gi|00000000|ref|CP023468.1|  Salmonella enterica subsp. enterica strain BAA-1586 chromosome, 4639823, gc%: 52.32%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1094743..1095441)       PHAGE_Pseudo_H101_NC_029094: exodeoxyribonuclease X; COO54_05210; phage(gi985760125)     8.80e-19            SalmonellaentericasubspentericaMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLEDVQADEQRSNGTPQ
complement(1095465..1096121)       carbon-nitrogen hydrolase family protein; COO54_05215                                N/A                 SalmonellaentericasubspentericaMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
complement(1096228..1096458)       PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; COO54_05220; phage(gi422936677)     1.42e-22            SalmonellaentericasubspentericaMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEVVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
1096596..1096970                   hypothetical protein; COO54_05225                                                    N/A                 SalmonellaentericasubspentericaMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
1096971..1097846                   hypothetical protein; COO54_05230                                                    N/A                 SalmonellaentericasubspentericaMMLTFVWITLRFIHFASLMLVYGCALYGAWLAPASIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLVVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVVYCMRMAQGRWRQHAISAMMRFSRYGHFFVAGVLLTGISNTLLITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
1097863..1098216                   PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; COO54_05235; phage(gi971764937)     9.60e-12            SalmonellaentericasubspentericaMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS
1098274..1098393                   hypothetical protein; COO54_05240                                                    N/A                 SalmonellaentericasubspentericaMMTDKTPGFFNHLRHKLENLASSSILKGQGDLACINANF
1098315..1098327                   attL                                                                                 N/A                 TCACAAACTGGAA
complement(1098589..1099668)       PHAGE_Entero_HK022_NC_002166: integrase; COO54_05245; phage(gi9634144)               1.23e-86            SalmonellaentericasubspentericaMSQKKYDANLPKNLTYRRSRKTFAWRNPLTDEEIQLGQISRRDAIAQAIEANHFIAKNYTPVGLIEKLKGTDSLTVTKWAEQYEILLKRRNLSANTYKIRGNQLETIKEKIGRMLLIEVSTRHIAEFLETWIAEGKNTMAGAMRSVLSDMFREAIVRGHIAHNPVEPTRSPKIEVARDRLRLDVYNKIREAAEQLPAWFPLAMDLALVTGQRREDLSCMKFSHIIDERLYVKQIKTGMKIALPLSLNLPSLGLRLSTVIERCRLVSRSEYLISAGIRKNSPNGSIHPDSLTKKFVAARKLTGINFSENPPPFHEIRSLSGRLYKDAYGEGFAQKLLGHTSENTTKMYLDERDEKAYMML
complement(1099649..1099921)       excisionase; COO54_05250                                                             N/A                 SalmonellaentericasubspentericaMTMSFVRLETWGELNYPDDPPPLTTLRRWARNGNIYPTPVLHGRTYRVDPDAFYIKPNKVGLVLEQHHPNGRTGKKSALLERLINESKKV
complement(1099982..1100218)       hypothetical protein; COO54_05255                                                    N/A                 SalmonellaentericasubspentericaMMDTRDLCPLCQKLHEAGESIRVADHRKNSALPQPCLTEEQADRIRAAHWAGFTGRRAGDVKVVPGGGQQSFKFYPDH
complement(1100509..1100694)       hypothetical protein; COO54_05260                                                    N/A                 SalmonellaentericasubspentericaMYKYRITAIVKKPGNSPTNWVRFSDKKMNKAECEKMLSGRTEAGKSREEKVTLEEFKCIKE
complement(1100741..1101571)       PHAGE_Salmon_epsilon15_NC_004775: RecT; COO54_05265; phage(gi30387413)               1.96e-106           SalmonellaentericasubspentericaMPKQPPIAKADLQKTQGARTPTAVKKNNDVISFINQPSMKEQLAAALPRHMTAERMIRIATTEIRKVPALGDCDTMSFVSAIVQCSQLGLEPGGALGHAYLLPFGNKNEKSGKKNVQLIIGYRGMIDLARRSGQIASLSARVVREGDDFSFEFGLEEKLVHRPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIELVRAQSKAGNNGPWVTHWEEMAKKTAIRRLFKYLPVSIEIQRAVSMDEKETLTIDPADASVITGEYSVVENAGVEENVTA
complement(1101564..1104254)       PHAGE_Erwini_phiEt88_NC_015295: exodeoxyribonuclease; COO54_05270; phage(gi327198600)     3.01e-95            SalmonellaentericasubspentericaMSIKQEEYSFYYKVKNESARKRLGFKAGFFWCTAKKQSLALSRGELAMDAAGFDEADFARPVRVHFPVENDIPPEGVFDTKFCENREPGGEDGKTLTLIPGAASAVKSDETERADGAGTPTGENGIQESHNPPANPQLTVVATLPFRHRVLAQYIGDGEYLYHVDTDQKKEIACLEMDTQNTTVQNLILAAENVEPFKKAIEHDIHEAVNAYKQVSPVDGKVPELCTTIKFFKEWFRAEHINRGLLVKEWAERLKNKPAPVKKTGPHKVIVDDVNKPERPRRSEKPTHRTINYELACGFCEELDLNNLRPAMDFAKRIIAEDREDWKRMSMTVGIIPDIKGYDRQTIIDLVRKAPKAVHNGNPDLRRMWCESFLAVHGVRDPDWYEYVPDNTPTTHEENAARLRQAGKCLRDIEAGRFQCDEEKQQPTGELADEPATPEAVEQDTTEHHPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAARGEYVEGISDPNDPKWVHNNYSASNQGEKEEVVPEEKQPAAEPEAVTRNADGTFDVSALFSAPSNQIEKMEARTEIDGEMRKESNQRETAGDAVQEITADGGSGTGGDEAGEAADSIENGNITVPDDIQPGIYYDIPNEAYHAGPGVSKSQLDDIADTPAIYLWRKNAPVDTEKTKSLDTGTAFHCRVLEPEEFSKRFIIAPEFNRRTSAGKEEEKTFLEECARTGRTVLTAEEGRKIELMYQSVMALPLGQWLVESAGYAESSVYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFRTAYYDYRYHVQDAFYSDGYRAQFGEIPTFVFLVASTTTECGRYPVESFMMGEDAKLAGQREYRRNLQTLAECLNNDEWPAIKTLSLPRWAKENANA
complement(1104395..1104730)       hypothetical protein; COO54_05275                                                    N/A                 SalmonellaentericasubspentericaMKNTTPDAAVLQELKELTSRIFKICEQNNMPVVIGYSYELSRNEDGYSINKSITAYADEKTVAWDSTIAAAAMLLKVKDVPREVIGALKSLSVASDFARAMSEASKEKSLH
complement(1104806..1105012)       PHAGE_Escher_P13374_NC_018846: host killing protein; COO54_05280; phage(gi410491620)     9.34e-11            SalmonellaentericasubspentericaMKHQHYGTMEVIRQCAVPGTMVKYNDRIYKATANTKGKLTLTNIRENITIRDLVIEIYLDGKGEPLTN
complement(1105016..1105291)       hypothetical protein; COO54_05285                                                    N/A                 SalmonellaentericasubspentericaMSTIGIYLEGADATIKPVNIHRFGVEIEGISLSELVESVDDTPELLDVIGEKNIARWISTRNKLDSFLDYFDHRDVADWLEIRVSELQQED
1105552..1105731                   hypothetical protein; COO54_05290                                                    N/A                 SalmonellaentericasubspentericaMSDTTSPFVFPEKAAHEVVLELIRAGKISYASDASDVFTHMLNHYRAERDRPQQEDKAS
complement(1105676..1105864)       hypothetical protein; COO54_05295                                                    N/A                 SalmonellaentericasubspentericaMKMQELPVEVQTIAASTLRRKMKINDQRADKEPVEKLAHEVREAFTKLYLPVEVDPSQRGSG
complement(1106175..1106600)       PHAGE_Entero_mEp213_NC_019720: prophage repressor; COO54_05300; phage(gi428782641)     5.05e-18            SalmonellaentericasubspentericaMRKENEKIAASRLNDEIAMRLKGRRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVYDAVVLGEALGISPPELLFGEKDSSQAWLSDQHKKLLELFNQLPSSEQQRMIDLFEVRLKEIDDYVETYLRNRLKNSTQPPEN
1106697..1106951                   PHAGE_Entero_mEpX1_NC_019709: prophage antirepressor; COO54_05305; phage(gi428781916)     3.99e-25            SalmonellaentericasubspentericaMNKISTYRKQLGLSQRQFATHLGWIQSRLANYEANFRTPGLEECRKIVATLNHLGSRCVLDDVFPPHVNDSRTILAKVNNHDHP
1106938..1107432                   hypothetical protein; COO54_05310                                                    N/A                 SalmonellaentericasubspentericaMITPETASQALSSWLAYLQITQETATQLITRAFLEQPARPEIAVHRIEHDDGTVDYDAWRRNRINIFQRWRKRETAEHCEKFSALIPAILEAIRKSAPELHKRITAGQSIEYLLSQLLKKPQWQARYFLARRWRILSESVTRPYMRYRRYVAVIASSTRDMTSE
complement(1107856..1108092)       hypothetical protein; COO54_05315                                                    N/A                 SalmonellaentericasubspentericaMQIFSDWHLPASDIPARPVQTQPDNSRLVHRFFSAMNQERLVLVLVLVLALALESQRPFETLQEPFRNRLIYPVQTLI
1108140..1108346                   PHAGE_Shigel_POCJ13_NC_025434: primosomal protein I; COO54_05320; phage(gi725949717)     2.55e-20            SalmonellaentericasubspentericaMLDGVRRYVAYLGSTHKAGSEFVQQAATFFGPDRHFENHWDIPVRGGSGMPGIPVSPPDKTIPPGFRG
1108353..1109105                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage DNA replication protein; DnaC homolog; COO54_05325; phage(gi169257254)     1.42e-98            SalmonellaentericasubspentericaMKNIADSGILARIRKLAPQSAERAAPFRTPEEWREWQLAEGRRSCEEIDRQNRQARAEKIFGRAGIQRLHRGCSFANYRIQNDGQRHALSQAKSIAGELDTGCTNFVFSGNPGTGKNHLAAAIGNRLMNAGRSVIVITVADVMSALHASYDDGKSGEKFLRELCGVDLLILDEVGVQRETRNEQVTLNQIIDRRTASLRSVGMLTNLNHEALTNLAGQRVMDRMTMNGGRWVNFDWGSWRPNVSYLRTVK
1109123..1109500                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; COO54_05330; phage(gi169257253)     2.33e-05            SalmonellaentericasubspentericaMSRNYTLAQKAEIQKRLTELVRTHGRMTFGELRKITGLTIFTARHYLEKAESCGDLYQAGRSGIFPSEQAFLLWKQKREDARITRFLKTPEGAVSSYDRTRNVICTECRNSVTMQRVLSVYRART
1109803..1110309                   hypothetical protein; COO54_05335                                                    N/A                 SalmonellaentericasubspentericaMIKFQDFRKRYSEVLKVEDEEKKSFQKVAGMIVRHFESSLDLEYSQYPVTFSGNPAENNILLSYVFIVTEKGGRHVELKALRPDKKGALSFYVCLTVDKSTISYPKRTLYARLSLRCNGDGFTVTVGEEALETDLSKYPTEAELAAISEATKHVMLIELGSDAPKRKY
1110844..1111093                   PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; COO54_05340; phage(gi423262436)     4.49e-07            SalmonellaentericasubspentericaMLKFVIYGDTVKNLNKTFTCKYAVIRRDDMTVIAEMDFFPDCTRSLMYRDGRYVRFLPLLQNDIMGSDTHYADYQGRLSIA
1111157..1111756                   PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; COO54_05345; phage(gi169257248)     3.87e-71            SalmonellaentericasubspentericaMAHLQLVKQTSSGILLPATPESGDFLRSVKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPTGGAVTSREQKLISGFVNFLCDSAGQEYTPALNDAAEQYLHKIAVNRTSDVALLKSFDAFREWVTVQAGFYTEHFYPDGSRGRRAKSIAFASMDETEFQQVYKAVLNVLWNWILFRKFSSPEEVENVAAHLLEFA
1111753..1111947                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; COO54_05350; phage(gi169257247)     2.84e-16            SalmonellaentericasubspentericaMKMTWFQHPVCTTEEADELVKQYRRRGVKTERSLNHDCIHWTVSALLPEFDHVPERRRKCSYLK
1111972..1112238                   PHAGE_Escher_HK639_NC_016158: hypothetical protein; COO54_05355; phage(gi356870664)     2.19e-41            SalmonellaentericasubspentericaMAAVGQIEQCVLCGRWGTQVAHRNELKGMGMKTDDCATAAICQECHHEIDNGSHLSREERRCLMNRAIVLTVIKLARCGLITPATIKG
1112248..1112610                   PHAGE_Entero_BP_4795_NC_004813: putative antitermination protein Q; COO54_05360; phage(gi157166023)     7.43e-68            SalmonellaentericasubspentericaMRDIHKILELWGAWVANNHEDVVWSHIAAGFKGLIPSKVKFRPQCCDDDAMIICGCMARLNKNNSDLHDLLMDYYVMGMTFMMLARKHGCSDCRIGRLLQKAEGIIDGMLMMLDIRLEME
complement(1112731..1114788)       SET domain-containing protein-lysine N-methyltransferase; COO54_05365                N/A                 SalmonellaentericasubspentericaMRGTGAVIHFRPPTDSSIPSPDLSGRWNSIRDWFSLPVQDEAAQCFRVFYQPDEATSPSDRLKNFLKLKALASPGRQDNFTTERILGTGETICMIASGKNSDFPPVTLHLSDQEWHMTQSQEETADCTVLPLSADNPAATTAEESAGASRKGSRITNTQIQAWRDLSPEAKREAGGWKTWAQSQRISISGAKQYLTNTGLTSRGVERLQPPGEKGSSITNAQIQAWRDLPQDAKLEAGGWMKWAQAQGINIKSAGTFLTNSALTPLGTDRLKPPEERGSPITNAQIRTWRDLPQEAKRKAGGWMKWAQALGIDIGSASACLTNTDLTPRGGVRLQPPGERGSPITEAQLLAWLNMSPEEHRAAGGWATWAQTQGISYISARKYLAPIDREIPSSGTSRPPPSATVTSDSPRASTSAATGDEITVSVSEKRSLPSTKEDISAPPAKQIKEEEDDVTWRTHQINNNLPILQHWRDPTISVMAQAEGRIETLQVTRWGPLFNLLSRQTKARINQDIRWFLQNEGKHDARMNAMMSVAIPLDDSDGYRGRTVYARTDLAAFTVLGPYSGRLLDSEKVRCEYEKEYGREAGNYYFATRSQERLVSAWPEGNILSLINSPVFTHRTAETEARQNVSTVLVGKNINFYVTTRDISAGEELWFDYGPDYRHFESGEALRSASVKEEPSSPEEG
1115146..1115334                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; COO54_05370; phage(gi169257242)     1.65e-30            SalmonellaentericasubspentericaMKEGYYWIQHVGVVQVAYYTNDTVDDLESGQVIVGVWHLTRGDDICHNGEAEVLSGPLQPPA
1115538..1115840                   PHAGE_Bacter_APSE_2_NC_011551: phage 21-like group II holin; COO54_05375; phage(gi212499716)     2.54e-07            SalmonellaentericasubspentericaMDKHTTWLAYIWALISGICAQWTLNDYGALIGIVLGIGTFLVNKHYKKKSEQAQARQAAAMEERNRLIARILEKNDHDSTLKMLAVSEMPEGNDGVKDKS
1115818..1116357                   PHAGE_Entero_mEp460_NC_019716: endolysin; COO54_05380; phage(gi428782372)            1.19e-95            SalmonellaentericasubspentericaMALRTKVKYGLSAAMLALIATGASAPQLLDQFLQEREGNTLVAVRDNGGVWSVCRGVTRIDGKPVVKGQRLTQSQCDHYNAIERDKALAWVNKNIHVPLTGPQKVGIASFCPYNIGPGKCLPSTFYRKLNAGDRKGACAEIRRWVYDGGKDCHNRENQCYGQVIRRDQESALACWGIEQ
1116675..1117130                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage lysis protein; Rz; COO54_05385; phage(gi169257238)     8.27e-74            SalmonellaentericasubspentericaMTTGVIVSLLILAAALGWTTSHYHGNAVKYKDQRDTVTHNLKMANETISDMQTRQRDVAALDAKYTKELADAQNRNTDLQRRLAAGSRVRVEGSCTVPTTTKTASTRRVGNAATVELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK
complement(1117357..1117758)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; COO54_05390; phage(gi169257237)     9.57e-91            SalmonellaentericasubspentericaMKFKSIAKTVFLFALLTSAGFATGKNVNVEFDKGQNSVRYSGVIKGYDYDTYNFQARKGQKVHVSISNEGADTYLFGPGISDSVDLSRYSSELDDNGQYTLPASGKYELRVLQTRNEARKNKAKKYSVNIQIK
1118045..1118590                   PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; small terminase subunit; Lambda Nu1 homolog; COO54_05395; phage(gi169257236)     3.02e-115           SalmonellaentericasubspentericaMNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWYAERDASIENEKLRKEVDDLRAAAESDLNPGTIDYERYRLTKAQADAQELKNAEREGLVLETELFTYILQRVAQEIAGILSRIPLVLQRKYPDLCQSHIDVVRTEIARASGRAATIADVEKWTDDFRRAQGE
1118562..1120745                   PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; large terminase subunit; Lambda gpA homolog; COO54_05400; phage(gi169257235)     0.0                 SalmonellaentericasubspentericaMISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKESSYTPGKWETLPFQVAIMNAMGYELIRVVNLIKSARVGYTKMLLGVEGYFIEHKSRNSLLFQPTDSSAEDFMKSHVEPTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVKGSCQIEKAANESAHFMRFHVPCPHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEHNGCVIRQSELDQKAGRWICDNTGMWTRDGLAYFSASGEEVPPPRSITFHIWTAYSPFTTWIQIIYDWLDALKDPNGVKTFMNKLAGKQPLDETLTALSGKSVDGLIEYVGLRETINRAADALQKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGALPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILCLTGIGDGEILIGWRGVNGAPASAYIRSHRDTADAEWSEWAMFYTSLNPPPDSYPVGVAIAWTSDATPAGYALMQGQLFDKSAYPLLAIAYPSGIIPDMRGWTIKGKPTSGRAVLSQEMDGNKSHSHTARAQDTDLGTKTTSSFDCGTKLTNTMGNHTHQFGGYINSYRGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYNGGRMWSGPPGQRRPANEAGVGKFQ
1120717..1121037                   PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical protein; contains pfam01661, Macro, Macro domain; COO54_05405; phage(gi169257213)     2.18e-64            SalmonellaentericasubspentericaMKLAWESFSNPPKVINWQYASARQNAVFNTTAYCPSKTLCPNARTEYIGFGDYRTYCKKSGNTCISPRHQVDDIYIGSHNHAVSLSPNFHGKHLKPEYLSGVKNDV
1121027..1121611                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage side tail fiber assembly factor & structural component; Lambda gpTfa homolog; COO54_05410; phage(gi169257212)     7.36e-123           SalmonellaentericasubspentericaMTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLSANCTDIAPPDIPSSYIEVFDSEIQTWSLHEDHRGETVYDTTTGNQVYISDLGPLPENVTSVSPGGGYKKWDSKAQVWVNDEAAEAAARLREAEGTKNRRLQIASEKIAPLQDAVDLDGATDKEKASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
complement(1121708..1121908)       PHAGE_Phage_Gifsy_1_NC_010392: PagK-like protein; COO54_05415; phage(gi169257211)     4.03e-41            SalmonellaentericasubspentericaMKHVKSVFLAMVLILPSSLYPALTIAADSQDHKKEETIKPMPQKWCNLWPAGISFPEDWFKMCRGY
complement(1122099..1122215)       PHAGE_Salmon_SEN34_NC_028699: putative tail assembly chaperone; COO54_05420; phage(gi966201445)     2.99e-06            SalmonellaentericasubspentericaMWLAYKNEVKLIDITNTPDNVNWPVPPGERASHDLKST
1122478..1122603                   arsenic transporter; COO54_05425                                                     N/A                 SalmonellaentericasubspentericaMFANADSELILTPIIIAVLLAPGFSKSTTLAILHFFFRREK
1122820..1123967                   PROPHAGE_Escher_CFT073: transposase insF; COO54_05430; phage(gi26250329)             0.0                 SalmonellaentericasubspentericaMSGKRYPEEFKIEAVKQVIDRGHSVSSVATRLDITTHSLYAWIKKYGPESSTHKEQSDAQSEIRRLQKELKRVTDERDIFKKSRGVLRKAVRLRYAFIRDNTCCWPVRLLCRVLDVHPSGFYSWLQQPHSQRHQADLRLAGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPQKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSDQMSPTEYENQYYQRLRSV
1125854..1125866                   attR                                                                                 N/A                 TCACAAACTGGAA

#### region 2 ####
complement(1777652..1777929)       PHAGE_Salmon_SJ46_NC_031129: membrane-associated initiation of head vertex; COO54_08925; phage(gi100034)     2.48e-05            SalmonellaentericasubspentericaMDQQKRLLATFHLKSLDFSGASDEATFTAIRWPLLPQEFTGYRYSCSYQQYCALSRTFLSRPVAWSSTWQSSSTSLRLIFCFVALFYYAGA
complement(1778084..1779208)       DUF3626 domain-containing protein; COO54_08930                                       N/A                 SalmonellaentericasubspentericaMLKPICYSGSVKVPEYLETDKEKNVGHTPLSSDIQQVKNVVEDVPPFPESRAARGSVSAAYRLSFDEVFCGLSNEERKKVYGRLFGKQVLAHIHSRCQRDADIIREKALRRISRECGAEIDCALLLNKMVDVLQNARLTINFNAAKIDFVSLLKNKEYLNSYALGCRPGDLPAYNVGRDSVETKAFELEKLADSPYAPYGQTGGFSVAYTPNSRTFSPTSRPIYAALDFLNGKNGGASAYGKSFFELNDNVKTNCTFSPFDTYGHRFGLDTSKLSTFWHMENLIASCQNDFFGYNCFKSLVKMAKGEKFLAHSNYGTGYEGNYIEAHIHGDVCLFRDIKHVYLSLQENSYSKSQLYDYAKQINQALNRDCIILY
1779602..1779617                   attL                                                                                 N/A                 TAATAAAAACGGGAAC
complement(1779655..1779867)       isocitrate dehydrogenase; COO54_08935                                                N/A                 SalmonellaentericasubspentericaMIISTLSNGWYVFGNVMLRHMQWFEAADLIVKGMEGAIAAKTVTYDFERLMEGAKLLKCSEFGDAIIANM
1780121..1780792                   PHAGE_Pseudo_F116_NC_006552: hypothetical protein; COO54_08940; phage(gi56692976)     1.84e-51            SalmonellaentericasubspentericaMCGRFAQAQTREEYLAYLADEADRNIAYDPQPIGRYNVAPGTKVLLLSERDEQLHLDLVFWGYAPGWWDKAPLINTRVETASSSRMFKPLWQHGRTICFADGWFEWKKEGNKKQPYFIRRKDGKPIFMAAIGSTPFERGDDAEGFLIVTSAADKGLVDIHDRRPLVLSPEAAREWMRQGISGKEVEEIITAGAVPTDKFTWHAVTRAIGNVKNQGAELIKPIT
complement(1780785..1780997)       PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; COO54_08945; phage(gi399528790)     3.08e-28            SalmonellaentericasubspentericaGVAQSHHLNNGSRLGAGSEKLMEVLDQLNAKDGKGTLYFAGQGIPQQWAMKREMLSPRYTTRFSDLLVVR
1781256..1782263                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; COO54_08950; phage(gi23505470)     0.0                 SalmonellaentericasubspentericaMFSRVRSFISCQNYSHTATPAITLPSSGSANFAGVEYPLLPLDQHTPLLFQWFERNPGRFGENQVPIINTQQNPYLNNIINAAIIEKERIIGILVDGKFSAGQKKAFTALEKQYENIKVIYNSDLDYSIYDKKLSDIYLENIAKMEAQPENDRDEYLLSEIKKSLNSVLKNNPEETIVTYHDKSSGHIRFDFYRNLFLLKGSDAFLEAGKRGCHHLQPGGGCIYLDADMLLTGKLGTIYLPDGIAVHVSRKDNRVSIENGIIAVNRREHPALKKGLEIMHSKPYGDPYVDGLGGGLRHYFNCSILHNYEEFCNFIEFKHENIFMDTSSLTISSWR
complement(1782546..1782947)       PHAGE_Salmon_SJ46_NC_031129: replication and recombination DNA helicase; COO54_08955; phage(gi100033)     3.44e-82            SalmonellaentericasubspentericaMSEYYYSFKEKGFFWQPDTESDNSPDDLIPLTDEYYRELMQGQMDGKYIEHRKGGPVLVEHREYTPEELVAQAEARKAELLAEAESVIAPLARAVKLKIATDEEIKRLEAWELYSVMVNRVDTANPDWPDIPR
complement(1782954..1783253)       PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; COO54_08960; phage(gi100032)      5.89e-46            SalmonellaentericasubspentericaFARKNTGSIQDWGWILDDSTGFIMQWGTLGNSNGTYNFPRAFPVGCFAVFVTNTNAQGTQVDNAFGYPVSNSQFFAATKSSGMANLVNNFPVAWLALGR
complement(1783273..1784420)       PROPHAGE_Escher_CFT073: transposase insF; COO54_08965; phage(gi26250329)             0.0                 SalmonellaentericasubspentericaMSGKRYPEEFKIEAVKQVIDRGHSVSSVATRLDITTHSLYAWIKKYGPESSTHKEQSDAQSEIRRLQKELKRVTDERDIFKKSRGVLRKAVRLRYAFIRDNTCCWPVRLLCRVLDVHPSGFYSWLQQPHSQRHQADLRLAGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPQKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSDQMSPTEYENQYYQRLRSV
complement(1784561..1785064)       hypothetical protein; COO54_08970                                                    N/A                 SalmonellaentericasubspentericaMRRILATAAALCLGGCITVYGPVKTGGQQQQGSQTGQQPGMSEQISTSFIGNRKPDELLNAVALYFREKAITASVNDQTTGIIAGTGDDPELSSLYLDCSLLPQTQNIQEHYRIVAQVWSAGEGSNVSVMVTGTAGLDTADGNDKVKPVECKSTGIFEKDLLERLGK
complement(1785167..1785709)       PHAGE_Entero_Arya_NC_031048: hypothetical protein; COO54_08975; phage(gi100064)      4.56e-20            SalmonellaentericasubspentericaMIVLLKLLKKFWKPLAEILLVAFLLCAGAYWCYSRGYQKADSSWKFQWAQRDLTDATDALQQEVTERAKEQRRQHAADEERKRADEELAKIQADADAAERARSGLQQQLAAVQRQLAGSETGRLSALAAAGQAKAETGILLAKLLGEADDLAGKFAKEADERYVAGSTCERTWDKVTGQN
complement(1785706..1786320)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_08980; phage(gi100131)     2.68e-93            SalmonellaentericasubspentericaMNQQQFQQAAGISAGLSARWYPHITAAMSEFGITAPLDQAMFIAQTGHESAGFTVLKESFNYSVEALKKTFGKRLTTYQCEMLGRIDGRQVAHQPQIANLVYGGRMGNKDAGDGWKYRGRGLIQITGLENYTRCGVALKLDLVANPGQLELERHAARSAAWFFVIKGCLKYSGDMVRVTQIINGGQNGIGDRRERFEKAKSVLI
complement(1786320..1786601)       PHAGE_Entero_mEp390_NC_019721: putative holin; COO54_08985; phage(gi428782713)       2.67e-49            SalmonellaentericasubspentericaMVANDPSAVLNAVICGVIVIVLMFYRRGDATHRPLISLLAYVMVLVYASVPFRFVFGLYESSHWLVVMVNILICAAVLWARGNVARLVDALRH
complement(1786588..1786977)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_08990; phage(gi100130)     1.26e-44            SalmonellaentericasubspentericaMSEPVSSATVLAGGLMGASVFGLATGTDYGVVFGAFAGAVFYVATATNIGRIRLVAYFITSFIVGVLGAGLIGTKLAAITHYEKPLDALGAVIISAMCIKFLTFLNSQDLNSLFSILSRIRGGGADGSK
complement(1787066..1787638)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; COO54_08995; phage(gi526244683)     1.53e-12            SalmonellaentericasubspentericaMKLFSPLSYLRIKHEEKDWYDYKIPAAVSLIVTIVYYFHASKISLIETNGLLLQVNGLLQVLIGFYIAALAAVSTFSSSSIDEVMAGVPPTLVEKFRGQKLTVELTRRRFVCYLFGYLALVSFMLFCLGMISILIGKPFHLWLLTFCSPDAILWLKTVFVGVYIFILMNIITTTLLGLYFLAVRFHQSSL
complement(1787651..1788724)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; COO54_09000; phage(gi526244684)     2.90e-05            SalmonellaentericasubspentericaMDKILPTMGFVCLSLISLKNPPPSGFFICDHFIFCLAKLLYGQELKLSGDIVLSNNERWVSFFDFAFTPTHAAAPSIPIEDILKKLKVLVSSGNAVKLYNHRSRALRISEMKYSIGDSQATLLIQLCDKNGSDPVFGELTTGNLRVEPKLAGEGIAVSCHIVISTDVVKNTADHHKTLVESVPGISKSVLEPFLNAMLREAFAGCEFKNPATKGMCQHRPKLEIYSHGSQTLMDALKGAKIHNVKLVSTRRKGGLDQTAYTELSERSVKYKIIRQPPLKDKERLLEILRKKGQQSGYTKVSISYSKDGKQASLDLDRNEDAATKLFTKSERVILGNLINQCESTVHLQLETKMIGLL
complement(1788774..1789526)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09005; phage(gi100128)     8.81e-176           SalmonellaentericasubspentericaMNLEALPKYYSPKSPKLSDDAPATTSESLTITDVMAAQGMVQSKAPLGFALFLAKVGIQNPDFAIEGLIHYAVALDNPTLNKLSEETRLQIVPYLVNFAFADYSRSAASKARCEHCAGTGFHHVLREVVKHSRNGEPVIKEEWEKELCQHCHGKGEVSTVCRGCKGKGIVLDEKRTRLHGAPVYKICGRCNGNRFSRLPTTLARHHVQKLVPDLTDYQWYKGYADVIDKLVTKCWQEEAYAEAQLRKVTR
complement(1789540..1790529)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09010; phage(gi100127)     0.0                 SalmonellaentericasubspentericaMRALLTPEIAPRMGVVLFRPGSELMPLFMQGRVLLEPEPEQYSSFACGAVPAVSQPLADDPAVRDVFRNESVIYRAGGLDSLESWLLRGNGCQWPHSDWHSEQMTTMRHAPGAIRLCWHCDNLLREQFTERLESIAVENTTKWVLSVVCRDLGFDDMHAVTLPELCWWMVRNDLAEVLPESAARKALRMPKAIVQSATRESEIVPSVPATSIVQDKAKKVLALRVDPESPESFMLRPKRRRWINERYTRWVKSQPCACCGKQADDPHHLIGHGQGGMGTKAHDLFVLPLCRTHHNELHADTVAFEEKYGSQLELIFRFIDRALAIGVLA
complement(1790537..1791442)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09015; phage(gi100126)     0.0                 SalmonellaentericasubspentericaMKQGRVQPPENGERSMNNLMVIDGIEVRRDVHGRYCLNDLHRAAGGDQKYRPKYWLDNKQTRELIEQLFTEGGFPPSEQNQSVSFFQGGSDTRSLVRAPVNTVRGGAEQGTYVCKELVFAYAMWISPSFHLKVIRTFDRITSAPQTSSGMAADKMQAGVILLGFMRKELNLSNSSVLGACQKLQEAVGLPNLAPQYAIDAPAGAPDGSSRPTLALSALLKQHGIRMTANQAYQQLAKLGVVEHRERYSRSAINGIKKFWSLTAKGCMFGKNITSPANPRETQPHFFESKFPELLKLLDTVH
complement(1791414..1791803)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09020; phage(gi100125)     5.48e-81            SalmonellaentericasubspentericaMKLTLPFPPSVNTYWRHPNKGPFAGKSLISVAGRKFRSATCAAIIEQLRRLPKPTSTHAAVEIILYPPDKRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVFPKGKVEITITKFETGAGAAA
complement(1791800..1792453)       PHAGE_Salmon_118970_sal3_NC_031940: cytosine-specific methyltransferase; COO54_09025; phage(gi100124)     1.23e-111           SalmonellaentericasubspentericaMSNKYCQALAELRSKSAHELKEVGDQWRTPDNIYWGINAMFGPFVLDLFSDDENAKCEDYYTAEDNALAHDWADRLAELNGAAFGNPPYSRASQHEGQYITGMRYIMRHTSAMRDKGGRYVFLIKAATSEVWWPEDADHIAFIRGRIGFELPAWFIPKDEKQVPTGAFFAGAIAVFDKTWKGPAISYIGRDELEAGGEAFLAQIHREAKRLVGKVAV
complement(1792453..1792977)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09030; phage(gi100123)     2.76e-110           SalmonellaentericasubspentericaMWITARSRQGSGGDMSLMGDVQKFIESHPGCTSSDIANAFADFPRKSVLQSTSKLRQCGRIAHRFEGKTRRHFALETDIQPDQEPDIETKPVRSCYVGTNDPQVIMHLIRQAETLESGGLFRRAATVWMEAFRESHIQSERSAFLARRERCLRKSRKYVASGSEWYLSGNYVGS
complement(1792937..1793911)       PHAGE_Shigel_SfIV_NC_022749: replication protein; COO54_09035; phage(gi557307567)     0.0                 SalmonellaentericasubspentericaMSTKLTGYVWDACAASGMKLSSVAIMARLADFSNDEGVCWPSIETISRQLGAGVSTVRTAIAKLEADGWLSRKARRQGNRNASNVYQLNVAKLQAAAFAHLSDPDQSKSDPSESDASKSDASKSDASKSDPSKSGKNGGFDPSESGGDPSVKSKQDPQDNKTLSCPDASQPDQQVTDQEFLSRHPDAAVFSSKKRQWGTQDDLTCAQWIWKKIIALYEQAAESDGELVRPKEPNWTAWANEIRLMCAQDGRTHKQICEMYSRVSRDPFWCRNILSPSKLREKWDELSLRLSAPIGGRFENREDPMFKSSYGNVDYSQIPTGFRG
complement(1793908..1794132)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09040; phage(gi100121)     1.47e-50            SalmonellaentericasubspentericaMIRNIFKRFTSQRFHCPRPGQWYSTPEGYVLRISLVDRECQKVVCEPLGRNYRVNMPLIAFRSGKNMKHLGGAA
complement(1794129..1795283)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09045; phage(gi100057)     0.0                 SalmonellaentericasubspentericaMNSLTVNNRLSQQPGMYEYRPLRHECRLPNSLVVRNHRENSLTVGDESCRSLTAGFGMEGDFMSMSFAGNQKLSALSICARATRMSVLARCGNSGVILLSVKRQEHIDSAIPGRYTVQAPYKAGAGIGVLEIHTATNDAPASFLLSQLGYIQIMVGWVGAPQGAPVSVCAGYANPAQFTTSEIGVSGGGRFLPHTEAAIMATVPTLAQPEIRIINGQAVTSSLAVADYFIKRHADVIRKIESLECSTLFRQRNFAFTSISINQPNGGTRKLPCYQITRDGFAFLAMGFTGKRAAQFKEAYINAFNQMEKQLSKPSVLSDAAHNASVLYSYISSIHQVWLQQLYPMLEKAESPLAVSLHDRINDAAALASLINMTMNRSEVRGRK
complement(1795280..1795834)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09050; phage(gi100118)     2.05e-134           SalmonellaentericasubspentericaMGHEPEWKVEKQPRWLVAAIKKTISSLHGGYEEAAEWLDVTKDALFNRLRTGGDQIFPIGWALVLQRAGGTYHLAHSVARASGGVFVPLADMEEVDNADINQRLLEAIEQITSYSQQIRVAIEDGVIEPHEKVVIDEELYQAIAKLQQHSTLVYRVFCAPEKGDARECAAPGAVASNFMEKTNA
complement(1795863..1796087)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09055; phage(gi100117)     5.22e-49            SalmonellaentericasubspentericaMQSPLRKLRKSHGYTLQHVAKGVQVDPATLSRVERCEQAPSTELAERLAQFYAGEISEMQILYPNRYQLSDSAI
complement(1796026..1796211)       amino acid permease; COO54_09060                                                     N/A                 SalmonellaentericasubspentericaMSDTVSYIHAFITLIFCALCKSTCASLLYEITCDIRKRRRFYAITIEKIAEIAWLYVTARR
1796185..1796880                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09065; phage(gi100116)     7.22e-168           SalmonellaentericasubspentericaMNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELFTSDSKGNTVCKYSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHAIEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPDKLLVISDNTNYREWSITKDNECRFGVFGKVLISQTQSLKRHN
1797089..1797397                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; COO54_09070; phage(gi401817573)     1.61e-14            SalmonellaentericasubspentericaMNEQDLKHVIALLLEDAKRLQQIEPNAGTEARILLAKQALKTCGAQDPDRTEFMNFMANTIPLRPCKGDGVSRVYHDTMVKALRIELERLRSRIAINEIVTN
complement(1797335..1797673)       hypothetical protein; COO54_09075                                                    N/A                 SalmonellaentericasubspentericaMNQFYVHVRLFEATAEQTKKFEELMLNFHYRKTTKDDDGDCRLIPGGYILNSTMNCNNIVNQTLSIANSVGVNANIFVCKFEQSAFLLPSAALVGNDFVYRDPTPEPFKLDS
complement(1797708..1798112)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09080; phage(gi100114)     6.26e-30            SalmonellaentericasubspentericaMSPSRGDALFCCVKRSASRNTVAFLLLLEEPDADKTSHSNNVVVGLSLRRMVNLTTRCPTGYKWRKTRHTYRRAISRITTTKRALPVSELNGPFLCPTLLTKQDCLESNQHLCLARQYSHRCVPVFSPHQARWY
1798210..1798581                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09085; phage(gi100113)     9.61e-84            SalmonellaentericasubspentericaMNDDRMTVVPDFLSELDAGVFMNKIAAALNTVGLGVLNNGNKGKVVLTFDFERMGNSVEEKRVKIKHKLQYSTPTPRGKASEEDTTETPMWVNKGGKLTILQEDQGQLFSIKGTTDGKLKAAQ
1798639..1799466                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09090; phage(gi100112)     0.0                 SalmonellaentericasubspentericaMSQLDSGTFQQVKDLVLSGYHLNDIQGLACPTALLPAGTGVESLERFALERFRFRGAMTTTSIEDFVRYSKGYASATEKARCFIDADHMTARSVFNIGTLDNPGHADNVASVTLKQTAPFRALLQINGERLKQKQIAEWLEDWSDYLLAFDADGNTMQISQAAQAVRRITIQQATQQDHEDGDFSGKKSLMQSVEASSKDVMPVAFEFKCVPYEGLGERAFSLRNSLLTGDEPRFVLRIVQLEAQEEAIASEFRDLLISKFDGESVETFIGNFKA
1799602..1800141                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; COO54_09095; phage(gi100111)     2.57e-129           SalmonellaentericasubspentericaMSFIQTLSGKQFDYLSATIDDIDIEDIAVALSNICRFSGHLPEFYSVAQHSVLCSQLVSPEFAFEALMHDAAEAYCQDIPAPLKALLPDYREIEKRTDQLIRFKFGLPLEEASVVKYADLTMLATERRDLDIDDSIPWVILEGIPPTDLFEIYPLRPGQAFGLFMARFNELMELRQCAA
1800284..1800520                   excisionase; COO54_09100                                                             N/A                 SalmonellaentericasubspentericaMSRMIPLLDWANEEFGAQAPSERILKKYAKGKMMIPPAVKVGRYWMVDRNARFVGTLAEPKIPANASPRLQRIIADGC
1800510..1801652                   PHAGE_Pseudo_phi2_NC_030931: protector from prophage-induced early lysis; COO54_09105; phage(gi100001)     2.74e-73            SalmonellaentericasubspentericaMAARPRSHKISIPNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVNDRLARMKGRRTDITVTEWIDKYIEIQNEWLKHRELRPNSYRQKAKPVRLFREHCGMQYLKDISALDISEITDAVKAEGHNRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNKVTRQRLSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQEKTGSRLAIPLDLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSLTSTFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDTQKLLGHKSRKMTDKYNDDRGKDWVIVNTKTG
1801713..1801728                   attR                                                                                 N/A                 TAATAAAAACGGGAAC
complement(1801766..1803016)       isocitrate dehydrogenase (NADP(+)); COO54_09110                                      N/A                 SalmonellaentericasubspentericaMESKVVVPVEGKKITLQNGKLNVPENPIIPFIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIRDYRVAIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAITNDRDSVTLVHKGNIMKFTEGAFKDWGYQLARDEFGGELIDGGPWLKIKNPNTGKEIVVKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMQWFEAADLIVKGMEGAIAAKTVTYDFERLMDGAKLLKCSEFGDAIIENM
1803188..1803853                   23S rRNA pseudouridine(2457) synthase RluE; COO54_09115                              N/A                 SalmonellaentericasubspentericaMRQLISSENTMQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLFNKPYDVLPQFTDEAGRRTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPGKRTGKIYYVQVEGIPDNEALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTSWLKVTLYEGRNRQVRRMTAHVGHPTLRLIRYSMGDYTLSGLDNGQWREIAQEKDR
1803850..1804179                   PHAGE_Aeromo_CC2_NC_019538: hypothetical protein; COO54_09120; phage(gi423261545)     1.09e-09            SalmonellaentericasubspentericaMKRLLIAFALLTPLSVNAASFDCQKAQAADEKAICAHLTLNDKDVEMHTKYQFLKGLFAMGSRGALQDAQQSWLKQRQQCKADVTCLTKAYNERLKQLDAIYDHIDKPL
1804191..1804652                   PHAGE_Sphing_Lacusarx_NC_041927: hypothetical protein; COO54_09125; phage(gi100136)     5.35e-07            SalmonellaentericasubspentericaMFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETLAQAAARELWEETGITAQPQYFIRMHQWVAPDKTPFLRFLFAIKLDHICATTPHDNDIDCCHWVSADEILNAPNLRSPLVAESIRSYQTGQCYPLSIVGEFNWPFTEGVK

#### region 3 ####
2595004..2595017                   attL                                                                                 N/A                 TTCCCGCTTAACGT
2601858..2603005                   PROPHAGE_Escher_CFT073: transposase insF; COO54_13175; phage(gi26250329)             0.0                 SalmonellaentericasubspentericaMSGKRYPEEFKIEAVKQVIDRGHSVSSVATRLDITTHSLYAWIKKYGPESSTHKEQSDAQSEIRRLQKELKRVTDERDIFKKSRGVLRKAVRLRYAFIRDNTCCWPVRLLCRVLDVHPSGFYSWLQQPHSQRHQADLRLAGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPQKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSDQMSPTEYENQYYQRLRSV
complement(2603023..2603421)       PHAGE_Salmon_vB_SemP_Emek_NC_018275: DNA replication protein; COO54_13180; phage(gi399498840)     8.63e-94            SalmonellaentericasubspentericaMSNLATVTPIKPHLEVVEHRVAELDDGYTRTANTLLEAVMLSGLTQHQLLIVMAVWRKTYGYNKKIDWIGNEQFAELTGMAPTKCSTAKNELIRMGVLTQVGRQVGMNKNISEWKTKVNGFGKTFTKSVKLTF
complement(2603414..2603560)       PHAGE_Entero_UAB_Phi20_NC_031019: protector from prophage-induced early lysis; COO54_13185; phage(gi100001)     2.51e-27            SalmonellaentericasubspentericaMPKQLSPDQDKLHKNILRDRFLSSFKQPGRFRAELEKVKLILKRKGHE
complement(2603595..2603876)       PHAGE_Salmon_ST64T_NC_004348: transcriptional activator; COO54_13190; phage(gi24371559)     1.45e-62            SalmonellaentericasubspentericaMNVVATKSKKAARIESTLLNKLAMMGQKTFAKAMGVPEYQVSRWKNGFFSQVSMMLAVLEYGIEDEEMAELTRRLATYLTKEKAPKNGEFFEA
complement(2603987..2604202)       PHAGE_Salmon_ST64T_NC_004348: antirepressor protein; COO54_13195; phage(gi24371558)     1.15e-47            SalmonellaentericasubspentericaMSNLRKIRETMKVSQAVLAEKVGCTQGAIGHYESGRRHPDLRMCRQLVEALNSFGANVQLDDVFPPELNAA
2604321..2604983                   PHAGE_Salmon_ST64T_NC_004348: repressor protein; COO54_13200; phage(gi24371557)      1.46e-161           SalmonellaentericasubspentericaMKTPWNELAKARMKQIGLTQDKLAEALGKTQGAIGHWLNGRREPSIEDIAAIMKQLGLKELVLSSDGMVDYPDSNLNNVSSPRPHTEIRRFPLISWVSAGNWCEAVEPYQLREIEVWPETTAHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKYIVDAGQKYLKPLNPSYHMIPINGNCRIIGVVIEAKWQGL
2605126..2605235                   hypothetical protein; COO54_13205                                                    N/A                 SalmonellaentericasubspentericaHQQDAGSQTERQRSLTSMMRQSANRYQTRWVWVAGAG
2605338..2605670                   PHAGE_Salmon_ST64T_NC_004348: antitermination protein; COO54_13210; phage(gi24371556)     2.09e-63            SalmonellaentericasubspentericaMTVITYRKSTFAGNAKTRRHERRRKLAMERDTICNIIDSIFGCDAHDPSQEVKAKRIDRVTKAISLAGTRQKKVEVTAVKKNRIYYRDVNPLGNKIHAVQRMKLSSKPLI
2605703..2605903                   PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; COO54_13215; phage(gi24371555)     3.61e-36            SalmonellaentericasubspentericaMATTIDTNQWCSRFVKCKGCKLDAECMVKPEEMALVREDGKIVDKWAIRTTAMIARELGKQNNKAA
2605940..2606563                   PHAGE_Entero_mEp235_NC_019708: hypothetical protein; COO54_13220; phage(gi428781847)     7.90e-146           SalmonellaentericasubspentericaMLSIRLTTRMKEKIARNALIKSGVFTELEEVTKLKNQLALDARVIAFGGKKKTEEVDQLSSKLVAISEELEKLGCSFYSYDVRSTSIYLTVSGRMVGWHSYGKDGNGEDILLPTPTKDKCMFSAEHEITKRFDEICALQQKLEAKKKDIESNVWAALNSVTTVKRLIEVWPESKELLPKEEDKASTALPALRVEDLNKMIGLPSEAA
2606601..2606924                   hypothetical protein; COO54_13225                                                    N/A                 SalmonellaentericasubspentericaMKDLIVQRYNIVTVHSNGETFDDLREKPNGIFCYYREANESHKEILAEYSEPVNEELLDALQLALHAMNEMGDILNFHDLAEKSKVDELTPAFDKARAAISKALGEE
2607241..2607414                   PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; COO54_13230; phage(gi24371552)     4.80e-28            SalmonellaentericasubspentericaMENPTMTFAIAGGAVMGIAHLNESLLERITRKLRAGWKRLGEILNQPGVPRHDHYAC
2607395..2607583                   PHAGE_Salmon_vB_SosS_Oslo_NC_018279: Kil protein; COO54_13235; phage(gi399528802)     1.12e-40            SalmonellaentericasubspentericaMTITPVNGTILVQQGNREFNKLYEKVFPDTKQGMSDAYTWAAGIALGWDKWQDEEWEARHVA
2607713..2608330                   PHAGE_Entero_P22_NC_002371: Erf; COO54_13240; phage(gi9635505)                       6.40e-153           SalmonellaentericasubspentericaMSKEFYARLAEIQEHLNAPKNQYNSFGKYKYRSCEDILEGVKPLLKGLFLSISDEIVLIGDRYYVKATATITDGENSHSASAIAREEENKKGMDAAQVTGATSSYARKYCLNGLFGIDDAKDADTEEHKQQQNAAPAKQTKSSPSSPAPEQVLKAFSEYAATETDKKKLIERYQHDWQLLTGHDDEQTKCVQVMNIRINELKQVA
2608330..2608614                   PHAGE_Entero_P22_NC_002371: Abc1; COO54_13245; phage(gi9635504)                      1.70e-64            SalmonellaentericasubspentericaMRRLNITTAEMESVCGRMVACRAAEHLGLNINQFYYIAKKLSLKTAFIKPRWSDDEDKRMQTLISSGYTQRNVAKILGRSEESVKSRLSRLRKK
2608661..2608954                   PHAGE_Entero_P22_NC_002371: Abc2; COO54_13250; phage(gi9635503)                      1.16e-65            SalmonellaentericasubspentericaMPAPLYGADDPRRCSGNSVSEVLDKFRKNYDLIMSLPQETKEEKKFRHCIWLAEKEERERIYQTSIRPFRKATYTKFIEIDPRLRDYRSRYGAISND
2608965..2609135                   PHAGE_Entero_P22_NC_002371: hypothetical protein; COO54_13255; phage(gi9635502)      3.23e-34            SalmonellaentericasubspentericaMRGLAYNPDILPAELIIRHKIKPMPTREELLQRNSFPSINENKYLNAILRKDKCNR
2609123..2609443                   PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; COO54_13260; phage(gi24371547)     1.66e-12            SalmonellaentericasubspentericaMQQVKIYTASPSDLSPPVQSESFCVDMVLASDYAELEEKFMALAVENELARKAVQAFCDVVGDNTEVISEEVGRDGVLVILEAMKATGNTPATDAFLAEVRAQGVEM
2609584..2609829                   PHAGE_Entero_EcP1_NC_019485: hypothetical protein; COO54_13265; phage(gi418489320)     2.37e-19            SalmonellaentericasubspentericaMSNTAKLQLGFSPLSKTIMLAKMRDVEGGRLRVGNDRGRDVTNEAAQLVWQLVMAEGGEIGWELDDGSRMVLKAEKQEAAQ
2609826..2610791                   PHAGE_Salmon_epsilon15_NC_004775: Ead-like protein; COO54_13270; phage(gi30387424)     1.30e-161           SalmonellaentericasubspentericaMSNINKQALRERYSPKPVPKCHICGEEMTIQRISASRITYGCTGATYDDIGCHYAEGRSIADDHYEQSRVTVVDVSDPDVLALLDELDKKQQYIKLRDQENEDIALTVGKLRVELEAAERSIAEQSAIVAAAEKLVCCKGRYHSELNYRALAKLFGVITPDLPPLVHENVHYADAAEVEITALRQRIAELEKLETADKLQDSAFRDGLKAGFSYGQTDDQSGFAQCMSAYSNAGISVKQQEDSVDSDVGRNQPGMVVAVHIGAGDFVKVKGQVFEVEETDFDDHDVTLWFVGGNALKCAAGCPVEVVSAPVAAGIKVKGE
2610791..2611006                   hypothetical protein; COO54_13275                                                    N/A                 SalmonellaentericasubspentericaMVRTTRERMNNKHGHHYQRDGSIYICQYCGTAEHRNGNFWWAGRFSECEPPCGDDVAGQDAWFDAAESKGD
2611010..2611435                   PHAGE_Salmon_g341c_NC_013059: DNA Repair ATPase; COO54_13280; phage(gi255252706)     4.95e-85            SalmonellaentericasubspentericaMTTITKKQRAELRMKFGGRCAYCGCELPEKGWHADHVEAVLRKSEQCMKAAAKGIFKLKATGEFYRPEAERLENLFPACAPCNLLKASYSLEMFREQVSLQVERGRKSSMNFRTAERFGLIEAVEKPVVFWFEQYQEGVAV
2611741..2612022                   PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; COO54_13285; phage(gi24371542)     7.70e-49            SalmonellaentericasubspentericaNNYSGTCVQEYVKLERLQEALAGNSPVIPGGWISCSERMPDNDESKPIAIFTGKCLGQGMFVATYDDDGFFDYWEGMEIIGVSHWMQLPDPPL
2612119..2612298                   PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; COO54_13290; phage(gi24371541)     1.07e-36            SalmonellaentericasubspentericaMSCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDSKDAFGERGKNEFVRINKERKGNEKS
2612399..2613034                   PHAGE_Salmon_ST64T_NC_004348: Eac protein; COO54_13295; phage(gi24371540)            1.80e-137           SalmonellaentericasubspentericaMSGQSKYYDYYMVEGEDVKELIQSYDTINDQRNSILTTAAEKVGAIAWTTARSWGGEGGLLQSFVWEKGYEFPCQITIKREDFLDGKRVVIARGKGNTKEGRAYNKELDAIMHNANAKLKSLPEWNYYITNHYGIMRTGIGGQSGRGFGFVMLSTYGGKHPQRDDCLIFAIPNNKEERHGVVVIPDAFKKITYGQFYDIANAKEDEEETAE
2613037..2613387                   PHAGE_Salmon_ST64T_NC_004348: excisionase; COO54_13300; phage(gi24371539)            8.93e-82            SalmonellaentericasubspentericaMESHSLTLDEACAFLKISRPTATNWIRTGRLQATRKDPTKPKSPYLTTRQACIAALQSPLHTVQVSAGDDITEELKCHYSAEVKPGTPVSHCRTAKDLSSLLGQRTKGRPQSFMTS
2613759..2614427                   PHAGE_Salmon_ST64T_NC_004348: integrase; COO54_13305; phage(gi24371538)              5.29e-160           SalmonellaentericasubspentericaMLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKASSTKPDRTKSPVVRKMRYDANTAWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSIFDTSVPNMSHGKNKEGTNNT
2629263..2629276                   attR                                                                                 N/A                 TTCCCGCTTAACGT

#### region 4 ####
2757480..2757491                   attL                                                                                 N/A                 GCTTAATAACCT
complement(2757842..2758060)       PHAGE_Salmon_Fels_2_NC_010463: P2 gpOgr-like protein (acttivation of late gene expression); COO54_13980; phage(gi169936018)     2.36e-48            SalmonellaentericasubspentericaMMNCPECGHAAHTRSSFQVSATTKERYNQCQNINCGCTFVTHETFVRHIIKPNLISSAPPHPGKGGQGHMSF
complement(2758129..2759229)       PHAGE_Salmon_Fels_2_NC_010463: tail protein; COO54_13985; phage(gi169936019)         0.0                 SalmonellaentericasubspentericaMNVNSDLLNLNSKSPAFSITIEGKDVTTVMDARLMSLTLTDNRGFEADQLDLELDDADGLIALPRRGAVIQLALGWKGQPLFPKGAFTVDEIEHSGAPDRLTIRARSADFRETLNTRREKSWHQTTVGKVVKEIAARHNLKVALGKDLTDKALDHMDQTNESDASFLMKLARQYGAIASVKDGNLLFIRQGQGRTASGKQLPVITITRKAGDGHRFTLADRGAYTGVIASWLHTREPRKKETTRVKRRRKKTTTPKEPEAKQGDYLVGTDENVLVLNRTYANRSNAERAAKMQWERLQRGVASFSLLLAEGRADLYTEMPVKVTGFKQPIDDAEWTITTLTHSVSPDNGFTTSMELEVKIDDLEIE
complement(2759226..2759711)       PHAGE_Salmon_Fels_2_NC_010463: P2 gpU-like tail protein; COO54_13990; phage(gi169936020)     1.14e-113           SalmonellaentericasubspentericaMMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLGPDNDSLTLSGVLLPEVTGGRLSLLALEQMAELGKAWPLIEGSGTIYGMFVIESLSQTKTEFFASGMPRRIEFTITLKRVDESLSDMFGSLSDQLSNLQDSAASAIGGIKNTVGGLLQ
complement(2759719..2762514)       PHAGE_Salmon_Fels_2_NC_010463: P2 gpT-like tail protein; COO54_13995; phage(gi169936021)     0.0                 SalmonellaentericasubspentericaMSDNNLRLQVILNAVDKLTRPFRSAQASSKELAAAIQQSRARLKELDSQAGRIDGFRKASAQLAVTGNSLKAAREEAAKLATQFTATNRPTAAQARLLEQAKNRVTDLQGKYNGLRQSVQRQRLALNEAGLDTKKLSSAQRELRQNADETRQALDRQQKSLKRLGEQQARMNAVRDQYSRRLEVRDRIARAGATTTAAGVAMGAPVVAAVKSYASMEDAMKGVAKQINGLRDDNGNRTKQFYDMQDAIKAASEQLPMENGAIDYAALVEGGARMGVTNQDDPYEEQKRDLLAFASTAAKAATAFELPADELAEGLGKIAQLYKVPTRNIEQLGDALNYLDDNAMSKGGDIINVLQRMGGVADRLDFRKAAALGSTFLSLGAAPEIAASASNAMVRELSIATMQSKRFFEGMNLLQLNPAEIEKQMTTDAMGTIQRVLEKVNNLPQDKRLSAMTMIFGKEFGDDAAKLANNLPELQRQLKLTSGSGANGSMQKESDINKDSLSAQWLLVKTGAQNAFSSLGETLRQPLMDIMGMVKRVTGALRRWVEQNPVLAGTLMKVAAATAAITVGLGALAVAVAAVLGPLAVIRFGLSMLSVKALPSAAAAATRTGSVLSLLISGPLALLRVALFAVGSLLGALLSPVGLVVAALAGVALVIWKYWQPISAFLGGVVEGFKAAAAPISAAFEPLRPVFQWIGDRVQALWGWFNDLLTPVKSTSEELNSVAAMGRRFGEALAEGLNRVMHPLESLKSGVSWLLEKLGIVSKEAAKAKLPAQVTQQQSATVNSDGKVVLPLGGFPAYAGMYDTGGIIPRGQFGIVGENGPEIVNGPANVTSRRRTAALASVVAGVMGVAATPAEAAPLHPFSLPARACQPPLAKADSPPPVIRYEINAPIHIVAQPGQNAQDIAREVARQLDERERRARAKARSNFSDQGG
complement(2762507..2762626)       PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like protein; COO54_14000; phage(gi169936022)     6.43e-20            SalmonellaentericasubspentericaMADIATIFHWSPSITDVMPLTEVLEWRHKAIQRSGASDE
complement(2762641..2762943)       PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; COO54_14005; phage(gi169936023)     5.94e-63            SalmonellaentericasubspentericaMSDKLTEKTVQLDTPIMRGKTQITEIVLRKPQSGALRGTRLQAIMDMDVGAMMTVIPRISTPTLTAQEMAELNPADLTALSVEVVTFLLKKSVLAGLPTA
complement(2762998..2763513)       PHAGE_Salmon_Fels_2_NC_010463: major tail tube protein; COO54_14010; phage(gi169936024)     7.12e-121           SalmonellaentericasubspentericaMALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKFEKYRGGGMPGAVDVDMGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAVELVVRGRHKEVDSGEWKTGESSSTKVSSTNSYAKLTINGEVLYEVDLVNMIEIVDGVDLMEAHRNALGL
complement(2763523..2764695)       PHAGE_Salmon_Fels_2_NC_010463: major tail sheath protein; COO54_14015; phage(gi169936025)     0.0                 SalmonellaentericasubspentericaMAQDYHHGVRVVEINEGTRPITTVSTAIVGMVCTGDDADASVFPLNKPVLLTDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVAQGETEAETTSNIIGGVTSDGKKTGMKALLSAQSQLGIKPRILGVPGHDTQAVATELLGVAQSLRGFAYLAANGCKTVEEAIAYRENFSQREGMLIWPDFINFDTVLKADATAYASARALGLRAKIDEQIGWHKTLSNVGVNGVTGISADVFWDLQDPATDAGLLNKNDVTTLIRQDGFRFWGSRCLSDDPLFAFENYTRTAQVLADTMAEAHMWAVDGVLNPSLARDIIEGLRAKMRSLVNQGYLIGGDCWLDESVNDKDTLKDGKLTIDYDYTPVPPLENLMLRQRITDRYLVDFASRVAT
complement(2764798..2765016)       PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; COO54_14020; phage(gi169936026)        1.87e-39            SalmonellaentericasubspentericaMECELIVERTRAGLEVVRSKGRIGGRRPKLTPEQWAQAGRLLAAGETRHRVGLLFDVSISTLYKKFPVNQSR
2765231..2765953                   SPI-1 type III secretion system guanine nucleotide exchange factor SopE; COO54_14025     N/A                 SalmonellaentericasubspentericaMTKITLSPQNFRIQKQETTLLKEKSTEKNSLAKSILAVKNHFIELRSKLSERFISHKNTESSATHFHRGSASEGRAVLTNKVVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANKYIQNTP
complement(2766150..2766557)       PHAGE_Salmon_Fels_2_NC_010463: P2 gpG-like protein; COO54_14030; phage(gi169936028)     8.28e-85            SalmonellaentericasubspentericaMSDYYYSFKEKGFFWQPDTESDNYPDDLIPLTDEHYHELMQGQVDGKYIEHRKVGPVLVEHREYTPEELVAQAEARKAELLAEAESVIAPLARAVKLKIATDEEIKRLEAWELYSVMVNRVDTANPDWPEKPAQI
complement(2766564..2767226)       PHAGE_Salmon_Fels_2_NC_010463: P2 gpH-like protein; COO54_14035; phage(gi169936027)     2.48e-47            SalmonellaentericasubspentericaMSIGNIGTGVFDGSTPCINIGDSDSGFIGSADGVLDIYCNGAKVGYINGNGLHMLTDIHFDNARMTTNGDIFSSVWGDNWLSIWITNQLNTRGTIDWINSELAIRDNNINTRATIDYVNQTFARKNTGSIQDWGWILDDSTGFIMQWGTLGNSNGTYNFPRAFPVGCFAVFVTNTNAQGTQVDNAFGYPVSNSQFFAATKSSGMANLVNNYPVAWFAIGR
2767431..2768003                   PHAGE_Entero_Mu_NC_000929: Gin; COO54_14040; phage(gi9633542)                        1.91e-87            SalmonellaentericasubspentericaMATIGYIRVSTIDQNIDLQRNALTSANCDRIFEDRISGKIANRPGLKRALKYVNKGDTLVVWKLDRLGRSVKNLVALISELHERGAHFHSLTDSIDTSSAMGRFFFHVMSALAEMERELIVERTLAGLAAARAQGRLGGRPRAINRHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPANRIKKRMN
2768367..2769887                   flagellin FliC; COO54_14045                                                          N/A                 SalmonellaentericasubspentericaMAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDSLNVQKAYDVKDTAVTTKAYADNGTTLDASGLDDAAIKAAIGGTTGTAAVTGGTVKFDADNNKYFVTIGGFTGADAAKNGDYEVNVATDGKVTLATGATKTTMPAGAATKTEVQELKDTPAVVSADAKNALIAGGVDTADANGAELVKMSYTDKNGKTIEGGYALKAGDKYYAADYDEATGAIKAKTTSYIAADGTTKTAANQLGGVDGKTEVVTIDGKTYNASKAAGHDFKAQPELAEAAAKTTENPLQKIDAALAQVDALRSDLGAVQNRFNSAITNLGNTVNNLSEARSRIEDSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR
2769955..2770494                   PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; COO54_14050; phage(gi410491531)     7.76e-17            SalmonellaentericasubspentericaMECIAVNDISYGREAEIWPRDYSMLARRVQFLRFNDIPVRLVSNNARIITGYIAKFNPRENLILASDKPKGNKRIEVKLESLAILEELSGNDAFNLSLVPADEFNLQQDTPSRRDYFSICNKCYKQGVGIKIYMKYGQVLTGKTTGVNACQVGVRTSNGNHMQVMFDWVSRITSSDYAE
2770522..2770743                   DNA-binding protein; COO54_14055                                                     N/A                 SalmonellaentericasubspentericaENIDPGGTETIRQRIDSFAAARATTARTLKAADRKELIIKLRKEGLLNLRKSMDTVAQHPGVSRATAYLYARQS
2770856..2771053                   hypothetical protein; COO54_14060                                                    N/A                 SalmonellaentericasubspentericaMSPIASFDVNAREALSNPHQAAIDVKKPAGLVPCGLSVLHRTYPDHHLVELAGVEPASEIPTYHF
complement(2771160..2772185)       PHAGE_Salmon_Fels_2_NC_010463: integrase; COO54_14065; phage(gi169936064)            0.0                 SalmonellaentericasubspentericaMSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELTASDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
complement(2772189..2772821)       PHAGE_Salmon_Fels_2_NC_010463: P2 CI-like protein; COO54_14070; phage(gi169936063)     1.71e-87            SalmonellaentericasubspentericaMIQVKAGENTGGREAIHRLMAAYDFKSRQQLCDHLGASKSTMANRYLRDSFPAEWVIQCALETGVSLLWLTTGQGEPGSNIDHKKDINFVNSAKVKPLSELVSPEIDKATLNGGLLVEAGKAIIDTSLLPSDSGDLLLVNTAGDSYLVDRSQTPPVNGIWLVDIDGIKSIVKLTRLPGNRLVVHQDESSFECSLDDIEVVGRALKIIKSL
2772941..2773182                   PHAGE_Salmon_Fels_2_NC_010463: bacteriophage regulatory protein Ap1; COO54_14075; phage(gi169936062)     5.97e-29            SalmonellaentericasubspentericaMSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGKLAKYMVKKEKIKDVACGTCTKPTRFVSLLVIPTSASLLVSAA
2773215..2773724                   PHAGE_Salmon_Fels_2_NC_010463: bacteriophage regulatory protein CII; COO54_14080; phage(gi169936061)     1.13e-114           SalmonellaentericasubspentericaMFDYKISKHPHFDEACRAFALRHNMTKLAERAEMNVQTLRNKLNPEQPHQLTPPEIWLLTDITEDSTLVDGFLAQIHCLPCVPLNEVAKENLPHYVMSATAEIGRVAAGAVSGDVKTSAGRRDVINSINSVTRLMALTAVSLHARLQANPAMASAVDTVTGLGASFGLI
2773732..2773965                   PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; COO54_14085; phage(gi169936060)     1.73e-51            SalmonellaentericasubspentericaMLTREPSFASLLVKQSPAMHYGHGWIYLPCGKKWHPCIELSPRQQAVRGIGKKRLLQRLSFNVAGILQTRRKAFPGS
complement(2773913..2774371)       hypothetical protein; COO54_14090                                                    N/A                 SalmonellaentericasubspentericaMTKQSSEYFQLHYCYYLELMTATLHGRADKLMTAIQIISGTAVIADTGLEWVFALPVVVIATIQLVWQPAIISERASVQSRQYGELLYAGDELTPELIAQKLKTLHHSDSAPFGSLLNPAYKRAAIACGRSDDTKLSFQEKLFAWFAGCLPR
2774591..2774932                   PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; COO54_14095; phage(gi169936058)     2.50e-78            SalmonellaentericasubspentericaMAIDGPVATVPLSPGKRLDGLNHIAELRAKVFGLNIESELERFIEDMRDQRDVNNKQNERALAAIFYMAKIPAERHSVNISDLTTDEKRELIKAMNHFRAVVSLFPKRLTMPN
2775000..2775233                   PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; COO54_14100; phage(gi169936057)     3.86e-48            SalmonellaentericasubspentericaMRNIETRITKTGPDDAGLNQLLTDARMEERRGRADLMAARLDSLAAHIVSRQLNHTEVAELLRQEAVKIQNEAQEIH
2775233..2775460                   PHAGE_Salmon_Fels_2_NC_010463: DksA-like zinc finger domain containing protein; COO54_14105; phage(gi169936056)     1.01e-49            SalmonellaentericasubspentericaMADSMDLVQQRVEEERQRHIHTARNKTPGVSRVLCIDCDAPIPPARRRAIPGVQCCITCQEIAELKGKHYNGGAV
2775457..2776314                   PHAGE_Salmon_Fels_2_NC_010463: DNA adenine methylase-like protein; COO54_14110; phage(gi169936055)     0.0                 SalmonellaentericasubspentericaMSTILKWAGNKTAIMAELKKHLPAGPRLVEPFAGSCAVMIETDYPHYLVADINPDLINLYQVIKNDVEYFIKEGRYLFEARNDPEAYYKTRQEFNLRHGGAIERALYFLYLNRHGYRGLCRYNLDGYFNVPYGNYKKPYFPENEIRAFAEKAKRATFICASYDETLALLQTGDVVYCDPPYDGTFNGYHTAGFTENDQFHLASILERRSSEGHPVIVSNSDTSLTRSLYRDFTRHRITAKRSMGVAAGDSKTAVEIIATKSACWFGVDLASGPDISVETEVRAWQ
2776305..2778713                   PHAGE_Salmon_Fels_2_NC_010463: P2 gpA-like protein; COO54_14115; phage(gi169936054)     0.0                 SalmonellaentericasubspentericaMAVSKFTLHNAPTTGGSNEAAVVFPWNTPKKAVNPYLDPAEVAPESALSNLIALYAADNEQEQLRRETLSDEVWERYFFNESRDPVQREIEQDRLISHAKTAREQQRFNPDLVIIADVGAQPAHISKPLLERIKYFHSLGRAKAYSRYLRETIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWCRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKTGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRPLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAMKWKKVRKAVDVQEAAADQGACAPWTRGNNCPPVENLNKSGGDLPDIKTMDEKELQEYLHNMGQKEQRELTARLRLVKPKRKTVYKQNISEQRRLQLKAELTSRGFDASNAEVDLLLRGGSIPSGAGLRLFYRDQRLQEDDKWRQWY
complement(2778772..2779919)       PROPHAGE_Escher_CFT073: transposase insF; COO54_14120; phage(gi26250329)             0.0                 SalmonellaentericasubspentericaMSGKRYPEEFKIEAVKQVIDRGHSVSSVATRLDITTHSLYAWIKKYGPESSTHKEQSDAQSEIRRLQKELKRVTDERDIFKKSRGVLRKAVRLRYAFIRDNTCCWPVRLLCRVLDVHPSGFYSWLQQPHSQRHQADLRLAGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPQKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSDQMSPTEYENQYYQRLRSV
2779946..2780539                   PHAGE_Salmon_Fels_2_NC_010463: P2 gpV-like protein; COO54_14125; phage(gi169936034)     1.05e-124           SalmonellaentericasubspentericaMTPRCLLNPWRFIMRLITNLIRTGTVTEVDRENWLCRVKVGELETNWINWLTLRAGGARTWWCPSPDEQVVVLSMGGNLETAFALPAIYSNQFAPPSDSVDGCVTEYPDGGWFEYEPATGRWHVRGIKSMVIEASDSVTYKTGEFVVEADTTRINSEVVINGGVTQGGGAMSSNGIVVDDHEHTGVLKGGDNTGGPV
2780536..2780895                   PHAGE_Salmon_Fels_2_NC_010463: baseplate wedge subunit; COO54_14130; phage(gi169936033)     2.05e-79            SalmonellaentericasubspentericaMTLYIGMSRNDGQAIADTDHLRQSVRDILLTPQGSRLARREYGSLLSALIDQPQNPALRLQIMSAVYVALSRWEPRLTLDSITINGNFDGSMVVELTGHSNNGAPVSLSVSTGADNGSH
2780882..2781790                   PHAGE_Salmon_Fels_2_NC_010463: baseplate assembly protein; COO54_14135; phage(gi169936032)     0.0                 SalmonellaentericasubspentericaMAVIDLSRLPPPQIVDVPDFEALLAERKAAFVALHPVDEQEAVMRTLALESEPVTKLLQENTYREILLRQRINEAAQAVMVAYSMGNDLEQLAGNCNVKRLTVVPADNDAVPPVAAVMESDEALRQRIPAAFEGLSVAGPTGAYEFHARSADGRVADASATSPAPAEVVLTVLSREGDGTAGADLLAVVEQALNSEKVRPVADRLTVRSAEIIPYSVDATIFLYPGPEAEPVMAEAKASLQKYIASQTRLGRDIRRSAIYAALHVEGVQRVELTSPLEDVVLDKTQAASCTEWRVTNGGTDE
2781783..2782388                   PHAGE_Salmon_Fels_2_NC_010463: P2 gpI-like baseplate assembly protein; COO54_14140; phage(gi169936031)     1.43e-138           SalmonellaentericasubspentericaMNSLLPPGSSPLERRLAQTCSGISDLQVSLRDLWNPATCPIRFLPYLAWAFSVDRWDESWTESVKRRVVQDAFYIHQHKGTTSAVRRVVEPFGFLIRIIEWWQTGETPGTFRLDIGVQEQGITEETYLELERLIGDAKPCSRHLVGMSINLQTGGPYFVGAATYTGEEITIYPYINETIISGGTAYEGGAVHVIDTMRVNL
2782385..2783251                   PHAGE_Salmon_Fels_2_NC_010463: P2 gpH-like protein; COO54_14145; phage(gi169936030)     0.0                 SalmonellaentericasubspentericaMSAKFYTLLTDIGAAKLASATALGIPLKITHMAVGDGGGVLPTPSAQQTALVAERRRAALNMLYIDPQNNSQIIAEQVIPETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELKVYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGNDPNFATTMLNTLGGKQPLDNTLTNLSGKDVAGLLAYFGFQEPINRVADAL
2783541..2783723                   hypothetical protein; COO54_14150                                                    N/A                 SalmonellaentericasubspentericaMSERLFAKLSLIIHGRLVCESSSPILALCLCDHTRINKPETKLHRLTLSSFPIFTQKIIT
2783828..2784943                   glycosyl transferase; COO54_14155                                                    N/A                 SalmonellaentericasubspentericaMRILFVGPPLYGLLYPVLSLAQAFRVNGHEVLIASGGKFAQKAAEAGLVVFDAAPGFDSEAGYRRQEALRKENNIGTKMGNFSFFSEEMTDPLVAFAGQWRPDLIVYPPLGVVGPLIAAKYDIPVVMQTVGFGHTPWHIKGVTKSLSNAYRRHGVSAPPRDLAWIDVTPPSMSILQNDGEPVISMQYVPYNGGAVWEEWWERTPDRKRLLVSLGTVKPMVDGLDLISWVMDSAGEVDAEIILHLPANARSDLRSLPPNVRLVDWLPMGVFLNGADGFIHHGGAGNTLTALHAGIPQIVFGLGADRPVNARAVVERGCGIIPGKSGLTSSMINTFLGNRALREASQEVAAEMAAQPCPTEVAKKLIAMLQHG
2785024..2788680                   PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; COO54_14160; phage(gi9630145)        2.46e-24            SalmonellaentericasubspentericaMPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAALTPLITRQAVNDAIAGDTTHLPLLACGLILIALFDFIGNYVRRGYAGELSLWVQHTLRSRAFDSIQKLDGAGQDALRTGQVISRTNSDLQQVHTLLQMCPVPLAVLTYYVAGIAVMLWMSPSMTLIVICVLAALAITALRARRRVFAQTGLASDRLAHMTEHMREVLEQISVVKSCVAELRETRWLDGQSRQMVRVRIGAAISQAMPGATMLALPVIGQIVLLCYGGWSVMNGRIDLGTFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFALIDTRSRMEDGTESVEGQIIGLDVEKMSFHYDNGNRILNEISFSIHAGETVAVVGASGSGKSTLLMLLARFYDPTSGGVWLNTTAGQQNIRDLKLAALRRRVGVVFEDAFLFAGTVAENIAYGHPQATQDDIRRAADAAGASGFINALPQGFNTRLAERGNNLSGGQRQRIALARALITAPELLILDDTTSAVDAGTEAEINTALGRYADNEHMLLVIARRRSTLQLADRIVVLDKGRVVDIGTQAELDARCPTFRSLMSGEGDFLALAPAEQRALWPTTQAAKSDDAHECQPPAGKGFVDRMTRVPERAVQMALAGHGRQVSSLLTPVAWMFVIAALLIALDSAAGVGVLVLLQRGIDSGVAAGDMSTIGICALLALCLVAIGWCCYALQTIFAARAAESVQHTVRLRSFSHLLRLSLPWHEKHIDSRLTRMTVDVDSLARFLQNGLASAATSIVTMVAIAAAMFWLDPILALTALSAVPVVMLATWIYRRLSSPAYAQARLEIGKVNSTLQEKVSGMRVVQSHGQQKQEAARLRALSDNFRATRVRAQKYLAVYFPFLTFCTEAAYAAVLLIGATRVAEGEMTPGILAAFFLLLGQFYGPVQQLSGIVDSWQQATASGKHINALLATEETENIEPSSITPGTGGALRLEALTFRYPEKTQPVLDKLSLTIPPGTVVAVVGRSGAGKSTLIKLLAGLYSPGSGQIRVGERLIDAASLSDYRRQTGLVTQDVALFSGDIAENIRYSRPDSSDTEVEIAARRAGLFETVQHLPLGFRTPVNNGGTDLSAGQRQLIALARAQLAQAHILLLDEATARIDRSAEERLITSLTGVTHTEKRIALIVAHRLTTARRCDVIVVIDKGCIAEYGSHEQLIAAHSLYARLWRDSVGQTRDTQGEVTG
2788448..2788459                   attR                                                                                 N/A                 GCTTAATAACCT
