PHAGE_Shigel_Stx_NC_029120: LygF; BS654_08525; phage(gi985761265)                    1.15e-65            Shigellaflexneri4cMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDREIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
1546382..1546738                   PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; BS654_08530; phage(gi100050)     6.35e-12            Shigellaflexneri4cMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
1546831..1547049                   PHAGE_Escher_PA28_NC_041935: hypothetical protein; BS654_08535; phage(gi100012)      1.12e-39            Shigellaflexneri4cMVTLFRKKYPRKSRTTEFLFLILFIVLMTPISPQIFVWIIGKIIEPVIELYNDVVWASFNTLHNKINPYKES
1547051..1547416                   PHAGE_Entero_HK225_NC_019717: HNH endonuclease; BS654_08540; phage(gi428782431)      3.02e-42            Shigellaflexneri4cMALTKKQRAELRMKFGGRCAYCGCELGEKWHADHVKPVIRFDGNMLHERDDISNMVPECHPCNLHKHCSSLEDYRRIISDGRREFLASGKGKALVRMGLVEMKSDPVVFWFEIYQEGATA
1547413..1548078                   PHAGE_Escher_Av_05_NC_025830: hypothetical protein; BS654_08545; phage(gi730985112)     1.59e-44            Shigellaflexneri4cMTTITKERLQWLANISGRDDIDDIDGGEIRELALIALASLEAEPVAECIVEDGGMCIDGFGEYVGHSLPDGMHELYAAPRMRQPDGWKAVAVAWKVTFTQVDQESNTFTAIYFYKAEVERWVRLHKACDFRADITPLYAAPAVPVAVNDDMAYAFHHALSDSSLGSDEIEEIKTGLRAAFANVTIQPEPIVPDEIGPNDSNTFDYVDGWNACRAAMLKGDK
1548168..1548443                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; BS654_08550; phage(gi116222036)     8.82e-19            Shigellaflexneri4cMVEIVEMAMRKAGNSPVTLAGWISCSDAVPAEYCDVILLDDLGNVFPGSWDKVFCPTRGGNKMAFVDKDGVEVESSTHWMPLPEPPQEVNQ
complement(1548722..1548796)       PHAGE_Entero_Min27_NC_010237: hypothetical protein; BS654_08555; phage(gi170783688)     7.17e-07            Shigellaflexneri4cMLTGAFLCLPYSGMPEADSLKHPQQ
1548816..1548828                   attL                                                                                 N/A                 TTAACATTAATCT
1548841..1549053                   PHAGE_Entero_933W_NC_000924: protein MokW; BS654_08560; phage(gi9632542)             2.22e-38            Shigellaflexneri4cMSHKCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
1549404..1549541                   bacteriocin; BS654_08565                                                             N/A                 Shigellaflexneri4cMDYFPETPKSIMYRNGRKAIFLPMRVSDIMGNDKLLDELRVRASC
complement(1549559..1550256)       PHAGE_Entero_P1_NC_005856: InsA; BS654_08570; phage(gi46401643)                      8.70e-57            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
1550176..1550487                   transposase; BS654_08575                                                             N/A                 Shigellaflexneri4cMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPVSIGINSGILHNGLNTHSTAPAENYDGAYTTGQTNLFRITSPGDAGELRFFASNQNR
1550390..1550989                   PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; BS654_08580; phage(gi169257286)     3.56e-69            Shigellaflexneri4cMAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSDAAEQYLNTVATCRTRDTALLKSFDAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDETEFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
1550989..1551279                   PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; BS654_08585; phage(gi327198620)     1.20e-41            Shigellaflexneri4cMVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL
1551276..1551830                   hypothetical protein; BS654_08590                                                    N/A                 Shigellaflexneri4cMIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAVNEALRRMKKAGIEKPELEAFLREMINGKQKTWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKRKMAELLNDAHPEWCFRTCCSRVDVWLNLAEYMLYLPMRDAFSSGDLKTVC
1551971..1552156                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; BS654_08595; phage(gi100057)     3.31e-07            Shigellaflexneri4cMAGCVGEPKGSPVSVPGYANPAQFATSSIGVVGGDNFQMYGVIVMTTQISVETLSPITHNQ
1552218..1553357                   PROPHAGE_Escher_CFT073: transposase insF; BS654_08600; phage(gi26249410)             0.0                 Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILNCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSCKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1553263..1553910                   PHAGE_Entero_VT2_Sakai_NC_000902: similar to antirepressor of bacteriophage P22; BS654_08605; phage(gi9633431)     3.73e-62            Shigellaflexneri4cMRFSTIVSVVTLVWGISPRQPSGKNIIRWLLKKRTNGSVRYCQYTSQIPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGKHFFKVVGNDLKELRVALNYSQNPVSPKARSLILWTERGAARHGKMLETDQAWDVFEKLEDCYFSQRDPSTPVSCQKSYDTRVLCYQRGGVTVSTIQLRDDDIVISLESWLELARANGWFVVRRDKLVERLMQL
complement(1553830..1554018)       hypothetical protein; BS654_08610                                                    N/A                 Shigellaflexneri4cIKRVLSSVHVCYSPRDTALRSLPLKQFMCKNARTFLKLHQPFHQFISANNKPTIGSRQFQP
1554119..1554195                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
1554197..1554273                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
1554276..1554351                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
1554355..1554429                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
1554544..1556148                   PROPHAGE_Escher_Sakai: putative integrase; BS654_08635; phage(gi15834496)            8.97e-22            Shigellaflexneri4cMIQLSSSHKLPAVYYLYQRNGVYYFRLRVRQSNNDRMTSISLRTKDRRTAMAYSRHIKAALKAIHADRPNATYEEMREHLKDIAECELSMGRSDLFEPDMRDIYRDQYGELGESLTDALASEPLSIDQHRYINEALKVLKACMRRIEAGDSQPLIDYVDLFNDIDRQDNQADSVSLSVNAPEVKPEVTPSITIASLFEQYEAENYQNWKPATLRENKASHAALIEIFDHLGLNADANRADMLRVRDVLQQLPRNRKQRFKDVPLADLLSREDKTDCLDVVTINNKYLIKMAAVFRWAVRNDLIKKNMTEGLELKVPQRKASGARNAFSTEQVGQLLVAAKAYSQKTSGKPYHYYVTALAAITGARLNEIAQLQVKDVRTTEAGTVYIHINEDDSSLPGKSIKNAHSDRCVPLVDGAYGFILADFMALVETRRGADGDDAMVFDGLRLMKNGYGEQVSKWFNRTLLPKVLVDRSGLAFHSFRHTVAAQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVDRLVNVMADVYKET
1556891..1556989                   pyrimidine monooxygenase; BS654_08640                                                N/A                 Shigellaflexneri4cLLLKWHTEFGHLNRGDMLTSEQHRCSNEKKKF
1556970..1557658                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BS654_08645; phage(gi24373865)       3.19e-09            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPNQIRCGAVMPAT
complement(1557591..1558022)       hypothetical protein; BS654_08650                                                    N/A                 Shigellaflexneri4cMSKHLRPAVLTYHCQFLLHGLSDHVGRGDVFNPQRRINGFMFFSLSVLNLEDHLGLVISPQSPLSAGYITLRACRRSLPLRFSTVTPGGIVGFLIVSYRFNIPDRLAVHLSIHARPELRAHYRSHHRTTPDLVRSRRTAFQGS
complement(1557937..1558362)       hypothetical protein; BS654_08655                                                    N/A                 Shigellaflexneri4cMAAHVASLRCISLIIKGLHLVRSVNSRRKHIQTASLRHVMGFPHRGLLRKLRQPARHRSHAPLTSVADLPRFTCLDSGILRRLPVALFILACRKLAEVSNASVIDAAAPVFRIHVKTPSTGSAYVSLPVPPARPVRSRRPW
1558316..1559839                   PHAGE_Pseudo_phi3_NC_030940: protector from prophage-induced early lysis; BS654_08660; phage(gi100001)     2.61e-48            Shigellaflexneri4cMIISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECRGVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASLTALLSGNYSESKVDMAEQLNRKLKGWAMFYQFVDFKAKVFSYIDRVVFWKLAHWLARKYRTGIASLMRWWCKSPKPGQSKTWVLFGKTNHGKLSGEILYRLVGQGKKLFRWRLPEGNPYLRTETRNTYTSRFTEVAMAFASI
1559920..1560408                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; BS654_08665; phage(gi41057343)     1.08e-116           Shigellaflexneri4cLTLLWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
1560786..1560968                   PHAGE_Escher_C119_NC_042046: hypothetical protein; BS654_08670; phage(gi100023)      1.76e-09            Shigellaflexneri4cMSQQPQQPQQEISIINLDQLVSMTSVEIAELTGKEHRNVLRDIRKMLEELNAGNAANLLI
1560997..1561694                   PHAGE_Entero_P1_NC_005856: InsA; BS654_08675; phage(gi46401643)                      7.01e-57            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
1561704..1562615                   PROPHAGE_Escher_CFT073: transposase insF; BS654_08680; phage(gi26249410)             0.0                 Shigellaflexneri4cITKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
1562643..1563011                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; BS654_08685; phage(gi849255282)     5.52e-24            Shigellaflexneri4cMPVHLSNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGT
1563035..1563187                   PHAGE_Escher_pro147_NC_028896: tail fibers protein; BS654_08690; phage(gi971753728)     1.13e-19            Shigellaflexneri4cMLHLKNITTGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFARTQLK
1563208..1563579                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; BS654_08695; phage(gi18249919)     4.34e-69            Shigellaflexneri4cMVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
1563603..1564871                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; BS654_08700; phage(gi18249920)     7.68e-109           Shigellaflexneri4cMSVVISGALTDGAGIPMSGYHIILKSRVNPPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTDWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
1564822..1565446                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; BS654_08705; phage(gi18249921)     2.91e-05            Shigellaflexneri4cMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRSDGSANLAGTAKRQMGDSPIHCDTRNAGSGQRGQTSGNSMARRTGGEAVHVMERSYLECWSRLTGPPVPGSHAGKICHSTNTYGVERCRSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSAGAEGRAESEGFEFGEFYRGIA
1565458..1565471                   attL                                                                                 N/A                 GCACGTCGTATGCA
complement(1565647..1566504)       iron ABC transporter permease; BS654_08710                                           N/A                 Shigellaflexneri4cMMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFSFDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNAHTQDLLSPN
complement(1566501..1567358)       hypothetical protein; BS654_08715                                                    N/A                 Shigellaflexneri4cMNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFFDENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRRAHKALEDRS
complement(1567355..1568182)       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; BS654_08720; phage(gi371496158)      9.85e-14            Shigellaflexneri4cMMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGSGKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQGDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR
complement(1568182..1569096)       metal ABC transporter substrate-binding protein; BS654_08725                         N/A                 Shigellaflexneri4cMHSIKKVTMLLGCLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNGVPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKAKITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYIDLLKVTTSTLVQGIKAGKREK
complement(1569528..1570181)       PHAGE_Escher_phi191_NC_028660: integrase; BS654_08730; phage(gi966198071)            2.45e-75            Shigellaflexneri4cMAALPDPLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVALLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS
1570223..1570920                   PHAGE_Entero_P1_NC_005856: InsA; BS654_08735; phage(gi46401643)                      7.01e-57            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
complement(1570937..1571107)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; BS654_08740; phage(gi169257268)     4.99e-07            Shigellaflexneri4cMSKLPTGVEIRGKYIRIWFMFRGKRCRETLKGWEITNSNIKKAGNLRALIVHQISSG
complement(1571109..1571276)       DNA-binding protein; BS654_08745                                                     N/A                 Shigellaflexneri4cMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYNYPKINQFIKDS
complement(1571324..1572533)       PHAGE_Stx2_c_1717_NC_011357: putative transposase; BS654_08750; phage(gi209447180)     3.66e-58            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEFDRLWKKCHCWISCVSSTGSDRYAVNCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRMHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
complement(1572608..1573705)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; BS654_08755; phage(gi401817570)     0.0                 Shigellaflexneri4cMALFQRAINTQAYLKAGIMGFAGDGKTYTASELAIGLVMLMRQRGIEAGNRPVMFLDTETGSDWVKPRFDAENIELFTAKTRSFVDLLEAINEAESSGSVMIIDSISHFWTGLCDEYARRRNRKRGLEFSDWAWLKQEWRRFTDRFVNSQAHIIMCGRAGYEYDFFEGDDGKRQLAKTGIKMKAETETGYEPSIRIQMEKQMNIETGQVWRTARILKDRSTRIDGQVFSNPTFKNFLPHIESLNLGGEHPGIDTSRDNSELFANDGTPTWLKEKRAKEIALDEIIELLNKHHGGTSNDAKRAKADLLEKTFTSRSWERIKGMDWPTIKAGRNALWIELEGVEYAFPDPQTQNETQQAGYDENIPV
complement(1573711..1574031)       PHAGE_Entero_Min27_NC_010237: host-nuclease inhibitor protein Gam; BS654_08760; phage(gi170783625)     2.18e-53            Shigellaflexneri4cMSVKLRLPQSAYPIFDRIEEMAWARHYQQIVREEKETELADDLEKGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMAETIAHHQVDIDLED
1574070..1575226                   PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_08765; phage(gi21231087)            2.41e-08            Shigellaflexneri4cMSRKTQRYSKFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNRRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDLHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRVKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
complement(1575274..1576698)       PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; BS654_08770; phage(gi169257272)     3.11e-43            Shigellaflexneri4cMNTDKQVYPLYYEAKNDKVRKRLGIKGGFYWAEAKKLSIAISRGAVAIDDAGYDEDDFKKPVRVNLPVVDDLPPEGVFDTEFCNRYEKGGEDGITMVFIASSPSVQDKPASTDNTNVNGEDMTEIEENMLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARDEELPAVTALAVSHKTSLLDPLEIRDLHKLVRDTDRVFPNPGNSSLGLMTAFFEAYMDADYTDRGLLTKEWMKGNRVSRITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDVDIYNLHPAHAKRVEEIIAENKPPFSVFRDKFITMPGGMDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKTQPSGAMADEQATAETMEPDATEHHQNTQPLDAQSQVNSVDEKYQELRAELHEARKNIPPKNPVDADKLLAALR
complement(1576798..1577073)       hypothetical protein; BS654_08775                                                    N/A                 Shigellaflexneri4cMITSYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLNDGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
complement(1577148..1577324)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; BS654_08780; phage(gi169257274)     1.01e-06            Shigellaflexneri4cMVMTKKIKCAYHLCNKEIEESKIITRPLHFMRGVIPTTEMKKYCSEICAEKDQMAHEL
complement(1577318..1577539)       PHAGE_Shigel_Stx_NC_029120: Kil protein; BS654_08785; phage(gi985761255)             2.10e-46            Shigellaflexneri4cMIAHHFGTDEIPRQCVTPGDYILHEGRTYIASANNIKKRKLYIRSLTTKTCISDCMIKVFLGRDGLPVKAESW
complement(1577616..1578889)       PROPHAGE_Escher_CFT073: transposase insC; BS654_08790; phage(gi26249447)             6.58e-63            Shigellaflexneri4cVIVLIPVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLIIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERDCVSRSRWTAVIVRHCTGRLPAASTVKQYRTSCWERWNAASATIFRRLQWSGRIMVHATGLMKHASSPGCWDLNRRTRRCVVRRVTEQRASKRSVTTSVSCPNQTGRQQRTLQRRSSIITNGIRIVRWVIARHGNICGSGLVMGVITDVWKYAG
complement(1578886..1579774)       PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; BS654_08795; phage(gi428782357)     7.42e-71            Shigellaflexneri4cMLNVAIENQNGWNYSASAPHKTGAGRGNPNVTRAHSRAEAVFLCVMHSSIQIMVGCAGQSQDWPGSRVTGISTPVRLTTLMVVENLGGELINLSLEDAIMATIPALSHPDVTIENGRAVTTSVAVAEFFHKRHDNVLRAIANTECSPEFNALNFEDVTYTDTKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIADVRPHGGRTAPEYPVRQDDSGRSHSGCALRRTRQYQIHRNCSRCTGLYPGYFPVLSGKTGVGSCKPERNKYDRRAAARLAPISRQPVSLIVA
1580041..1580130                   hypothetical protein; BS654_08800                                                    N/A                 Shigellaflexneri4cLSLKRMVNLTTRCPQRGRNNSAILTAASFR
complement(1580345..1580641)       hypothetical protein; BS654_08805                                                    N/A                 Shigellaflexneri4cMSFRIFIAFLDRERLQYRYCSLRKTFWTKIHGNLARASIALSGIHNRSSNQLARFAVFTLELKLFYLREFCFERSLIAFRDCQLINEMTNIQAECLTT
complement(1580900..1580992)       general secretion pathway protein GspL; BS654_08810                                  N/A                 Shigellaflexneri4cMSINIDGRDCCQTGQFSQDVADGALTVVLR
1580998..1581609                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; BS654_08815; phage(gi157166064)     3.64e-08            Shigellaflexneri4cMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDIRDFSAQYSHRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCSCLWRNARAFYSHIVRNAPWKLKKSLIPVIPKVAQ
1581498..1582121                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; BS654_08820; phage(gi730985066)     1.44e-41            Shigellaflexneri4cMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKPLTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
1582121..1582300                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; BS654_08825; phage(gi849255281)     7.57e-08            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRPPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1582301..1584007)       E3 ubiquitin--protein ligase; BS654_08830                                            N/A                 Shigellaflexneri4cMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSTSAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
1584301..1584314                   attR                                                                                 N/A                 GCACGTCGTATGCA
1584558..1585255                   PHAGE_Entero_P1_NC_005856: InsA; BS654_08835; phage(gi46401643)                      6.64e-57            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(1585190..1585327)       pilus assembly protein; BS654_08840                                                  N/A                 Shigellaflexneri4cMYVHLLIPDTYHCILIHSTGNDSNLLIVFYVQIMPDDLVMQLHRF
1585535..1585984                   PHAGE_Entero_P1_NC_005856: Ppp; BS654_08845; phage(gi46401710)                       1.02e-43            Shigellaflexneri4cMKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQSLRCLQLLEQHWVRAVRGNHEQMAMDALAFQQMSLWLMNGGDWFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDV
1586046..1587202                   PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_08850; phage(gi21231087)            1.72e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
1587186..1587434                   PHAGE_Salmon_SP_058_NC_021772: NinI protein; BS654_08855; phage(gi526003485)         1.24e-14            Shigellaflexneri4cMRWLLKKRTNGSVRYCQYTSVYEWQKDVDLHQVLWSRSRLGERPKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGG
1593523..1593535                   attR                                                                                 N/A                 TTAACATTAATCT

#### region 9 ####
1728961..1729658                   PHAGE_Entero_P1_NC_005856: InsA; BS654_09680; phage(gi46401643)                      6.64e-57            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
1729625..1730554                   PROPHAGE_Escher_CFT073: transposase insF; BS654_09685; phage(gi26249410)             0.0                 Shigellaflexneri4cRALSEHKTLSVSWSHYPGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1730579..1730758)       PHAGE_Entero_933W_NC_000924: protein S; BS654_09690; phage(gi9632510)                1.14e-31            Shigellaflexneri4cMDQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGSLLFGLLTYLTEVYWQ
complement(1730908..1731069)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; BS654_09695; phage(gi116221995)     5.74e-20            Shigellaflexneri4cMILRHRTGPAFQAIKDSLAVGLNALTLTDITKNATYGVEIESLVLEINAPASS
complement(1731066..1731254)       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; BS654_09700; phage(gi209427766)     9.29e-34            Shigellaflexneri4cMAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAITPYTLMQAIAAEGDVVVSGATEPE
1731514..1731849                   PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; BS654_09705; phage(gi209447168)     2.66e-54            Shigellaflexneri4cMKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFTLTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQICPYGLKQQSP
complement(1732130..1732216)       DUF3927 domain-containing protein; BS654_09710                                       N/A                 Shigellaflexneri4cMSVPADGVLVAGVVVVAFPLLKKKTPDC
complement(1732297..1732623)       hypothetical protein; BS654_09715                                                    N/A                 Shigellaflexneri4cMVFSALSIYHSYGVGRVNIDEASGCFILRQRIDIVNAARAKAFSRLTVLFCTPDRLSGRDVIILNSDAIQRVCDEFMVANSELFALVQEYNRIARTCGMDELRITHLG
complement(1732761..1732837)       tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAGCGCGCCA
complement(1732939..1733014)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(1733159..1733980)       PHAGE_Entero_HK225_NC_019717: late gene regulator Q; BS654_09730; phage(gi428782441)     1.86e-111           Shigellaflexneri4cMKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCCYGEKFIESIVFTNKIQYPDGKPPVWAKCTKGVYPFYWEEWKKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGYERLPSTEAFNAICEVTNQITRASWEKTVKKFYDALVTRFDIEEAWAERQLKKVTR
complement(1733995..1734351)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; BS654_09735; phage(gi985761276)     2.96e-46            Shigellaflexneri4cMLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQRLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQPVSGGRLGVKIYPIMH
complement(1734364..1735413)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; BS654_09740; phage(gi428782365)     2.41e-135           Shigellaflexneri4cMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPQQEKTVVSIAVDPESPESFMKRPKRRRWVNEKYKRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLIFRFLDHAFATGVLG
complement(1735415..1735693)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; BS654_09745; phage(gi401817580)     3.94e-14            Shigellaflexneri4cMARNAKYYNHDNSTVLAHTHERYSHAFKSDWYQHPSCTEEQAEWLIQCYRRRGCEVKKALSLDYRHIISVRLPYSEQPPRPSRTFQQRIWR
complement(1735760..1736011)       hypothetical protein; BS654_09750                                                    N/A                 Shigellaflexneri4cMMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALINFVDARVTDGFILRDGEFVTSLQALKEIGIKAGFSAFSEE
complement(1736229..1736384)       PHAGE_Entero_933W_NC_000924: host killer protein; BS654_09755; phage(gi9632541)      1.17e-25            Shigellaflexneri4cMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(1736456..1736743)       mRNA interferase RelE; BS654_09760                                                   N/A                 Shigellaflexneri4cMAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
complement(1736743..1736982)       antitoxin RelB; BS654_09765                                                          N/A                 Shigellaflexneri4cMGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
1737007..1737312                   hypothetical protein; BS654_09770                                                    N/A                 Shigellaflexneri4cMSLQVSHYNMLRASHEGSQKVVVRTVITVRFVPGAAIAKSILYCAGQLFFKESGHHLTGTDTIYFVTVRLHMHNSTYSSIFCFSMSVRCTGNSGHYHLFFF
complement(1737309..1738465)       PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_09775; phage(gi21231087)            7.88e-09            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRLLAA
1738527..1739546                   PHAGE_Burkho_phi1026b_NC_005284: gp59; BS654_09780; phage(gi38707949)                2.89e-12            Shigellaflexneri4cSPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
1739635..1741095                   oxidoreductase; BS654_09785                                                          N/A                 Shigellaflexneri4cMGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQMDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLEHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRHAAYGMMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK
complement(1741131..1741334)       PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; BS654_09790; phage(gi410491512)     4.86e-18            Shigellaflexneri4cMTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLDLIRLGMN
complement(1741512..1742198)       transcriptional regulator; BS654_09795                                               N/A                 Shigellaflexneri4cMTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSDWFSEE
complement(1742287..1743033)       PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; BS654_09800; phage(gi971760361)     2.64e-10            Shigellaflexneri4cMIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELTDELGDNLYIAQLDVRNRAAIEEMLASLPAEWSNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ

#### region 10 ####
complement(2072737..2073189)       PHAGE_Proteu_vB_PmiM_Pm5461_NC_028762: nudix hydrolase; BS654_11610; phage(gi971741020)     4.20e-07            Shigellaflexneri4cMKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA
complement(2073307..2075079)       aspartate--tRNA ligase; BS654_11615                                                  N/A                 Shigellaflexneri4cMRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMIFFGADNKKIVADGMGALLLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN
2075389..2075643                   nicotinamidase; BS654_11620                                                          N/A                 Shigellaflexneri4cMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPVTLFVPLIMGC
2075835..2077031                   PROPHAGE_Escher_CFT073: transposase; BS654_11625; phage(gi26248352)                  0.0                 Shigellaflexneri4cMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTFYTPQGS
2077058..2077405                   hydrolase; BS654_11630                                                               N/A                 Shigellaflexneri4cSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILHAL
complement(2077487..2077603)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; BS654_11635; phage(gi18249922)     5.17e-06            Shigellaflexneri4cMNFADFHMTWQSNALIILKKTHALGRSLVIFKNPVSRS
2077760..2078008                   PHAGE_Entero_cdtI_NC_009514: hypothetical protein; BS654_11640; phage(gi148609412)     1.47e-52            Shigellaflexneri4cMRFEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(2078005..2078139)       capsid protein; BS654_11645                                                          N/A                 Shigellaflexneri4cMIGGGGRSDRRHVVCKNVLRLAGELPIVRVLNDFQPLLILRAN
2078138..2078344                   hypothetical protein; BS654_11650                                                    N/A                 Shigellaflexneri4cMIGQYQYSTSKDRKLAVSAKHRPDGEKTKRYAKMPRFQKNKKPLMDSLLNTVFYIHDSLIPVALIAII
2078609..2080360                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; BS654_11655; phage(gi169257209)     6.92e-09            Shigellaflexneri4cMLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEEQRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLTQLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPELLETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLPENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2080361..2080540)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; BS654_11660; phage(gi849255281)     3.08e-06            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2080540..2081164)       hypothetical protein; BS654_11665                                                    N/A                 Shigellaflexneri4cMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSSLHSHRCCTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMAHRTGGEAVHVMERPHVERRLVSGPPVPGGHAGKICRGTNTYGVECGSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSAGDERGAEQSGFGFNSGVRVA
complement(2081115..2082526)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; BS654_11670; phage(gi18249920)     6.94e-68            Shigellaflexneri4cMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTGKIPQKILFTESWRALSATDGETLTLAGLLLRTREKLTVIKSSDLSGGSHTEAHDWDRWGFQCPVLPPERIHPHNFSLRDVQSIHYQGHIAPCPGCRMLMSLAQCPGFLFAHRGA
complement(2082590..2083189)       PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; BS654_11675; phage(gi148609401)     4.21e-132           Shigellaflexneri4cMRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
complement(2083257..2086736)       PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; BS654_11680; phage(gi148609400)     0.0                 Shigellaflexneri4cMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKSTAGISIS
complement(2086797..2087438)       PHAGE_Entero_cdtI_NC_009514: putative tail component; BS654_11685; phage(gi148609399)     9.62e-130           Shigellaflexneri4cMAATHTLPLASPGMARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
complement(2087336..2088079)       PHAGE_Entero_cdtI_NC_009514: putative tail protein; BS654_11690; phage(gi148609398)     5.11e-167           Shigellaflexneri4cMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
complement(2088084..2088782)       PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; BS654_11695; phage(gi148609397)     2.42e-155           Shigellaflexneri4cMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
complement(2088782..2089111)       PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; BS654_11700; phage(gi148609396)     1.49e-73            Shigellaflexneri4cMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTADFEQVVN
complement(2089111..2092153)       PHAGE_Entero_cdtI_NC_009514: putative tail protein; BS654_11705; phage(gi148609395)     0.0                 Shigellaflexneri4cMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVSSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVGQLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDTINQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETGKRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYPWTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNETEAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYSQQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKNELIQALTLLDVKQQELQKQTALNDLRKKNGSADQPAGRQRTCTAAAQSGYCHCRYGGAAAALPGTVAHPAGIPATVATAEQSPERHLRDGGLPEGGGAEGEPEATTEKQTLLAGTGSGAGRLEKRCHAGVSEFYGGCGCGGNGRTDVYSGIQQCRCTGDILYHRAEFILHLFPVVRYGQNYGTDGHDAGGKGRRFFIRLHDCWRCLPVCFESLQWHGGPSDVFCFCKRRGCDGGSGTSHSATASRCWAGGCGGYWWFRHGDVCPAVQHDQRRHERADRSGCPEGGLPREKSGRGLYATAGPWWPVKWSIPVA
complement(2092125..2092454)       PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; BS654_11710; phage(gi148609394)     2.23e-74            Shigellaflexneri4cMQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
complement(2092463..2092849)       PHAGE_Entero_cdtI_NC_009514: putative tail component; BS654_11715; phage(gi148609393)     3.02e-84            Shigellaflexneri4cMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
complement(2092908..2093648)       PHAGE_Entero_cdtI_NC_009514: putative major tail subunit; BS654_11720; phage(gi148609392)     2.72e-170           Shigellaflexneri4cMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAP
complement(2093659..2094060)       PHAGE_Entero_cdtI_NC_009514: putative tail component; BS654_11725; phage(gi148609391)     9.34e-93            Shigellaflexneri4cMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFIRAQAPDSELDMWMESTIFPALNDVPALSGLIDTLNPLGFNYQRDNEMATWAMAEITYQITYTN
complement(2094057..2094647)       PHAGE_Entero_cdtI_NC_009514: putative tail component; BS654_11730; phage(gi148609390)     1.02e-103           Shigellaflexneri4cMKGLENAIRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNPPAIKLNTTRRRAGEGLRVGKYFFRGAFVQQLANGRWHVLRCLPEARFATGHDHQGRLRKNRLPVEVVKIPLSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
complement(2094634..2095005)       PHAGE_Entero_lambda_NC_001416: head-tail joining protein; BS654_11735; phage(gi9626253)     1.28e-35            Shigellaflexneri4cMADFDNLFDVALDLADKAIIRNMGIRAVITSGRLKGIMISGVFDDPENISLVAGGVRIEDSLPSLFVKTADILRLCRNDSLMIGRESFCVDRITPDDGGCSYIRLRREGLPGNVRAGRYYEGA
complement(2095017..2095418)       PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; BS654_11740; phage(gi100042)     1.78e-48            Shigellaflexneri4cMAKKDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELANMDDTDIRDKSAHPENALTGHENEVISAQPETVIQNMDDLVTVVALVTLHTDALHATRDEPLAFVPPGMAFRVFAGVAAGMTERGLARMQ
2095682..2096878                   PROPHAGE_Escher_CFT073: transposase; BS654_11745; phage(gi26248352)                  0.0                 Shigellaflexneri4cMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTFYTPQGS
complement(2097104..2097400)       hypothetical protein; BS654_11750                                                    N/A                 Shigellaflexneri4cMIHHSGVVNISSDNLQNILSKPREHTLNCLGWRFFVQRSVCVSWKSDFAWTGIMLLFRGEELAFSSAFSPVTIRKIMKCPPPGRRTVEKRTRQQKHWG
complement(2097578..2097652)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(2097656..2097731)       tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
complement(2097734..2097810)       tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTCCGAGGTTCGAGTCCTCGGTGGTGGGCCA
complement(2097812..2097887)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
complement(2098064..2098753)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; BS654_11775; phage(gi169257244)     1.55e-97            Shigellaflexneri4cMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGASIPLVSQVAFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQITITHWAWEEFKAHSGTRKIAEKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTGHWVVMKHIFHRLDSEALLFVMRTRSEQKAAFSKQSIAKVD
complement(2098750..2099109)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; BS654_11780; phage(gi985761276)     2.25e-52            Shigellaflexneri4cMRHEFILPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLSLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDETNIVRGLPVPGGRLGIKITELECA
complement(2099109..2099297)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; BS654_11785; phage(gi18249884)     8.29e-25            Shigellaflexneri4cMPFYFRKECPLNSGYLNMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEVLR
2099313..2100469                   PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_11790; phage(gi21231087)            2.58e-08            Shigellaflexneri4cMSRKTQRYSKFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRVKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
complement(2100493..2100675)       hypothetical protein; BS654_11795                                                    N/A                 Shigellaflexneri4cMSYFLNHFSVYCFLAMSLRSRLIVRWCARVYSVVDSPRFHISFPLKIKRLSGWRCEVYWQ
2100782..2100970                   PHAGE_Cronob_vB_CsaM_GAP31_NC_019400: hypothetical protein; BS654_11800; phage(gi414086809)     9.81e-05            Shigellaflexneri4cMNIYFRIVISLAIIACIYGLIVPALISMKDTVAVISGFALACLTPPCIYAIYKGLSFSKDKR
2100967..2101794                   PHAGE_Entero_phiP27_NC_003356: putative serine protease; BS654_11805; phage(gi18249869)     0.0                 Shigellaflexneri4cMKKVIPALALVLLTTGLVGCDRVEPGNVGIKVNKLGDDKGVGEVVGVGRYWTGWNTEVYIFPTFKQMKTYDEPFSFQMSDGTTIGYHIGVAYKVDPSKVTTVFQTYRKGVDDITDTDLRQKIADALNRLASKMTTDKFIDGGKSELLDAALKDIQEEMTPIGIQVMSLSYVGKPEYPPTVIDSINAKVTANQKTLQCEQEVKQREAEANMLRAEAAGQADAIRTKAQAEADAIRLRGEALRQNPNVMELEAINKWNGTLPQYMTSGANTPFIQVK
2101838..2102587                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; BS654_11810; phage(gi18249878)     9.74e-70            Shigellaflexneri4cMNTVTINNKQFPVIEYRGQRVVTLAMIDEVHQRPEGTARAAFNRNREHFISGVDYAELGADVIRTDLPEGTFSKFAPSGIVLFESGYLMLTKPFNDALAWQVQRELVNSYFRTRTPLTEIEMIAAIAADAVRQQKRLNHVEEQLETVTEAVETIKRGNMRAGYVGYRQVVAKSGMSDTKCRNLVNAYQIPTDTHEFMTPDGLLSRRAIVELEPFMAAFHQMMSEADPRGTRWYHPKMGLFQVIGWEDKA
2102584..2103153                   PHAGE_Shewan_1/41_NC_025458: DNA polymerase III beta subunit; BS654_11815; phage(gi712915574)     4.63e-34            Shigellaflexneri4cMIIQSKLIRAALVCAAKNDVRYYLNGLHITPKHIEATNGSVALRMAHGIRTKKNIIVQFEGGVPAKAETTELIFSKEPIAVHRDQFQRRLSITGIKLVDGCFPDLDRIIPKKFDRCTHPVLQAGYLSYPEKMFGRERKFIPVQLRPSGDGQAVRIQFDSIINSMYGNPEFVVMPCRDHGDFNVAQEHPE
2103277..2103519                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; BS654_11820; phage(gi157165989)     9.82e-44            Shigellaflexneri4cMFALIQRGQIYTDRAGYPVEITRSTEHSVFFRRMDGRTGRVRIGEFSSLFEHIDHLEYHKILAETEQEKHLKKLRAMQRK
2103523..2103669                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; BS654_11825; phage(gi157165988)     2.46e-25            Shigellaflexneri4cMNKAFELWVHQRYGNHYDLTRDVDGFYCREIVKRMFEVWCHCRGLSVV
2103678..2103875                   PHAGE_Entero_phiP27_NC_003356: putative excisionase; BS654_11830; phage(gi18249866)     1.12e-33            Shigellaflexneri4cMGNVIQLAPNEWVCESVLIAITGLKPGTILRTRKECWMVGREYIHVSPDGNPKPSEVVNKNWPPS
complement(2103850..2105018)       PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BS654_11835; phage(gi24373865)       5.86e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPSQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITAHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
2105248..2105598                   hypothetical protein; BS654_11840                                                    N/A                 Shigellaflexneri4cMLILDSRPVHASRPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF
2105651..2106046                   hypothetical protein; BS654_11845                                                    N/A                 Shigellaflexneri4cMVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAICIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWELVFSLR
2106087..2106830                   PHAGE_Staphy_SPbeta_like_NC_029119: tRNA (cmo5U34)-methyltransferase; BS654_11850; phage(gi985761180)     1.17e-36            Shigellaflexneri4cMSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAEDAA
2106827..2107798                   tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB; BS654_11855     N/A                 Shigellaflexneri4cMIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSNTVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNIDTEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRIVDVCVTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP
complement(2107963..2110392)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; BS654_11860; phage(gi100132)     1.85e-65            Shigellaflexneri4cMALTRREFIKHSGIAAGALVVTSAAPLPAWAEEKGGKILTAGRWGAMSVEVKDGKIVSSTGALAKTIPNSLQSTAADQVHTTARIQHPMVRKSYLDNPLQPAKGRGEDTYVQVSWEQALKLIHEQHERIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQASWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEFFGDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPKSAVWTAEITGVPEAQIVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYSNGGNPTRVGGVLPEMSAAIAGQASEAADDGGMTAIPVARIVDALENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDEMAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRRSEKNEQYVRYGDFRADPVKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLHSQLNYAELRKKYAVADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIKKGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQRANACAGNSALVYIEKYTGNAPKLTAFDKPAVQA

#### region 11 ####
2192657..2192668                   attL                                                                                 N/A                 ATGCCTGCCAGT
2201473..2201485                   attL                                                                                 N/A                 ATGGCTTATGAAA
complement(2205106..2205375)       PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; BS654_12485; phage(gi428782810)     2.00e-25            Shigellaflexneri4cMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
2205516..2206100                   methyltransferase; BS654_12490                                                       N/A                 Shigellaflexneri4cMGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
2206416..2208059                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; BS654_12495; phage(gi169257209)     3.38e-05            Shigellaflexneri4cMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2208060..2208239)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; BS654_12500; phage(gi849255281)     3.08e-06            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2208239..2208766)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; BS654_12505; phage(gi730985066)     6.37e-34            Shigellaflexneri4cMLKKRTNGSVRYCQYTSVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
complement(2208759..2209628)       PROPHAGE_Escher_CFT073: transposase insF; BS654_12510; phage(gi26249410)             0.0                 Shigellaflexneri4cQHYPLIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDKRLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQLPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLGHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQIAA
2209674..2209949                   PHAGE_Entero_P1_NC_005856: InsA; BS654_12515; phage(gi46401643)                      7.24e-60            Shigellaflexneri4cMASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
2209868..2210092                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; BS654_12520; phage(gi557307573)      8.90e-43            Shigellaflexneri4cMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVF
complement(2210464..2210946)       hypothetical protein; BS654_12525                                                    N/A                 Shigellaflexneri4cMIKPFLMTVAILTSCCAQAKILTNEEIVSRFISNVKTSADNDVDLDTDGFRQLRISCPSPSASGAIILRKASYEFGKSIGVFDFANNASPATMTFLIPIYKDDDFDSDTVGFTFAFKMPRGQFFVDVKENGNIRAGVNVNGESGVTYENCKLNMKDINDD
complement(2211014..2212963)       PHAGE_Shigel_SfIV_NC_022749: tail tape measure protein; BS654_12530; phage(gi557307539)     0.0                 Shigellaflexneri4cMADSFQLKAIITAVDKVSAPLKGMQRQLKGFKKEFASLSLGAAGAGTAVLGALALPVKSAIALESKMADVRKVVDGLDTPEAFKAMTEQVRDLSTELPMSAEGIAEIVAAGGQAGIARDELMQFTDDAVKMGVAFDTTAEESGQMMAQWRTAFKLTQGEVAGLADKINYLGNTGPASAKKISDVVTRIGPLGSVAGVASGEIAAMGATIAGMGVESEIAATGIKNFMLSLTARDSATKSQKKVLRSLRISPKKLAADMQKDARGAMLHVLDSLAKVPKEKQAAVLKALFGKESLGAIAPLLTNLDLLRTNFNRVADAQQYGGSMQKEYAARAATTENQLLLLQNQINAISSTLGETFLPSLNEGIKEMKPFLEEVRTFVRENPEVVKTIAKTGAALLTMGVAIGTLTRITKIMGSVMNMTPAKGLIALLVGGAYLIIDNWETVGPVVKKVWQEVDQVVRAMGGWEQAVKTIATVSALYIGVKAVASIRAATVAQNQWTTAAGKTGLKLKGLGKISLIGGLLELGMMAQEFEKEHPWLVKNFVADALNSGFGLNDKFDEWGKQFHDFVYDMTGWQMPRGDGYLSPDKRYTPNVSLERNQLLSLASSPATRSELKVTFDNAPPGMRVIDLPKTGDPFMKITHDVGYSPFKR
complement(2213048..2213377)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; BS654_12535; phage(gi557307538)     1.81e-50            Shigellaflexneri4cMNVTEIVLKKPVTAHNEMLHVLELREPTYDEIEALGFPFIISGEGSIKLDSQVALKYIPLLAGIPCSSAAQMAKLDIFKTSMQILRFFTQSETGSTSGNDSTMLPGSGN
complement(2213383..2213739)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; BS654_12540; phage(gi557307537)     8.30e-70            Shigellaflexneri4cMAKIAGTCFFKVDGQQLSLTGGIEVPMNTNVRDDIVGMAGDVDYKETWRSPYVKGTFKVPKNFPVDKITTSDQMTITAELANGMVYVLSAAWLHGEANHNAEEGTADLEFHGEEGGYQ
complement(2213739..2215235)       PHAGE_Shigel_SfIV_NC_022749: tail sheath protein; BS654_12545; phage(gi557307536)     0.0                 Shigellaflexneri4cMTISFNTVPSNTLVPLFYAEMNNSAANTAVTSAPALLIGHASNDAAIEVNSLVLMPSADYARQICGAGSQLARMVEVYRQTDPFGELYVIAVPEARGAAATVRVTVAGEAEESGTLSLYVGRSRVQVPVVNGDDATAVATAIKEAVNGVITLPFTASSDAGVVTLTARHKGLYGNELPVCLNYYGSGGGEILPAGLRVVTEVGAAGSGAPDLTAAVAAMGDEAFDFIGLPFNDAASINMMMTEMNDSSGRWSYARQLYGHVYTAKLGTLSELVGAGDMHNQQHITPAGYEKETQSPVDELVASRLAREAVFIRNDPARPTQTGELVGMLPAPKGKRFIMTEQQTLLSHGVATAYVEGGTLQIQRSVTTYKKNAYGVADNSYLDSETLHTSAYVLRKLKSVITSKYGRHKLANDGTRFGPGQAIVTPAVIKGELLATYRQMERAGIVEKYDLFKQYLIVERDADNPNRLNTLFPPDYVNQLRVFAVVNQFRLQYSEESA
complement(2215232..2215393)       PHAGE_Entero_SfV_NC_003444: hypothetical protein; BS654_12550; phage(gi19549000)     4.40e-21            Shigellaflexneri4cMFVKPLKGRSVPDPARGDLLPSEGRNVEESSYWFRRIAAGDVVRVKQDKAKKS
complement(2215403..2215762)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; BS654_12555; phage(gi557307535)     2.84e-45            Shigellaflexneri4cLLPVHLNERDEKGQWAAYDAVHDVRRELWKALLGWMPDPQGGEIVYVGGTLLDLNRYELYYQFDFTAKYEITEEDTRQAEDVNALPDLSLLSIDVDYIDPGTGPDGDIEHHLEMRFPQN
complement(2215787..2216943)       PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_12560; phage(gi21231087)            1.20e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNRRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
complement(2217009..2217821)       PHAGE_Stx2_c_1717_NC_011357: transposase; BS654_12565; phage(gi209447153)            1.37e-68            Shigellaflexneri4cMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDT
complement(2217841..2218168)       PHAGE_Stx2_c_1717_NC_011357: transposase; BS654_12570; phage(gi209447152)            7.44e-34            Shigellaflexneri4cMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDIA
complement(2218165..2218839)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; BS654_12575; phage(gi209447151)     2.29e-09            Shigellaflexneri4cMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
complement(2218938..2219153)       PHAGE_Entero_VT2phi_272_NC_028656: holin; BS654_12580; phage(gi966197762)            5.66e-35            Shigellaflexneri4cMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGSLVLGFLTYLTNLYFKIREDKRKAARGE
complement(2219446..2219520)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(2219524..2219599)       tRNA                                                                                 N/A                 GCCGACTTGGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
complement(2219602..2219678)       tRNA                                                                                 N/A                 CCGCCACTAGCTCATCAGGAAAGAGCGTCAACCCTTTAAGTTGAGTGTGCGAGGTTCGAGTCCCCGGTGGCGGTCCA
complement(2219680..2219755)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(2219798..2219919)       antiterminator; BS654_12605                                                          N/A                 Shigellaflexneri4cLPILYVMAKANKTRPQAGFLCHLSRIDMVNALVEEIRVIFGA
complement(2219949..2220637)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; BS654_12610; phage(gi169257244)     5.37e-102           Shigellaflexneri4cMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGTSIPLVSPVEFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQIAITQWAWNEFNAQSGTRKIAGKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTRHWVAMKHIFHRLDSEALLFVMRTRSKKRRHFQSKVLQKIGA
complement(2220634..2220999)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; BS654_12615; phage(gi985761276)     2.73e-51            Shigellaflexneri4cMTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLNLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVRGQLVPGGRLGIKITELGCA
complement(2221000..2222058)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; BS654_12620; phage(gi557307571)     4.25e-110           Shigellaflexneri4cMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPPQEETVVSIAVDPESPAQYLQRQKPQREEMPVYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHNELHAGVKDFEEKHGSQLLLLIRFLMHARNSGVLKWKA
complement(2222060..2222338)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; BS654_12625; phage(gi401817580)     3.96e-12            Shigellaflexneri4cMAHDTKFYNSDNSAAPASRHGRRSHAFKSDGYQHDPCTEEQAEWLIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR
2222279..2222531                   hypothetical protein; BS654_12630                                                    N/A                 Shigellaflexneri4cVPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQKKQNPPKRVKCGCVEDAHISGGEGFLPRRVSYSSGSAVA
complement(2222506..2222718)       PHAGE_Entero_933W_NC_000924: protein MokW; BS654_12635; phage(gi9632542)             5.94e-41            Shigellaflexneri4cMLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(2222921..2223100)       hypothetical protein; BS654_12640                                                    N/A                 Shigellaflexneri4cMKNALQFLFVAFWLFASCMPIIFTARYMEKIDVLILMFGHINALFLGVFMAVMCIEYWR
complement(2223313..2223729)       PHAGE_Escher_Av_05_NC_025830: hypothetical protein; BS654_12645; phage(gi730985110)     4.70e-32            Shigellaflexneri4cMTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN
2223774..2223896                   DUF4224 domain-containing protein; BS654_12650                                       N/A                 Shigellaflexneri4cMENGLPFYTNRSGKPIVSRDLFTCNKTLPPREVEPNFGAI
2223896..2224921                   PHAGE_Salmon_118970_sal3_NC_031940: baseplate subunit; BS654_12655; phage(gi100105)     8.31e-130           Shigellaflexneri4cMGRRRKNPEHEKLPPNVYPNKYSYVWKPTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK
complement(2224974..2225063)       tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGGAGTGGGGGCAACTCCACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
2225157..2225954                   protein MtfA; BS654_12665                                                            N/A                 Shigellaflexneri4cMIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVALAERFLQQKRLVPLQGFELNSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFISLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH
2225988..2226000                   attR                                                                                 N/A                 ATGGCTTATGAAA
2226055..2226130                   tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
2226292..2227554                   PROPHAGE_Escher_CFT073: prophage P4 integrase; BS654_12675; phage(gi26248270)        0.0                 Shigellaflexneri4cISLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNMALAHKSNRKWSQNTADRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNKFIP
complement(2227661..2228829)       PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; BS654_12680; phage(gi24373865)       5.58e-10            Shigellaflexneri4cMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPSQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITVHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
2237353..2237364                   attR                                                                                 N/A                 ATGCCTGCCAGT

#### region 12 ####
2350410..2350489                   attL                                                                                 N/A                 GAACGCACTCTGGCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTG
complement(2365041..2365738)       PHAGE_Entero_P1_NC_005856: InsA; BS654_13385; phage(gi46401643)                      8.70e-57            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
2365829..2366290                   hypothetical protein; BS654_13390                                                    N/A                 Shigellaflexneri4cMKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKSTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK
complement(2366331..2366495)       hypothetical protein; BS654_13395                                                    N/A                 Shigellaflexneri4cDILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS
complement(2366511..2367208)       PHAGE_Entero_P1_NC_005856: InsA; BS654_13400; phage(gi46401643)                      4.27e-56            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYIASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2367242..2367577)       hypothetical protein; BS654_13405                                                    N/A                 Shigellaflexneri4cMISNDILRSVRYILKANNNDLVRILALDNVEATAEQIAVWLRKEDEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTDDILVMLPTY
complement(2367624..2368343)       DNA-binding response regulator; BS654_13410                                          N/A                 Shigellaflexneri4cMIKVLIVDDEPLARENLRIFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
complement(2368340..2370025)       PHAGE_Entero_YYZ_2008_NC_011356: putative 2-component sensor protein YehU; BS654_13415; phage(gi209427798)     0.0                 Shigellaflexneri4cMYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA
2370251..2371578                   PROPHAGE_Escher_MG1655: IS4 transposase; BS654_13420; phage(gi16132099)              1.27e-54            Shigellaflexneri4cMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPVPLFRPASAWEVRLSAACSRKQRSSGITPRRIRTGAAPCWPSMVCSGAHRIHQRTMQPSPARHMPGTRRSTRRSKWSARWNPAICRLQPSARRTAKMSLLSNLNKPAITLRWIKVITHWDCMAGAWRENTATGYLSERERNMKSSENWVKAIIWSKPARRHEKSGRDWEMKQPACPRAKEKSAICRRRTPCASPEEKWRICTVIAGKSNWDTGRNRRCNAGREVKSRSLWSKSCGVSYWLIIWDIRLKWRNIKVTGRINVSQNHAEWECHCRALHRDVYRSCAILQVWDNLNYRREGEGPSREWRRGPGNTPQPRKRASQLLAA
2371976..2372224                   PHAGE_Entero_cdtI_NC_009514: hypothetical protein; BS654_13425; phage(gi148609412)     2.94e-53            Shigellaflexneri4cMRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(2372340..2372609)       PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; BS654_13430; phage(gi428782810)     2.00e-25            Shigellaflexneri4cMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
2372750..2373334                   methyltransferase; BS654_13435                                                       N/A                 Shigellaflexneri4cMGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
2373650..2375293                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; BS654_13440; phage(gi169257209)     3.38e-05            Shigellaflexneri4cMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2375294..2375473)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; BS654_13445; phage(gi849255281)     3.08e-06            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2375473..2376097)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; BS654_13450; phage(gi18249921)     1.70e-05            Shigellaflexneri4cMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMAHRTGGEAVHVMERSYLECWPRLTGPPVPGSHAGKICHSTNTYGVERCRSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSANERGAERSGFGFNSGVRVA
complement(2376048..2377316)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; BS654_13455; phage(gi18249920)     1.28e-107           Shigellaflexneri4cMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMAGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPGTPTGTYIVSPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
complement(2377340..2377885)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; BS654_13460; phage(gi18249919)     1.14e-94            Shigellaflexneri4cMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
complement(2377888..2378301)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; BS654_13465; phage(gi849255282)     2.37e-28            Shigellaflexneri4cMAALPKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
2378343..2379040                   PHAGE_Entero_P1_NC_005856: InsA; BS654_13470; phage(gi46401643)                      7.16e-57            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAVRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRPSGIITNTISAA
2378765..2378844                   attR                                                                                 N/A                 GAACGCACTCTGGCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTG
2379052..2379411                   PHAGE_Entero_phiP27_NC_003356: putative integrase; BS654_13475; phage(gi18249865)     5.93e-53            Shigellaflexneri4cYRSTVHKCTFVFSPQVIKQRQFSGPHYKVDSIRESWTSILKRAGLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNRRLSESVPCMPHKKAG
2379432..2379713                   transcriptional regulator; BS654_13480                                               N/A                 Shigellaflexneri4cMGLPLIPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKILLSNENVDVQNVWRDQQETLLTYLQSVNRPGNPGD
2379739..2380948                   PHAGE_Stx2_c_1717_NC_011357: putative transposase; BS654_13485; phage(gi209447180)     8.40e-59            Shigellaflexneri4cMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHRPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQIGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
2380945..2381446                   MerR family transcriptional regulator; BS654_13490                                   N/A                 Shigellaflexneri4cLSSQIKHSPGNPGRFSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLARPLAQSTTPTIRRPYIAGVVRKSNLRPTAATHQLARTRPYFPTRYLA
2381506..2381613                   hypothetical protein; BS654_13495                                                    N/A                 Shigellaflexneri4cMRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG
complement(2381594..2382325)       osmoprotectant uptake system permease; BS654_13500                                   N/A                 Shigellaflexneri4cMKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIALILYGVLPILQVTLAGLGAIDPSVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQHAK
complement(2382330..2383256)       PHAGE_Bacill_G_NC_023719: gp245; BS654_13505; phage(gi593777701)                     1.76e-29            Shigellaflexneri4cMIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSELGVHLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVVNTQGQPCGTLHFQDLLVEA

#### region 13 ####
2822495..2824051                   PHAGE_Bacill_BM5_NC_029069: hypothetical protein; BS654_15695; phage(gi985757795)     2.78e-11            Shigellaflexneri4cMKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN
complement(2824048..2824584)       PHAGE_Achrom_83_24_NC_028834: tRNA-specific adenosine deaminase; BS654_15700; phage(gi971747971)     4.32e-07            Shigellaflexneri4cMRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD
complement(2824609..2825244)       phosphatidylglycerophosphatase C; BS654_15705                                        N/A                 Shigellaflexneri4cMATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE
2825453..2826301                   MurR/RpiR family transcriptional regulator; BS654_15710                              N/A                 Shigellaflexneri4cMNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAALRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV
complement(2826640..2827194)       PHAGE_Escher_pro483_NC_028943: DNA invertase; BS654_15715; phage(gi971758535)        2.86e-113           Shigellaflexneri4cMLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLKTLSAGDTLVVWKLDRLGRSMRHLVVLVEALRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLEAARAQGRIGGRRPKLSPEWAQAGRLIASGVSRQKVAIIYDVGESTLYKRFPARVI
2827699..2829525                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; BS654_15720; phage(gi169257209)     4.11e-05            Shigellaflexneri4cMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2829526..2829705)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; BS654_15725; phage(gi849255281)     3.08e-06            Shigellaflexneri4cMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2829705..2830329)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; BS654_15730; phage(gi18249921)     1.70e-05            Shigellaflexneri4cMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMAHRTGGEAVHVMERSYLECWPRLTGPPVPGSHAGKICHSTNTYGVERCRSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSANERGAERSGFGFNSGVRVA
complement(2830280..2831695)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; BS654_15735; phage(gi18249920)     1.10e-115           Shigellaflexneri4cMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMAGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPGTPTGTYIVSPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
complement(2831719..2832264)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; BS654_15740; phage(gi18249919)     1.14e-94            Shigellaflexneri4cMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
complement(2832267..2832740)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; BS654_15745; phage(gi849255282)     2.14e-28            Shigellaflexneri4cMAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
2832804..2834077                   PROPHAGE_Escher_CFT073: transposase insC; BS654_15750; phage(gi26249447)             1.35e-64            Shigellaflexneri4cVIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERDCVSRSRWTAVIVRYCTGRLPAASTVKQYRTSCWERWNAASATIFRRLQWSGRIMVHATGLMKHASSPGCWDLNRRTRRCGVRRVTEQRASKRSVTTSVSCPNQTGRQQRTLQRRSSIITNGIRIVRWVIARHGNICGSGLVMGVITDVWKYAG
complement(2834002..2834988)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; BS654_15755; phage(gi18249918)     5.03e-82            Shigellaflexneri4cMKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFPPVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAILAGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLSDLQNKGTARDNLQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEGQGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGNSIVLGDNDTGFKQNGDGILDVYANSQRVFRWICPYISRHLLSLNPLQARCRRYSRGER
complement(2834975..2835580)       PHAGE_Aeromo_vB_AsaM_56_NC_019527: hypothetical protein; BS654_15760; phage(gi422937564)     6.46e-40            Shigellaflexneri4cMQNVAATVLAQYAASPRLNALINSFNAALSPDSFISDFYGLIWNIDTAEKYGLDVWGKIVGVSRWLTVKDDFNYLGFSESRMDTPVMDDPCPFNQAPFYNGKSDTRTVDLSDAVYRRLILMKAMSNITDCSVPDINLMLRFMFGKKRRAYVLNNGGLRMSYVFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ
complement(2835582..2836264)       PHAGE_Acinet_phiAC_1_NC_028995: putative baseplate J-like protein; BS654_15765; phage(gi971763836)     1.30e-07            Shigellaflexneri4cVPGSDEETRADFENRRRNSVARNARNILEAIRGEILSTVENVVDVYVTHNPKKTEQKAGVSIHHPVRFMLACTAAARQISRRPSGVRLRRVLIMATQRSLLQIRSTIRRILNTSAGRHSNPSVCMSVRKKVTTCLQILPDRYSNPCWTHLMVQMVVCGQELPLLSLPGATMPAFTKPIRNILIFWALLAVMVRHGQRLSLSGMRFRFWMCRISVNSRRHAA
2836344..2837500                   PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_15770; phage(gi21231087)            1.72e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA

#### region 14 ####
complement(2968383..2969080)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; BS654_16505; phage(gi100131)     3.12e-51            Shigellaflexneri4cVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2969114..2969308)       hypothetical protein; BS654_16510                                                    N/A                 Shigellaflexneri4cMIPELIISGEEANGEFLMLVPGKMLFCSFCVMLMKQVRKIVSIGEPFFFRVIVPFKIKVMLPTY
2969384..2971945                   PHAGE_Bacter_B124_14_NC_016770: putative mismatch repair protein; BS654_16515; phage(gi374671664)     1.53e-12            Shigellaflexneri4cMSAIENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRSNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV
2972051..2972703                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; BS654_16520; phage(gi100100)     4.52e-30            Shigellaflexneri4cMPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFFPETDLLISVGDNIDRGPESLDVLRLLNQPWFISVKGNHEAMALDAFATGDGNMWLASGGDWFFDLNDCNKRQFCCNSITFHILLKSLTTNMSSHMQIIRVMNISLAKKRRANYSGLFIVCRNRLMASYNKTALIILYLDICLITFRRSLTRFILIPDRRKVGGCHFIKGAG
complement(2972754..2973521)       PHAGE_Escher_RCS47_NC_042128: DNA helicase; BS654_16525; phage(gi100021)             7.44e-94            Shigellaflexneri4cMIPVERRQIILEMVAEKGIVSIAELTDRINVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVLPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLCSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE
2973717..2973944                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; BS654_16530; phage(gi100020)     6.05e-14            Shigellaflexneri4cMKTGSEFHVGIVGLGSMGMGAALSCVRAGFSTWGADLNSNACATLKEAGACGVSDNAATFAEKLDALLVLVVNAA
2973954..2974625                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; BS654_16535; phage(gi100020)     1.21e-119           Shigellaflexneri4cMLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLVPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGAKS
2974622..2974855                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; BS654_16540; phage(gi100019)     2.70e-28            Shigellaflexneri4cMIKIGVIADDFTGATDIASFLVENGLPTVQINGVPTGKMPEAIDALVISLKTRSCPVVEATQQSLAALSWLQQHEVA
2974907..2976018                   PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_16545; phage(gi21231087)            1.55e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRVKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGIGA
2976080..2977236                   PROPHAGE_Xantho_33913: ISxac3 transposase; BS654_16550; phage(gi21231087)            1.60e-10            Shigellaflexneri4cMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRLLAA
complement(2977470..2979566)       PHAGE_Pseudo_JBD93_NC_030918: DNA topoisomerase II large subunit; BS654_16555; phage(gi100005)     5.21e-83            Shigellaflexneri4cMQSYVTVNDLLGVPGMPATTKGIRQALQRFSRDLGDVSRRREGTKAIEYHIDCLPEITRKALRERYVEQLVATENNVSEVKAVTRKTRNPDAVQAIEAYRGSPQLMEERLNALTENQRWVSEARAALVVEVLKLESAGNPGRLKAINFLVEKARKGELPERLQQAAVNANAKRGANRTISRDPLYQWVLKYNQSQNAAERLLLLAPGKRDEIKPEEISWLPEFLAQYRQVNGRPMSEAYEDFVAEWQRRHADEPYMLEVMPSYDVVRYAMKKLPEVVKQKGRVTGSEYRQLEGFTRRDWTAMPVNYVWIGDGHGMKLKCAHPIHGRPFSPEVTFVIDGGTRFVVGWSLDLAENVFAVAGAIQHGIRNHGKPFLYYSDNGSGETADMLDKEVVGILPRLGIKHPTGIAGNPQGRGIIERLNRTLPMRIARRYRTYFGKGADRESLRVLNRDLRSAFNALQQDKPLNDRQKAAMRELPSWAELIEAIREGVEWYNNRPHSELPMKPNGRHYSPTEFRKKRQAEEDTEIEWLSDLELRDMFRPMVERPVRRCEIQWLNNIYYAPELRDEHGRKVLISYDIHDAERITVRRKDGSFICEAIWNGNKRAAFAVSAEYHKQQQRIKGMRKRAEEKIRDAEDEGIQILEHKQAEPWLSNVYRPVGNVVAVQQPEYEEEHDEEFERDFRLGMQKLFAMQEEDDPLA
complement(2979568..2979819)       PHAGE_Haemop_SuMu_NC_019455: Mu-like prophage FluMu DNA-binding protein Ner; BS654_16560; phage(gi418489037)     6.16e-12            Shigellaflexneri4cMRQREDSDRDWPSLKIQLALKDNGWSSFRELSLHAGYAQDSLKAVVRTPNKKYERVISDAIGVPPEIIWPSRYRNDGFIRKAS
