gi|00000000|ref|CP021663.1|  Candidatus Hamiltonella defensa strain 5D chromosome. 2029888, gc%: 40.39%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
320861..320872                     attL                                                                                 N/A                 TCTGTCTTTTTT
complement(334545..335504)         PHAGE_Prochl_P_SSM7_NC_015290: PRGA-formyltransferase; CCS40_01575; phage(gi326784531)     6.53e-13            CandidatusHamiltonelladefensaMSESLKIIFAGTPDFSACHLQHLLSHRQKILGVFTQPDRPAGRGKKLAFSPVKILATQHHIPVYQPHSLGLKEEQQSILDLDADVMVVVAYGLLLPQAVLNMPRLGCINVHPSLLPRWRGAAPIQRAIWAGDQETGVTIMQMDSGLDTGNMLYKTVYPIQPDDTGASLQAKLAALGSQDLLLTLKKMAEGKMHGETQDEQKTTYAHKLTKKEARLDWLLPAAHLERCVRAFNPWPVSYFIINEQIIKVWEAQAMPDSQQVSHLQPGTVLKADKNGIQILTSEGVLNMTKFQLPGKKIISAWDFLNSRNEWFQIGKQLLS
complement(335578..336093)         PHAGE_Synech_S_CAM7_NC_031927: prohead core protein; CCS40_01580; phage(gi100216)     1.80e-14            CandidatusHamiltonelladefensaMSILQILHFPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIVIDVSEDRHQPLILINPELLEKSGETGIEEGCLSIPGEKAFIPRAKEITIQALNREGRSFRLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEKLQKINEKKDK
336216..337316                     PHAGE_Thermu_OH2_NC_021784: SMF family protein; CCS40_01585; phage(gi526118339)      1.06e-33            CandidatusHamiltonelladefensaMLKAEIWLRMSMVKGLNTAQRMKVAEYLQGYADIHPDPDMLMAGGLNQKQCQQFISPLNEKYINATLTWLEKDAHHLLVYGDSDYPKQLTYISSAPLLLFAIGDISTLSQEQIAMVGSRNFSHYGERWAKYFTKELVQTVLIITSGLAIGIDSICHQSALNSTGKTIAVLGSGLENIYPRRHCDLAKRITEEGGAIVSEFLTTALPLATHFPKRNRIISGLSAAVVVVEASLRSGSLITARYALEQGRDVFSLPGPLGSPTSEGTHWLIQQGAYLVNKPQDIIEQIRSSLKWLPMSRSASVAFTQSESSLELPFPALLSSIEYEATPVDLIAQRTNQPVSQILIQLLDLELEGWVSSVNGGYIRLK
337334..337903                     L-threonylcarbamoyladenylate synthase type 1 TsaC; CCS40_01590                       N/A                 CandidatusHamiltonelladefensaMQIKNNPTFASVLKALKKEQVIAYPTESVFGLGCDPDSQKAVNNLLLLKQRPQKKGLILIAASYQQLQPYINDEQVSAEQREKIFTSWPGHLTWVFPTSIQTPFWLSGEFNSLAVRVSAHPLVRQLCSCFGKPLVSSSANMTGQTPCRTSREVVLQFGHQLSVLSGNVGGHMKPSEIRDALTDRLIRSG
complement(337914..338294)         PHAGE_Bacill_BCD7_NC_019515: 6-pyruvoyl tetrahydrobiopterin synthase; CCS40_01595; phage(gi422935983)     8.60e-10            CandidatusHamiltonelladefensaMNTSLFKEFQFEAAHRLPYVPEGHKCRRLHGHSFVVRLEIIGKIDTKSGWIMDFADLKAAFQPIWNKLDHQYLNDIEGLENPTSELLAVWIWDRLKPKLPQLSSITIKETCSAGCIYRGSETHSGQ
338422..338736                     cell division protein FtsB; CCS40_01600                                              N/A                 CandidatusHamiltonelladefensaMKIFILLLLLLAIGLQYSLWLGKNGIRDFVRIKNDVAEQKIKNNELKIRNAQLFAEINDLNEGKEALEERARNDLGMIKQDEKFYRLIPESSKTNIVSPAKQLR
338739..339464                     2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; CCS40_01605                N/A                 CandidatusHamiltonelladefensaMNTYTSLSLQVMAVVPAAGIGSRMKTDCPKQYFSIRGKTILEYAVKPLLSHPCIQQIMIVIHPKDHFFQSTPLARHPKIRVALGGKERANSVLAGLKYFGYLNVHSKWILVHDAVRPCVSDEDIEHLLSITQHSEVGGILATPVRDTIKIAQADMTISSTPERAKLWHALTPQLFPFGLLKNCLSRALAEKKLVTDEASVLECYGYHPLLIQGRSDNIKITYPEDLKLAEFYLNQKHDESP
339461..339957                     2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; CCS40_01610                   N/A                 CandidatusHamiltonelladefensaMNVNMLNLIRIGKGFDVHKFGGSSRLIIGGFISLKNRVPIQMGMWSYMQLTHCSVLQLVILEHFSLIPPQISKMPIVAPYCAEAMRKFWGKNINGITSLLLHKNLKWHLTFQKEKICPKIFSATITLISKPPQPKNWVLLAVVKVLHLKQWFYSKNGA
339968..340933                     PHAGE_Clostr_phi24R_NC_019523: lysozyme-peptidase; CCS40_01615; phage(gi422936721)     2.88e-12            CandidatusHamiltonelladefensaMKKNTRRFLYQSLFMIANFSLFACSNKDSKPAPISVARDHSIKIKQEHDRMHTIIYNRSYDNTLKGSYNGHTYRVKRGDTLFYIAWLTGNDYRDLAKKNNIPEPYTLKIHQLIQLDKNSKQMIKQKDVTSIGLPLRPSHQEIQTTMVDSQSTNAYSEHSGKQNVSGIFQKSAIVAKSTPDVTLPRNPINTPKNHGTAPTLQWKWPTDGKIIDQFSASEGGNKGIDISGSRRQPIFSTADGQVVYSGNALRGYGNLIIIKHSDDYLSAYAHNDKILVREQQKVKAGQKIATMGSSGSSSVKLHFEIRYKGKSVNPLQYLSQR
340988..342004                     PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; CCS40_01620; phage(gi331028036)     5.26e-38            CandidatusHamiltonelladefensaMRQSTLKVNELDEDINFTQDSEKNNLDPEIFTEKFLLVEESTESELDEDEEDELLVENVTQRVLDATQLYLGEIGYSPLLTAEEEIYFARRVLCGDESSRRRMIESNLRLVVKISRRYINRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRAARELSHKLDHDPSPEEIAEQLNKPVDYVSRMLRLNERISSVDTSFGNAAEKGLLDVLSDETDSDPENTTQNDDMKKSVVKWLFELSTKQREVLARRFGLLGYEPATLEEVGCEIGLTRERVRQIQVEGLLRLKEMLQTQGLNIEALFR
complement(342604..343418)         RTX toxin; CCS40_01625                                                               N/A                 CandidatusHamiltonelladefensaIATLKNIDHVETCAETDDVILGNAQANILNGKGDTIYSRGLMAMTFWRKPASCMEERAQIVIVFYKIPVLIRRHLSSKKKMRQNHALFFWNMPRKSSVLKSNSGCSFNYAMTIRASPPRYMISMFLPLMSKPEDRANIFFIPKMAFLRDSLLKSRSILMKKNLSRSLWHNMPQNLIKHFISLKPTAKKPLSSFKKCNIRKLPGFSMSEAKPNYCLIFCDCFLKKRGLMIIYREMNVETPYTVKKVRISWKAKAKEMCTSSKTDCC
complement(343517..347459)         peptidase C80; CCS40_01630                                                           N/A                 CandidatusHamiltonelladefensaMTQEQFPRNSFIPHHQSGLPVHRTKRTPADFVPVTQWDGLYETVMTRSDGGLTRYAGQLIIQLENDPIILDAALRLAEKHPGSVLVQLDQRNHYRVLSGCPKALQGKLRWQVVGHGNPARANTSPSIRRMSGMNPGGLAELLTHFNQHFSKKYHIDSTPNRISLVGCRLINYTPLILRLSLREQNARVFWPTYRPEQNSWLSLMVLALVKNLLLKHYQKSGLRRQARLCFAGIKMVSYKKSTVALLGCYLLYMPGHLGILRILKYKIKDLGILFILLASQICHAKTFFQKTFRINSGNLILFLPVFCQMRPSEVIRAYRSPNKIFWPPTQMKPRLKPTLKKKNPAARDRQKTFLFLNHVMVCYRNNYFLTRNEWPRLMILSIIPFHKIQCSLVDQISIFIPTIRQKTLKSPGCFYLLMILKIQGVLHIFLLQKLHQKIFGYSVRLLETLPKNTLSKSKYVSGLMASPVIQGTSPQKIKRAREIFQIWLVLKNILLLRTNNKFFWSITFPRGGRAYAVIFNSRSFFTSPQENSTEKNYIKHCLIPCCILNLQVKYKACNVTLMINGVQDSWPKEPLTGITSSSKICIGTKGNYTIIRLNFVLKFSLLYKRFITMAVTWRNKKRERVQLIAYSRRAMTLYLSNYTLFNLMLRSARKKYFFHTIKKPKVSGEFIRWKTPLFLFTKALRISLNFLTHWRIKRQGITSCVWGNIFRPNVKALIKKFIGLSMMRILVKYVSRLQMFKKPVTPECCYMIISPAAVRLNKGGGCIGCVSVGADSNVAICLFKIAIIDEHDWFFVDTLEAGSNSEKSPQPTIFKAISYDRYVWGSQSRSLLAPICHMPVSLLAPSFFINGAKTGTGLSSQTRDVGSVIRPGEHLVNIRVTIGRPHYAKDLLSACSGVSSRIRGLHYKAGVTVARYGGAFLNMFGAAFDIYQAQKAATELKTATAPDARQDLQVSLALSSLSASISLGSGLAFLALTGQIALMAGAIGIALGMLTAVAGGSIFQFVRCKRLSDIPHRGYKNYGRDGNFGAQKWTSTSPIRSPKDRQQRLKKPCCNSVKPIFKHYWIPIQKRRCITAQETSCANIPIKNQVKNGLCSVGLDIYSKTLKIKYCPPKLGQFYSIEKKKCRTIYLFIWILPYKKASTNFTTSRHFHLPMTRYRLTLRHIQTGFYLTDWSRLQASPLLICNPIPQCHKPGQNLFFFGRRRRGGRSSRKKKYFHWRGQKLGRKSSGYVYLWHFGPAQPSVFDGMA
347721..347732                     attR                                                                                 N/A                 TCTGTCTTTTTT
complement(347760..348023)         PHAGE_Entero_HK022_NC_002166: integrase; CCS40_01635; phage(gi9634144)               8.81e-21            CandidatusHamiltonelladefensaMEKIHGPNRKNSRDLSPHLHVRHQGYYCYRDPRTGKEYGLGKEKRMAINEAISANRQIFDAPVSLNDRINEVKALSMTEWMEQFTKK

#### region 2 ####
451814..452869                     PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CCS40_02250; phage(gi526244689)     3.39e-25            CandidatusHamiltonelladefensaMDKKHKLPYSPEFKLEGAQVTKQGYRGIEGAKAMGVSIIALRDGVRRSMSEKRGQTISQGKTMTADQQRIQELEARLRKVEREKDILKKASSLLMSEFLNTSRERNLRRAMQQADVKCLGYIEAVINIGRGLIESSLNRSDKLRYVRSKNDVCHGIRTGYSAKSLSGNESHASVGTGQPSATDSSIKGETGTSGYSRVSASVFCGCPSSDVTYLWAGNRWTCLAVLIDLFARKRTGWALSSSPDSEFTCKALWMACESRGRPNGVRFHSAQGCHDTSLTFRQPLWRYRIAKAGYPTQQEARRDLVDDLIGYYSQTRPHQYNGGTPNEPQRLYWKKHKILACFT
452909..453559                     PHAGE_Entero_mEpX1_NC_019709: putative replication protein DnaC; CCS40_02255; phage(gi428781919)     1.62e-83            CandidatusHamiltonelladefensaMADMQNQVQAEQARKKQALIQTLLKNAHIPPRFEQACFESYQPVNAQARQCLAVCQRYAEHWPTRRAQGGGLVLCGRPGTGKNHLAVSMAKSLIQTHQASVLLTGALQMIRAVKNTWSKTAEKTETQVIQDYARPDLLVIDELGVQFGSDTEKIILFEILNTRYEQLKPSVLISNLAPAEMADCIGERVMDRMQEGGGGTLAFTWGSYRQQKSQCV
453594..453926                     PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: hypothetical protein; CCS40_02260; phage(gi937533315)     1.53e-05            CandidatusHamiltonelladefensaMTDLLGPALTCKLGQSMGGARVYIPKKIQANDPLALLLGGQDAERLCAYYAGTVLDLPSKYFFRTVRNHHIHQDYHSGTLTGSRADHLALKYGLSRRQVLNVIRQQCHFD
complement(453947..455038)         PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; CCS40_02265; phage(gi971764756)     3.07e-18            CandidatusHamiltonelladefensaMKKTVNTTNSPAIHHHTPTSKPNKLSRFLKALRKVSNNIYIRFVDLFRCCFSKPKPRTKNTTSKTTQGDSQPLKNQGNFNDNRKKIGPTENGLSASSAKSIEEIMKSIENHTDKHPADLQKYHGASIEYRHVFSQLREKNKTVLTALRLPEKANLKNANLDGFKLICLNAQGADFRGSTLQNTDMKGADMPRTNLNDLDLRTTTLLGAYFDGASLQNVNFSGNKLLELVNFSEAKLQKANFNETELVSVDFMQANLEGATFNNAIFGYQTKLPRAILDQAELKNATCIGTIFYKASLLGAKLQGANCNSADFKRAILKGANLKGTDFTNADLRNVDMTEDELLASGAILNGAKVGNDSTWKKL
455299..455508                     PHAGE_Edward_GF_2_NC_026611: hypothetical protein; CCS40_02270; phage(gi764162319)     5.48e-16            CandidatusHamiltonelladefensaMSISLNTPFRYTGISQDEADFLMHHYQQRGYRMKKYLNEDVRLWDVVVSLPETARFPKTPLSMLNPLWR
455511..455891                     PHAGE_Shigel_SfII_NC_021857: RusA family protein; CCS40_02275; phage(gi526244679)     6.23e-22            CandidatusHamiltonelladefensaMRIELPFPPSVNHYWVRTARRVYLSEAAKRFSRLTAAAVAEVQRQYGHRSFLGDVSVALTLYLPDKRVRDVDNYPKGVLDALTKAGIWSDDAQVRVMTVKKFDADNKIKNGKCVVVIDDYIEEETV
455888..456232                     PHAGE_Haemop_Aaphi23_NC_004827: putative anti-termination protein Q; CCS40_02280; phage(gi31544020)     1.75e-06            CandidatusHamiltonelladefensaMKEIRYRLTAWGNWAGTRVGTEYPVSSWPVPMASSDIRPMLPDNEAEKVDRAVARLKHFDSLGYEIVVAYYRGKASCRAIGRHLGRKHDYVSALLSRSEAYIAGMMATFVETAG
456399..456743                     PHAGE_Entero_HK022_NC_002166: holin; CCS40_02285; phage(gi9634153)                   2.84e-07            CandidatusHamiltonelladefensaMTMPEKEPGFWVALLAWIRGHQADFGYASLAALFSLLRNAWGKHAWSRRLLDALSCSTLAFFSQPLLMMVEGLFHGTLPASAPQVLAIYIGYVGTDYLRARLQSWTERKNGESR
456740..456847                     PHAGE_Endosy_APSE_1_NC_000935: P13; CCS40_02290; phage(gi9633560)                    8.82e-10            CandidatusHamiltonelladefensaMNISPEGIEQIKAFESLRLKAYLCPGSRWTIGYGHT
456983..458023                     PHAGE_Klebsi_phiKO2_NC_005857: putative DNA adenine methylase; CCS40_02295; phage(gi46402138)     1.54e-138           CandidatusHamiltonelladefensaMTFSNQPILVNGDALPYVKTLPDDSIDLILTDPPYYRVKSCAWDRQWKTTGQYLAWLNDYLVEFQRILKPNGSLYLFCSAELAADTEIMPRNHMRMLNHIIWAKPYGRGTGCSKEWLRSYFPGTERILFAEQYGAEGTAKNKDGYKCAELKSEVFASLIDYFITAKNQLNITGKEIEQYMGSYMHRHWFSYSQWQLPNKTQYERLQEFFSQKAAEKKSASSLSKNHHPLSFTHDELKRQYENLRRPFSVTKDVPYTDVWNFPPVLYYPGKHPCEKPAALLEHIINASSKPKHTVADFFMGSGSTVKAAIQSGRQAIGVELETDRFLQTKKEIENLISQINYQGMIF
457269..457280                     attL                                                                                 N/A                 TGTTAAATCACA
458094..458282                     PHAGE_Bacter_APSE_2_NC_011551: phage 21-like group II holin; CCS40_02300; phage(gi212499716)     4.72e-11            CandidatusHamiltonelladefensaMNNIEKYTTGTAYGASATTFLCGALSLSEWALVTGIICSLLTVGLNWYYRHKEYRFRTRNPS
458279..458776                     PHAGE_Bacter_APSE_2_NC_011551: lysozyme; CCS40_02305; phage(gi212499717)             1.36e-69            CandidatusHamiltonelladefensaMNNQLKKRLLVATAGGVLALAAVLVQWHEGKRYKPYRDGGGVLTVCHGHTGKDVTPEEIYSEEECSELMRRDLQIARSVVEHYVTFPLSDLQKAALTSFVYNIGSGAFERSTLLKKLNVGDLSGACDEMRRWKYDEGKVSKGLINRRAIERELCLKPDLLTSPTQ
458942..459241                     PHAGE_Escher_P13374_NC_018846: antirepressor; CCS40_02310; phage(gi410491647)        6.66e-46            CandidatusHamiltonelladefensaMNNMIVTATFYGTELYVVEHNGEPHVPMKPIVEGMGMAWQAQLEKLKQRFKSTVTEIVIVASDGKERKMACLPLRKLAGWLRTIYPNKVKSEIRDKVVQ
459307..459768                     PHAGE_Salmon_SEN34_NC_028699: outer membrane lytic protein Rz; CCS40_02315; phage(gi966201480)     2.54e-30            CandidatusHamiltonelladefensaMTWKILLVIALLLTSMSGVTLYYRTLYYDAEKARKIAVSDREKQQVAFEQLSQQIQTISALDDRHTKELADVQAKNHHLRRKLDRGGRVLVKGHCPVSTPRPSSLGHAGTIELSSIAGRNVLDIRAGIISDQAKIKYLQDYIRKVVLSNQQEN
459774..459971                     PHAGE_Entero_ST104_NC_005841: ORF8; CCS40_02320; phage(gi46358656)                   9.53e-09            CandidatusHamiltonelladefensaMNWIDCRVSMPEINETALIYRKDRKEYLVGVYLDNSQFHYADCCQGIQKMCTANHWMPLPELPKN
complement(459972..460262)         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: plasmid maintenance system killer HigA; CCS40_02325; phage(gi971749638)     1.03e-18            CandidatusHamiltonelladefensaMMKNPPHPGELLREDVINELGLSVKEVAEHLKISRVSLSRVLNQHAAISLDLALRLEMAGISTARAWLAMQLNYDLAQARKHRQPTIERLGLVNNI
complement(460276..460554)         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: plasmid maintenance system killer HigB; CCS40_02330; phage(gi971749637)     4.31e-22            CandidatusHamiltonelladefensaMIIGFRHKGLAAFYATETTRGIQAAHAPKLRRILSLLDVAESPQDLNIPSFKLHPLKGEMKDHWSIWVNGNWRVTFRFVGSNIELVDYIDYH
460605..460943                     PHAGE_Cronob_ENT39118_NC_019934: HNH nuclease; CCS40_02335; phage(gi431811078)       1.77e-36            CandidatusHamiltonelladefensaMQKKQLYNFRWDKARRAFLAKNPLCVMCQAHHLIHPATVVDHIIPHRLRFAQTTEEVTAAQKRFWDEKNWQPLCVQHHNTTKQRMEKGNKGYGCDENGIPNHPNSHWYQGKK
461151..461618                     PHAGE_Entero_mEp235_NC_019708: terminase small subunit; CCS40_02340; phage(gi428781811)     1.85e-29            CandidatusHamiltonelladefensaMAGRRPTPTALKLVTGNPGRRPLNSAEPTPPPYSAQPPTHLSNTAKDTWERLTQLLNSMSVLTLADAFALERLCDIYDEILRYRAMIQRKGETFEVHSQNGVLIKANPAVSMLSDADKRFKSYLVEFGLTPAARTKVRTHDKATHPDELDEFFSP
461569..463314                     PHAGE_Paraco_Shpa_NC_041868: hypothetical protein; CCS40_02345; phage(gi100003)      1.54e-26            CandidatusHamiltonelladefensaMTKQRTLTNSTNSSVPDVTTHYATEVVSGKSLAGPDIRHACQRHLQDLATGNPRGIVWNVSAAQRAIRFFSNVLKLNGGIYEGKPFHLLPWQCFIVGSLFGWKNSEGQRRFRMAYVEAGKGSGKSPWRRVLGCTVWWPIMKREPKSTPPPPKKTRRSCFVTQSLWTNRPGWPNGSRNPVGRARNGIWPFYRPVLFFGLSAPMMGNPAPVLTVPLTKFMNTKVIRSLKCGRAPKAANRHFSSPIAAITKPVCATTITNTGVKWQKGASKMTVFSHSSVRWTKAMTPLKRTVAGKKPIPHVIRSANAICRSKSRKPGVCPPKRAWCVVLISVSGSMRRIPGIVIAGWRVRKPLWIGRWQRPPATGAGFIGQAFNGAGALLARRKNRLCGVLDTARNVIRACQSGGSLCLGKKGVSSCANGECHQPGLCCQTDSGIICTIYPQSYCLRCVSYGLFTARTGKRRGEYGINASRTRLRQIDTIRTLDAQVHIVAAPSFWPITHCQPLPTLERRQCRDRRQKRQPGFQQTPQRSYRRCCRVGDGHRAAEVLEEEIGDLDGFLTNPIMVGL
463314..464585                     PHAGE_Entero_mEp235_NC_019708: portal protein; CCS40_02350; phage(gi428781813)       0.0                 CandidatusHamiltonelladefensaMKKHQSPGKIKSALLNWLGVPQNVTETRSSFHDYSQSQSGQVVTADKALQLSAVWACVRLLSESISTLPLKLYHREPDGSRSLAQQHPVYNVLCRRPNLDMTPSRFMQMVVASLCLRGNAFIEKKTIGPRLIALVPRLPQNITVIRRNNGRLEYHDTENPRGDPSLKPRVIADNDMMHIRGFGLDGVCGMMPLKSGREVFGSAMSLETTAARYFQKGMSASGFVTFDKLLTKEQRETFNKELERFSGSENTGKVMLLEAGMKFNGITLDPQTSQMLESRDHSVEEICRWYRVPPFMVGHITQQSSWASSVEGMNLIFLTNTLRPLLVNIEQEIARCLLENDEDYFAEFSVEGLLRTDSNGRAAYYTTALQNGWMSRNDVRRLENLPPIEGGGELYTVQLNLTPLHQLGQENDGKKARAALNAG
464663..465518                     PHAGE_Entero_mEp235_NC_019708: head maturation protease; CCS40_02355; phage(gi428781814)     5.00e-24            CandidatusHamiltonelladefensaMKKNALPVLPAVFPCPTMTSEILPSALAMWNSRIRASSQDENTLSIFESIGQDWAGEGVTAQRMGAILRSLEGKAVTVNINSPGAICLKGLSTISYVNTPARSLKYWDRPLRLPSLPCQAMRYKSGEVLSSTTPGVWQSVIAMTLPTWRKKWRPLIWRCGRFTSPEPAWMKRRSPRWTRKPGMEAKRRKGLRMPSCPQTARNRITIRPSPPENWMHSWQKPIRPVLNDEDYTPYVVICRALSPLSRYALRCPGFFRDLDATGQCLASSGVNTPLA
465531..466805                     PHAGE_Entero_mEp235_NC_019708: major head subunit; CCS40_02360; phage(gi428781815)     0.0                 CandidatusHamiltonelladefensaMSEMNEMFKKVTASIEEASSKYSAQAEKALKEAQKSGQLSSETRAAVDKMAVELNALREAEKTLQAQVGEVEQHIAQMPVANALNVVSSIGQQVVGMEAVQALGSGMESSKRVIAPINAALISSDVRGTIVAPDRQSDLLTQPKQRLFIRDLIASGKTQSNTIYYVKQKGLTNHAKPVAENTVKPYSTIEFEEATVPVRTIAHLFKASKQILDDFSQLASLIDMELRYGLKYVEEQQMLFGDGTGSNLNGIFTQATAFQAELNPSQRTAIDDLRLAMLQAQLARIPATGHVLHFSNWAQIELIKDTLGRYLLSNPAALTTPTLWGLPVVVTEAAGFKDKFLVGAFSLGAQLFDREEANVVISTENTDDFEKNMISIRCEERLALAVYRPEAFIKGNLTQIEVSPSAPSNAGGARKSGQSGNHGG
466868..467185                     PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; CCS40_02365; phage(gi100083)     1.14e-15            CandidatusHamiltonelladefensaMWINKAQVKRQCRIELDDNSEDMLLESYIAAVEQKTIAHLNRHLYKASVPETDPDGLVINAAIIQGMLLLVTGLYEHRGGVSDMEQLSVFPFFRFLVDDYRLSGL
467182..467565                     PHAGE_Shigel_SfII_NC_021857: head tail adaptor protein; CCS40_02370; phage(gi526244643)     1.03e-14            CandidatusHamiltonelladefensaMTPHYGRAHSRFPDPGQLNKRILFYTRQDEPIGASGTQAANQGACTVWGKLLPVSDTLRIHSFQINKTVTHKIIVRYRQSLYDSSQAVIKGVVYQIRGVTDIHSAGRFLAFSCEETSSQPERGNEFG
467552..468073                     PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; CCS40_02375; phage(gi23505455)     5.03e-63            CandidatusHamiltonelladefensaMSLDNLHIEFHQPKDLVFNRLLVRRAFMKIGQRHQEEARRLLMRRGRSQAGENPGWRTGRLARSIGYYVPKATSGRPGLMVKIAPNQKRGIGSQDIAGDFYPVFLHHGVRSASYGMPKQHKRQKRHHKSGGWRIEKRQNYMVATLMRLKSWTCYTLKKALRKSLRPERRRSHS
468070..468606                     PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; CCS40_02380; phage(gi100086)     5.01e-61            CandidatusHamiltonelladefensaMKLSPVISALRAHCPRFENRVGSVAHYEDLPECGKLALPAAYVLPGEEVVGEQRAQNAYWQTLTERFSVVVILHHRRHGSGGRPSVDLLHDVRADIWRALLGWAPDPEGGTIEYAGGQPLEANRAEYHYLFEFQVRTEIHPEDTRQAQELAALPEWGTLCFERPSPEPDLFLSLESTK
468698..468886                     hypothetical protein; CCS40_02385                                                    N/A                 CandidatusHamiltonelladefensaMPEDSYWFRRLREGEVVRVAPQGLEPHDENAPVHEEEPEEEPEEEPEEEPEEKPEPEHEDTP
468883..470380                     PHAGE_Shigel_SfII_NC_021857: tail sheath protein; CCS40_02390; phage(gi526244647)     7.93e-27            CandidatusHamiltonelladefensaMSISFNHIASDVRVPLFYAEMDNSRANTAQESRRSLLFCHALEDAPIERNTPVRMPTEALAQKLTGRGSQLHRMVTAYRRIDPLGELWVIAVPEPKTPVGRPGPVWAWSADLRLQGCACGAAVAFGWRIRPRRSMRPSISPRPSTPHRICRPPDSGRMGRFFLPGIRARAATFPCRRIRCQRERRPRLRGWLWSTGGETIIPPMPPPSPPWAIPLLILSVCPFTTLSHYGCLSRKTTRAAAGVRTDNFTVMCTRPKRAPYLNWLPWASLTHRIRSPAMNRPSRPAWMKGWRHTGPLGGFSAGRPRQTHPNRRAQRRPARARGQTLYVDRAAIAPVPWHRDRVCRRGCLADTARHHDVQKKCGGRGRQQLSRQRNPAHQCVCPQATQIGHHLQVWTTQARRRHPLWCRPGDCHALGHSGGAMRGVSPARAGRHGGKCGGFPCPSHRRAPCAPEPAGCPVSARLRQSITCVCTASSISVAIPGERLA
470380..470736                     PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CCS40_02395; phage(gi526244648)     2.46e-59            CandidatusHamiltonelladefensaMRKTAGTCYFKVDGQQLTLSGGIEVPMNTVVREDILGLNGEVFYKETHRAPFVKGTFIVERAFPLQKLVSATQMTLTAELANGQVYVLSGAWLSGEANHHTEEGTVDLEFHGQEGFYQ
470733..471020                     PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CCS40_02400; phage(gi526244649)     1.31e-39            CandidatusHamiltonelladefensaMSSTLEPKTLMLARPIQAHGETVTVLEFREPTGKDVRELGYPYQLGQDDAVKLLAGVTAKYVSRLSDIPLSSVDTMSPADLNAAGWQVAGFFFPG
470987..471175                     hypothetical protein; CCS40_02405                                                    N/A                 CandidatusHamiltonelladefensaMAGGRFFLPGMSAEDVVAQYFDCAHYWRLNPLSLLEAPLSVLTLLIEQGHRIEKARRGHGGI
471162..472942                     PHAGE_Shigel_SfII_NC_021857: tail protein; CCS40_02410; phage(gi526244650)           1.46e-66            CandidatusHamiltonelladefensaMAGFELKALITAKDRLSPQLTRLQKKIHTFRKNLTQASRGALGITAGLTAGATVALRAFARQEDAATGLKVAMMQAQGQVGAHFDKMNQLALTLGDTLPGTTADFQQMMQMLVRQGISAERILNGVGQASAYLAVQLNKTPEAAAEFAAKLQDATGTTAKDLMGLFDTIQRAFYLGWMTRICCPFSPKPVRFKWSTRTDSRPLKAWRPSVSWTRWAKASRRAMPCVKFSRDTSKKCAGITSCKGSGLSWISPMDEGDLGVWILSLRNWTNSNNPMCNGLWSSKGFLARMRKPDRWSTPCWTKGGQGMTRLCRKCAYRPAINGPLSWGRLKTCGKRPVPRPMAWLPARSFLAISHPRDATCRPVSTPGCRRIPMLSAAWSVWWRASRPSNSRYWASTWPSNRPPRWPARAGSQGVWRPESSSPTGDRSGAFLLRCGKIWPSGLQAALRPKIYGPRFIPWPGSRNGATPWTISTACGTKSVLVLSPSVAWTGYRPGQVRDGTGPAPQHLRFLRFPHLGSVRAHFSPRFSETRRESPSPFTMRRPAPCNLQAHPRPGSVMMSDTTALPGGAA
472949..474280                     PHAGE_Shigel_SfII_NC_021857: tail/DNA circulation protein; CCS40_02415; phage(gi526244651)     1.43e-160           CandidatusHamiltonelladefensaMTDWTKRLHPASFRGVPFQVEGDEATFGRRVQTHEYPNRDKPYTEDLGRATRRFQITAYLVGDDHLAQRDRLIVAIETPGPGTLVHPYYGELSVCMEGDVRVRHSGREGRLCRVSFSVVEAGELSFPTAGIATSQTLLSSSAALNDRISDAFTRVGLKGLPDFAQAGVLANAKAMMGHITQAFDSIDSGIAAASRLLQGDMSVILKPGSSGKHLIEAIQRLWRSGRRTRHNANMLTQQIKTLSGITLGHDLAPRGVWKSDRPSVQAERRQSNRIAALLRTTAIHEAALRLTQLPPPRTALLPVNQSEKRQIQVNLSHPALHAGLDASDSEIESTAVTWETLIAVREALNQAIEREQTLSPDDALFLALQRVKTEVHRDMATRLAQGEKTVLRTPETVRPALVLAAQWYDNASRERDITSRNRVPHPGFVPLTPLRVPARWMTP
474265..475323                     PHAGE_Shigel_SfII_NC_021857: tail protein; CCS40_02420; phage(gi526244652)           1.35e-158           CandidatusHamiltonelladefensaMDDPVILRVNGRDWGGWTRVQISAGIERLSRDFNVEITRQWPGESGSAPLQPSIQKGELVEVLMGQDKVLTGWIEATPVRYDALSIHAGITGRSKTADLIDCAASPTDFDDHTLIQIATQLTKPFGITVINQGVSKTRLQRLQADYGETVHEVLNKALGLQQALAWDDEDGNLLIGRVGNDRATTALVWGDNILSGDTEQSIRDRFSEYQVAGQRSGDDADFGEATLTALRAKAKDRQITRYRPQHIQQSGQATGASCRQRAGFEAQQRAARTEETTYTVQGWRQGNGSLWQPNQRVIVFDPVLGFHHRELVIGEVVYTQNEGGTLCQLRVAPEAAYIPPLQEQKSEEEDFF
complement(475344..475667)         PHAGE_Escher_172_1_NC_028903: helix-turn-helix motif protein; CCS40_02425; phage(gi971754318)     9.17e-06            CandidatusHamiltonelladefensaMITVEESSGNIYADLGISDPDVMLVKAQLATKIGEIIQGRNWSQLHAAEVLGIPQSKLSKMLRGQFRGISESKMLDCLTRLGRDVQIVVRPARRAVSTGRVDVVFSK
complement(475654..475965)         addiction module toxin RelE; CCS40_02430                                             N/A                 CandidatusHamiltonelladefensaMPSDVQDTFGYALHQAQSGKKHPQAKSLKGFGSAGVIEVVENSVAGTFRAVYTVKFEDAVYVLHCFQKKSTQGIATPKPDMDLILERLKAATSHSKGEKNDHS
476079..476648                     PHAGE_Shigel_SfII_NC_021857: tail protein; CCS40_02435; phage(gi526244653)           1.60e-38            CandidatusHamiltonelladefensaMKNALWTFQRGLSRLCSRLMVRGTNSTAACQRVDVSLIAGETKAGMEYLEPYGFTGIAHAGAEGVALFLSGDRSHGIVINMADRRYRLKDLQTGEVALYTDEGDHIVLKRGRVIEVTTDTFVVKAKNKVVLDTPRVDTSGEITAEKSIVSQSEIQDKLGSLSSMRDQYNRHTHPGDSGGSTGQPHQRMR
476755..477978                     hypothetical protein; CCS40_02440                                                    N/A                 CandidatusHamiltonelladefensaMTGHHLDIKVEGQGTKAINAQADSTVDIKDSTVSSHGKNSFGIVALRRTKVTGHHLDIKAEGQGAKAVGFSQNSTIHLHDSHIQTLSKPSAVLYSDAGSTDPTVTITGGSLHAAGDLIVSKGGKTNLVFSKVVISPPGSGHAIHFTGTGGEVDLTLNQTALYGNIVAEGGNKAKVTLDSGSTWSFKENATVTELNNAGKMVFEPPHDSPSFSTLTTDHYEGDSGKILFHARLEGDDSPANQLIINQSSKGTTRVTVRNVGGKGGATKDGIRLIEAKEGTDGTFVQDGPIVAGSYQYSLRKGTTEGSKNHWYLVSSWFARPESLSYAQNLHAANTMFHMTLHERLGETQYTEALSEDSPVPGMWIRASGGHHTSSLSDNDGQSHRYVMMLGGDIAQWSSDGLNRYHLG
477978..478232                     hypothetical protein; CCS40_02445                                                    N/A                 CandidatusHamiltonelladefensaMGGYGHEYSTAHHRHNEMSSQGKVRGYSAGGYATWYQNPKAPLSFYVDTWALYHWLKNDVTPEERRTESYKSRWVTASVEGDIC
478196..478678                     autotransporter outer membrane beta-barrel domain-containing protein; CCS40_02450     N/A                 CandidatusHamiltonelladefensaMGDGVCGGGYLLTAGEVVSRSGILHRFWVQPKAQLTWMNVKPEDHTDINGTRVTGQGNYLQSRLGLRAHLLGHSPQDEGKQREFEPFIEANWIYQPKPMAIRMDDKTHEIQGARHLGEFKMGVDAKLSARLHLWGHVAQQIGTKEYTDTRGTIGVKYHFQ
complement(478732..479963)         PHAGE_Burkho_KL3_NC_015266: gp47; CCS40_02455; phage(gi327198092)                    0.0                 CandidatusHamiltonelladefensaMTHAQPPELLKQARSRFTQREIAEHAGKDTRTLRRWEKGETPCPSMLEPVLRDLLQQPSASTKKMSPRFRFIDLFAGIGGIRMGFDAQGGECVFTSEWNRFSKKTYIENYGDPHPFVGDIVPYPAEDVPDHDVLLRGFPCQPFSIAGVSKKNSLGRPHGFECTTQGTLFFDVARIIATRRPRAFLLENVKNLLSHNKGHTFNVILQTLRDELGYDVHYRVIDGQHFTPQHRERIIIVGFREKTGFSWDDLKLPEEGPRLASILHRTDGTEPVLPWDGERFFDHDRRAVPPRYTLTPTCRPMQTSTAPPAMGDLAWPIPIVHAHCRPGITRTGQKSWYGRAATNGPDARHANAPAWASLTLSRYLSVIHRLTVSSAIASSCRSCRKSPASRPTCWLRCIAPVFLMVGA
480024..480203                     hypothetical protein; CCS40_02460                                                    N/A                 CandidatusHamiltonelladefensaMWLNKLGKKVRKTPEVPSGPISFLMTTGPNCLDDKGFRLEAGCGGSVDDFIAFIFLNKT
480346..482055                     hypothetical protein; CCS40_02465                                                    N/A                 CandidatusHamiltonelladefensaMFANNLTPSNPNINIHKPNNTLSSLKSGQMSNQLVSIKNRNDFFSSEIPSQKKEQMKFISQELNRLVDAPKFWEEIKRIGSSLSKEQMENIQNEFQNAIKTEQFDDKTIQDLYKRTNKMFKEDSILRSYFPVYSKQKIKPLMHALNNLKTLATPTKDSKFWKIVGQILTIVNGGAGKTSGMTTSSTQGSALEGFLGTATIMAFNGLEEHHARVKENLRRDKQTELQKQNELAQKYKHRAYLREERTEQIASFSASSAQRYQYKTNERKQIELENAIEVRSTQEPGNGSIPADSLINETESGSSNRLLNDSKLLSDSTSQSLISNFIKTRLFIKMQKSIRTFCNEKSTDNYKKMLNRISEWKLSKRDNLSNKNWACTTRYNYISKLDNWIIDEGCQLGVYPKKNKGYGENHNCYAYAMKCLKPEGLGLNSTPGLFSGTSKKMGFAEAVIEDGKKQRKDVHLISKNINDLPKKTNDGTYLVALFANDFGYHFMRRDEPTGLWSHKNGAFSEEEVSFYEIELEKPIPICNNLFLNIARDPSKIGCNMQFSSYLEVPDDGLQVQGVSEAKLLH
482458..482469                     attR                                                                                 N/A                 TGTTAAATCACA
complement(482733..483794)         PHAGE_Entero_HK022_NC_002166: integrase; CCS40_02470; phage(gi9634144)               3.96e-110           CandidatusHamiltonelladefensaMARKRKTANRDLPPHLYVRNNGYYCYRDPRTGKEYGLGKEKRMAINEAISANRQICDAPVSLNDRINEVKTLSMTEWMEQFTKKQQRGLRPNTLRDYRLRLKAIHNTFGDKEIKKVTTKEIAEFLNSYPEQGKTATAKLIRGILIDLFNEAIAEGHLDNNPAVPTKNPRVQIKRARLSLEEFLLIRQCSHPRSTCIKLGMTLALLTGQRLGDIQQMQWQDIHDGKWWLKQEKTGMKLAIPLTLSLGAIQETFEGILNECRKKIGGEKYVLIKEGKNNPEYARLSVGFKELRKKSDLKWEGKTPPSFHEIRSLSARLHSDEKDKEFAQKLLGHKSANMTDQYRDSRGSEWETI
complement(483769..483996)         PHAGE_Entero_mEp235_NC_019708: excisionase; CCS40_02475; phage(gi428781837)          1.20e-14            CandidatusHamiltonelladefensaMEITLKEWNQKQPRPRCIEQVRRWVRAGIIYPAPRLDGREYLVQANAIKINPLSLKHHTGQTLMEKIHGPQKKNG
complement(484098..484520)         PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein AntB; CCS40_02480; phage(gi31544013)     3.37e-25            CandidatusHamiltonelladefensaMSQTHPLIAIKAHLINGKTVQTVNARDLYHFLEVRLSFSTWMKNHINRYEWVDNTDYLVFTHSGPHAGRPFKDYVLTLEKAKEMTMLTCTEKGHELREYLMNVDKEPFESLNDPAELRRLLLTYTDKVRALENRLNEILS
complement(484638..484955)         PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CCS40_02485; phage(gi526244689)     3.00e-15            CandidatusHamiltonelladefensaMSASVFCGCPSSDVTYLWAGNRWTCLAVLIDLFARKRTGWALSSSPDSEFTCKALWMAEDADNVISEMHALLEAAVHQNEHTLASTLEKWQQRELKQFIHRGQTT
complement(485250..485465)         PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CCS40_02490; phage(gi526244690)     8.57e-08            CandidatusHamiltonelladefensaMGVSIIALRDGVRRSMSEKRGQTISQGKTMTADQQRIQELEARLRKVEREKDILKKASSLLMSEFLNTSRE

#### region 3 ####
727545..727556                     attL                                                                                 N/A                 TTTATCAAAATA
735704..735715                     attL                                                                                 N/A                 CTGTTGCAAATA
735704..735715                     attL                                                                                 N/A                 CTGTTGCAAATA
complement(741819..742523)         PROPHAGE_Brucel_1330: transposase, putative; CCS40_03670; phage(gi23502708)          5.22e-54            CandidatusHamiltonelladefensaMNVFKGRHFNQDIILWAVRWYCKYGISYRELQEMLAERGVSVDHTTLYRWVQRYAPEMEKRLRWYWRNPSELSQWHIDETYVKVNGQWAYLYRAVDSRGRTLDFYFSSRRNSKAAYRFLGKILNNVKRGQIPRFINTDKAPTYGRALTLLKLEGRCPPDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQAESFYFGHPLGEMRLVNRVFEM
complement(743127..743375)         hypothetical protein; CCS40_03675                                                    N/A                 CandidatusHamiltonelladefensaMLDTIWGLEHGFDKERQSLANEIAQLANEISDLENEITDWLNKVAKKSKATLEIYQLAHLLSSKKFSVLANLLLSNRIHLFW
complement(743369..744445)         PHAGE_Edward_MSW_3_NC_020082: hypothetical protein; CCS40_03680; phage(gi448261087)     5.12e-19            CandidatusHamiltonelladefensaMKSSLENQNSSNRFKKIERLLKSYLKSCKEMSLKFIILQKTLPYDASLDEIENLKKQKDSALKQLLKQEWHWEVPLNLRKANLENMNLQGINLSYTDLSGVKLCGANLTNSNLMCAKLCDADLTGADLSGSDLKGLDLIGANLINVDLTNTDLRYSNMTRAKLHGAKMHQTNLSEVDLTDVDLRSIKMGWINLSEAKLKECLLPLFIEADLGKVNVNEIRLGYSNPPEAQNSRGILVLGIPPKWNVDLLNQYLSNMNNERGSLLKTIDSIDCNKTKARLAGELIESLKNNDVSTVALPLLSMLNKPPYIEHDEIADWLNKVERENKGALEISQLTELAPPMILNMMRLRIIKMCFRAC
744762..745140                     hypothetical protein; CCS40_03685                                                    N/A                 CandidatusHamiltonelladefensaNKELGSGDVLYIPKEFHHEAAMSYCLNFWTDNSLRMIRNWTESLADQNHRGIEYAPRPIYFCVTTHRNSASRYDRSPRHDEPIFTPKKRTSGNLVCSGDVPNFLVTEGAFGRGLRPFTGSNFIATG
complement(745395..746234)         replication protein RepA; CCS40_03690                                                N/A                 CandidatusHamiltonelladefensaMPRKSYVFNACPVFTPPTSEKQRPAFIRYAMQCASEKDVARSELLYILQGTIPTRSRRLNEHRARALRAMALGMLYHFNIASGLVMASVEQLSDECGLSTVSDAGNKSITRASRLLTDFLEPMGFVHCEKVWDRIMESYIPKLITLTPLFFLLFDVSSEKLEKAQHQQIGWINKGLMEKGEESITLGEARRRAKEQHIKRAFEYRKSRYAMNKKRKLARRMAKLDEQTAKQTLLQKIIQRYSLVELNEMGPKGLRNQVNMEYHHLRKIASTPPPDIPVH
complement(747626..748408)         PHAGE_Bacill_G_NC_023719: gp245; CCS40_03695; phage(gi593777701)                     3.07e-05            CandidatusHamiltonelladefensaMKQPTICLRDVNLHYAALVFKERSLKSLVVNCFKKRKLTNDVKDVHALKNINVDIRGGERIGLLGHNGAGKSTFLRTVAGLYPISSGELKVEGEVRSLFDLSLGFEQDATVSLGFEQDATGRENILYRGLLLGLSPSDMHEHAEKIIEFADLGEFIDYPIKTYSAGMQVRLAFSISTSVGGNILLLDEIIGAGDAKFMSKAKQRIAQLIDQADILVLASHDFHTLNSLCQRGLVFYRGEVVFDGQISDAVNNYKKINGLS
complement(748405..749190)         ABC transporter permease; CCS40_03700                                                N/A                 CandidatusHamiltonelladefensaMSNDYWVKIWRSRFFWIHLVFSDLRSRWRRSFFGMAWAIIQPLGLTLLMSFVFSKLFHSDIGTYAPYIFSGVIIWDYILTSVTGGALSFVQAEAYIKQCRHPLAIYTLRTVLVGLMILAFAIIALFVWAAVVFPEHIGWHWLAVLSIFPILVLITWPFATLLSYIGARFRDLPHVMGLIMQALWFMSPVYFQAKMFRGGGLDLLIDFNPVYHILQIVRAPLLEGKWPTAANYGYALIPACVFAFLAWLVGRKFEKRVIFYL
complement(749849..750079)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CCS40_03705; phage(gi41057343)     1.71e-17            CandidatusHamiltonelladefensaMKARPRQPRYQPSGKEAVYAPEHLNRQFTVKAPNQVGCGDVTDIWSGTCWLYLAVVLDLYARKILGGLFPLLPTVN
complement(750341..750547)         PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; CCS40_03710; phage(gi41057344)          1.05e-08            CandidatusHamiltonelladefensaMGVSISALRDGVKRAMSEKRGQTISQGKTMTADQQRIQELEARLRKVEREKDILKKASALLMSDFYNR
complement(751101..752147)         serine hydrolase; CCS40_03715                                                        N/A                 CandidatusHamiltonelladefensaMRKKKSGFKSDPIKRFDELKKSGRLSGLHGVVAILGGRIVFEQYVDGNDMKWAHPLENVRFGPNTLHDIRSVTKSIVGLLYGIALGEGRVAELDEPIVSQFPKYTDLASDPKRKRLTIRHALTMTLGMAWNENTPYTDPANSEIAMEQVSDRYRFILDRPILAEPGRGWIYSGGAVALLGKIIERGTGQALPTFANEKLFSHLGIDSIDWIRSQDGEASAASGLRMTPRSLARIGQMILNEGESEGCSVVPKSWLHESFQPSAIVDIGWPGMRYGYLWYVGEEAITEKTGTYGERFVCALGNGGQRLFVFPGLDFVLVITAGNYNSPDQWKVPAALLYEVFLPSLTDI
752228..752323                     DNA partition complex ParG; CCS40_03720                                              N/A                 CandidatusHamiltonelladefensaYLFKAACAKKSTSITEVIKDLVDNWLKENDR
complement(752380..752790)         PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CCS40_03725; phage(gi157166006)     1.07e-05            CandidatusHamiltonelladefensaMITEAIHATKELVKAVPLLGGSHSQSDYKAALELVNYLIDKDDENPLIDILSIKISEYEENSEQFYEFNKALEAMPTGVAVLRVLMDQYHLKQTDLKNEIGSKSLVSQILNGKRSLTIAHIRALSARFNVRCELFI
complement(752801..753097)         PHAGE_Riemer_RAP44_NC_019490: DUF2136 superfamily protein; CCS40_03730; phage(gi418489860)     2.05e-07            CandidatusHamiltonelladefensaMHIISKEPFEVAYRKYGRDSYAIVSTYRSLKENNFKNPDELKNLFPSLDKFKYREKWWVIDIGGNNLRLIVYINFMNKRIYVKHIVTHSEYEKLNKYYR
753327..753962                     PHAGE_Sodali_phiSG1_NC_007902: ParA-like protein; CCS40_03735; phage(gi89886027)     1.67e-31            CandidatusHamiltonelladefensaMIILIGSQKGGCGKSTICVNICSELACRKKDVVLVDSDRQGTASNWLTDRNVISALPTIHSLQKFDNIRDTLIDLKKRYEYVVVDTAGRDSRELRTGMTSSDIMIIPFRPSQPDLDTLPRLTEIMTEAKDLNPTLRAVAILTLAPTNPVINETNEAKEYLKDFPELELMKTIIRDRKVYRDAMSEGKGVVEMDNLKAKKEIQSLVKELLLW
753956..754213                     hypothetical protein; CCS40_03740                                                    N/A                 CandidatusHamiltonelladefensaMVKRRTPNIQPPQIEKKIEDFASGADRLSTEVVSLNSEAPRDYKAIRIPFNQYEYQLLEKLCKKTNRSKLNMMRYALRFYDENLK
complement(754565..754771)         PHAGE_Burkho_ST79_NC_021343: HicA protein; CCS40_03745; phage(gi509141624)           5.51e-09            CandidatusHamiltonelladefensaLSDVFARPVSGSIKWSDIEFLFIALGAEIHEREGSRISILLKRKKIFLRLHPRPTTDKGAVNSIRIWLD
complement(754898..755518)         PHAGE_Sodali_phiSG1_NC_007902: hypothetical protein; CCS40_03750; phage(gi89886024)     3.52e-30            CandidatusHamiltonelladefensaMNNAMKQLCLSCTIPSGFTNAESEVYSNVAMTKLFALTDECSKVLDVFRSQKEAVCRKKCPLSLLSTLPCFYKHPSQPWLFDFFPLFDEQNGYIGAFFHARPFLFLSPLEYVEGKSPHKMTLRQTDKRFNQRECEIIFFTLQRLSRKEVARKLNLSYRTIENKLQSIYEKAGVQNGQQFTDYFCTSGMNQYLPPELLPSGRHVISV
complement(756135..756668)         transposase; CCS40_03755                                                             N/A                 CandidatusHamiltonelladefensaMKKTLRHPKANEEARQGFQEKIAGYQKQGKSLVYLDESGFAHDMPRLYGYATRGQRCFGTHDWQAKGRTNVIGALLGVTLIAVGLFNCSINSDVFYAWVTQLLLPALPHPCVMMMDNASFHKRKDIQHAILNAGHSIEYLPPYSPEFNPIEHTWAQAKRKRRELQCDINTLFSEHIM
complement(756580..756957)         transposase; CCS40_03760                                                             N/A                 CandidatusHamiltonelladefensaMSYSVDFRQKVLSIREKEGLSIRATAKRFHVGTDTLRRWLKRIEPKPSGPRRGKMDKEAFIKDVAEYPDSYQRERAARFGVCPKAIWQALKRWGLTYKKNSASSQGKRRGTTGVPGKNRGVSKAG
757040..757606                     PHAGE_Bordet_BPP_1_NC_005357: repressor protein cI; CCS40_03765; phage(gi41179362)     4.45e-05            CandidatusHamiltonelladefensaMRSRGETKASFSERSGITRTTIYKILEGKVNKVQETTLHKIASFFGVPCDEMECYDLEQIQRQSETLSIDGNKNPSAVPIIPEKDFIKNLNKTVGQLVTEYPLTYIFDDTSNVIALKIESPFFDIFSQGDILIIKRSALSDSQSLHLYVTPQNQLIVKNREVLIEKKLKSENLKLIGFILEERCENEF
757596..758465                     PHAGE_Halovi_HCTV_1_NC_021330: hypothetical protein; CCS40_03770; phage(gi509140748)     2.32e-06            CandidatusHamiltonelladefensaMSFNNKFKLLGFTRSPDLAAKIMVLSTGKTITMGVNQLANSEIADDLNKNEIRALCRKIYGEKNVKTAYEIGDRNERSWNAYMFISMMLTIVFIYSNVTGIKPVKLDVFNLIVPAAIFIYPVTFILVDILNEFYGLRMARKSIFMAFFVNVVFVFFLWTTTKMPTLPMWALSDSYNSMMTGILSVLFASSLSYLISENINSYLLWKIKILTHSRFLFIRVITSTIFAALIDSILFITVAFYGLLDLNTIKIMIISQFCIKLIYAVLGTFPIYGARWLFNNYIHKKEIRT
758468..759310                     PHAGE_Vibrio_ValKK3_NC_028829: NADPH-dependent 7-cyano-7-deazaguanine reductase; CCS40_03775; phage(gi971747338)     1.22e-46            CandidatusHamiltonelladefensaMQDNDGIYAKHLGEKSDYIETYTPSLLEPVPRAFGREKIGLIDDTLPFDGFDLWTAFELSWLNQKGKPMVGMAEFKVPAQSKNLIESKSLKLYLNSLNQSHFDSSKSLQSVLSKDLSNTAMGAVSVTVFEGMKNDDLHIHHPEGVNIDDIDIEVHDYRFNEGYLKDATQETAPFVSETLMSHLLKSNCLVTHQPDWGSVFIKYEGNKIDREKLLRYIISFRQHHEFHEQCVERIFLDIKKYCRPEKLTVFARYTRRGGLDINPFRSNYESIPNIKRLIRQ
759410..759421                     attR                                                                                 N/A                 CTGTTGCAAATA
complement(759462..760167)         PROPHAGE_Brucel_1330: transposase, putative; CCS40_03780; phage(gi23502708)          5.19e-08            CandidatusHamiltonelladefensaMAPFRGRHFEPEVILRAVRWYCKQGISRELKEMLSERGVKVAPTPIYRWVQRYAPEIEKRLRWCWRHSPFRSLPVAHRNVREGEWRLGLSLPGSGQQRPYSRLLSFPSSSHSSRLAIVETDFKRKEVANPSMYQHRGADISPCPRPSKKGGAVPTPTQAGIPKQPDMRPWQVEKDHPRHSWVIHEDGRHDKGHGSHACAAKRSGIILFWSSLGRRASGKSSFNT
complement(760232..760789)         PHAGE_Entero_P1_NC_005856: Cin; CCS40_03785; phage(gi46401653)                       4.69e-73            CandidatusHamiltonelladefensaMLIGYARVSTQDQNLALQIEALTKAGCKKIFEDKSSGSRAQRPGLVKVLEILREGDTLVVWKLDRLGRSVKNLVDLVGELHKQNIQFKSLTDAIDTGTASGRFFFHVMASLAEMERELTVERTRAGLEVARQLGRKGGRKRKMTDSKIESAKKLLANGIPPRDVAKNLGVSVPTLYRWIPASTYL
760803..760814                     attR                                                                                 N/A                 CTGTTGCAAATA
complement(760850..761554)         PROPHAGE_Brucel_1330: transposase, putative; CCS40_03790; phage(gi23502708)          5.22e-54            CandidatusHamiltonelladefensaMNVFKGRHFNQDIILWAVRWYCKYGISYRELQEMLAERGVSVDHTTLYRWVQRYAPEMEKRLRWYWRNPSELSQWHIDETYVKVNGQWAYLYRAVDSRGRTLDFYFSSRRNSKAAYRFLGKILNNVKRGQIPRFINTDKAPTYGRALTLLKLEGRCPPDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQAESFYFGHPLGEMRLVNRVFEM
768622..768633                     attR                                                                                 N/A                 TTTATCAAAATA

#### region 4 ####
1494848..1496462                   PHAGE_Agroba_Atu_ph07_NC_042013: RI membrane protein; CCS40_07230; phage(gi100135)     2.96e-28            CandidatusHamiltonelladefensaMSRSLSIALAQLNFCVGDIKGNTELILNVLQEQKNQADLVLFSELALSGYPPEDWLFRDDFYHSCETQLLRLQKASHEVACLLGHPFREKGRLYNALSVFSEGKLLARYYKQCLPNHGVFDEARYFSSGKTTQILAFKGYRLGLLICEDLWHEGPVDSAKAAGAEILLSINASPYDQKKYQRRQNMLSQHCLRTDLPLIYLNQVGGKTNFLTGVLKYIKQAKQCLNCPLFLKKHFYANGKKIRSKQNRYRANLCLFLKNIKHWWRCAIMCKKMVFKVFWVYLGHRLRTDIGYRCRRLGEKQGTGLYDAVTLYSKRQCDLCPNSSQTFRRHINIVYRTDVGVFIKPQRTPRRSQRHHERKPAGTLQGYVADGFIQSAWRHCAHHQQKNGSRLFDALWRYGRGLCAERRPENLGIFFSKIPQYPIGDSEKSDLKTSFCGATQSARYGQLTALCHTCDSRLCARSIRRISDRRRIRKGSAARDFIGGSKRIKTSISCGPTNHRSKLLQRQALPYYLWFFTIA
complement(1496688..1497221)       transposase; CCS40_07235                                                             N/A                 CandidatusHamiltonelladefensaMKKTLRHPKANEEARQGFQEKIAGYQKQGKSLVYLDESGFAHDMPRLYGYATRGQRCFGTHDWQAKGRTNVIGALLGVTLIAVGLFNCSINSDVFYAWVTQLLLPALPHPCVMMMDNASFHKRKDIQHAILNAGHSIEYLPPYSPEFNPIEHTWAQAKRKRRELQCDINTLFSEHIM
complement(1497133..1497510)       transposase; CCS40_07240                                                             N/A                 CandidatusHamiltonelladefensaMSYSVDFRQKVLSIREKEGLSIRATAKRFHVGTDTLRRWLKRIEPKPSGPRRGKMDKEAFIKDVAEYPDSYQRERAARFGVCPKAIWQALKRWGLTYKKNSASSQGKRRGTTGVPGKNRGVSKAG
1497567..1498061                   PHAGE_Entero_SfV_NC_003444: tail/DNA circulation protein; CCS40_07245; phage(gi19549005)     3.36e-09            CandidatusHamiltonelladefensaMYGGGAVIDQRSNLIVACETAGAGTLIHPTYGELTVSIPSGGLKIVEQWDNGRYFEFTLRAIESGLKVFPVTTSTPLPDEESWLKSIATTTLQFVTTVNSILRKSPALIQTLQSTAVFWVSQVTGTLNQANNLINTMTDVFDSNHSGFSHRAIAVWRVTKPTRS
1498242..1498682                   PHAGE_Rhizob_RR1_A_NC_021560: hypothetical protein; CCS40_07250; phage(gi514231489)     4.97e-05            CandidatusHamiltonelladefensaMFETGNDVPGVDDAVQDAAILLFQRLALACLGRAALSYQPVSPDDAWDMMTLAGEALEVGAVNAADMGHDDTYRDLIALHNTVVSTLTERGANLARFTEYQFDTSLPSLVLSERIYQDPARNNELVRCVNPVHPAFMPLDFKALSK
1498679..1499761                   PHAGE_Entero_SfV_NC_003444: tail protein; CCS40_07255; phage(gi19549006)             9.04e-45            CandidatusHamiltonelladefensaMTTEKTEKVDELYLEVRARALHGWDRIRITRGIERMPSDFDISIMEYYPGGEQQWVSPGDPCIVKLGEDIVITGYVDRCCSSIRPNQHQIRVTGRGKCQDLVDCSAEWESNVMTGLDALGMSQRLAAPYDIHVTTDVTGLQAAPQLTINWGESPQEIIDRVCRWSALLAYDLPDGNLYLTRLGTQKAASGVMQGENIQAADYQSSIDQRFSDYAGLSMSVTPLYEVGSSVEYGGTFLASAQDPEKRRHRKKIDIIESTMIANGVAQQYIDWEMNRRYGRSKALQVVVDSWRDKSGKLWEINTQIPISIPVFNITDMYWLLSEVTFTRDQRGTTAELVLMPPEAFTVEPYQFYQQVRELND
1499806..1500357                   PHAGE_Salmon_ST64B_NC_004313: putative base plate assembly protein; CCS40_07260; phage(gi23505463)     3.03e-21            CandidatusHamiltonelladefensaMALSIGRVTATSDSGPIQKLQVQTPLEVRGDTPRMSDFGFSSGLPVGTDVVITFLGGDRSSGVIIASNHQSHRQSGLKPGETVIYSQWGQLVKLTETGITIDADGQPVDVVNSTVVTITASEEVLAKTPVLKCTGDIIDHCESNTATLKQLREAYNDHDHQVKNVQGGNSTIDSAKPSKPVGG
1500361..1500777                   PHAGE_Escher_D108_NC_013594: hypothetical protein; CCS40_07265; phage(gi281199691)     3.15e-13            CandidatusHamiltonelladefensaMSDIKTVWKIDSGGWVSETGDLTSGDDLDTAVFISLFTDQQARADDTYDGDDRRGWWGDLGEDYCIGSRLWLIYRQRLSRDTAGAVINRKDGIKYTLNNSVTIGLDGTALTPVTAVLVSPLDDPAAGAHSVMHQWEPY
1500762..1501448                   PHAGE_Entero_SfV_NC_003444: tail protein; CCS40_07270; phage(gi19549009)             1.12e-18            CandidatusHamiltonelladefensaMGTVLTLDNSYSGVDSQVTLMNPATGGANVETDGPLRTRMLLAYQALPQGGSETDYVNWALAVSGVTRAWCVRRLMGVGTVGIYIMCDGDDQTNHGFPAGTDGLSHYEDWGSYAKATGDQLRVADAIYPNQTITALVYVASPIPKVIDFAITGIIEQEQDLTAAISTAINLVFFTRGDPAGEGIVTLSSINAAIASAPGTDGFLMTSPTQNITLGVGELPQLGTVTIT
1501445..1502041                   PHAGE_Entero_SfV_NC_003444: tail protein; CCS40_07275; phage(gi19548988)             3.17e-20            CandidatusHamiltonelladefensaMNSLFTTSDYQSALLAHLPRGRVWQTGPDNPLTKLSQALATSFQRVDASAMSLLTGGFPATALELLPEWEESLGLPDNCTIGETYTIERRRQAVVSRLVGKGSLSKQCYISLAKTRGDDITIDEFRQARAGFSVCGEAINGDDWPFVWRFNAQQTTYVQAKCSVSYCGEPLATWGNKILDCTQNQLAPPFTVLLFGYH
1502093..1502233                   phage tail protein; CCS40_07280                                                      N/A                 CandidatusHamiltonelladefensaMQKIGDITNTATPDGEFTNGNVAGGVSPTLLPAKWFNTIQRELCHVI
1502318..1502794                   PHAGE_Entero_186_NC_001317: tail fiber protein H; CCS40_07285; phage(gi9634074)      2.52e-12            CandidatusHamiltonelladefensaNGSDIPDKHQFIENLGLSETVDCAKNALDKRHGGEVQGQIQVNDTLRVSKNGKTATYQEDGNIDGECWGGLLNQWITTKITEAVQSRAPWEEVNRTFVRDIRLSSVQLMSVQTYDRQLPAGAVVTGFKTDGLWEIKSYAYYRFIQKNINGQWITVGQG
1502948..1503607                   PHAGE_Pseudo_phi3_NC_030940: protector from prophage-induced early lysis; CCS40_07290; phage(gi100001)     1.25e-14            CandidatusHamiltonelladefensaMQEVGVPQGSPLSPLYSNIYLNVIDQVWHKRGYPEKLGATLHRYCDDAILVCKKSAEPVLEAFAFLAERIGLTLNREKTRITKLSDGFDFIGFNFVKRKSPKSGKKVIYTFPAKHAQKAIRNSLKFLTSRRAPVSPKEYVELVKPVVMGWVNYFRHANASDAFRGLQRFINIRFRRYLIRRSRGRGFGWKKFPNGKLYAMGIVYIGSGMIEYPTKLAHD
1503785..1504562                   PHAGE_Pseudo_phi3_NC_030940: protector from prophage-induced early lysis; CCS40_07295; phage(gi100001)     1.00e-44            CandidatusHamiltonelladefensaMAKIGLRLSQEKTGIIHISEGFNFLGQNVRSFNGKFLITPAKKNLTNFLKKMRTTIKEERSSSAWKLITQFNPIMRGWVNYHRHVVAKKTFSKIDHLIWQVLWKWCLRRHPKKGKYWVRKKYFTVQGNNQWVFNGKSPEGKMFTLYKASSTPIKRHIKIRSEACAFDKEWEIYFEKRLENTWKTKAVGKESHITMDKTRTLFVLQPINYSRNWLEHTPSRKSERRRKTESTLTSQLPSTKTGCWLRSYSIVA
1504652..1505029                   PHAGE_Sodali_phiSG1_NC_007902: transposase; CCS40_07300; phage(gi89886005)           2.51e-41            CandidatusHamiltonelladefensaHIRRRDMLELAVELANLIEKWKYSKEQCKSLLYYIAQAGNTIDGEGFIRTLAEKAPTYREDFMTIAEQLEAKGEARGIQQGKQEGYQLGRQDANKELAQQLLSDGIDRTNVKRYTGLSDSELDQL
1505098..1505982                   PHAGE_Vibrio_K139_NC_003313: hypothetical protein; CCS40_07305; phage(gi17975108)     1.41e-45            CandidatusHamiltonelladefensaMEKFNRFNYFRNRDKHFANLISIIDGIICDGCVNSQEILYLDTWLLNANEISDNFCFKSIRRRISDVLADETIDSTELNEIKKDLIIIQKNLLELPYLHLNSIESDRHLFEGLCKGILSDKELNDSEIKYLKWFLSKNDNLKKNYPGKIIYDIVKYILQDSIVTEEEREFLRKTLISFTGCDIESGVVDGFATQLPIDIINKFEASGKTVCLTGEFIYGKRSVCEQEIIRQGANVIGNVTKKLDYLIVGTMSSKNWRYTSHGRKIEKAVHYRDEKGIPLKIINEEQWQDFSYSN
1506097..1506681                   hypothetical protein; CCS40_07310                                                    N/A                 CandidatusHamiltonelladefensaMKNIDDYLNKHLFWKVSFKDILVCIIFFILMFMLVKCKRSTDNIVTVPTDSDVISKPIHNWLKPFIIESYGLKDGVLIIKMKTRRVANEIDEEYSNATVHFTTFCYINYNDEITKRALNGEILSDLERDNFLIKKEIQDAPPIKKIIFITPSKNEGTIVSTINAGSNECKKIGKMDNDKKSKYMEKLIEVEKHY
complement(1506996..1507535)       hypothetical protein; CCS40_07315                                                    N/A                 CandidatusHamiltonelladefensaMEYNFEVAGIYYDNKDGTSRKDFIKKHLDIDDYTKINVSLIRHGGNKHDRNAIGVYISKSGFFGFNNLMIGFVPREDVKEISPMLKEGGEITSTEIYKVWLPSWSDKATPYVHITINTNWTENDVEEMYKRIKDERRKKRLEKRSMSSATDKNNVIIKKVINYILNIAILIAVYFLIFK
complement(1507616..1507933)       PHAGE_Entero_WPhi_NC_005056: C; CCS40_07320; phage(gi33438928)                       1.37e-23            CandidatusHamiltonelladefensaMSSEYGKKLKDIRHAEGLTQPEFSALTGISLGAIRNYETGQSGVGLNVIDKIVKHPKLNKYTMWLMSDKTAPNAGQIEPAFSLSGSEVSEKKDQRKSFHTKENDC
1508132..1508404                   PHAGE_Entero_WPhi_NC_005056: Cox; CCS40_07325; phage(gi33438929)                     4.64e-35            CandidatusHamiltonelladefensaMIKSDYTGQYPVEAVTIEKFAELIGKPETAVRKMITNNKLPVVELTDPEAAAARVGERWVVISEFNCIVREAYFNRPAKERGAWLKWLGL
1508715..1508912                   hypothetical protein; CCS40_07330                                                    N/A                 CandidatusHamiltonelladefensaMYESLCDGDVARWLTQKTAGCRYRAWKLALEKYPNLALLPFDLVNMAAQYEYVMRNEDISYKVAE
1508962..1509249                   hypothetical protein; CCS40_07335                                                    N/A                 CandidatusHamiltonelladefensaMDIQTENEILRAMKHLTIEEVEACIPEGEYLYERLTNPYIAQLFSGSKSGEKYDALLLALETTDSFNDALYDVMQTAAQILYLMRCQDADNEGPE
1509249..1509873                   PHAGE_Cellul_phi10:1_NC_021802: exonuclease, YqaJ (recombinase); CCS40_07340; phage(gi526178112)     6.92e-29            CandidatusHamiltonelladefensaMIWHDVAQNTEVWNELRSGKVTASQFGCVMANRKAFGEPAKRYALQIAFEIIKGKKSEFSFTNEHLQRGHEQEPMARMLYEIERNVDVTHGGFFDLGDYGDSPDGLVERDGVIEIKSVTWPPRAFCYFATWLFPVLQMATYRTSLYGELGFRELLSFPKQTVNHSSPAEKRLRRNKPALHKEKGFSQLNWNNSHHSTRIA
1509877..1510531                   PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; CCS40_07345; phage(gi658307733)     5.01e-34            CandidatusHamiltonelladefensaVSIATLILGDSGGKENQPACAILIHKKLCSNVTSHYRFNQRIGKEINQTKMAALLKKIIRKLNTIMKHSSREIFIIDDYQHVLVNELMSRSSEKSYDKFTDIGKHTWLILNTAGKLAENRRVYILAHTQTDDFGNIRMKTVGKMVDQMIIPESFFTIVLRATANNGNYLFSTQTNRYGLLQKSYGYVRKADKPEICHHLRLLWHSNEVA
1510540..1511106                   PHAGE_Salmon_HK620_NC_002730: hypothetical protein; CCS40_07350; phage(gi13559834)     6.49e-49            CandidatusHamiltonelladefensaINNITFTYNQEAALAAGQSAFINESGAYVVTILEAKSPAAAVLNQLNFRLRTDDGKKANYLNVYCMKKGGTTNQYGINTLNAIMGCAGVQQLTTKMINAHTHIAPELTNKRVGLVFQKTLKTKTNGLDTYSLDIILPFIAQTRQTLDEQINELPAQTIDKKLATLQDKDERKQASRGYQQYQSEYLG
complement(1511181..1511537)       hypothetical protein; CCS40_07355                                                    N/A                 CandidatusHamiltonelladefensaMGLDDLEHNMHDVIIVNDEYEPYGTTRDDVFIAMSTIKWLDTTGYIYTQNIFSDSASEVLLTEKTLSILKSVPSSLQKQEESLGVRIKNTMKSASKETMKTIGNEVLKNGIKHFIFNN
complement(1511956..1512276)       PHAGE_Sodali_phiSG1_NC_007902: hypothetical protein; CCS40_07360; phage(gi89885983)     5.10e-33            CandidatusHamiltonelladefensaMGQVAFDTQEFVETLENAGLPKEQARAISIAVRQSHEVADVATKTDIAEVKRDLEDMRKDLSAEIAEVRKDMENRFDKLGLQLTVRLGGMLILAVGALTAILKLVH
1512393..1513255                   PHAGE_Salmon_SPN3UB_NC_019545: putative antirepressor family protein; CCS40_07365; phage(gi423262399)     8.94e-35            CandidatusHamiltonelladefensaIPGSLTELITIDSNQLPIIEWKNIRVVTTETLAKGYGASMKNIQANLANHKSRFVEGIHYFKLEGNELQQFKRVPDNIGLVSKYTSQQILWTEKGAARMSKIVDTDEAWSFFEKMESAYFNQKSLPNDPTTLGLPNFLDPAESAIAWAEQHKKVQLLGVQVQQLETEIDCLQNLFQVGMSPSSFANSLMATLTRSTFFSNRVIFSTMQKRISTSLMSGEYRLMHAINIPSHPILQQRVLGNVSVTKLFCRKGLHGYISNISKVSYQRKTGTVSLPTKNMVRWHAG
1513383..1514090                   PHAGE_Entero_YYZ_2008_NC_011356: DNA-binding protein Roi; CCS40_07370; phage(gi209427760)     1.89e-45            CandidatusHamiltonelladefensaMNLIISTLQMISLEIAELVGSRHDKVKQSIERLANHGTIQLPPVRKVENKQSNSPNRFTEVYMFQGEQGKRDSIIVVAQLCPEFTARLVDRWQQLEQEKLLGFNPNDEIAVLENLLQEKKHNKELTHKIEEMKPDVAALERIARSDDAMCVTDAAKQLQLRPKDLFDFLSENKWIYRRLGSPWIAYQDKIQQGLIEHKVTTITHTNGINETKTQVRITPKGIAKLAKLSNLEIAA
1514257..1514610                   hypothetical protein; CCS40_07375                                                    N/A                 CandidatusHamiltonelladefensaMITSVAPLNMVGRSGGDASLAGFFVAGMLTLLRLATPFSIGMRGLKEPTKEATAMVATTPTRPEFIDNYWIIPEYATEPYGKVSFTRQDCRTFHSMFKYSRLIWAGRQPVRTCIGGN
1514612..1514905                   hypothetical protein; CCS40_07380                                                    N/A                 CandidatusHamiltonelladefensaMRIVDISPAQQEKIKLEISHESHSRLIRSREVAANIYKYLEAGEAEFRPIPWLPEILDYLCKDIDVILHEIDKWELRSSLSNAYLFKENNLQEPCHD
1514898..1515416                   PHAGE_Salmon_BTP1_NC_042346: sliding clamp DNA polymerase; CCS40_07385; phage(gi100042)     2.06e-37            CandidatusHamiltonelladefensaMTNVTYADFEAQKEENKINVIVLEEGYTRISNELLEGILTAGLTQHQLLVVMAIIRKTYGYNKKIDWVSNWQISELTGLLPHKCSAAKSALLKRKILISSGRFVGINQCLSEWKDKTCVNEMLPESGNQPNDYPNEVQLFQLSHDKLPESGNNIKSYPNQANTKDKLQKTIY
1515524..1515805                   PHAGE_Entero_mEpX1_NC_019709: DNA replication protein O; CCS40_07390; phage(gi428781918)     3.56e-22            CandidatusHamiltonelladefensaMQYRKEINKPIKSQQTVIQAIKLPGQCRDNGHQPEAIINASIANGWQGLFEPQQPARTQQPKAHFVADSFADKDYGEPQLPDWARECLSREGL
1516042..1517016                   transposase; CCS40_07395                                                             N/A                 CandidatusHamiltonelladefensaMGGHKCTKDLYRAFLQASSMRYSGLALSEVSPLPLSHDSISRWLKSRCFRPKELWELVAPCVDKARPCLLIADDTVLAKTRSKKIEGVHYQYSGNQHDVIAGIGLVNLLWYDLKTTESVPVDYRIYDKDTDGKTKNTHFCEMLNLAKDRGMTPEAVVMDAWYSSLDNLKTLRSHGWVWVTTLRKNRIVNCSSRLESLDIPEEGLLVHLRGYGWVTVFKFVAQHGRIDYVASNMIEPTRDKVTAVIEARWSVEVYHREVKQTCGIERCQARTGRAQRNHIFLAISAWFEQYKRRVSQKMSFYQQKWQVIKTAISDYMRFLLSLPH
1517035..1517253                   PHAGE_Entero_mEpX1_NC_019709: putative replication protein DnaC; CCS40_07400; phage(gi428781919)     2.04e-16            CandidatusHamiltonelladefensaTKTECPACLSEKLSELQQAEAEQEKYRKRSKIKTLMDNLNLPERFFDVTLDNYESVNPDAARCLKLCNDYATH
complement(1517304..1518410)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CCS40_07405; phage(gi41057343)     6.88e-62            CandidatusHamiltonelladefensaMDKKHKLPYSPEFKLEGAQVTKQGYRGIEGAKAMGVSIIALRDGVRRSMSEKRGQTISQGKTMTADQQRIQELEARLRKVEREKDILKKASSLLMSEFLNTSRERNLRRAMQQADVKCLGYIEAVINIGRGLIESSLNRSDKLRYVRSKNDVCHGIRTGYSAKSLSGNESHASVGTGQPSATDSSIKGETGTSGYSRVSASVFCGCPSSDVTYLWAGNRWTCLAVLIDLFARKRTGWALSSSPDSEFTCKALWMACESRGRPNGVRFHSAQGCHDTSLTFRQPLWRYRMTQSLSRKGHCWDNSPMERLFRSLKTEWVPKAGYPTQQEARRDLVDDLIGYYSQTRPHQYNGGTPNEPQRLY

#### region 5 ####
complement(1520431..1520660)       PROPHAGE_Shewan_MR-1: ISSod13, transposase; CCS40_07415; phage(gi24375047)           9.76e-13            CandidatusHamiltonelladefensaMNQTAKIIKPKLGLLELAKQLGNVSACKVMGYSRDSYYRFKKLYEQGGETALVEISRKNLSKKIGLNLIQNKRFCCG
complement(1520731..1521459)       hypothetical protein; CCS40_07420                                                    N/A                 CandidatusHamiltonelladefensaMPLSFSRTIATKNIVNSGSLLPYNTVSAADISSNLFKEIINVNNSKHTLSNETLKQILIDSFDPAPFINSSNLFNDFEILSIRIYTGPAYKKLNEDLRNNNQLDKKNSALNEGLNSAFKKIPINQKHIKTYRISDFNDFKSEGQTSQDAGYLSTSLDAELIKDIIYIPGGTASIIFGKSGICIDDFAVLSDEREVLYNKDTEFNILFKVKDENGTTKRVLEETILPKNTGKEERLIEALILP
1521685..1522186                   PHAGE_Salisa_1_NC_017983: hypothetical protein; CCS40_07425; phage(gi388570712)      7.80e-07            CandidatusHamiltonelladefensaMRLFAYARVSTRQQSLDIQIKALKSEGVKDTRIFTDKMTGSHAARDGLQLSTAQGRRGRCCSGKTRIRKRHRYDRVNQRIPSGRGDSIAGWHEHRRGDGQNGGYHSFCCRTSRAPENSGKNERTNRSESQRRSIWSAVDKPSKSESALSKGHWGHSVISVA
1522446..1522670                   ISNCY family transposase; CCS40_07430                                                N/A                 CandidatusHamiltonelladefensaMTQKFTPTPMMRFFASFSMKKRRLKTSSRYGFLMRKPCVISRRWMKVESGSFVDEDMKAYQNDILYSLKTKKGK
1523110..1523301                   hypothetical protein; CCS40_07435                                                    N/A                 CandidatusHamiltonelladefensaMARSEQGKSQEMLIIMRVKESGESEGSIVIIEIRGANKINILLRESGQTSTGSFLTRIFDYFE
1523312..1525010                   PHAGE_Pseudo_phi3_NC_030940: protector from prophage-induced early lysis; CCS40_07440; phage(gi100001)     1.44e-39            CandidatusHamiltonelladefensaMTGAVIPGAPSHLSGDWTNIVWSQCYREVKKLQIRIVKAWQQKRWGKVNALQRLLTHSYSAKALAVRRVTENQGKNTPGVDGVTWPTPSSKTQAIETLKLRSYRPLPLKRVYIPKKKDQRRALGIPGMKNRAMQVLHLLSLEPIAEALILILMAFAAGVRQRMLSNVTLYLSKIELNGYLNVIFVAALMIFHMIGYCKMFRTKQSGNGSKRVILRRGGSMLLPRVRRKEVLFLLRWPIGVTRYKHYHSTSKTDGKKTMGHPSQSHSVCRFYYYRCFRSSVKKSQTCGRDLPSSRITVSSGENHDAYYGRLFSRAEYSKTGSTSDVSDTIKRKYSCLSKQNTTHQTKYRDASKFNRFTESSYSRMGLSSTRVCKKGVPGSDMESIMDMVLSKASQRQTLDKSIFFTKKYPLDIFSEIDPMARQSGRYLPEKSKRYSYPKTHQNHQPDQSLSCLGKAKTSEKDAVHAHRQKEMRASMASAKKTMSYMSTNHGGVWMAYSSCYSPRQRRPHAQFDITSSSLSSPITPGSLCHTGFYKEALA
complement(1525174..1525374)       PHAGE_Salmon_SJ46_NC_031129: dihydrofolate reductase; CCS40_07445; phage(gi100060)     3.80e-13            CandidatusHamiltonelladefensaYIERAIDSLKRKGIEINEQLVSHLSPLGWEHINLSGDYVWGNNVKLGSGKYRALRAVDTTLYKKQS
1525433..1525798                   PHAGE_Paenib_Tripp_NC_028930: transposase; CCS40_07450; phage(gi971756982)           1.39e-17            CandidatusHamiltonelladefensaMKNRHYPIKECDFIKIIEPHIIKYYKRPGRPASISHYQFFSAVLYVLRTGIPWRDVPDLYGHWHTIYMRFKRWSENGLFWNLLYRLQQKKKIKMDCTWVDSTTVAIHRHGSGSLKKRDLNR
1525894..1526220                   PHAGE_Paenib_Tripp_NC_028930: transposase; CCS40_07455; phage(gi971756981)           4.14e-07            CandidatusHamiltonelladefensaMKAFTELWIKGNGRKVIYIIADKGVDFFDVRKLIRDSGKSPVIPRRKGAVCTGIQPNDKEKYKTRSAIERFFFSIKEQKRLALGFDKLDITFFSFFAIACLKVFNLLC
complement(1526539..1526883)       PHAGE_Entero_mEp235_NC_019708: terminase small subunit; CCS40_07460; phage(gi428781811)     1.82e-42            CandidatusHamiltonelladefensaMPGPPKAPSQLCLVRGNPSKRPLNRNGPNPEKWVPSTPKHFSKQEKYWFERIAEDLNASDILTHIDGMALELLVGVYVEWRQHRDVIKKEGHLYRTESKDGNVMIRPHPQVAMMA
1527123..1527380                   type II toxin-antitoxin system antitoxin, RelB/DinJ family; CCS40_07465              N/A                 CandidatusHamiltonelladefensaMANHLVQTRIDAAIKEEAAAVLGAIGLTVSDAVRLMLTRTAREKALPFEPLVPNETTIAAMREARAKKLETVTLDSIQAALNADN
1527367..1527648                   type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family; CCS40_07470     N/A                 CandidatusHamiltonelladefensaMRIIKQTSQFKRDLKREKTGRYRATLNIELITVLSNLAQDQQLASRYFDHPLKGKLEGFRDCHIKPDLVLIYEKPDDDTLNLIRLGSHSELAL
1527685..1528008                   PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; CCS40_07475; phage(gi100019)     8.57e-08            CandidatusHamiltonelladefensaMRDRAHDTAMAEVFRNDPNYAIELLNSILEDGEQGELLIVLRQMAEALGGVRKVAKSAELNPNQLYRTLSESGNPEVRSLTAILRAMGLRLAIQPIHTTSTVTQRII
complement(1528010..1528354)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; CCS40_07480; phage(gi18249898)     2.30e-49            CandidatusHamiltonelladefensaMPNQIPRPFRKQGCGGITTARSGYCETHRNEGWVQHQRGRTRQQQGYGRAWEILRAKILKRDNYLCQTCLRQGIATEAKAVDHIKAKAFGGKDDETNLQSICYACHRAKTAKEH
complement(1528335..1528805)       PHAGE_Salmon_SEN34_NC_028699: outer membrane lytic protein Rz; CCS40_07485; phage(gi966201480)     2.77e-30            CandidatusHamiltonelladefensaMTWKILLVIALLLTSMSGVTLYYRTLYYDAEKARKIAVSDREKQQVAFEQLSQQIQTISALDDRHTKELADVQAKNHHLRRKLDRGGRVLVKGHCPVSTPRPSSLGHAGTIELSSIAGRNVLDIRAGIISDQAKIKYLQDYIRKVVLSNQHAKPNS
complement(1528871..1529170)       PHAGE_Escher_P13374_NC_018846: antirepressor; CCS40_07490; phage(gi410491647)        6.66e-46            CandidatusHamiltonelladefensaMNNMIVTATFYGTELYVVEHNGEPHVPMKPIVEGMGMAWQAQLEKLKQRFKSTVTEIVIVASDGKERKMACLPLRKLAGWLRTIYPNKVKSEIRDKVVQ
complement(1529336..1529833)       PHAGE_Bacter_APSE_2_NC_011551: lysozyme; CCS40_07495; phage(gi212499717)             1.36e-69            CandidatusHamiltonelladefensaMNNQLKKRLLVATAGGVLALAAVLVQWHEGKRYKPYRDGGGVLTVCHGHTGKDVTPEEIYSEEECSELMRRDLQIARSVVEHYVTFPLSDLQKAALTSFVYNIGSGAFERSTLLKKLNVGDLSGACDEMRRWKYDEGKVSKGLINRRAIERELCLKPDLLTSPTQ
complement(1529830..1530018)       PHAGE_Bacter_APSE_2_NC_011551: phage 21-like group II holin; CCS40_07500; phage(gi212499716)     4.72e-11            CandidatusHamiltonelladefensaMNNIEKYTTGTAYGASATTFLCGALSLSEWALVTGIICSLLTVGLNWYYRHKEYRFRTRNPS
complement(1530089..1531129)       PHAGE_Entero_phiP27_NC_003356: putative DNA methylase; CCS40_07505; phage(gi18249888)     4.06e-129           CandidatusHamiltonelladefensaMTFSNQPILVNGDALPYVKTLPDDSIDLILTDPPYYRVKSCAWDRQWKTTGQYLAWLNDYLVEFQRILKPNGSLYLFCSAELAADTEIMPRNHMRMLNHIIWAKPYGRGTGCSKEWLRSYFPGTERILFAEQYGAEGTAKNKDGYKCAELKSEVFASLIDYFITAKNQLNITGKEIEQYMGSYMHRHWFSYSQWQLPNKTQYERLQEFFSQKAAEKKSASSLSKNHHPLSFTHDELKRQYENLRRPFSVTKDVPYTDVWNFPPVLYYPGKHPCEKPAALLEHIINASSKPKHTVADFFMGSGSTVKAAIQSGRQAIGVELETDRFLQTKKEIENLISQINYQGMIF
complement(1531265..1531372)       PHAGE_Endosy_APSE_1_NC_000935: P13; CCS40_07510; phage(gi9633560)                    8.82e-10            CandidatusHamiltonelladefensaMNISPEGIEQIKAFESLRLKAYLCPGSRWTIGYGHT
complement(1531369..1531713)       PHAGE_Entero_HK022_NC_002166: holin; CCS40_07515; phage(gi9634153)                   2.84e-07            CandidatusHamiltonelladefensaMTMPEKEPGFWVALLAWIRGHQADFGYASLAALFSLLRNAWGKHAWSRRLLDALSCSTLAFFSQPLLMMVEGLFHGTLPASAPQVLAIYIGYVGTDYLRARLQSWTERKNGESR
complement(1531880..1532224)       PHAGE_Entero_phiP27_NC_003356: putative antitermination protein Q; CCS40_07520; phage(gi18249885)     3.42e-06            CandidatusHamiltonelladefensaMKEIRYRLTAWGNWAGTRVGTEYPVSSWPVPMASSDIRPMLPDNEAEKVDRAVARLKHFDSLGYEIVVAYYRGKASCRAIGRHLGRKHDYVSALLSRSEAYIAGMMATFVETAG
complement(1532221..1532601)       PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; CCS40_07525; phage(gi148609431)     2.68e-22            CandidatusHamiltonelladefensaMRIELPFPPSVNHYWVRTARRVYLSEAAKRFSRLTAAAVAEVQRQYGHRSFLGDVSVALTLYLPDKRVRDVDNYPKGVLDALTKAGIWSDDAQVRVMTVKKFDADNKIKNGKCVVVIDDYIEEETV
complement(1532604..1532813)       PHAGE_Edward_GF_2_NC_026611: hypothetical protein; CCS40_07530; phage(gi764162319)     5.48e-16            CandidatusHamiltonelladefensaMSISLNTPFRYTGISQDEADFLMHHYQQRGYRMKKYLNEDVRLWDVVVSLPETARFPKTPLSMLNPLWR
1533096..1533878                   hypothetical protein; CCS40_07535                                                    N/A                 CandidatusHamiltonelladefensaMLKFNLKSKNYSNSQIASHDVKLIYTKNPQINKSLFSRFGRTITNICNVFKKPTVSQKSNKFQMETISEKDFAKESCISFPKNELEKIDKNSLGYKEITYHGDYENKITGEKYKDAVFFYKVNDENKYERIHYRPIKQLDSNQNLKGGSKYVSRIDGSHVFLELHSPEKSPPFNTDCNNHDDLVGTSTIKAGIAVDVDKMITPYGGSNLIDCVKNNNFMHPAYFQNALGDLTTLHKRDTFLADIKMNNCGFNGKNVTFLM
1533950..1534312                   hypothetical protein; CCS40_07540                                                    N/A                 CandidatusHamiltonelladefensaMWDAVKLNSADEIGEKRHYLKTADEYAFLLTIIYSTVSNILTKEDWSGIQKNDWGKSDKPGAMNDTNKSMFLNWIRNYVQPAFHSHIENMLRDPYEYAKTSTTQPYLSEMLDVQTEVTRF
complement(1534344..1534667)       PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: hypothetical protein; CCS40_07545; phage(gi937533315)     8.97e-05            CandidatusHamiltonelladefensaMTDLLGPALTCKLGQSMGGARVYIPKKIQANDPLALLLGGQDAERLCAYYAGTVLDLPSKYFFRAVRNHHIRQDYHSGTLTGSRADHLALKYGLSRRQVLNVIRQKK
complement(1534702..1535559)       PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; CCS40_07550; phage(gi18249882)     6.64e-56            CandidatusHamiltonelladefensaMNYSAAMTTVRQKLADLNAPPKRLKNTVYEERDALCDRHGIFKQRCRRIALYGKEIETKTECPSCLTEKLSQLQQAEAEQKKRRKHHKIKMLMDDLHLPERFAGVTLDNYEPVTLDAARCLKLCNAYATHWPERLKRGGGLVMCGKPGTGKNHLALSIAKHVINEHQSSALLTTVLRIARDFKSTWNKNAECSEAEVIKRYTQPDLLIIDEVGVQFGSEAEKMILFEVFNTRYESMKPTILISNLALNELAGFIGERVMDRMQEGGVAHWCSPGTSYRQQKSQCV
complement(1535556..1536461)       PHAGE_Cronob_phiES15_NC_018454: putative replication protein O; CCS40_07555; phage(gi401817576)     9.09e-59            CandidatusHamiltonelladefensaMTNVSYACFKSKDEEQRVLMTRSDTGFTKWDNELKEALLRAPLTFRQYKVFDAIHRLTIGWNKQCAHIENTRIAKMTAIHHTHVSKVRKELENMNMIFKHNNEVSINQNYHDWSFNKSLAEPAHKIKPNQLTITELANGCQSYTLAETANMSLAKLANESLAESAKHKRKERQERHILKYKPPQTPPLAKSKSFDPSSVELPDWLPKPIWDAWVQYRKEISKPIKSQMTVTQAIKRLGQCRNNGHQPEEIINTSIANGWQGLFEPQKAARTQQAKLHSVTDGFADKDHGITQIPDWARACL
complement(1536608..1537162)       hypothetical protein; CCS40_07560                                                    N/A                 CandidatusHamiltonelladefensaMNNLAREVSSSMETTFVLDVIKNPLPVWANFAYSHHALVNPSDGFRSLSIHKATVDAVDSVFFYVVDNAHQYSMVALSGQSSDWLVSLCTSTANLDIVTAHYEFRSSSGDFLNKHKEIASMATIPSHTHPEFIDTYWIIPEYATEPYGKVSFTRQDCRTFHSIFKYSRLIWCGRKPMHVVMEEN
complement(1537356..1537870)       hypothetical protein; CCS40_07565                                                    N/A                 CandidatusHamiltonelladefensaMEKRELIHEMLKKIEGDDLPPLIAATSNLTIGYMKAKDVDFLAWMSCWPYRAANQVWQSTLLSAQTPWWCRCLNQTPWITWSCITWACEATKAVLWMSFWDRFRTTAVLIEKRKKRLWPRIVNIWRAGILKRPHYGCMEGEKVTTIKHIIQDGWKVKPATYQDAG
complement(1537941..1538162)       PHAGE_Escher_HK639_NC_016158: cro; CCS40_07570; phage(gi356870651)                   2.56e-25            CandidatusHamiltonelladefensaMNKVIKKAVKILGSQTKLANACGVTQSAVQKWLHCKTKVAPTNVGSLIKATNGAFQAYEIRPDLPDLFPHPER
1538270..1538962                   PHAGE_Escher_PA28_NC_041935: hypothetical protein; CCS40_07575; phage(gi100028)      9.39e-32            CandidatusHamiltonelladefensaMKMTFAERVKYAMNLEGFTQASLAKKVELSQSAIQKITSGKSLRSKKLLDISRALKVRPEWLWDGIEPMKNKWSQSNAIIQKIELDDSHQFICENEPQFPLYSRIERLLIPKNKEKEDDFKMIRLPMDIAKKTNTNATHWVGILAPDTSMRPTIQEGAIVAIDESMIEIKNGKIYAISIGNICMLRILYALPNKKVKIRSLNSDEYPDESLSRDEVIILGKVFYTATMID
complement(1539563..1539958)       PHAGE_Endosy_APSE_1_NC_000935: hypothetical protein; CCS40_07580; phage(gi9633594)     4.37e-23            CandidatusHamiltonelladefensaMNYLASDTFQILEDLEESGLDKKQAKAIFQVIRQSHEAKDVATKADIADVKRDIADVRKDMDTRFEKVDAQFADIRKDMDTRFEKVDVQFADIRKDMDNKLEKLGLSLTIKMGGMIGFLVVSIGLMLKYLR
1540114..1540434                   hypothetical protein; CCS40_07585                                                    N/A                 CandidatusHamiltonelladefensaMIAFPFHQAGLSRLLFTGASYEKTSTSAWTEDKAPLSPLDCLVSSLIAYPKTKGDTMKFCILGPFLLIDLAEQRHCFPNTESGYREMARAFIATRLKGDPAWAQSA
1540416..1541099                   PHAGE_Salmon_HK620_NC_002730: hypothetical protein; CCS40_07590; phage(gi13559835)     7.03e-98            CandidatusHamiltonelladefensaMGTVSLILGESGTGKTASLRHLNPATCLLIQSIQKPLPFPAKAWRPWAAKDPHSSIYVSDLWQPVKMALSRAYSYGKRIAVVDDFQYIMANEFMRRGEEKSYDKFTEIAHHTWDILHHTIHHTPPDLRMYFLSHSEDTASGKIKMKTVGKLLDEKITLEGMFTTVLRTCVKDGRYLLSTQNNGFDTVKSPMGLFDSAEIDNDLSFVDAALCDYYQLTPSQHTTGAIA
1541096..1541656                   PHAGE_Salmon_HK620_NC_002730: hypothetical protein; CCS40_07595; phage(gi13559834)     6.47e-48            CandidatusHamiltonelladefensaMTLNPFIYNPQQALAAGQSGFITDSGAYVVTITDARFRVQPSGAKSMELSIETEEGRKAQYLHLYHEKKDGTANPYGLHLIHALMGCMGVRQLHPPTHPGGPVSEFIGKKVGLMLQKTLKTRADGKETYRLDIILPFFAQTRQTLREKLDGQTARDVDNRLASLKDKDERTLLPLHTPSFNDAIPF
1541674..1542270                   PHAGE_Paraco_Shpa_NC_041868: RegA; CCS40_07600; phage(gi100039)                      4.37e-66            CandidatusHamiltonelladefensaMQQRTPDWLQARCGKVTASRLGDLMAKTRAGVTASRARYQAELICERLTGQREEGFVTAAMRRGTELEPEARDLYRLYSGNEVKEVGLIPHPTLPDFAASPDGLVNPEGLLEIKCPNAWTHLELIKTGQIKTPWRLQMQAQMMCTARAWCDFVSYDPRFPPELAYFQTRVSFDPLLNEDIEQAVHTFLNEIEEEIECI
1542453..1542818                   PHAGE_Paenib_Tripp_NC_028930: transposase; CCS40_07605; phage(gi971756982)           1.39e-17            CandidatusHamiltonelladefensaMKNRHYPIKECDFIKIIEPHIIKYYKRPGRPASISHYQFFSAVLYVLRTGIPWRDVPDLYGHWHTIYMRFKRWSENGLFWNLLYRLQQKKKIKMDCTWVDSTTVAIHRHGSGSLKKRDLNR
1542914..1543240                   PHAGE_Paenib_Tripp_NC_028930: transposase; CCS40_07610; phage(gi971756981)           4.14e-07            CandidatusHamiltonelladefensaMKAFTELWIKGNGRKVIYIIADKGVDFFDVRKLIRDSGKSPVIPRRKGAVCTGIQPNDKEKYKTRSAIERFFFSIKEQKRLALGFDKLDITFFSFFAIACLKVFNLLC

#### region 6 ####
1798620..1798631                   attL                                                                                 N/A                 TTTTATAATTAA
1807927..1807938                   attL                                                                                 N/A                 TTTATAAAAAAT
complement(1808190..1809362)       PHAGE_Bacter_APSE_2_NC_011551: integrase; CCS40_08970; phage(gi212499734)            0.0                 CandidatusHamiltonelladefensaMSIFKRGKIWYGSYTTPCGKRIKESLGTEDKKQAQELHDKRKAELWRIAKLDDFPNVTFDESCLRWIEEKANKKSLDDDKGRLGFWLLYFSGTRLKDMTEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLALLKSMMRSAERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLINECPEPLRSTVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACRTLTRQLGNHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAWRAALKRAGIENFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESVEMVRRYAHLAPNHLTEHAKQIDGVFDRFNRKISNHVPNLSHLKILKS
complement(1809813..1811195)       PHAGE_Bacter_APSE_2_NC_011551: DEAD box helicase; CCS40_08975; phage(gi212499736)     0.0                 CandidatusHamiltonelladefensaMKTFTPRPYQHLIINHLLDIKRSNVWAGMGMGKTAATLTALENLYLSGSETKPTLVLAPLRVAQSTWPDEALKWSHLRNIEVQPIIGSAKARIAALKNTHASVFTVNYDNLVWLVDILGDTWPFGTIIADESTRLKSFRLRKGGKRTAALAKIAHKSVHRWVNLTGTPSPNGLMDLWGQAWFVDQGERLGRTYNVFTSRWFKRIQLPGQQWSRFEPLGFAHLQIPLALSDVTLSLDAADWFDIDEPIHNVINVELPAKARAHYHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALESIVNESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHGLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVMERRNSKRAIQDLLLEAMKRK
complement(1811215..1811963)       PHAGE_Bacter_APSE_2_NC_011551: DNA binding protein Roi; CCS40_08980; phage(gi212499737)     8.90e-18            CandidatusHamiltonelladefensaMQNLITFQSLTMSSIEIAELVNKRHDNVKRTIETLAKSEIILNFLRLRKLRINNQIAQIALLKFLFLKENKVNVTALLLLLNFALNLRLAWLIVGKNWNRNPPLHYPLTTLKRLKPWLSQKRKRLLLLTREMKLSVPNPILVAKGKPLHSNVIQPTSALLIVRYESVKKWPPDLAQVKNGLLNRQCGERREKCLAGKCMPGSTNTIFMTHSPRDTQPVSILTKTAVKFIRGRRGLKYTVSISLNYFAA
complement(1812029..1812799)       PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_08985; phage(gi212499738)     0.0                 CandidatusHamiltonelladefensaMTTLIFRNTVLETIFHNREIWFTSAELARALEYTETDAVTKIFNRNKDEFSECMTTTVNLGVVRKTGTVRMPVRIFSLRGAHLIAMFARTHIAKEFRKWVLDILDKQAVNQTSFTPQPQSKAVERFSHSDTRNLTHLVWCMTNGFRFERSWSNAVWLALREVTGTPSPERFQVAHIPLMADECRRIYYLTETLRQIINEAEKQTIKRLLRKRENIDIVLAEIKQLFEHFQHQQIGIITARTDQWYEGELTHFLERH
complement(1813104..1813907)       PHAGE_Bacter_APSE_2_NC_011551: conserved hypothetical protein G; CCS40_08990; phage(gi212499739)     0.0                 CandidatusHamiltonelladefensaMSKLVVIENTIVRQDAFGLYCLNDLHRAAVAQGKATESQRPSVFLRSEGISAFVQKVSEASQSASVNIIKGGLESGSWAVEIIAIRYAAWIDPYFEVQVYERFRDSVKSNNGVLVEKVQAGLAMIAFYKQELRIAPSAMLGAMKKLQSSLGIPDILPDYAVDTPEGSLTGSSEVTHSFTELLQLHGKPYSPPSGFKRLQLLGIVERKSRPSNKHPDKEKLFWSLTEKGLQFGKNLTDPNHPRQTQPHFYDGQFPRLLGVMMNGIAAA
1814015..1814302                   PHAGE_Sodali_phiSG1_NC_007902: hypothetical protein; CCS40_08995; phage(gi89885983)     3.37e-32            CandidatusHamiltonelladefensaMGQVAFDTKEFVETLENAGLPKEQAKAISIAVRKSHEVADVATKRDLEDVRKDLSSEITLVRKDVEALTNSLLIKLSGVMLAIVGAAATIVTLIIK
complement(1814319..1814603)       PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09000; phage(gi212499740)     4.06e-62            CandidatusHamiltonelladefensaMRLIREDSIEKHLVSEVQKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQLREHARLFALGHQVIVLDSQDLSSILPPYEL
complement(1814594..1814811)       hypothetical protein; CCS40_09005                                                    N/A                 CandidatusHamiltonelladefensaMAFRKNDSPLYFKAAQDFTLNNPVNTMKPRAHGHRQIGWRAIAIIVSGVNTAPIFACKLNGKTKGCIHAVAA
complement(1814838..1816901)       PHAGE_Bacter_APSE_2_NC_011551: DNA polymerase; CCS40_09010; phage(gi212499741)       0.0                 CandidatusHamiltonelladefensaMQNLLFCDLETYSDIPINCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDKAKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWNMNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVKREAMRWYQKSVETDKTYGLSEKIFVTCDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCRKLSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWERLKTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWAWDLPLSANGFETYRYRKE
complement(1816914..1817246)       PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein I; CCS40_09015; phage(gi212499742)     1.37e-75            CandidatusHamiltonelladefensaMQNLMNAQNIILSGGETIDSQQLLVMVNETRKDTGLRRNGLSDAKCRQLVMAWNIPYKKVPHVVPGGPITQMSVVDEEAFKNALDKMMLRAEKCGSQWYQPKMGRFSVTA
1817337..1817909                   PHAGE_Endosy_APSE_1_NC_000935: hypothetical protein; CCS40_09020; phage(gi9633594)     1.28e-126           CandidatusHamiltonelladefensaMGQVAFDALQASEELESAGISREKARAISLVVRKSHDVANVATKADIAEVKRDIADVRKDLSAEIADVRKDLSAEIADVRKDLSAEIADVRKDLSAEIADVRKDLSAEIADVRKDMAIRFEKTDAQIADVRKDMVNLFDKTDAQISLVRKDLQLEMSGIRAEQKLIRWMLGAGILGILSLVVKAFLMPAL
complement(1817904..1818173)       PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09025; phage(gi212499743)     9.88e-56            CandidatusHamiltonelladefensaMKLDNPHRYIGETIVLTNPSNNSQYLLNLEQQGYADEETKTLINMIRLLVEENKYLRKENNLLAKRHRGVGGLCRTQTRKQWANSPISL
complement(1818242..1818796)       PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09030; phage(gi212499744)     2.30e-133           CandidatusHamiltonelladefensaMKIKLNNVRLAFPELFEPTQVSGQGAFKYRANFLIPKSRTDLIEEIKAGIKHVIGEKWGNKDIEKIYNSICNNPNRFCLRDGDSKEYDGYAGNLYLSASNKSRPLVIDRNTSPLTAQDGRPYSGCYVNATVEFYGYDNNGKGVSASLRGVQFFRDGDAFTGGGVASVEEFDDLSMAAEEELLAS
complement(1818812..1820130)       hypothetical protein; CCS40_09035                                                    N/A                 CandidatusHamiltonelladefensaMINQRVAMAEHAKLAPPQRIDGLNALAVPHKPPYPIKHRRLLKKAARRMRRKVSKGAKTRLVTGVDKHTVLMRKSISARIRCKPTHPKWMKRLNTSKPISIPSGNWRTGKCYRLKNGWTFQRSLAIIRLAPQMQLSVVMNYKFMTNMVKALKWMPRTMSSSCFMRWALYNSLTLFMILTRFGFLSISPDLTICLNGQYQLRTKTLVIWPDGRKKPWRQALPSATGLMPYRIVPFHQASSNACFVKRRADCVLHRRNSSIMKSKAILSIPNRWHHNAMHQNALRYPLNKWQNSTRMSIRVFVKPCEIGSPRHYIRGNRYLALNWLPANRVIAPGVMNVKPKPCKAPNLNRSKSTTRKLSAHPRLRNSLKKTNPIDGQNWKRLSSEQTLNPLSHRNRTQDLPLLLPPTTLTMPKRHSLINPFAA
complement(1820102..1821025)       PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09040; phage(gi212499746)     0.0                 CandidatusHamiltonelladefensaMLTANTPLLARLAENHTQMLMAHNQLTEAHTMLISQLVVQFEHDPHEPTEANKPKPFAQDVKPQPVAPSVIVEPKVVIEPAPVVEAHTKADDKPAPVVAEKKGKVAKAETKPAKAVKPMVEDPKVAIEPEPVDIESLDLRHVVSLSVLFGDKAVKPDHTQVAKAKATFAAEKADGVTGQIDALYCALNGISNIKTLSKTSSFDLCLKMLANWDNLFGITERREFALSLLHELPTPTEVKPIDFNALRSEASARITQLVKGGYRNEALDILASFNAKKLGDVTDDNLARFIEKAQSVLSDDKSEGSDG
complement(1821593..1822375)       PHAGE_Bacter_APSE_2_NC_011551: cI; CCS40_09045; phage(gi212499706)                   3.14e-173           CandidatusHamiltonelladefensaMRKIYLNLNIICVKVYFEFYIGLKGSNIMGMMTAKLNKNIKKLMAEKGVKSVAELSRRIGMPQPTLHRMLSGEVKSPRLKIIQKIADFFRVEANELLYKDLITSNISIENKTKAYERVEVKAIPFNFCKVPVLGTTQLGGGGYWNSKESSAGHDYGYIIWPTEDRDAFALRCQGESMMPRIQHGEFVVMEPNHKYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAASTIEKIIYVAGIAKDSLYYRE
1822387..1822671                   PHAGE_Bacter_APSE_2_NC_011551: putative Cro-like protein; CCS40_09050; phage(gi212499707)     9.60e-62            CandidatusHamiltonelladefensaMRIGIFKHLKEMNNWRKTVYKKSPIEIVQALLAQGLTQSEIEANTGIKQPSISRILTGKNKDPRISTMVALEKLYLDLATNSFRTSRLNKSKAK
1822675..1824933                   PHAGE_Bacter_APSE_2_NC_011551: predicted P-loop ATPase; CCS40_09055; phage(gi212499708)     0.0                 CandidatusHamiltonelladefensaMQISYSVGRSVNDKRPRPAVADSFAEYQRAIKKLTKHINISPTDPKAIFDKKKKALNYIWGAMKNAKKGRNALNAGKRSVLWLDMDGCTLAAWDMLTGILRFYRCFAYTTASHEHPVAQGEQRWRIGFLLSRDVTASEYKQLGPRIEQELIDCFEWLSDLAIKWDSSVYEPSHMIFAPHEGAKYESFEGTVIDVDTLLASDNTPVIEHADVPKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMWLDWSSAAAKGDIEAAEAKWAELRADRTGYQAIFSLAQKAGWVNPGAERLKTAVARVDEFDDLTDPTENSKWPMFKRNKTSGQIEATIDNAAKAVMCADFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVLLAAVENPFDSAMEWLKSLEWDGIPRIETFYHTHLGTEDTAYTRAVSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGVASLSPDPTFFTEISFAEKDDDLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQFPRRSLSIGTTNEDEFLGDKTGNRRWLPVEVGKMDVEGIKKDVIQLWAEAREVFNQTGIQFEEAEQLANQVHEKYFIKDAWQEIIERWLDEPDLMTGQKPRARQFLRSADILRAALNLEPKNISRREQMRMGHVLQNCNFKQVLRRVNGKVCRVWERCNDLQQPVTT
1825037..1825267                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09060; phage(gi212499709)     4.30e-33            CandidatusHamiltonelladefensaMHIKHYIEGYRYLIYIYIYIYLIEKRLLRLLRLLHSFKINKLRRNNLVLIGCCRLLRLRTVKIFPFITGAKKHEQRH
1825397..1825843                   PHAGE_Bacter_APSE_2_NC_011551: Q protein; CCS40_09065; phage(gi212499710)            2.05e-97            CandidatusHamiltonelladefensaMRRDIQQVLERWGTWARDNNTGIDWSPIAAGFKGLLPLRPSMRPSCSDEDGRSIDNCVSQLQKVRQPEELSLIIAYYVKGYSKRAIARRRRVDERLIRAKLLIAEGFIDGCLSLLAVRLDMDPEVKMYSPQKSEKRISAVRKKFVNMI
1825846..1825857                   attL                                                                                 N/A                 TAAATTTTTAAT
1826010..1826378                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein B; CCS40_09070; phage(gi212499712)     6.73e-36            CandidatusHamiltonelladefensaMSFFKSMLALLIIIFVPLNSYAIQKCITDGVVRELRIGSHDQHWNECPDSGACIYFKYSEDNKVKSHYVHYLTNLNDNGKGSAMYDMLKASLLTGAKINAWSNLGHCDIENGKSIDALGLSN
1826540..1826944                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein A; CCS40_09075; phage(gi212499711)     8.29e-96            CandidatusHamiltonelladefensaMAFFKPKIFVLCFIIFSYNSYAINQCINNAIVTKLIIGKPQTTNECPSDGNCIFFEYVEDENKKSGHVHNSMNLDDEGKGMAMYNILKTALLTGIRIQAWSSLNTCGFGLMYVRQGDMAYMNNEVIVESISLSN
1827419..1827712                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein B; CCS40_09080; phage(gi212499712)     7.78e-65            CandidatusHamiltonelladefensaMTLFKSMIVTLSFILLAGNSYAMQKCISGGVVSAIEIGQLSDIGPNCPDDGNCIYFEYKEYGNKNKQQHFVERLTNLNDGGKGRAMYDMLKTSLLTGV
1828001..1828990                   PHAGE_Bacter_APSE_2_NC_011551: cytolethal distending toxin subunit B; CCS40_09085; phage(gi212499713)     0.0                 CandidatusHamiltonelladefensaMKNFNKIVKDHFILLYKKQPVKSFSIFMLVCFFIPISYSQSHNHNRDVKDFIFGTWNTNGARWNDVRNLMVNGQFDVLAIQEAGALPTSSRNEGSVTESHDYNSIVNEAQRLCYIGEMNQNDVLFGTVREYSWQTSRGESFYLYYYDRRDHYVMSNGNQYPRVNTAIITRQRADNIFFTAPIYTNERRTNINRPIIGIRLENAVFFNVHAAPDRGGRNEAGSAVNIIRDYMAMNSPNHTWAMIGDFNRIPSELNSEILSSTPPMQTFIENVHTGESTHESPNPSSSRELDYGVLGGSASHSDPHVSAIIALYLLQLSMNPSDHKPVKFN
1829250..1830011                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein D; CCS40_09090; phage(gi212499714)     0.0                 CandidatusHamiltonelladefensaMEAEIGMKKKSLNLKSIIVISVLLLFSNHYTYAEKKYDFTKYCFSGRPVNHVIFNDNTPLYEWELKALNLTIVEKVFNRAKNGGGFYKKNYPSWKDWYHKSYWKTAFGYGIYDYGREEAKGNSIYRPYGIEFNDGSFSIGFTGDDVKYGDDNWKTLSGSNWGISTEIYAGQIFFDKNGRPVAIVSTDPLTGAFGSGWSYLYDKGKWEYESKDDWDNRRFGDNTESLDHNAPKFLKSSTGIMAKIFYSILHSFV
1830635..1830913                   PHAGE_Bacter_APSE_2_NC_011551: lambda-like group I holin; CCS40_09095; phage(gi212499715)     3.67e-61            CandidatusHamiltonelladefensaMPNFCQTLLDILKHRIIGAALAFMTALLRGLYQKKSFNCSLLDALMCALFGSVAHELLLFLGMKTDYTWLISIVIGYLGTDYIGSWLKKKLG
1831110..1831337                   PHAGE_Bacter_APSE_2_NC_011551: phage 21-like group II holin; CCS40_09100; phage(gi212499716)     2.34e-51            CandidatusHamiltonelladefensaMSLNMSEKYATPTAYLSSLMATVLGFFTLEQWVAVTGIVCTIGTFLINVYYRKKEYKLKARHYDDTEKNPDGHRW
1831300..1831764                   PHAGE_Bacter_APSE_2_NC_011551: lysozyme; CCS40_09105; phage(gi212499717)             7.30e-108           CandidatusHamiltonelladefensaMIPKKILMAIGGSAVLLASTMVTYFEGLRHKPYKDRGDVLTVCYGHTGKAIIPGKHYTDEECQALLDSDLKASMAVVETHVTVPLTEMQKAALASFVYNVGSGAFVRSTLLHKLNAGDRQGACDELRRWKYDEGKVSKGLINRRVVERELCLLD
1831769..1832155                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09110; phage(gi212499718)     5.24e-76            CandidatusHamiltonelladefensaMYFKFLFVAILLITITALSIVVRFQYVENSRLKLANQSLSAERDAARAQFTHYAQTVDIFNKITGATQDAHQRAIQASQPQTIKIQEAITPERCAHLPVPTAAVNRLRAHADKISPRAASAHSSNVTR
1832055..1832303                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09115; phage(gi212499719)     7.12e-50            CandidatusHamiltonelladefensaMFLCLLPLLTGCVRTPIKYLPVPPAPIPATLLDDCAPPVISEHMTWGDSLVLNEQLLLALEMCNQDKAAIRRIEEQKNDSQK
1832377..1832792                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09120; phage(gi212499720)     4.44e-10            CandidatusHamiltonelladefensaMMVSKKKMGRPSKLTVSLEKAKAYLMGNTKPWGMLCLISLARVISIFLGRPFMNGHHHQMLNFRTSLKEFSPYKKISCIVAKGNLIPLLQNCSVSMDMLTNKKLNCQAKLAARKRTTKSVLNLSAYLSVKVQIAG
1832809..1834218                   PHAGE_Bacter_APSE_2_NC_011551: terminase; CCS40_09125; phage(gi212499721)            0.0                 CandidatusHamiltonelladefensaMFKPKRIKVYFGGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRILNTYIEGINDSIFKYGQLARNIASIKSKHDFDVAWVEEAETVSEKSLDTLIPTIRKPGSELWFSFNPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAFDDAFDYRADDFIYDNIGLGAGTVKTHLRHSNDGNKMVVTGFGAGDSPDYPDEIYVPGNGEYLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPDALISLSSKIAKLSQLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANPLRITEDTEIVVPSSSSWS
1834218..1836379                   PHAGE_Bacter_APSE_2_NC_011551: portal protein; CCS40_09130; phage(gi212499722)       0.0                 CandidatusHamiltonelladefensaMAETLQKRHEQIMRKFDRAHSPQEAVREKCLEATRFARVPGGQWEGATAAGSELGKHFEKYPKFEINKISTELNRIISEYRHNRITVKFRPGDKTASEALANKLNGLFRADYEETDGGEACDNAFDDGSTGGFGCFRLTTNLVNALDPMDERQRICLEPIYDPARSVWFDPDAKKYDKSDAEWAFCMYSLSAEKYKAEYNKDPATLMSGIERSWDYDWYDVDVVYIAKYYEVKKESVDVVSFQNPLTSETVTYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQRIPGEHIPLIPVYGKRWFIDDIERVEGHIAKAMDAQRLYNLQVSMLADSATQDTGSIPIVGKSQIKTLEKYWANRNKNRPAFLPLNEIVDKQGNIIAPRRQSDTRNPSHIRRWRRYYSKRGRIFKKSPVQARRCSQCPAIPKKRLIICIVPICPRLFILTIWRRALSARVKFGYRWPVKSTARIDRFVLLMRTALTISPCRWSSMIIRPGKSSRMTYPVGVMMSRSMWGRLIPQDGMRRFQCPICWRACYRKTQCDRFYKVSFWIIWRVKDSTSLRNITVNSYRRASLNRAIQKKSRWLRRYSKHNSLMLNLSPLKGYCKGKRRFRKRRTKNWLSRKPSRHKRRREQKRKWFKFSPLLIVLKEQKLGKPLKCFTSSKKNRVMLLERMPSFKQPIRSINKIGMRLKTIQSGA
1836430..1837326                   PHAGE_Bacter_APSE_2_NC_011551: scaffold protein gp8; CCS40_09135; phage(gi212499723)     0.0                 CandidatusHamiltonelladefensaMENELIIDGQAIPVSKNQETPPQNTAEQPAQERENNAAQVQKVDTDNIEIKSDQEVEQDQDYSLQIGDEEISLSEEDDSIEGKPAPKWVKDLRKGFKETQKENRDLKRQLEELTTKQSHQSQVNHNNVIPDKPTLGSCDYDEEVYEKALTDWHENKSHVEQKQQAQQRQQQEVQERFIQRLKSHQQRAAKLPVKDYTEMEEVVRSEVPILQQEILIHAADEGTELIAYALGKNKALRQRLTAEHDPIRAAFLLGQISQKVKLAPKPKKTPKPEPELKGGAGNVKSDEFTQLCPGAMIE
1837337..1838607                   PHAGE_Bacter_APSE_2_NC_011551: head protein; CCS40_09140; phage(gi212499724)         1.13e-146           CandidatusHamiltonelladefensaMANNLESNISQIVLKKFLPGFMSDIVLCKTVDRQLLSGEINSNTGDSVSFKRPHQFKSERTETGDITGKDKNGLFSAKATGKVGKYITVAVEWTQIEEALKLNQLDQILSPIHERMVTDLETELAHFMMNNGALSLGSPNTAIKKWADVAQTASFIKDIGIKTGENYAIMDPWSAQRLADAQSGLHAADQLVRTAWENAQISGNFGAFVHCLMGWPRENKVILTEPSRLKPPLTLIICRLRIPINLRHPAPPRVKQASKPVINLNSRLLIGISKANKHYIMDQQRVLRQRCWKRLTLPLRVMSLSNYLVFRFMMKKILNTMPLMQKLRQEMQFLSERLNNRNLIFSTISFSVGLGPSPCQNCIALTPPWQRMKGFLFVYTNMRMVTQTSRCVLTCCLLMSALIRIWVVNSLVILAA
1838655..1838846                   PHAGE_Shigel_Sf6_NC_005344: gene 6 protein; CCS40_09145; phage(gi41057284)           7.18e-12            CandidatusHamiltonelladefensaMERKSVFAWSDNAAGYVQAVIVTRDFPEFEKRGFVSSIDEIKTPEKSQEPKKGKRANDDKTAD
1838827..1839309                   PHAGE_Bacter_APSE_2_NC_011551: DNA stabilization gp4; CCS40_09150; phage(gi212499725)     8.88e-114           CandidatusHamiltonelladefensaMTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTSDDASGLPRKYKQVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNTDPVS
1839281..1840696                   PHAGE_Bacter_APSE_2_NC_011551: DNA stabilization gp10; CCS40_09155; phage(gi212499726)     0.0                 CandidatusHamiltonelladefensaMPKIQIPLAKGLVKDIKTADYIDALPVNMLATPKEVLNASGYLRSFPGIEKKQDAKGVSRGVHFNTKNNALYRVCGNTLYRNDKEVADIAGMSRVSMSHSSHSQAICFEGKVKLYRYDGTEKALSNWPKDKYPQYDLGEVIDVCRNRGRYIWLQKGGERFGVTDLEDESKPDRYQPFYRAESQPDGIVSVDAWRDLIVCFGSSSIEYFTLTGSADTSQPLYIHQAAYMIQAGIAGRDCKCRYQDKYAILSHQSTGQPAVYLIGAGEKNKISTATIDKIIRYYSADELAASFMESIRFDNHELLLLHLPKHTLCFDGSASHQYSQWSLLKSGFYDEPYRAIDFMFFDNQITVGDKKEGVLGHLIFNASNQYEQQTEHLLYTPMIKADNARLFDFELEASTGVAQIADKLFLSVTTDGINYSREQLIEQNSPFQYDKRILWRRIGRVRKNIGFKIRIITKSPVTLSDLSIRME
1840696..1841052                   PHAGE_Bacter_APSE_2_NC_011551: DNA stabilization gp26; CCS40_09160; phage(gi212499727)     3.03e-48            CandidatusHamiltonelladefensaMNRRNADNPVELQVTHIDPTILPANFSTAYRMIVLNNLSDMGRVAGKANEAADDAYQSKTRNDEQDRVLATQAQQINAVSIQASAHQSEIQTLENGLIAARQRINALEEALRSHGLID
1841052..1841519                   PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; CCS40_09165; phage(gi212499728)     4.52e-110           CandidatusHamiltonelladefensaMEIKVIENIEQFYRFFTDKAKVGYAMENNGEYQLKNNQLYVGVYEGLMLVGFFSIEFIRNKLIEVHPVFEPGFRGQYALAATRRFSKWLMDNLNFSTVITYVPEKTPWGKVICQLMKMRKVGVIDNALTAGHHQINMTLYQVTKEELVNGWKQRR
1841497..1842126                   PHAGE_Bacter_APSE_2_NC_011551: injection gp7; CCS40_09170; phage(gi212499729)        5.00e-140           CandidatusHamiltonelladefensaMGGSSGDNGASEQARASREAIGLQRAQWNQVMQNLAPYMKVGGPALGELQNLTTLDGQGQALNQFYHSQPFNDLANQARYQHLNAAEATGGLGSTATGNQLAAIAPALGQNWLSGQMQNYGNLVGIGMNAASGQASAGQNYANNVGQLLQNMGAANAAAANSPSGFHRALGGGTAGALTGASIGAMKGSIGGPWGAAIGGGLGLLGSLF
1842139..1843527                   PHAGE_Bacter_APSE_2_NC_011551: injection gp20; CCS40_09175; phage(gi212499730)       0.0                 CandidatusHamiltonelladefensaMATFQLAGLPSLQIENQTAGGLGLPTVPQYAERPNTGVMLAQGLGAISERLEANKQQQSEADFMKSLGTAYAANDRDAMKQLAAAHPEQIERIQKGMGFIDQDRNQMIGQAAMDLRLAAKRGDQSLIASLQKNVPLLGQFGLTPEEVFLSYKQDPQQFDKMTDLIHLHADPKSYFDVQDKQEGRNIDRNKLAETERSNRAGETLTMRGQYISGANALTAAYAPTAAMQNYRQYAEMLQSDPDAAMAFANAAGINTVSKKLMKVEKNDDGSVTKYYTDGSEETGKINQPIAGDGIKPISLPHAQSIIDKANEGSKKAAGFALRLKDSMDSMHKLGKKIDTKRVALINRALGEGAIANLSLSPVEQQYMVNARDALYAILRPETGAAITLPEMQEYAKMYLPQPGDSTLATETKMKKMQGQYNALRGQSGRVYDALVVSSAAYNQRLQSDGRYTSKSGIQFKVE
1843527..1845402                   PHAGE_Bacter_APSE_2_NC_011551: injection gp16; CCS40_09180; phage(gi212499731)       0.0                 CandidatusHamiltonelladefensaMKVTAKGKTFVFPDGTRIDDIGEAIDEYFAGQSTQSGEIANHHDNNALSSAQMANLDIPTDEILAYHDKQNPHESSQIQDPFTEAGRGLVNIPFDVLQGGANLINALSQAVGGGRLLGDIYRPVDRPADPYALAGETVGDYLIPGLGAAGKMMVGSLADASNQRGDFAQNAATNAGVNLAAQGLLSAAAKGVGKGITALKGEIAPEAAQKMMTAESMGVAPMTSDMLPPQNALTRGLTQGGEGALLGTGARRAAQQTTRRKLVSDYLDRFGEYNPDTVVKSLTSNLKSRKDAAGRVIDDITQKMGVNPVETTHAVNAIDTVLPRLEKLGTSVDQNLLNTLRNLKGELTQQGGVDFDLLKQHRTAFRSNVQGDALVFPNHAKAITNRVENAMTKDLRNSVSKSLSPRKPPLTSKRIRITKTSTTRCINASLATIKRPVKPPRVNQRSLQSCLRYTYMASAGYRKGCRTCSIYRQNCNGRGFARKIHDTNQVEEASWWRNLHGIQRKAYEGAGAQCPPDNSARGYGKYSDTDGSGIGSAKDWSGFRLWRGVSSRSGLRDGDEDVVQAGKKRIVAAGKQKDGHASLAGLKRCAFSPYHCGLFQSTAVRNAIG
1845431..1846450                   PHAGE_Bacter_APSE_2_NC_011551: tail spike gp9; CCS40_09185; phage(gi212499732)       0.0                 CandidatusHamiltonelladefensaMSKIIPNIVVSMPTQLFTLRRKFQACSNGKIYIGKSNTDPTIPTNQIQVYIENEDGSTVPVAQPIMINHAGFPVYNGQIAKFVTVESHSMAVYDSDGAQQFYFADILKYGPNRFKEQAAQYIAYIEKLKGTTTQTTGDSTTDVMSQKACTDTFAEKNSKEPLKAGRLNLESSNGDTIFNLGGTDGSAGSEFAYVKNSKRTQIYDTATQTTLLFPQKNGTLAVEEDTYTKTEVDAKINSVKWTTNKLANGWMKDPNTGIIIQWGSVYKTDRSRKLFPMAFPNTLAGMGLANFNYDDTLSEMYAPNIMSADKVGFKMRQSLVTDGYKDSPLTDMRWIAIGW
1846429..1846893                   PHAGE_Bacter_APSE_2_NC_011551: tail fiber; CCS40_09190; phage(gi212499733)           1.78e-71            CandidatusHamiltonelladefensaMDCNRMVIMNSVNEETYYFGQRKLAWFAGSMKKDYIEAGSWDDKAKAVPYSVYREFALNPAPIGKTLGISEKGDPIWVDIPPKTKHQLITEAEDKKSGLMQGAREVISPLQDAIDLEMATQEETQKLTAWKRYRVLLNRLDTSNAPDIDWPKKP
complement(1847336..1848480)       PHAGE_Escher_HK639_NC_016158: integrase; CCS40_09195; phage(gi356870629)             1.00e-53            CandidatusHamiltonelladefensaMSIKMRYGIWHCDFVTSNGQRIRQSLGTADKKEAQELHDKLKSNAWRENKLGEIPQKTFEEACVRWIKEKQHKRSLDDDKTKIAFFLLHFSKKSLSNITEDEVTHVISEMKNRRHQQRWVSIKRASLKTGYQVPDFNDKAVSPAIAVNICLLCEVSCVLPPMNGDGPSPIKYENQMISVSAGYLVKKRIDFQWIKISGRSLRPRGYVVLILSINGSKIWKEKWRGSIRSKQRQVKRLELPLMRRLVGFESNLEDTLVGFLERRQSKAVKEKSRILVNSGLMIIELGKRGKKRGKIFVFMILDILGQVGYNQVFHSLFCRKWAAGNLSKWYVVTHTFRPATLSMPRKLTRRWQTMSLIWHFIIPAG
complement(1848700..1849230)       PHAGE_Strept_315.6_NC_004589: putative helicase; CCS40_09200; phage(gi28876470)      1.90e-58            CandidatusHamiltonelladefensaLYTDDKGAFETVHDTKLDALEEMIQEAAGQPVLVAYNYQSDLARIKVRFPKAELIGHAADTIDRWNTGKIPLLLAHPASAGHGLNLQSGGNIIVWFGLNWSLELYQQFNARLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHITQKALLDALKKDISGRLAPDLNLKLRGKQNE
complement(1849232..1849653)       transposase; CCS40_09205                                                             N/A                 CandidatusHamiltonelladefensaMPRYGYAHGVNAVSVNIIGRQRGEPMSGRYWEKRWRWDCSCVLIVMCFTPGSFRYFCRVCHPTLWWSWIMRPSTNVWPLKKSMTRGISLNICLLTRLISILLSINGQKQKAKEERSIAVSMLYFLITRHRNYFVAG
complement(1849711..1850068)       transposase; CCS40_09210                                                             N/A                 CandidatusHamiltonelladefensaMSHSVDFRRHVLNVREKEKWSIRETAKRFHIGATSITRWLKRIEKNPSSPAANRSGFTQGCALPGCLPAKGTFRGVYQSHLVRPETFGRHLKKPSIIPRRTKIGKPSKTRLA
1850364..1850612                   hypothetical protein; CCS40_09215                                                    N/A                 CandidatusHamiltonelladefensaMENPPYPAMTVKQIIKELVSRSEGVKFNSNIDETQLTKLLQHHAQYYDQIKINGKKHRPWILVKGKKLDNKEIRESVKQCGI
1850600..1850827                   hypothetical protein; CCS40_09220                                                    N/A                 CandidatusHamiltonelladefensaMRNLKVAAKWHLKSTGAPDIFYIISNVYLEKVAGGTYFLLMRKKKNNKKYYVVYMFFISATLRTVPPIKREHRIA
1851403..1851747                   PHAGE_Rhizob_RR1_B_NC_021557: hypothetical protein; CCS40_09225; phage(gi514231154)     2.34e-08            CandidatusHamiltonelladefensaMNVLHEIAEVIGPDMAVKLGQLMGGARLYVPAKVAEDHPFSLVLGASTAQKLCDYYCGDVIEVPCKKVFRQVRNDIISREYHSMTPEKENRANILALKYGLTSRQVLNIARLAA
1851949..1852421                   PHAGE_Pectob_phiTE_NC_020201: endolysin; CCS40_09230; phage(gi448244889)             4.04e-38            CandidatusHamiltonelladefensaIRPRSRQRLEGVHPDLVCVVERAIQITPVDFTVLEGVRTVERQKTLLAKGASKTMNSRHLTGHAVDLGACLDGSVRWDWPLYYPIADAMKQAAEELGIRVYWGRVGVALTMKTMATQLSRTSVKKRWVKSHSWMAHTSSFHGQTFPTMHAWRRPHAA
1852421..1852824                   PHAGE_Salini_M31CR41_2_NC_042352: membrane-associated initiation of head vertex; CCS40_09235; phage(gi100034)     9.01e-07            CandidatusHamiltonelladefensaMAVWPFLSGLVQPVTQLIDEMHTSDEERLQVKSRLFEMQSAMAAQMLNYEARLVETKTKVIAAEAQGASWMQRNWRPLTMLTFLGLVVADTFGLTEFRLAQEAWTLLQIGLGGMSWVAVLKKSFLNSLNSCVRTAG
1852985..1853263                   PHAGE_Burkho_AH2_NC_018283: hypothetical protein; CCS40_09240; phage(gi399529082)     1.20e-07            CandidatusHamiltonelladefensaMNPPNGRREWHLDKTVSIGHIISTLVIALSLFSWALTIDKRVEQNAQSIEFLAQNHKRLENHVDSTRNEIRQDLRAINAKLDRLIERRMEGQ
1853263..1853793                   PHAGE_Escher_HK639_NC_016158: terminase small subunit; CCS40_09245; phage(gi356870601)     4.09e-08            CandidatusHamiltonelladefensaMANIIDWLGVETEYRANLQSLRKMATEFGTSEGTIRRRARQYGWVRDGSMVKRERVKAHFAGKPAPEVANQPEAVVKAIDAAAIEDIKDMGTGLENARLALEIANKALKRLAEEKQYLHLIVQDARNLKVLTETNRHNVEVIRRIRGLDDPATNDRIPLSEVDDVIIERYLHARTQ
1853777..1855214                   PHAGE_Cellul_phi18:1_NC_021790: phage terminase large subunit; CCS40_09250; phage(gi526177095)     1.35e-19            CandidatusHamiltonelladefensaMHVPNKAQFYEAMLRDDLSSFIQRTFATVDPGAQYLHNWHVDLIAEYLKACTDRDIKRLIINIPPRYLKSIAVSVAWPAWVLGHAPSSTFLASSYSDKLALKHSVDCRLVVQSAWYRKVFPQIQLVRDQNEKSKFVTTARGHRIATSTGGTATGEGGIFLWTIRTTPDKRKAQQNEKKRWNGLTRLSTAVTTRKTASLWSSCSGFMKKTCLATYSPKGAGNMSKFRPSQTAGRLTLAVSVKPEAQVNFCIQNGKGNLKSPRPRQHALMASRVNTSRNRSRLKGHDKAVGPSLNTPGSPCPNCAIMGYRLQASNPVCVYHMGRNQTGLLLAGGVAPGGISAFKVGSEEPGKMAPECDFDGQSQWSIFDSRVKGNYPTPHHCHHPTRQADPHVCPVCPVSGEGLYSFSRLVTGFERAIHFPTGRARPNRQHQPILGLGEPSATKLRLQPRGRWPSLQTSRSMVG
1855217..1856775                   PHAGE_Rhodov_vB_RhkS_P1_NC_031059: membrane-associated initiation of head vertex; CCS40_09255; phage(gi100034)     5.05e-30            CandidatusHamiltonelladefensaMVRNKKSQKKQETQTLSLELAGPTAVRHLWGRGSVASGLTPQRLANLLKSAAEGDTEAYLTLAEEMEERDPHYSSVLRTRKMAVASLPVTVVAGGEDSRAQQCAQDIHRLMEAPDFGDLVDNALDALGKGYSVNEIMWDRTGVKWEPKAYRWRDPRFFLFHPEHPEDMRIVDEADPIHGLSMPPYKFIVHQPRLKSGLTLRGGPDWWPFPISARCMAKTGWDSLRVTVFRSGANMARQPVKKIKKYKRRWPIALMRRPSCLIPWLNFSRSRRRPGPLKSFPVWSNGLTGKSPRPYWVKRRPRKARRGNAMKRRRKPYGKTLLPQMPGNWPIPSTVTSGPILILIMALKPFTRVSSLSLKRKMPHRRIKSWCPWVKSRHQREPSWGSQSRRKRRIYVSLQPPLKPPQQTAHRVKAIPALPVQTGLSTEINLMILRFQRRCPIGNRRPVSPIPSLKQRRLKTMTSERCSPNYWTRRMRSQTPWQKRDSWPMEPAKVRNGA
1856775..1857533                   PHAGE_Vibrio_12B12_NC_021070: F protein; CCS40_09260; phage(gi481019167)             1.85e-79            CandidatusHamiltonelladefensaMTPTAPPPPREALAYLRAKGYKIAWDYRDLWKEEHVRAFTVAKAMTQELLMEIRQAVDAALAEGKTFKQFQDELEPLLGKRGWLGKVLMEDGAMVELGTPRRLKILYDTHMRTARAAGQWVRIERNKAALPYLRYGLGPSREHRLQHVQWEGLILPVDAPFWDTHLPPNGWGCRCRVRQMTERQASQRGGVSEAPEQKTTFWENRRTGKVEEVPTGIDPGWNVHPGKARLSHTQTFGKEKDIEFRSIVGTIR
1857714..1858670                   PHAGE_Sodali_phiSG1_NC_007902: transposase; CCS40_09265; phage(gi89886005)           4.82e-15            CandidatusHamiltonelladefensaMALSKFLDPKNDFAFKKIFGTEKNKGILIHFLNDMLAFSGNQAITEVTFLSPVQDPDILAKKQSLVDVLCQDKNGVKYIIEMQVAKTKGFEKRAQYYAAKAYSQQADQGDHYHELKEIIFIAIADCLIFPDKPSYKSDHIILDRDSGEHDLKDFYFTFIELPKFKKAPEELTSMIEKWCYFFKHAEDTHPADLEKIIGTDSVIKQAYHELDRYYWTENELLIYEQEVKRTRDAQAIIAQKLDDARAEGIKEGKAEGREEGIKEGREEGIKEGREEGIKEGMHKAQMAMAKKLLAHGVERNTVKLSTGLSDEDLNQLQE
1858733..1859659                   PHAGE_Vibrio_12B12_NC_021070: I protein; CCS40_09270; phage(gi481019166)             6.37e-66            CandidatusHamiltonelladefensaMTTHTFALNTELRPLLEATAAQKGTPLWVELIPVGEQITGRDGRSWVNDHPQGGVDAFQANHADLPIDIEHATELKAPKGDPAPAVGWIKGLEVRDGGSIWGWVEWNPQGRSLMEEKSYRYLSPVFTFDTHTKRILQLYSAGLTNQPNLHLTALNQRIQPAGEPAMTLPLALCTALGLSAQATEAQAVSAIHQMKTDKDKALNRASHPSLEKFVPRADHDAALNRAQAAEIRLREIEHRALHQHIEDELEKAQKMGAITPATVDYHRACCQQDGGLTRFRAFLQCAPRMGEDTDWEKEGGQQTQPGTE
1859735..1860655                   PROPHAGE_Escher_Sakai: putative major head subunit; CCS40_09275; phage(gi15834228)     2.62e-129           CandidatusHamiltonelladefensaMAIVTPALLKSLFTGYHTFFQKGLGMARPQYNKIATVIQSSTASNTYGWLGQWPGFREWVGDRVIKNMESHGYQILNKAFESTVGVKRTHIEDDNLGIYAPMMEEMGRATAVFPDELVFPLLKSGFHSECYDGQYFFDTDHPVNRQMDGQGEDISVSNVLIDANYTGDAWYLLDTSRALKPLIYQERKKPQFIRMTQEEDEAVFMRGEYRYGVDLRCNVGFGFWQMAYGVKAPLTLDNLWTVYSHMRGFKADGGRPLGIKPKMLVVPTALEKQATQLLERELFVEGSDPVSNELKGKFELVVPDYL
1860713..1861056                   hypothetical protein; CCS40_09280                                                    N/A                 CandidatusHamiltonelladefensaMNQRFFIRSKNRQGFRRAGELFTSEGKMIERSHFTESQWAQIKAEPLLTVMEEAEAPVDDTPSERIENIVEAIGIIDPDKKPPKTSKRWVKTSLPHNVTGPGLFTRHESQKGAA
1861063..1861491                   PHAGE_Entero_SfMu_NC_027382: hypothetical protein; CCS40_09285; phage(gi849255266)     4.34e-23            CandidatusHamiltonelladefensaMPYATLEEMTHRVGEDFLYTIADRNNDDRVDMTTVEHALSDASGLMDSYLSTRYPLPLMHFPDLLKRLCVDIAVYWLAQNGGGTTEEKRQRYEDAVAWLERLAQGKAELPVTDSETTTPTGTEGACSHSHTRWFSRHQLRAF
1861491..1861940                   PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; CCS40_09290; phage(gi481019160)     8.62e-25            CandidatusHamiltonelladefensaMAGVGASLELRGIERLNPLLDRLGGIDPQQVLSVLGNLVEKQTVDRFIDEKESPDGDKWPEWSPRYAKSRHRHQDLLQSSGDLIDSIQSVFGLGRTDIGTNLMYAARHQFGDTKRGIPQREFLGISADNLVELQNTLEDWADQLIQGAL
1861937..1862469                   PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; CCS40_09295; phage(gi481019159)     3.00e-10            CandidatusHamiltonelladefensaMKLTALRQAIMDKINAQLPELKAVAPHPGRFNLDELKRIATQLPAVRVALMGMPRVHMLETGENEAVLRLAAFVVTGDRRQLPKDEAALAIVESLLVLIPGQRWGVTGTMDAKGVKADNLFSGQVERQGVAMWAVTWEQSVRLGKDVWDGGFSRQPCMYRMMLNTSVMKWLMTRCWDGA
1862466..1863044                   PHAGE_Pseudo_phiCTX_NC_003278: predicted baseplate; CCS40_09300; phage(gi17313235)     2.31e-32            CandidatusHamiltonelladefensaMINHILQRLAEVERRLSNIVFIGTIMDADYDNALVKVEAGALETGWLHWMTARASHDVDYWAPEIGEQVLLLCPDGEPELGVVLPALYQNPFPATDNRPTVRRTRFADGADLSYDREAHALKIMLPEGATTALISQGGIAIVGDVHVTGHIRATEDITDHTRSMQADRDIYNGHTHRSPETGAETSTAGAPQ
1863041..1863376                   PHAGE_Pseudo_PPpW_3_NC_023006: putative baseplate assembly protein with lysozyme; CCS40_09305; phage(gi564292493)     9.16e-44            CandidatusHamiltonelladefensaMNGVNRTTGQILKGHAHLRQSITDILTTPVGSRVMRREYGCRLFEWVDAPLNENTMAEMVAATAEALERWEPRFRLLHVGVTRVKEGHITFDLVGEYLPEGKELKLEGLVV
1863373..1864254                   PHAGE_Escher_vB_EcoM_ep3_NC_025430: tail protein; CCS40_09310; phage(gi712913208)     4.15e-105           CandidatusHamiltonelladefensaMTNAIHLAILPDPDVVQPLDYDSILSEMLADLRHRAPELTALVASDPAYKILEVAAYRELLLRQRVNDAGRSVMLAYAKGKDLDHLAALFGVSRLVIDPGNPDAIPAFPATYEDDERLRQRIPLSLEGYSTAGPIGAYVYHTLAASGDVKDVSVTSPSPGEVRVTVLSMDEKGVPDAALLQAVTERLNHEAIRPLTDHITVQAADIIEYHISAHLTFYPGPDRSVVAEQSRIKVTEYATQQHQLGFDVTLSGLYAALHQPGVQNVRMTSPAEDILVRAHQAAFATAIHVSEGG
1864256..1864791                   phage tail protein I; CCS40_09315                                                    N/A                 CandidatusHamiltonelladefensaMRETLLPRMPLRKSGAKRLPPDWAKSLLKSVGYGILRRAQPICSPGWHGPYRSINGTVTGMNARNGKSSTQLERIATRAPSLRSEVCCAVLDLGKSRSSKAAESNLCLATLNDGPVIASFFNVLSRRPRQKCSKNPKRGHRRVVIWSVSNIPLFIMIFHNKPDITANTLMGATHGA
1864788..1865708                   PHAGE_Erwini_ENT90_NC_019932: phage tail collar domain protein; CCS40_09320; phage(gi431810938)     2.52e-26            CandidatusHamiltonelladefensaMTDLTELSQWEDGIYQIETRDPVLGGPEGIANRQAQQLGNRTTFLKEGQDRLNTEFYHHREEEDPHPVYALKKSPDFTGEPKAPTPEFKNSSRQLATTEFVTRAVNALTDGAPEALDTLKELAKALGEERDFSTQILQQLSQKLSKNDHGADIPDKAQFIKNLGLSETVDCAKNALDKRHGGEVQGQIQVNDTLRVSKNGKTATYQEDGNIDGECWGGLLNQWITTKITEAVQSRAPWEEVNRTFVRDIRLSSVQLMSVQTYDRQLSAGAVVTGFKTNGLWEMKSYAYYRFIQKNINGQWITVGQG
1865804..1866250                   PHAGE_Salmon_SP_004_NC_021774: tail fiber assembly protein; CCS40_09325; phage(gi526003632)     1.33e-27            CandidatusHamiltonelladefensaMQDEQGRDWYDLQKTFAPHTVKVVLDEKNTVVSISKDASALFPLNGSVVELDSLPEGATHDGEWILDGHQVVKRVDTETEKTQKALRKKARFMDVATKALAPLADAVELGVATEQEVQALKSWKAYRVALHRLDLSQSEITWPEVPRG
complement(1866336..1866650)       hypothetical protein; CCS40_09330                                                    N/A                 CandidatusHamiltonelladefensaMRTKKNISVLFQHDVQPALKGRCMDKCLKSAQKPEKPIDFSDIPETCEKDWVGASRGQFYRPIKKQLTVRIDADVLEWLKSEGDGYQSRLNRILRSAMLSKIQS
complement(1866565..1866814)       hypothetical protein; CCS40_09335                                                    N/A                 CandidatusHamiltonelladefensaMNQRKHGVSFEEAMQVFNDPFHITRQDRTEKGDLRWQTIGMSDRIIILLRTYLEEQRRTYPYYFSTTYNPHKEDVWTNALA
complement(1867086..1868339)       molybdopterin-guanine dinucleotide biosynthesis protein MobA; CCS40_09340            N/A                 CandidatusHamiltonelladefensaMVVVIPKKRRDGKSSFLKLVSYLSFREDNPGDIPVTADAFFDRPSTSKTATFDRLIDYIDRHASPESQHLITHLPDGSHRILCEGVLCQTNTLSIETASSEMNAVASNNRRCLDPVYHFILSWPEEETPEASQVFDSALFCLKEMGMVDHQYVFAIHRDTDNLHCHVAANRIHPLSYRAVNLYNDVKILHKACRKLELKYDWKPDNGCWKRDQNHQIIRAESQYPSAPRAATQFEYHEDKESFYSYVVRTCRTELTSILKGPLQEWEEAHAVFLRAHLELKKKGSGLAIYDKNCPNNVPLKASSLHPQLTLSKLVPRIGEFESAPRVMEFKNEQGEVTLTNYMVSSHYDDRLHLRDHQARMTRRLERAEAREELKLRYQTDKKEAKCPSFDAKNRFRTLSMTFRFRRAHVCVAVRDPL
complement(1868343..1868651)       mobilization protein; CCS40_09345                                                    N/A                 CandidatusHamiltonelladefensaMSQSEKRQRTQLLLGILCTPEEKKLIQEKAEASGLSVGEFLRRCALGRRITPKTDVKLISELSKTGLLQKQLFNEGKGVHSQEYSDILVALKKAILKIDFKE
1868764..1868961                   molybdopterin-guanine dinucleotide biosynthesis protein MobC; CCS40_09350            N/A                 CandidatusHamiltonelladefensaLKNIRLNKDDVLQNLKAQIIKLALNKGYVSEDIKSALESAGIKVGLKSIQKMISDKKLEKKVIKK
1868993..1869004                   attR                                                                                 N/A                 TAAATTTTTAAT
complement(1869128..1869310)       hypothetical protein; CCS40_09355                                                    N/A                 CandidatusHamiltonelladefensaMLKLDKLKFSQWKNVRRIILKKYTYLFYIYMKKIMTRSCILINLIIYKTYFFKNRNFLKK
complement(1869772..1870008)       hypothetical protein; CCS40_09360                                                    N/A                 CandidatusHamiltonelladefensaMKKKPSLDEFRSGGGETVTEKTNEIYSVSERANKTIRIRKSFEKKLKENAFYRSMKENRRVTESDIIDEALEKYFKIL
complement(1870005..1870640)       PHAGE_Burkho_KS14_NC_015273: gp40; CCS40_09365; phage(gi327198309)                   3.28e-23            CandidatusHamiltonelladefensaMRISIVNTKGGVGKTTTAVHLATYLSSLASTLLIDGDPQESAATWASWRRERLVKRGSLLLTTTCLHGKAIYDEGKSLSKGFMHTVIDAGGRDAPGLRNALLLSELAIIPIGASHLDASAMTDLLEVLDLATDYNPTLKAKVLLSRIDPRTKDAKEMIEFLKENDLEVLSARVCKRVSFRRAIGEGSTVEELGKDTVAISEMNSFYKEILS
1870699..1870710                   attR                                                                                 N/A                 TTTATAAAAAAT
1871030..1871638                   PROPHAGE_Brucel_1330: transposase, putative; CCS40_09370; phage(gi23502708)          7.78e-37            CandidatusHamiltonelladefensaMLAERGVSVDHTTLYRWVQRYAPEMEKRLRGYWRNNPSELSQWPIDETYVKVNDRWAYLYRAVDSRGRTLNFYLSSRRNRKAAYRFLGKILNNVKRWQIPRFINTDKAPTYRRALTLLKREGRGPPDVEHRQIKYRNNVIECDHGELKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQAESFYFGHPPGEMRLVNRVFEM
1882776..1882787                   attR                                                                                 N/A                 TTTTATAATTAA
