gi|00000000|ref|CP023714.1|  Rhodococcus ruber strain YC-YT1 chromosome, complete genome. 5669852, gc%: 70.41%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2221482..2222654                   PHAGE_Phage_Gifsy_1_NC_010392: transposase; YT1_2210; phage(gi169257226)             2.14e-31            RhodococcusruberMPGMGVEVVRYNYRLRPGTIAEHALMQEWHRCRFLWNEAVHQFATGRPPSFGTLGKQLTEARARSSWLRDGSQVAQQQMLRTYAQALDASFTVEGRGRPRFKARRKTRPSLEYTRRGFRIRDGRLVLPKGVSVPVVWSRALPSEPSSVRITRDCLGHWYASFVVTREVEPIPVADPGSAVGIDWGVARTATATEERFDLPQHGHRRRCAAQVARAQRTMARRRRGTGHPPSRGYRRARTRAAKVQKKAARRSRHDGRIWARAVVEAHHLVAVEDFRPRFLSRSTMARTAADAAVATVKRELIERGRRAGRKVVLVRPAYTTMTCSRCFARAKQRLGLEERIFRCRACGHTACRDRNAARVILAVAERGHTGVDDVSQADHLPPGGGAVAV
complement(2222685..2223500)       PHAGE_Mycoba_ZoeJ_NC_024147: hydrolase; YT1_2211; phage(gi640885220)                 2.52e-08            RhodococcusruberMHVLEKGAGPPMILLHGTGVAAGFFLPLLAELDGVRAIAPDLPGRGLSDPIDHPRRHFRTAAVGWLDRLLDVLGLEETVLLGHSAGGVWATWYALAHPERVGRLVLVGPPAFPGTRCPLPHRVLATPGLGRLAAGLVPPGRESVLRFAAVMGERATLVRHPDLIDLLVAMRRDPVAESAARDEIHALVSPLALLTPSGFRRRTRVRPDELGRLTMPTLLVWGRDEPLGGVAVARGVTDLIPSAKLAVLPGGHAPWLGQPAQTAVVILDFLR
2223717..2223908                   hypothetical protein; YT1_2212                                                       N/A                 RhodococcusruberMYDTAGEVPDRRDLLRGMHEFVSGWTGMTADTTERRRKAGDLADRRPSFVLCAIRDSNPEPAG
2223867..2223903                   attL                                                                                 N/A                 CTGTGCGCCATCAGGGACTCGAACCCCGAACCCGCTG
2223984..2224799                   PHAGE_Gordon_GRU3_NC_030935: hypothetical protein; YT1_2213; phage(gi100017)         1.45e-79            RhodococcusruberMTTEPDNWTGPITSWLTWLAAGGRPKTTLTLRGYHLRRAARDLGGDPWTLTTDDLARFIGRPGWSPEYRRSIRSSLVSFYTWAHASGRTSANPAALLPTVPVPAGVPRPAPEAALRHALERADERVLLMVSLAAYSGLRRGEIAVVHRRDLVDTIDGWTLLVHGKGGKTRQLPLVPEVARRLRALPEGYAFPGRIDGHLSPAHVGKLISRALPDPWTAHTLRHRFATAAYRADRDLIAVQQLLGHSSVATTQRYTALPDDALRRAVLGAVA
2224837..2225055                   hypothetical protein; YT1_2214                                                       N/A                 RhodococcusruberMVLVVAACGEDTSGPAPADVAELCREIRSELATLPTAVHVDKVAEFLREVEALPGAWPEAEEAAGLALAGRC
complement(2225062..2225550)       PHAGE_Gordon_Cozz_NC_030941: hypothetical protein; YT1_2215; phage(gi100028)         3.63e-08            RhodococcusruberMAGLALAAAAVAKVALGSTAVQAISLGAAIIWHGFSPSGMTKSGTQSFTTSWALLAGWLANTGTYPGSTVVSNALQVQGSKPDATIAVSLPYSSTFSNNRRARIKVNGTVVATSAGFTANSGTIEVTATGVAVADGDDITIEVIMETYASGSISAGGTVTVT
complement(2225550..2226482)       PHAGE_Arthro_vB_ArtM_ArV1_NC_026606: putative tail fiber protein; YT1_2216; phage(gi764161624)     3.11e-15            RhodococcusruberMPRIQLRRGTAAQWTAADPVLAPGEVGVETDTGYMKVGNGTDPWTVRPYQQGPTGAPGTDGATAYQLAVANGFVGTEAEWLASLASTEPGPPGPAGQGLHVDGRVATYAALPAAPAVGTALVVDADELLYVYGEGGWPADGDGVALGATAAQLAAKADLVAGKVPQAQIPAVAITEYLGAVASQAAMLALTGQRGDWCTRTDLGTDWQLTADDATQLSSWREHTYPASPVQSVAGRTGAVTLTTGDLGDMTTVGVDLAKAATAAAGRAVLAAVAGADNAGARALTVWVGTEAQYTALGTKDPNTLYFRTA
complement(2226496..2229375)       hypothetical protein; YT1_2217                                                       N/A                 RhodococcusruberMQVETARTDVWIPEGLAVQKLPYTPAGETLAFDGMTGLSLQDTRNTNQYLRFGPFVADDVSGWISVRPATYSGATDAPSQQVGPSLVETTVPIPVRPGMQVAMSGTVKVRTSGKVFKSPDNTSENFNDAVGVQAVLFGLKSTTDAYGATSEVAVSLARVRTQLQAANSTTITEVTFSFGTPGSPAWVDVPAGVDRVMFAVELVDLYYEQDNNPRAIDYKFTGSVDRYVFRSPRTDSTTDHPIRVHLKDPANLYPTYPHPLSATGWAFRDRTRFDNLTPGTELTAMGEPGGPAVTVSVYEWNGARGALLATLEIPAGQKTTATLEHTGAVDLAGSGTFYVESVLPPLLDTDTVEQTRTTRYEYATITDAVSSITTTLREADLCIALVRLVSDTLASMVPAGQRLRIAALTATGREPLFAGTIRTRRLVSAPDRPRQLEIGVHDVWARLSDDYPAMFDQLAEYGPALHALGEPVEIDGVDYTGPRGPLPAWTTYAPSFYADGGTLLAGLLATRNARRAYLFTDRRGRLVLTSTLPDTLALTASDLRDGDVSYSRELEMTTDSGSLVNVVTVEEHLLDRDDYRDRRLGTGVAPQFRDYPAGLTRSISYRRDESVDAYGPAEQRFPVVRGSGALSDVEVGNFGPPLQWWAGDILDQYATERAEHTRFTIPIETAAQIPLVAALQPFSAVAVRRAGTVQVVRPRSVKHTIDPTGWRCELDMSVRRDQVYWLPAPPAVPDLPVDGGTVAGTGIGAIDGGTPAYSGDGVLDGGDLTTPETPTAPEWDLLDDFDRTDETELNTPWVRGAATAGATIGLLSGAAAPAANNSRARYYHDTPLGPFHRVEVTLGNYPAQASSGAGVLVRAATGLDAPGIVAYVSDTNWQVSYFGDGLDATLWASGAHTRATGDVIRVDIVWHHLVVSINDSVVYERFDLGNIPFGEHVGLYARGADTRIDSWRAVALDHP
complement(2229401..2232199)       PHAGE_Mycoba_Nhonho_NC_028815: tapemeasure; YT1_2218; phage(gi971745692)             4.50e-06            RhodococcusruberMARTVDVYFKGHDKGLGLAIKDVKAELAALRDTAINVKVDVDDAKLDKLKADINSLSNKRVRAGVDVDQAGLTTLKANLNTLTNKSVKVRVDTEIGQLTALKAQLASLGDKTVTVRVRRLGDTSLGNGFNDREVRIRGMITNLATLETQLRTLTRDRIVNLRLNYNTSQFAQLAQMLSRLAGAGGSLGGGALSGIGSMLGGIVSAATSAVGALLLVSTAASAAAVAAGAIPIALTGALGAVAGAAGAMGAAVTGGLGAAVAALAVLGNEELKNKATSTFDAIGNSLKNIAQGAAPALERFFDALPAAFERMRPALERITAGVGDLVDHLTGQLPAIADQLGPALEKAFNAGVPHLKNLVNNLPRLTEAFGNFMSKLGDPAVVDAANRFWQKLPGLIEGVGNAIPKVAQGFSDLMGWIDAGNLDPFIQGFKDLWQQLSSADWSGTIDSIADLANTWGEFMSSIDGQTVADSITAIATAFDGVLTAGLAVKDTLGGIWDVISPKNVVGEFREMAHALLGMLRDTFGNLPFIGDDITEAIDAALGKLGPVKFKATPEIDKVGVEKLDATPGPKIKVDVEPQWSGFKAPPELPKVKVDIDTDSHKIPVAVEVQPFKLDIPDKQKVMVEVEAQPFKLDIPDKQKVMVDVDTAGAREKVHNIASGITLEVPVTMKGDGFDKVKQMRMDPVEVPLRYGPLPPMPAVPTPAPVQVPISFGPMPPLPAIPAPPPVVITVDVSAAQAAVAQMGSAGRAAGQAFASGVASAQGAVSGAAAGLGAAAQAGVAGISLFSEGAAAGNSFARGLSSARGAVASAARSLGATAKANKGYYKGLKGIAADRVMLIENGQAMAQGFIRGMEGQRGQLIAASRQLAADVRGAFDSDVTPRIGLAGGYQMQQSVTVHVEAGTAADPVTVGREIRDYLDAYAGAVNRSGAISA
2244356..2244392                   attR                                                                                 N/A                 CTGTGCGCCATCAGGGACTCGAACCCCGAACCCGCTG

#### region 2 ####
complement(2232493..2232789)       PHAGE_Gordon_Emalyn_NC_031234: hypothetical protein; YT1_2220; phage(gi100021)       3.90e-27            RhodococcusruberMMANGQELLADILRAQLEQQPWYRRVANTVTTAVGAIVGALWTIVAAGVELPPEVVVGVLVLVQLATVAGVKLTPNGVTQRQVDSLEEYVGRHREGQG
complement(2232786..2233559)       PHAGE_Mycoba_TM4_NC_003387: hypothetical protein; YT1_2221; phage(gi18496914)        1.35e-79            RhodococcusruberMHRRGQRDSEEAEEMMAGWTGDPVWLADALRAEGVKVVESPGWKDWGNGDFSWIWGVMCHHTGGANSPVNEIKYGTAALKGLLSQIHLAKDGTATLCGVGVAWHAGLGEYPGLPKNNANYHTIGIEAVNTGTEGWSDAQYDAYVRCCAAIVRRLGYGADRVIGHKEWAGRAQGKWDPGGIDMDRFRADVAARLKTPAAQGDQMNEEDRRMLREIWEQLRGPGGRGWPQLGSNSAGQNLTLVDAIAALKSVIFGKAGQ
complement(2233654..2233905)       hypothetical protein; YT1_2222                                                       N/A                 RhodococcusruberMASFSIQDLTGAQYDEVELIVGQSIESDDVPKIKLVRAVGYVRTKEREPGLTHAEYNRRSVAQQIADSGLSDEDDAEGKDATS
complement(2233910..2234302)       hypothetical protein; YT1_2223                                                       N/A                 RhodococcusruberMRIEVEFDGVRDLQARLTVAGKNIRRLPRAFRDIGNRIHKTGYAESPVYGGQTRNSIRPRSSNLNAKVSAGGSATRSHGGGVYVELNHYGKRWRGQRPNKWLYRALFQNADYGQARLEREIDTTFTEAGL
complement(2234302..2234721)       hypothetical protein; YT1_2224                                                       N/A                 RhodococcusruberMAVSNLGFTDGVGLSIKVGATEYNGHIKDARFENEDEDASFKTFASAATGDGRWLFRGTAFQSFKTASFWRYAWDNAGSTATITLAPYGNATPTADEPHFTATATIGRKPNLGGEVDEEFEFEVEWELTDPPVMDDGTP
complement(2234724..2235137)       hypothetical protein; YT1_2225                                                       N/A                 RhodococcusruberMGAVMVNLATVRAEVESALTEAGLSVTHWTADRITAPCVVIGLGDPYLDTDGPVTHAAPWAAHLVLQVFPALRGVSAAVADQLDDMIGQVVLALRTANPAPGDSSPLRIDDVRVAGNDDGIFAGEVSVTIPLNLKAS
complement(2235119..2235454)       hypothetical protein; YT1_2226                                                       N/A                 RhodococcusruberMTAPADPAAITPELLAQFRGLVNAAESTVDDTALQRYLEHAKLLVDRFCAGVEVDATLLFSWYLQVGAELFDRDKGPAATFDRFDNVVQQRSTRHPLQVVLREMRLWVPSW
complement(2235457..2237040)       PHAGE_Mycoba_Dylan_NC_022325: Capsid; YT1_2227; phage(gi543170536)                   3.37e-10            RhodococcusruberMNVEVRSVPIVGTDEDKREIVGIAVPWDEVTTRIGYPEMFQRGSIPDGAEATLHVNHAGTRGELPVGKVTGTDTDRGYRITATVARTPRGDEALQLAREGVLKHFSIGFVPIETEMRGDTVVRIKTDMREVSLVERPAYTGAVIEQVRSAATTPEQETTMPEDDLTQLRAEQDARFTEIERRIGVLGDGLTGRGAPTFKVRTGGEFLKALARGDADAIAEYRGAAEQLETRAYTGPTTTDTVMQPAWIDKMLRLTDERRPMTNLFSREPLPATGNSFEYPVVTTETGTVQQQVNEGDDLAFLEVALGTRSATVRTVGGYTSLTRQLIERSTVAYLDTALRYLGIQYADAFEKYVRDFYTALPVADVDPAKNVNEVDTTTKPSTAAGWIGAIYDAAAEIEDNSKGLLADFVVVSRDIAKEISLLADTAGRPLFALNGDGQNTWGSLAVRAQDIVGSINSLPVVVVPKLAAGSVAVCSKAAITTLESAGAPVRLEDENIINLTKDFSLYGYQAIYSEQPKGITKITWTP
complement(2237037..2237444)       PHAGE_Coryne_BFK20_NC_009799: gp5, head maturation protease; YT1_2228; phage(gi157168378)     1.67e-15            RhodococcusruberMITVVAGPPCAGKTTYVNTHHAPGAVIVDFDALAVALGSETAHDHTPEHVPATRAARAAAIETVLADQPARGAWIVDTAPTRSMLARYRRAGAHLVVVDPGLDECLRRAELDGRPEWTIREIHRWYATHSTGASV
complement(2237441..2238622)       PHAGE_Mycoba_Ariel_NC_028876: portal protein; YT1_2229; phage(gi971751162)           1.85e-20            RhodococcusruberMGAIARFFGLGTEVRTGSVGSAGGDSPLLGVVPPTRAVLPAVAARDALRVSVVSRAVDEINTMIAGLDLYAYDRHGKRLAQAPDILRTPCLEMDREELIQQSVNDFLLFGEFFWLLNRLPTGQVINVRPLPPDSVTVVMDPMTGRRDYAWQGQLPKSRIVHKRHTTLSHEARGRGPVQAAQQELRLALALMSYQEQWFDGRPPEMILTTDQPLSGPMREQIAADWKAFLADPTNRTAILSAGVSLDSMLLKPVEAQMIEVMDALDRKLARIFGVGAQDMLVPLRGESRTYVNLETTNLDFLTRTLQKPLNALERAFTEVLPGRLDTARFDERGLLRLDSKTQAEIDQLHVTTGLRSEDEIRARDGLAPLPAPKLPTTTVRPPAKPAPAEQAAQ
complement(2238671..2240155)       PHAGE_Strept_phiBT1_NC_004664: gp33; YT1_2230; phage(gi29366753)                     4.40e-21            RhodococcusruberMMTTAVEAPPWLPSLYTRPVEHPDYSEGEMLIRLAEKVFIFEQSDEFRLDEWQQWLIREVLQKYPDGHERAGQLVYQQVVVSMGRQNGKTVLGAVFALYGLILMVDRAPDVISLASTVEQAKNLYRKTRYCVDNSPLLGSRFKTTDRSGITSKNPRYPANYVVKAAGDGKGLQGFSGNLMILDELHILKPETWFALTLGASAQPKAMVLGLTTAGDDNSALLKQLYDTGRAAAEQRDGHDDRFGFFLWEADPALELYDPAALRQANPAIASGRLDIERELRQGRNMQESEYRRYRRNEFVSVENTWMSLPTWLACAGGGIPAHARGRPLIVSFARTRGSWDRVAVAASVKIDDVVHTELIAVLNHADTDWLERVCVDLAGRFNVEKFVSDSETMRHTILALGQQHHLPAEWLTRSNLANGTVAVHSMAKTGRLVHAGDKALTQQIPKAVTVNSGQGVVLDLNKSHGDIEAVYAMVMGVFIAEQQHEQAVPIAFF
complement(2240152..2240484)       hypothetical protein; YT1_2232                                                       N/A                 RhodococcusruberMAMLERDLAALHADPPSLPAGPVADVPRNATFEQSVDLFLDANPWVGDEHVLYVTALFKLARLLDGQTKPSAAAVMEFRQNATALRQCRPEDAGDEDSFEKALADLRKGM
2240477..2240602                   hypothetical protein; YT1_2231                                                       N/A                 RhodococcusruberMATRRARSLVVSSITHPSRMIVQTYMHDHARATERAHATHA
complement(2240831..2241103)       PHAGE_Mycoba_Tweety_NC_009820: gp75; YT1_2233; phage(gi157311264)                    2.93e-10            RhodococcusruberMTTPPKRKDLPRPVKARVLARYNGCCAQCGSDDRPEVDHIVPWTISHDDSEDNLQVLCFTCNRRKGKRMESEARTWFAPAWFPAPIHARA
complement(2241100..2241582)       PHAGE_Rhodoc_REQ1_NC_016655: hypothetical protein; YT1_2234; phage(gi372450061)      5.94e-07            RhodococcusruberMGPMTATLPDSVAELVPLCAGRGAEYDTDNLPVMGRLQAAAQLCRGCPVTARACARAALDGPAPEGMVWAGVPVPYKSQRTAWADAITHLQIAAGYATGEVITRRGTYTASPIRPCPVCGRLTRPGGRRLEEFPGTVARCGKGRCYPCYKGTRKHRKDQT
complement(2241570..2241944)       hypothetical protein; YT1_2235                                                       N/A                 RhodococcusruberMTEYTEWHKDLGAIAFDVSDLVQRVRSLTRAARHLSDDAPSGLEQIVSHAAFNLGASIVLIESAADAMLAAEDVNAIPDDPEPEPMDRPTLVDLGAVVEAGPRFSRPGLVSLRPGEDPADRWDR
complement(2241948..2242232)       PHAGE_Mycoba_Contagion_NC_022065: hypothetical protein; YT1_2236; phage(gi530546542)     9.87e-05            RhodococcusruberMPRQQITVYSSNEKILRAIRNHWADTSFDVITREGRPPTADFVVTLGSIQRPIGVMALALGATPACLPEALYYLAGQAHIRGGLVLVGSDRKDA
complement(2242794..2242955)       hypothetical protein; YT1_2237                                                       N/A                 RhodococcusruberMIDRSDKYKRQVCDICERPFDPKRVIPAPPVCRDCRAEMAAADSPLLLDGPDA
complement(2242952..2243134)       hypothetical protein; YT1_2238                                                       N/A                 RhodococcusruberMNGPGPGKFVSASGKVRMTIDSFHDDQARAVMRELIELADAIRPVAEQCLAEWDAEDQGR
complement(2243220..2243477)       hypothetical protein; YT1_2240                                                       N/A                 RhodococcusruberMTESEYTVAESTILELLADARIGVDALYQRLGNGEHVDEREWENAYRRAYHQLEDSLRAAIIDSIKAETAAEQLRAARIRREFPL
2243458..2243703                   hypothetical protein; YT1_2239                                                       N/A                 RhodococcusruberMYSDSVIVAAERGPELVLKLQREDSLAGSFLERSASERVESLLVLKSSDRLNPPDPYGGARLSCVRVNRDFRAVEHNHGNV
complement(2243796..2243975)       PHAGE_Mycoba_Shipwreck_NC_031261: hypothetical protein; YT1_2241; phage(gi100034)     1.85e-14            RhodococcusruberMIGSREACKILAVDKSTLSRWVAAGRVRLAQKLPGRNGALLFHASDIDALAAARKKASE
