gi|00000000|ref|CP024171.1|  Bordetella bronchiseptica strain D448 chromosome, complete genome. 5206932, gc%: 68.14%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(3590329..3590883)       PHAGE_Escher_Rtp_NC_007603: putative endolysin; CS344_16830; phage(gi81343992)       2.93e-15            BordetellabronchisepticaMRPGRRVKGGVAALVASGVLVLASAGLMDFLGRWEGQGQQVVYADRLARGLPTVCKGVTKHTSPYPVVVGDYWSPERCEQVERLVVSKGQLQLADCIQVAITQPIFDALSSHAHNFGVPSTCASRAVGLMNAGRLAEGCNALAYGPDGAPVWSYVTDKSGRKVFVQGLRNRRLDERQLCLSGLQ
complement(3590862..3591104)       hypothetical protein; CS344_16835                                                    N/A                 BordetellabronchisepticaMEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEGEELCDLEEE
complement(3591109..3591921)       hypothetical protein; CS344_16840                                                    N/A                 BordetellabronchisepticaMIGVGVCLWSDSTLQSGGHGSRLLLDGKPFDTRAPLSLGSKARISGGRGGDSLSGRLTGGPSRRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGGARRAQVFHFRQIDDQKEVQLQIVAGQWTKVVKVRFYDDRDGIKAGVMYARYVEGSQLGLDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALEPEVILTVSGANTYIGTTTVESGMVRIGHPLAFGRNGLIKVRAGATLDKHGYALPHRMIVNDGATVLE
complement(3591921..3592184)       PHAGE_Rhodob_RcapNL_NC_020489: tail fiber protein; CS344_16845; phage(gi461474986)     1.97e-13            BordetellabronchisepticaMMKDRFIQYQPSLGGPVSSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV
complement(3592403..3592819)       hypothetical protein; CS344_16850                                                    N/A                 BordetellabronchisepticaMSGFFKPRMGHFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGVVLSGVPATPEAPADLMIGQDGYYEVTDSRVELEFGEEGSHQITVKRWPYKDWVGTIEHAEDQL
complement(3592824..3596780)       PHAGE_Pseudo_PS_1_NC_029066: tail protein; CS344_16855; phage(gi985757719)           6.29e-52            BordetellabronchisepticaMPDITIQRDPFRPHLRQETIVAPQGVRLDTVLRREGFIVGRGKSLVRTRTFVVQLNGSWKVQSAWHVRLRKHDVVAVVVLPAGGGGSNPLQVVAMAALAAATAGVGAWAASAYAGAAGVAATSAAALTVGAGAATAVGLVGGMVVNSLFPPARLPGSLQREKASPTYTLSAQGNMARPMEAIPARYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDILLPKGLFYAAHDGTLESAGTGVNVYARQIDDSGKPIGTTIVLGRENIVAATLTPQYRTFRYKVEPGRWEISVERNSGHLAERATRMIRDVTWLGLRSYLPSQRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSQDLKPTRNPAWAIADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQIARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVTRSFSVDYVFPAHDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRAQAWREGMALLARNRDQRRFASFQTELEGAIPGYADLVEISHDVPKWGLSGIVEDYDPRALLLTTSEPLQWWQGQNHYISLRGRDGGPAGPFRVEPGSHEREMRIADLVDGHGLYISTGETEEPTHYTFGPGERRALLAQVMRAVPSEGGLWTLDLVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDGVTVFSAPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVHLRAGSWQVRVRGVGALSGPWKTWQGNVSASAAPPPRLSALTAVSQVMAIELAWTVPDAPWISSVEIWESSTSNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDEAGQVGPWYPDGQGVPGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMGRNINTVTAKLDQEREERLNQDGALARRVEDAIAANGASATAVKQTSTALSSLDGRLRATWSVQTQVAQDGKVYAAGMALGAYTNERGRVQTSVYFLADRFAFLNLANGKISTPFVVQNGQTFLNKAFIGTAWIKSAQIESLDAGKIVVGVMSADRINAESLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLGRGGSELATVATGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGAAMITWISDALPGGKTISWSIKARHPVDGTYYIGGRVAVLAIQR
complement(3596773..3597162)       PHAGE_Achrom_phiAxp_1_NC_029033: hypothetical protein; CS344_16860; phage(gi971821777)     3.42e-41            BordetellabronchisepticaMTSSDVNRYIGLMWRLGGRGPDAYDCWGLLRECRERYFEGGIPETALGEQARALYAHKMRTGAWKIVTHPQHGDGVMLRAGNDPHVGIYLDLDGGGVLHALEGRGVIFSPMRALFTMGFSQPIFYRIHA
complement(3597159..3597692)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS344_16865; phage(gi985757717)     3.59e-09            BordetellabronchisepticaMSLEQALKEAYASAPQDRVVFDTLELRHPAFVDPHGEPTAVRVVLGYEDIRARLETEAPLDGGQDVMFQAGAFRFRLPGFEEGQVPSLLIAIDGASEQIVDHVEAAVQSRFPIYVTYRPYLSTDLSMPQMNPPITMELNKVTVTGSSVSGTATLSDVHNWAFPHERYVRERFPGLFR
complement(3597759..3598118)       PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; CS344_16870; phage(gi374531665)     1.37e-05            BordetellabronchisepticaMPLPVWPAGLPLVEFSRQPISPFQRTEMDSGRSRHRRHSRVYPIHAPVSFVLDGDQYDAYQRFCSIDLNGYAGWFLMAINGPGGLKLRKVRWLLPVPREERIPGDLWRVSGQLETMSDA
complement(3598128..3600728)       PHAGE_Xantho_OP1_NC_007709: putative tail length tape measure protein; CS344_16875; phage(gi84662610)     7.22e-63            BordetellabronchisepticaMADEVASLVLRVDSTQVKGASTDLDKLAAAGAKAEQATVKVGTAGKAAATGLGAMGKAAKAAQAQTAAATLSVGEMRTAMRSLPMQMTDIAVGLSTGQSPFYVLLQQGGQLKDLFGGIGPAIKAVGGYVASLITPFTAAAAGAVALAVAYQQGAEEGRRFTAAITLTGNAAGVTESQLAAMANRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLAEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYDQVKALEAEGRTQDAARLALNTYAQAMEERYPQVVENIGDLERAWKAVTDVAKGAWDAMLAVGREEALEQKLAQARKNLQSLETSRFRTFLDDDRIKQLRGEIAGLEELDKWQKAAAKSRADQAGAVARGIQARKDLDSYLESHKGASLAASMEAENAAFKKATAEFKQNSDEYKKALKLHVARVAQIQRQFAGSKGAVASGVRELERAREQEAALRAQLESAVKITSARQELVKFEQRIADLKARDQLSADEKSVLANEQALRQQLELNAGLADQITLKKEAVQLKVLERSAQETLIADQQRYNDLLAGLTASPRLREQLHAQQQIYRDFQRQVQRAAEQNEAKEITPQAYADRVRVLKQSLERRLELLADHYNKARLLEKDWKEGARQAFNDYAELVSDVAKLTRSAFANAFSGAENALVKLVVTGKARFADFADSIIADLTRISVRQSITGPLASALGSVFRNAFGSALPATASWAMPELAGRRAMGGPTLPRRLYEVAENGPELYDEGGRTYLLAGGDGGHVTPLTHSSYRPSTPVTVNLHGVESQPQVRARPDARGGLTLDLIFRQVKDQLAHDIDSGMGSLPRALERRYGLSRQLA
complement(3600756..3601046)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS344_16880; phage(gi985757709)     4.29e-18            BordetellabronchisepticaMYRPMPDKAQLAEFGLRPDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALAGVMRMLGVPPEQEIDVFDGVRVMESAALRMMNKK
complement(3601064..3601393)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS344_16885; phage(gi985757708)     4.28e-15            BordetellabronchisepticaMSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSEASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQARRKN
complement(3601406..3601921)       PHAGE_Pseudo_PS_1_NC_029066: tail protein; CS344_16890; phage(gi985757707)           3.76e-29            BordetellabronchisepticaMKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNSRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNHDELYYLVYPSFDSDPSMELDVNMQNTATFSMMSDFTRYAPLA
complement(3602176..3602676)       PHAGE_Xantho_phiL7_NC_012742: P07; CS344_16895; phage(gi238695594)                   2.29e-35            BordetellabronchisepticaMNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYMHGAWPTQHIDHMNGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEGCSI
complement(3602684..3603106)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS344_16900; phage(gi985757706)     2.66e-34            BordetellabronchisepticaMSQDLIRAAFEKRLSDWAKARTPALPVAWQNTKFTPPAAGVYLRAYVMPAATISRDAAGDHRQYRGVFQVNVVMPIGDGSRSAEQVAAELDALFPVNLVMQSGGLAVRVRTPISNGQPTTGDADHTVPISLGYDVQFYPE
complement(3603103..3603501)       PHAGE_Salmon_SETP13_NC_022752: putative tail protein; CS344_16905; phage(gi557307690)     6.19e-31            BordetellabronchisepticaMSFTADLGKFVARAKGNVDTATRQATVLLAQGVILKSPVDTGRFRANWQFSAAGVQRGTTMAIDPGGQVTLHRLVAEIRQTAAGGVTYLSNSLPYAVRLENGWSKQAPQGMVKLTVQEFQQYVSQAAKDANK
complement(3603498..3603893)       PHAGE_Pseudo_PaMx74_NC_028809: putative virion structural protein; CS344_16910; phage(gi971745311)     4.87e-08            BordetellabronchisepticaMATFDYADMAATAQELLDEFGGPVTVRQIVTGEYDPDLGQASTTTVDNDGIGALFDYTAQAAGLANMAGSVIETGDKQMYLAPELAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLFELQLRQA
complement(3603893..3604093)       hypothetical protein; CS344_16915                                                    N/A                 BordetellabronchisepticaMGNFLRLVLPTPTDAPGLQDCRGIRLYTADGAPIPGLVAVKLEAGTDEPIWRATLIMDVNVSGKPD
complement(3604095..3604577)       PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; CS344_16920; phage(gi100013)       4.72e-20            BordetellabronchisepticaMPLIVEDGSGLANADSYVSVADCQAYAADHGLAFAGEAAALEAALRNATLYLDGEYTYRGERATDIQALEWPRTVATGVPREVVNACCELAARALKSPLWQDVSGTTVGAAIEKTVGPITTKYANAAGARNDGQTRYAGVTAMLRRWLSSYGSSVKLVRC
complement(3604640..3604897)       hypothetical protein; CS344_16925                                                    N/A                 BordetellabronchisepticaMKAKLPIWYLPGPFYRYEQDVKAEAAKAGVRIVDANATEDRKGAAKDVPKVTLKPEYRPKGKAEAAKEKELEPTPKDPVKDPAKA
complement(3604907..3605875)       PHAGE_Pseudo_PS_1_NC_029066: major capsid; CS344_16930; phage(gi985757701)           7.87e-151           BordetellabronchisepticaMSISQMQVFNKYFMPAIIETLGQQIQKFNAASRGAIMLTTAGFEGDFLQESFYQAIHGARRRVDRYAANGSASPTDLTQLKHSSVKVAGGFGPIRYEPSQMTWLEKPTAEGIEVASRHFAEALLQDQLNTAIAALVAAISNQALATVNVSAKTGLNYSVLNDAHAKFGDSSGLIVANVMSGQVYHKLIGQNLVNAQQLFEYGAVTVVDILGKTVVVTDAPALYATGTPNLQKVLGLVAGAATVSDGGDLITNIETSNGKERIETTFQADYTFGLGLKGYTWDEATGGKSPTDAELATGTNWDKVATDIKHTAGVIAIGDASK
complement(3605902..3606504)       PHAGE_Cyanop_KBS_S_2A_NC_020854: hypothetical protein; CS344_16935; phage(gi472341499)     3.61e-05            BordetellabronchisepticaMPLDRNDPEVKALIEEVTAEATEALSAKNKELIAELRTAKAKAKGSEIDPEEHARLQTQVEELTGKLEKATKDSARQIEKLTKDLTEKEGALTQHLIDGGLSTALAKAGVAPHFMDAVKAMLRSQTSIKDGAAVIGDKLLDDHVMEWASTDQGKHFITAPANTGGGGQGGNGGGKCTGNMGGSREDRVAALKAKFPELSG
complement(3606628..3606870)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS344_16940; phage(gi985757698)     7.87e-23            BordetellabronchisepticaMPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCHRCGAREVIETRIGVFESGRSWSGGTKVLLCALCFVRGERVVLK
complement(3606876..3607928)       PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; CS344_16945; phage(gi985757697)     1.99e-119           BordetellabronchisepticaMRYSNGVVRRIIALLNRVDIDLAEQVARAMERLPASAFTVARLDAVLKDVRNLNAEAYRQVRGELEKDLRDLAGYEVGYQSQLFESLGIEFTTRGVTAGQVYVGAMAQPFQGRLLREWMAGLESGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKGYADGLLEIDRRNAEAVVRTAISHTAGLARDRWYEANDDIIGALVWVSTLDSRTSQMCRLRDGLQYTTDHKPIGHRVPWGAGPGKLHWCCRSGSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYAEWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFARAGVK
complement(3607957..3609375)       PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713: portal protein; CS344_16950; phage(gi428782116)     4.09e-68            BordetellabronchisepticaMPVDSKHPLWTASQPRWERCRTALQGQDAVHAAGTKYLPKLAGQEQEEYDAYKGRALFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVVKEVIDVTRVGVLVDYPVASGEFMTVGQAQAVGLRPYLATYKAEAIINWRTARVSGVNQLVLVVLAETYTEQKDEFTAEEKTQYRVLDLADGAYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVTGHELQAGQSLKIGSSEAWVFSEAEARAQYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPVGLTAQDLTALVGALQAAAISPETFYDNMRRGGIIDDGVTFEEEQARIEAAGPALGTLGGQDGQPANRAV
complement(3609378..3610655)       PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; CS344_16955; phage(gi100002)     0.0                 BordetellabronchisepticaMPSLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKTDKAALAWRKIIARLRHTAPGLINGVDVTTTPEGFKFVYQQFVKQVRERPDLVALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYPNFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPAVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQAYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
complement(3610642..3611013)       PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; CS344_16960; phage(gi100024)     3.75e-13            BordetellabronchisepticaMARPKKELPDLGQIEALASKGLNEEQIASALGISYSTLRRHKASNEQLQAALKKGKALGIADVSSALYDAAVGGNVTAMIFYLKNRSPDSWRDKPDSTNDDNAPPPVKVVIEVKDASVPDAEP
complement(3611092..3611319)       hypothetical protein; CS344_16965                                                    N/A                 BordetellabronchisepticaMPMAGAVRPSETKPRADGRGFCFAGSGLSRITAPGHRLARRAPARDIKARGAFSPASSLDLVDENRTRPARSVGG
complement(3611332..3611772)       hypothetical protein; CS344_16970                                                    N/A                 BordetellabronchisepticaMKTPKLLLDRLPSDFHARLENWGEVMRSRPHYAVSPTYEVCRRLAKRAGQGAWGGEEDMRELDESDAGLIEAAWRNSVYRMLHQHRDILRAHYVTRSYWRATCRALDLRSREYDDVLVRAVSNFEDFVARYAVVMHNPAQDRPTTV
complement(3611769..3611972)       hypothetical protein; CS344_16975                                                    N/A                 BordetellabronchisepticaMTWARRSERGDPLKVLERRQEPPPLRSCAGCAHIRLVKSEFDGRRILACGHGMQVGQRCRLFEERGR
complement(3611969..3612652)       hypothetical protein; CS344_16980                                                    N/A                 BordetellabronchisepticaMTHVDLIAGQPAGVPLDPLAGTLAGSHARVPTFDLEKINTDVADPWARGGAETAPDAAPRRANAGSTVVPELGPNVTILALDLGTKLGWAVRGRDGRTSHGTEVFTPRASWSPGQRWLRARSFLVEVITQRQVHAIAYEDVKRHTGTDAAHAYGAFLCIVEMLADSHRLRLLPVGVGTIKKHWTGKGNADKADMIAEAKARGFRPETDNDADALAILSWAVAQERAA
complement(3612649..3613590)       PHAGE_Entero_ES18_NC_006949: gp61; CS344_16985; phage(gi62362274)                    7.60e-56            BordetellabronchisepticaMSQIISSNDVDFQAYMAEAEPQAKVLAAEAWRDDLVRTVEHGDQITGAKLPWSKTHDLLRFRPGEVTLWQGINGHGKSELLGQACIGFATQGERVCIASFEMKPQATLKRMLRQTAMNARPGVQAVDRLIDWSRDRLWLYDQQGTVTPAMLYAVIRYCADRLKVRHMVIDSLMKCVRGEDDYNGQKDFVDMLCTLARDLRMHIHLVHHAKKGENEDQVPGKFSAKGSGAIVDQVDQMLTVWRNKKKERIAEAELRKDGEVSADTHDSPDTLLICDKNRHGEWEGRIQLWRHADSLQFTGDKRRQPLDMIGALA
complement(3613587..3613958)       hypothetical protein; CS344_16990                                                    N/A                 BordetellabronchisepticaMIGHQSLIAARMGGYRPTDVWLTCLTAEQPCGRFTHPEAQLGQMTNGRWVGFPDIHIHDDENAAALDLRVVVGLVVHIVAPSRSRAMQLLRRVRDFSPAKAIASGEWGILLWDPAADLQELRV
complement(3613955..3614779)       PHAGE_Salmon_epsilon15_NC_004775: putative DNA replication protein; CS344_16995; phage(gi30387421)     7.82e-13            BordetellabronchisepticaMANDWIKMRTDLYRDPRICVMADILMNEDGELARYVNQHCQRHMSVTRNVMRNVTVGALVSVWGVMRLRGKAEGTDLVCRAVTTSVLDDIADLPGMGAAMEAVGWVVSTAEGLVFPRFFEDHNVDPDASPKSKSAARQQRYRERQKLESDVTRNVTRNVTRDAKVTPREEKSREEKDNPQSPLPGAEGWRLPDWIPADPWRQFEEMRRKKKKPMTDAARKLAVTKLDALRAAGHDVATMMDQSILHAWDTFYPPKADAALQGALGSDQPWTGAV
complement(3614779..3615192)       PHAGE_Burkho_phi1026b_NC_005284: gp74; CS344_17000; phage(gi38707964)                1.01e-19            BordetellabronchisepticaMLRRTPLQRKTPMSRLSTPMSRSVIKRRAPKKRPGYHDPKYLAACRGERCYQQFAGCCSYKGDPTVVPAHQNQGKGTGLKVPDRFTVPACYHCHTLYDQSGLDREHKRATWDWGYTRWEPVCAAKLTANDDKMKEAA
complement(3615192..3615647)       PHAGE_Pseudo_PAJU2_NC_011373: putative NinB; CS344_17005; phage(gi209552487)         2.65e-08            BordetellabronchisepticaMRQRMLNPKSFLLIGASQQAAAQAFLANLPLDADEPLEVVVRERQKPRRMSQNALMWAGPLRDISEQAWVQGQRFAAEVWHEQFKRDYLPEEFDPELCLEGYRKWDFTPRGDRVLVGSTTMLTRRGMTQYLQMVEAAGAALGVQFGAREGQ
complement(3615647..3615958)       PHAGE_Salmon_SPN3UB_NC_019545: putative CII; CS344_17010; phage(gi423262426)         1.40e-10            BordetellabronchisepticaMSTQPVSADKLESTRKNGARIQAEVLRRLADVTQERAADCMGLDASTLSRFKDSLDRFCQLLAALDMQIAPTDSVVVSRDDLQALKRMAFKYLQAEIESEERG
3615993..3616157                   hypothetical protein; CS344_17015                                                    N/A                 BordetellabronchisepticaMTDTEKLLAAAQEIARRAFDDPSEKTVMDLFDELRAERDRRTWQGSDAAGATVH
complement(3616403..3616627)       hypothetical protein; CS344_17020                                                    N/A                 BordetellabronchisepticaMVNPIEPGDIPHEIQRDVVAAAIEAAAFALRQGFEDDPAKAARLVAEAAVVAWEVVNGVSSPAPSPGAADGTRR
complement(3616865..3617068)       hypothetical protein; CS344_17025                                                    N/A                 BordetellabronchisepticaMDGEAATRFWKSNRSAWRARCAARSAMNPNTDRRRRASLPRVARTLLLLGPLGVAVVLLAVAGRGRR
3617067..3617765                   hypothetical protein; CS344_17030                                                    N/A                 BordetellabronchisepticaMSSHLLLGRHGVGRAWMVSPIKVGIGSLAELLCQATNALLVSIRSQQIGPLQRKPLPSCEVENVAVVGRPQGVPAERRIGGSYTFLIYAGETRLKLFHRIALYLWRDRYDYDPTRGCPGEQNNISLWTRLRPARNRLIAVLLNGQLWLAFLGGGFAIGAALLPGYLDRVKTGQQVNTNAGELLLRCVQEANHVLRCRPVSDGQDEIVSDVDGPSLDSNRPGRESPAQNVKHE
complement(3617929..3618126)       hypothetical protein; CS344_17035                                                    N/A                 BordetellabronchisepticaMVELGYDVKSDAQIRQWRIRHNRRVPSPENCVGLELATAKQIRRQDLREDWPRVWPELAEPQEGA
3618720..3619349                   PHAGE_Pseudo_F10_NC_007805: Repressor protein; CS344_17040; phage(gi148912804)       1.04e-09            BordetellabronchisepticaMRIGGTPAPWEPGGTTTRQMERHSQGLRINQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPEHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGWHQASGW

#### region 2 ####
complement(4270371..4271045)       PHAGE_Brucel_Pr_NC_019447: structural protein; CS344_20070; phage(gi418487858)       2.68e-10            BordetellabronchisepticaMQFSPEIQKLYANVLQQMGTPFDLSSLPQAGSAYDPNLATNNATELLMERINPELDRQYESLRAQMANQGIAQGSNAYSRELSRFGEQRNDAANQAALAGIGLGMQQQGLTFNQMNQLRNQAMQEQSYARGLPLSEFNALLGGSSAMQFPGYAQQATTGAPDLVGAAGNTYKGDLGAYNAGQMQRQGMMGGLSQIGGAAGSYFGGPLGGLLGRVGGGLLGGLFG
complement(4271931..4273139)       PHAGE_Brucel_Pr_NC_019447: structural protein; CS344_20075; phage(gi418487856)       3.39e-28            BordetellabronchisepticaMMTTAGGSFLYLFNGIDKPLMYDGTEWKSIDAGSTPAITGVDTTRLIDGCVFKGRMYLVERNSMNLWYLPVASIGGAAVDIPMGQIFQRGGHIVTAKTWTIDAGNGSDDHLVILTSNGEVAVFSGYDPGDASAWALIGVFYLGRPIGQRPAIKFGGDLVILCEDGIFPLGKGLLSSEVDRRVALTDKIQNSINQAVTSYRPNFGWELCLSPDNTALMLNIPADGQTGSANCQYAMNTLTGAWTKFSGWPALTWIDTEAGVFFGTNGAVRRAWAGRTDAEANIEADVLSAFNYFKAPAETKYFTLIRPHLRTTGRPGILVGLNGDYVPRDPEGTLPFFPAEEMIWGQMYWGDMYWGGSFRSATEWSTVGGMYKAAAVRMKVQNNGAQVEWAATDFVFSRGGLL
complement(4273496..4274392)       PHAGE_Brucel_Pr_NC_019447: structural protein; CS344_20080; phage(gi418487855)       4.60e-05            BordetellabronchisepticaMTLVELVDQILAELGFPKSSGVMASQERTVQQISALANRLGRDLTRDYDWRMLMREHILVTEARAMSASVTEGNYVVTVADTSGLSAAWGMTGEGVRPFSQIISVDSPTQVTLNMPADKSGTFDMTFSRVEYPLPADWKKQLPQTEWDRTNRWPLIGPQTPQMWQSLKSGIVYAGIGEHFRISGNSITLTPPPSDGLLIGFEYLSKNWVVGSDGVAKSSFTADDDTFIYDSSILVLGVKSLFFQAKGFDSSLETSQYAALVSRAQAQDHSAPLLSLTGRWGRRRFIDNCNVPEGNWGH
complement(4274389..4274955)       PHAGE_Myxoco_Mx8_NC_003085: hypothetical protein; CS344_20085; phage(gi15320620)     6.63e-23            BordetellabronchisepticaMIQENGALVEFYREAVQNNFKSAQEGRPIFDEKDFVRIQTPGDTRTVIERIASDQDKGRFPRAWDMFSRGLEQAQEGTPLEQWNMVTRSQVKELKHVGITTVEALASVSDANIQRLGPGYAQLRRNAQAYIDSSASDAKATAWAREKEAMEERMEQLQEQVKALLAAQEKPSDDAAKRGPGRPRKEQE
complement(4275028..4275213)       hypothetical protein; CS344_20090                                                    N/A                 BordetellabronchisepticaMATDANRFIALGMPPILAQEVAKAIDAAAGAQPTITVTLTGGVTGTGSGTTDISIETTVTP
complement(4275223..4275513)       hypothetical protein; CS344_20095                                                    N/A                 BordetellabronchisepticaMATVFTDTPKIGVALLQKIDSADTKRRSGHRLGSQVWGSDGKRYVYAQAGGAIAASTAAATVNPTTFIATGSGGSYTSPPVAMATGDQGWFAATSV
complement(4275523..4276524)       PHAGE_Brucel_Pr_NC_019447: major head protein; CS344_20100; phage(gi418487852)       1.91e-46            BordetellabronchisepticaMGFANAQVSDLLATTIAARSRKLADNLEHNNALLAKLRQRGNVRTFSGGTHIMEEIMYDDGDTSSGSYSGYDVIDITPDSPISAAEYDIKQYARAVTISGLELIQNAGREQMIDLLAGRVQVAEARLRNAISAGLYGDGTGNGGKDITGLQAAISSTPNTGTYGGIDRGTWAFWRNQVISCTSDVGAAMSPATIQSAMNKLALACARGTDRVDLIVADNEAFEAYQSSLQAIQRVTNDSGQGTAGAGFTSLKYHGAGANADVIFDGGIGGNMPAKTMYFLNTSFIFFRPHRQRNFVPLGNDRQSVNQDAVTRLIGWAGNLTTSGAQFQGILVD
complement(4276537..4277025)       PHAGE_Myxoco_Mx8_NC_003085: hypothetical protein; CS344_20105; phage(gi15320617)     4.35e-08            BordetellabronchisepticaMKIASDYGIDLQKAVQTSPDPRMWQLERQLHEERMAREEFQRSIQDRDTTAATSEIEAFAAEPQNEHFAVVRGDMAQLLQSGIATSLQDAYDKAVWARPDLRKSLVDKERIEAEKRAIEQARKAKAKSAASSVKGSPPSSSGALKPDASVQDTVRAAIDGLI
4277032..4277583                   hypothetical protein; CS344_20110                                                    N/A                 BordetellabronchisepticaMILGLLIAVTQAIFNQQEVIYRLGYWYARILNVRFERSDGAPDFLRKLHSRLVAFDALVIVVLPSLDLSANLRRELLVLVCDILSPGLRSILDLGIGRFRVLRTTSCLRLSSDSLLRSWFVVRRLCVSWLSIQPVAGLHNSFLVLYWIQLHNFQLALFHFVDGRAHRVLDRLLLLLHRDFLCH
complement(4277580..4277777)       hypothetical protein; CS344_20115                                                    N/A                 BordetellabronchisepticaMGDISPYQSMITGEMIQGRRQHREHLQQHGCIEVGNEKIKPRKVVEPSREDYRRSVAEIMNGKGY
complement(4277870..4279684)       PHAGE_Brucel_Pr_NC_019447: putative portal protein; CS344_20120; phage(gi418487847)     4.06e-47            BordetellabronchisepticaMQFEIDQYPDFDEAMKSAIKDRLLPGRGVAWIRFEEYSVDRPEQSEAGSQDIEQPAMAAGGEPEILERSCVDYVYWEDIRYSRVRVWSEVTWIARRIYMTDDEGVPRFGEKFKQVPKTQMPTGVDEDVLRSGVMDHAKKAEIWEVWDKTAKKVYWVAKGFAGLLDEKGDLYGLEQFFPLPKPLFATQTSDQLTPVADFHLYADQANELDLLTTRINGLVAALRLVGCYDASQPALARILESSDNALVPVDNWAQLSEKGGVAGAISWVPIKDVAAALQIAYTAREQAKQVIYEITGLSDIIRGATKASETATAQDIKRQFGSLRLQERQRDIAVFATEILRIKAEMAMDLYSAATMKAMSGIMQTQDAQYADAAIMMMKKEPLRDYQIEVAADSLVALDDEQQKQDVVEFLGAAGGFIQQAVQAVQTVPELGPLAMEMLMMGVRNFKAGRTVEAAFEQFQAQMAQRPPADPNAGQNAEIQARQQVEMAKLQQQAQADQMRLQADIEAERVKAQATMQIERERMQMQNQLEQQRAQMQAEVDRRRAEVDAQAKTITEQNRISFERWKAELDASVKIETANIQSKAKVQNAATETATSEIAREVRP
complement(4280166..4281527)       PHAGE_Bdello_phi1422_NC_019525: putative TerL large-subunit terminase; CS344_20125; phage(gi422936857)     1.07e-50            BordetellabronchisepticaMSTLRISVPRKLKPLLGPKRYKGAYGGRGGAKSHFFAEQVVLRCLVRPTRVVCIREVQNSIKDSVRQLLIDKIEKLGVSTAFEVLESEIRGPNGSLIVFKGMQSYNAANIKSLEAYDIAWVEEAQTLSQHSLDLLRPTLRKEGSELWFSWNPRFKTDPVDAFFRKSPPEDAISVLVNWRDNPWFPDVLRREMEHDFAVDEDKADHIWNGAYGSSQGAILAKWVNRAERDGRIHDDIEFDSEGSPIEVSSDLGFRDTASWWYWQRVPGGFNLLKYEGDSGLDADDWIPIIQESVKSLGAKGVGKVWLPHDAKAKTFQSRHTTAEKFLVAFGAGKVSVVPQTKKMDQIGAARVVIQRCAFNKTLCEDGIDGLIAWEFDWNEEANVFSREPLHNWASHPSDAFAYGCQVMQDFKEPPKLESARFPVLHDGKRMRTGVTMDELWRESDRMSKRVSRI
complement(4282451..4282810)       hypothetical protein; CS344_20130                                                    N/A                 BordetellabronchisepticaMRSRYEQSKINGALREVAIDKLSQMGVKVGPASRSDYLARRINDVMSWDLGGDAMAVIRMFVAHKPVDVTPGKYIPTHRRPYRLDATLRYQADRAADSQPPLYALSSNIFEHRDIGTGG
complement(4282812..4283153)       PHAGE_Burkho_Bcep176_NC_007497: gp8; CS344_20135; phage(gi77864633)                  9.28e-49            BordetellabronchisepticaMNRSYGLGRLKSGAMNKTEQAYAAYLAQLQAVGGILWHKFEGVKLRLADNTFFSPDFAVMRPDGQIELHEVKGFWQDDARVKIKVAADMYPFKFLAIKARAKKNGGGWEVEEF
complement(4283150..4283818)       hypothetical protein; CS344_20140                                                    N/A                 BordetellabronchisepticaMQLTESKTSLGALVVSEMRLMYGAKFGQQWQGLTPRELKDSWDQKLTGMTEAEIRAGLVACLSRDWPPTVPEFLRMCRPWMSPEVAYHEAVHGMSCRRRGEMGNWSHPAIYWAAVATGPHDLLNSTYGSIKQRWGKSFSDELSKGNWPDIPPVRSALPAPGQTMATKAEAAAALQRMGAAKALEESGRNPKRWIDKWQQRIKNGERPSPAIAAMLKRAMEEA
complement(4283805..4284590)       PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; CS344_20145; phage(gi100045)     8.41e-36            BordetellabronchisepticaMDWFRMYAEFATDPKVQMMPEAMQRRLVMLLCLQCGNGIETFHETERESSIAFALRISEAELAETKELFMRKEFINSDWTLRNWDKRQYASDSSTARVRRHREKSKKATETDETFQERSSNALEQNRTDTEQIKETPPTPRKRGSGFDASSIELPAWLDLVDWQSWVADRKARKKPITEEGARRQLKQLADYRADGHQPADVIANSIAGGYQGLFPPRGQIRASPPSRAQAMADWNAELGEVLAEGRRPSVIDMGTIDATH
complement(4284590..4284949)       PHAGE_Entero_P1_NC_005856: Ref; CS344_20150; phage(gi46401630)                       1.25e-11            BordetellabronchisepticaMKGRSPTAAQKRFHDLLCQHVGCIACRKEGLFNSWVSVHHVDGRTKPEAHWLVLPLCAGHHQDGTGGQWMIAVHPHKARFEAKYGRQRGLLVECIEWLQSHEFEVPEGALSAAGMLEAA
complement(4284949..4285185)       PHAGE_Erwini_phiEa2809_NC_027340: hypothetical protein; CS344_20155; phage(gi849120260)     1.07e-08            BordetellabronchisepticaMSEFHPVRTKADLDLLDHDEIVQGYREGLAGAAQPGSDKSRSYWHGWRNAQVDRGWAKPDDAQCQLAREYVGRYVGLH
complement(4285182..4285613)       PHAGE_Burkho_BcepMigl_NC_019917: hypothetical protein; CS344_20160; phage(gi431809873)     1.12e-46            BordetellabronchisepticaMTIPVAFQGEVMLAGWSQTHNGGAKVTFWLSDEEDLAAFKVMTVSKGKTAGQRLAIVAVEIGDDEQPKTQPGPPKGGELAKLAGMFCQSVQFWEFCRCDDADEARDWILRVCGIKSRRDLDHNPIAAKLFHERIRKPYMESRK
complement(4285613..4285927)       PHAGE_Salmon_SPN3UB_NC_019545: putative CII; CS344_20165; phage(gi423262426)         6.59e-09            BordetellabronchisepticaMNTQPVSAEQVESTRKNGARIQGEVLRRLAEVTQDRAADFMGTSASTISRAKSDLEQMCQLLAALGFQLSPSNAMVISRQELFAMKAMLAKYLQAEVENQHRSL
4285959..4286120                   hypothetical protein; CS344_20170                                                    N/A                 BordetellabronchisepticaMTETESLLSKAQDIALRAFEQPTESAVMDIFRRLCVEADEARMQQDLAGATVH
4286200..4286496                   hypothetical protein; CS344_20175                                                    N/A                 BordetellabronchisepticaMDMEPQYVIREEFDQLKFFVESMKDNLIGCRARMEALSIIAASSLQFLSDEQRQALASTVRMSTENALALYDDDPHGQSFRANIAANIERWLRQLRDN
complement(4286493..4286693)       hypothetical protein; CS344_20180                                                    N/A                 BordetellabronchisepticaMAIVKLEMAVCDFCGKVAANVAFIVVASRGVEKARSPAICDGCIDLCVELANEHRRKQEGPEHAQG
complement(4286694..4286924)       PHAGE_Salmon_g341c_NC_013059: Cro; CS344_20185; phage(gi255252725)                   2.24e-11            BordetellabronchisepticaMNAIQSIRKRLGVTQAHLAAGIGMTQGNVSNYECGRQSVPPDVAARLIDWAKSLGHEITFDQIYRPELEAGRKEVA
4287009..4287419                   PHAGE_Escher_phi191_NC_028660: helix-turn-helix protein; CS344_20190; phage(gi966198041)     1.12e-09            BordetellabronchisepticaMAKKLEDWQVEDARRLKALFEERAEQSQLAFGATYEIGNQSMVSQYLLGIRPLNIVAATKFAKGLCVTIDDFSPTLADQIRAAWYLTAAGLQHAEGQPQFPGTSEQTHNLSQTLDKELQKLARDERAEGRQRRRPK
4287618..4288082                   hypothetical protein; CS344_20195                                                    N/A                 BordetellabronchisepticaMFIAAAATMFGCGAAKADDKDAQLAQEMMVAFQCGQYATFAGDQERAKILYDHGVETGRRFISTVRKGTITTDAMSKSVPMIVIWRLSEGPSMDFNLGRMFESITSDAADDIIKRDANRLVRPEDKWVFDKNLQRTIAQDRYRTANCWAVGPKE
4289218..4289595                   PHAGE_Burkho_DC1_NC_018452: hypothetical protein; CS344_20200; phage(gi401723016)     8.42e-12            BordetellabronchisepticaMAEELREWEKTFPDELWQEFGRLTNWSGPLHSRPRWWGKLVIELIYDTLDPDVAKYLKNNKPAPGIHWHRQLSEDLGARQLVSRCFEVVGMAKTCHSIRELRDRVAEHYGHNTVQLTLTLPRSQR
complement(4289721..4289960)       type II toxin-antitoxin system HicA family toxin; CS344_20205                        N/A                 BordetellabronchisepticaMSRWKRPLTCKEVKKILANLGFSHRSTEGSHENWIKQGNLRRWKVTVDCPKAPFSDFLIKSMASQAGVTVKQFYAALDK
complement(4289957..4290286)       PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; CS344_20210; phage(gi966197839)     5.82e-19            BordetellabronchisepticaMKNLPLVLRVYGERSNGQWSLICLDFNLAVQADTLPQAQQRLHSMIVGYLRDALEGEDRPYAAQLLTRRAPLGFWLKYYLAKLRTCVAGQSGGRRVAGSEAIPMAPAGA
