gi|00000000|ref|CP024173.1|  Bordetella bronchiseptica strain D987 chromosome, complete genome. 5193581, gc%: 68.20%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(3110200..3111504)       PHAGE_Bacill_G_NC_023719: gp258; CS345_14605; phage(gi593777714)                     1.32e-162           BordetellabronchisepticaMPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFDGLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATLDELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVEGDGKPLLIYADESEAASGEKAGRGEVRDAAA
complement(3111609..3112262)       PHAGE_Bacill_G_NC_023719: gp257; CS345_14610; phage(gi593777713)                     1.14e-61            BordetellabronchisepticaMQRFTDFYAAMHGGSSVTPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVLTSRAQT
complement(3112265..3113575)       trigger factor; CS345_14615                                                          N/A                 BordetellabronchisepticaMQPVVETLSGLERRVDLAVSVAEVEKEVQAQLKRVGRTAKVAGFRPGKAPLAMLERSHGPGIRYDVINSLVGRAFEQAVDGAKLRVAGSPTLTPKTEGVADDTLAFTATFEVYPEVTVPDLSALAVTRYDTPVTDAEVNQTLDVLRKQRAKFETREGRASQDGDRVVLDFAGTIDGVPFEGGKAEDFPFVLGQGRMLPEFEEAALGLKAGESKVFPLKFPDDYQGKEVAGKTAEFTITVKEVAEGVLPEVDAEFAKSLGQAEGDVEKLKADIRTNIEREVKARLQGRTKGSVMDALVEAGKFDVPKALVDSDVEGRIAAAREELKQRGVPNADSVPMPAEVFSTESERRVRLGLLVSELVKQAQLQAKPEQVRARIEEFAQNYEQPAQVVSYYLADRQRRAEIEAIVLEDNVVAHVLENAKVADEKVPFDQLMGMA
3113754..3114332                   PHAGE_Caulob_CcrColossus_NC_019406: UPF0114 protein; CS345_14620; phage(gi414088293)     1.56e-32            BordetellabronchisepticaMARKPPMHPIQEPRLGPLPALIFSSRWLQLPLYLGLIVAQGVYVLLFLKELWHLVTHTLSFGEQEIMLIVLGLIDVVMISNLLVMVIVGGYETFVSRLRLEGHPDQPEWLSHVNASVLKVKLAMAIIGISSIHLLRTFIEASNLGSPNSRFTETGVMWQTIIHVVFILSAIGIAYVDRLTSQSVGHGAHPSH
complement(3114430..3114636)       PHAGE_Lactoc_bIL312_NC_002671: Csp; CS345_14625; phage(gi13095918)                   4.95e-21            BordetellabronchisepticaMATGIVKWFNAEKGYGFIMPDDGSKDLFAHYSEIRSEGYKSLQENQRVSFEVGQGPKGPSAKNIKVIA
complement(3114982..3115548)       DUF924 domain-containing protein; CS345_14630                                        N/A                 BordetellabronchisepticaMSDSMAGPAALPDAATVLAFWREAGPARWYAKDEQFDRTFTMRFEAAHMAAARGELMAWSASAEGVLALLILLDQFPRNAYRGTGHMFATDGLARQICEQAIAAGLDRQGPEDLRQFYYMPLEHAEDLAAQEQCVSLMAPLHAETLRWAEIHRDIIARFGRFPHRNTVLGRATTAEEQQFLDQGGFSG
complement(3115632..3115835)       PHAGE_Lactoc_bIL312_NC_002671: Csp; CS345_14635; phage(gi13095918)                   4.05e-21            BordetellabronchisepticaMETGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKGPQATKIQIL
complement(3116142..3116462)       hypothetical protein; CS345_14640                                                    N/A                 BordetellabronchisepticaMDISSHLLAELANGVCLETRVDGQTIGTYVVLGPADLDAIADIVPRQRVEEGADIHAAAVDSVDGAQMEIDQVIENMNPGDVAVFFCADGDCYGAALDLLGLPVDE
complement(3116504..3116785)       hypothetical protein; CS345_14645                                                    N/A                 BordetellabronchisepticaMVYEDFFWFMAALVALALVGGALFGRLGRLAHSVIAMLGLAIAVGVAVLLGARGEDVGPYAPLLAIAAFMFCLMIGGAATLVTRRVRRRHLTH
complement(3116860..3118107)       PROPHAGE_Shigel_301: serine protease; CS345_14650; phage(gi24114232)                 1.07e-09            BordetellabronchisepticaMKPTSILARLPRYLGACALAALAVAPLAPAQAQTPLPAGLGAAEVRQYLSGLPSNALRQQASWLAPALLRPYLSGLTDAQLRQYVQALTPGQITQGLAALTPAQRARLQREFERQARRQVQQAVRAEVAARSARAVAMGQSASMLLLDAEMGTLAQRQGDLRRGHDEGAFWARGSANRFKVDTPDTPAFDLRVEYLTLGADHGWRLDTGRLYLGAYAGVSRARMDDNDIMHGRIESRFLGTYLTYVDNGGFYVDAVSKLGRIDESVSFDLPLGLGDYDDDISHTTYTGSVEAGYHFKLPQRWFVEPQAQVIYSRSSQTSVQGRAGVRAGRDFTLAGGATLRPYVSASYLHEFSHDDSVDFGGKSYDAELPGSRWQLGAGAALDVGAHRAYADLRYGHGANISQDLSLNIGYAYRF
3118490..3118819                   DUF4148 domain-containing protein; CS345_14655                                       N/A                 BordetellabronchisepticaMKTLATALMLSLGLLSAGAQAAPNAEPNNLPYQGVYGQTDANAPTRAQVQAELAQAKANGQYTFGELEYPATQTGSTAAPSRDQVKAELAQAKASGQYTFGELDYPPRN
3119036..3119055                   attL                                                                                 N/A                 GTTGGTGCGAAGGGCGGGAC
3119146..3119817                   PHAGE_Pseudo_F116_NC_006552: hypothetical protein; CS345_14660; phage(gi56692976)     7.90e-39            BordetellabronchisepticaMCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSSFFMINAKLETIERHGWPWKLMIGTGRILVPADGWYEWKALDSGPKPAKQPYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
complement(3119824..3120024)       hypothetical protein; CS345_14665                                                    N/A                 BordetellabronchisepticaMVDAAAWQQRDDYYWSGPPGWTICRVWVDGGYRHELWQSRGDVGTLVGSRATLAAAQALYEQQAAR
3120023..3120652                   alpha/beta hydrolase; CS345_14670                                                    N/A                 BordetellabronchisepticaMIRPLLGQKRGQVERILCSHILYVHTVFLGHNWPSSMTEFQFELVARLLGTPGPARAAARQVLVSGQSPTAAAELQGCGEDELQQVLAEIETAVLDIRGAFVLHTPADFRVTVGHHDHHRRPGAIAFAAGDVVRLVAHSTERWIPVRVIATPEQPGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
3120652..3120933                   hypothetical protein; CS345_14675                                                    N/A                 BordetellabronchisepticaMPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAQPRKG
complement(3120930..3121463)       PHAGE_Salmon_II_E1_NC_010495: tail protein; CS345_14680; phage(gi170676285)          4.00e-09            BordetellabronchisepticaMSLRAVVGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQELAAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAVDLLAYMLSRVSGRAEALAGVADRARIAGLTCERAYEAVRGNVRP
complement(3121445..3121996)       PHAGE_Escher_Rtp_NC_007603: putative endolysin; CS345_14685; phage(gi81343992)       2.21e-13            BordetellabronchisepticaMRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTVCKGVTKHTSPYPVVVGDYWSPERCAEVERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRGRKRFVQGLRNRRLEERALCLSGL
complement(3121975..3122217)       hypothetical protein; CS345_14690                                                    N/A                 BordetellabronchisepticaMEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATGKQHEDEESCDLEEE
complement(3122222..3123034)       hypothetical protein; CS345_14695                                                    N/A                 BordetellabronchisepticaMIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGSGRRARVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLGLDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGLIKVRAGAALDKHGYALPHRMIVNDGATVLE
complement(3123034..3123297)       PHAGE_Rhodob_RcapNL_NC_020489: tail fiber protein; CS345_14700; phage(gi461474986)     1.85e-13            BordetellabronchisepticaMMKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV
complement(3123516..3123932)       hypothetical protein; CS345_14705                                                    N/A                 BordetellabronchisepticaMSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGVPATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
complement(3123937..3127893)       PHAGE_Pseudo_PS_1_NC_029066: tail protein; CS345_14710; phage(gi985757719)           7.85e-52            BordetellabronchisepticaMPDITIQRDPFRPHLRQETIVAPQGVRLDTVLRREGFIVGRGKSLVRTRTFVVQLNGSWKVQSAWHVRLRKHDVVAVVVLPAGGGGSNPLQVVAMAALAAATAGVGAWAASAYAGAAGVAATSAAALTVGAGAATAVGLVGGMVVNSLFPPARLPGSLQREKASPTYTLSAQGNMARPMEAIPARYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDILLPKGLFYAAHDGTLESAGTGVNVYARQIDDSGKPIGTTIVLGRENIVAATLTPQYRTFRYKVEPGRWEISVERNSGHLAERATRMIRDVTWLGLRSYLPSQRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSQDLKPTRNPAWAIADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQIARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVTRSFSVDYVFPAHDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRAQAWREGMALLARNRDQRRFASFQTELEGAIPGYADLVEVSHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPAGPFRVEPGTHEREMRIVDLVDGQGLYVSTGEAEEPTHYTFGPGERRALLAQVMRAVPSEAGLWTLNVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTVFSGPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTWQGNVSASAAPPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDVAGQLGPWYPDGQGVLGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAIAANGAGATAVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSSPFVIQNGQTFLNQAFIGKAWIKSAQVESLDAGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLGRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGAAMITWISDALPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR
complement(3127886..3128275)       PHAGE_Achrom_phiAxp_1_NC_029033: hypothetical protein; CS345_14715; phage(gi971821777)     3.42e-41            BordetellabronchisepticaMTSSDVNRYIGLMWRLGGRGPDAYDCWGLLRECRERYFEGGIPETALGEQARALYAHKMRTGAWKIVTHPQHGDGVMLRAGNDPHVGIYLDLDGGGVLHALEGRGVIFSPMRALFTMGFSQPIFYRIHA
complement(3128272..3128805)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS345_14720; phage(gi985757717)     3.59e-09            BordetellabronchisepticaMSLEQALKEAYASAPQDRVVFDTLELRHPAFVDPHGEPTAVRVVLGYEDIRARLETEAPLDGGQDVMFQAGAFRFRLPGFEEGQVPSLLIAIDGASEQIVDHVEAAVQSRFPIYVTYRPYLSTDLSMPQMNPPITMELNKVTVTGSSVSGTATLSDVHNWAFPHERYVRERFPGLFR
complement(3128872..3129231)       PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; CS345_14725; phage(gi374531665)     1.37e-05            BordetellabronchisepticaMPLPVWPAGLPLVEFSRQPISPFQRTEMDSGRSRHRRHSRVYPIHAPVSFVLDGDQYDAYQRFCSIDLNGYAGWFLMAINGPGGLKLRKVRWLLPVPREERIPGDLWRVSGQLETMSDA
complement(3129241..3131841)       PHAGE_Xantho_OP1_NC_007709: putative tail length tape measure protein; CS345_14730; phage(gi84662610)     6.65e-63            BordetellabronchisepticaMADEVASLVLRVDSTQAKGASADLDKLAVAGAKAEQATAKVGTAGKAAATGLGAMGKAAKAAQAQTAAATLSVGEMRTAMRSLPMQMTDIAVGLSTGQSPFYVLLQQGGQLKDLFGGIGPAIKAVGGYVASLITPFTAAAAGAVALAVAYQQGAEEGRRFTAAITLTGNAAGVTESQLAAMANRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLAEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYDQVKALEAEGRTQDAARLALNTYAQAMEERYPQVVENIGDLERAWKAVTDVAKGAWDAMLAVGREEALEQKLAQARKNLQSLETSRFRTFLDDDRIKQLRGEIAGLEELDKWQKAAAKSRADQAGAVARGIQARKDLDSYLESHKGASLAASMEAENAAFKKATAEFKQNSDEYKKALKLHVARVAQIQRQFAGSKGAVASGVRELERAREQEAALRAQLESAVKITSARQELVKFEQRIADLKARDQLSADEKSVLANEQALRQQLELNAGLADQITLKKEAVQLKVLERSAQETLIADQQRYNDLLAGLTASPRLREQLHAQQQIYRDFQRQVQRAAEQNEAKEITPQAYADRVRVLKQSLERRLELLADHYNKARLLEKDWKEGARQAFNDYAELVSDVAKLTRSAFANAFSGAENALVKLVVTGKARFADFADSIIADLTRISVRQSITGPLASALGSVFRNAFGSALPATASWAMPELAGRRAMGGPTLPRRLYEVAENGPELYDEGGRTYLLAGGDGGHVTPLTHSSYRPSTPVTVNLHGVESQPQVRARPDARGGLTLDLIFRQVKDQLAHDIDSGMGSLPRALERRYGLSRQLA
complement(3131867..3132157)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS345_14735; phage(gi985757709)     4.96e-17            BordetellabronchisepticaMYRPMPDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFDGVRVMESAALRMMNKK
complement(3132175..3132504)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS345_14740; phage(gi985757708)     8.85e-15            BordetellabronchisepticaMSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSDASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQARRKN
complement(3132514..3133032)       PHAGE_Pseudo_PS_1_NC_029066: tail protein; CS345_14745; phage(gi985757707)           2.00e-29            BordetellabronchisepticaMKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNSRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNHDELYYLVYPSFDSDPSMELDANMQNTATFSMMSDFTRYAPLAS
complement(3133287..3133787)       PHAGE_Xantho_phiL7_NC_012742: P07; CS345_14750; phage(gi238695594)                   2.29e-35            BordetellabronchisepticaMNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYMHGAWPTQHIDHMNGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEGCSI
complement(3133795..3134217)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS345_14755; phage(gi985757706)     2.66e-34            BordetellabronchisepticaMSQDLIRAAFEKRLSDWAKARTPALPVAWQNTKFTPPAAGVYLRAYVMPAATISRDAAGDHRQYRGVFQVNVVMPIGDGSRSAEQVAAELDALFPVNLVMQSGGLAVRVRTPISNGQPTTGDADHTVPISLGYDVQFYPE
complement(3134214..3134612)       PHAGE_Salmon_SETP13_NC_022752: putative tail protein; CS345_14760; phage(gi557307690)     6.19e-31            BordetellabronchisepticaMSFTADLGKFVARAKGNVDTATRQATVLLAQGVILKSPVDTGRFRANWQFSAAGVQRGTTMAIDPGGQVTLHRLVAEIRQTAAGGVTYLSNSLPYAVRLENGWSKQAPQGMVKLTVQEFQQYVSQAAKDANK
complement(3134609..3135004)       PHAGE_Pseudo_PaMx74_NC_028809: putative virion structural protein; CS345_14765; phage(gi971745311)     4.87e-08            BordetellabronchisepticaMATFDYADMAATAQELLDEFGGPVTVRQIVTGEYDPDLGQASTTTVDNDGIGALFDYTAQAAGLANMAGSVIETGDKQMYLAPELAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLFELQLRQA
complement(3135004..3135204)       hypothetical protein; CS345_14770                                                    N/A                 BordetellabronchisepticaMGNFLRLVLPTPTDAPGLQDCRGIRLYTADGAPIPGLVAVKLEAGTDEPIWRATLIMDVNVSGKPD
complement(3135206..3135688)       PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; CS345_14775; phage(gi100013)       4.72e-20            BordetellabronchisepticaMPLIVEDGSGLANADSYVSVADCQAYAADHGLAFAGEAAALEAALRNATLYLDGEYTYRGERATDIQALEWPRTVATGVPREVVNACCELAARALKSPLWQDVSGTTVGAAIEKTVGPITTKYANAAGARNDGQTRYAGVTAMLRRWLSSYGSSVKLVRC
complement(3135751..3136008)       hypothetical protein; CS345_14780                                                    N/A                 BordetellabronchisepticaMKAKLPIWYLPGPFYRYEQDVKAEAAKAGVRIVDANATEDRKGAAKDVPKVTLKPEYRPKGKAEAAKEKELEPTPKDPVKDPAKA
complement(3136018..3136986)       PHAGE_Pseudo_PS_1_NC_029066: major capsid; CS345_14785; phage(gi985757701)           7.87e-151           BordetellabronchisepticaMSISQMQVFNKYFMPAIIETLGQQIQKFNAASRGAIMLTTAGFEGDFLQESFYQAIHGARRRVDRYAANGSASPTDLTQLKHSSVKVAGGFGPIRYEPSQMTWLEKPTAEGIEVASRHFAEALLQDQLNTAIAALVAAISNQALATVNVSAKTGLNYSVLNDAHAKFGDSSGLIVANVMSGQVYHKLIGQNLVNAQQLFEYGAVTVVDILGKTVVVTDAPALYATGTPNLQKVLGLVAGAATVSDGGDLITNIETSNGKERIETTFQADYTFGLGLKGYTWDEATGGKSPTDAELATGTNWDKVATDIKHTAGVIAIGDASK
complement(3137013..3137615)       PHAGE_Cyanop_KBS_S_2A_NC_020854: hypothetical protein; CS345_14790; phage(gi472341499)     3.61e-05            BordetellabronchisepticaMPLDRNDPEVKALIEEVTAEATEALSAKNKELIAELRTAKAKAKGSEIDPEEHARLQTQVEELTGKLEKATKDSARQIEKLTKDLTEKEGALTQHLIDGGLSTALAKAGVAPHFMDAVKAMLRSQTSIKDGAAVIGDKLLDDHVMEWASTDQGKHFITAPANTGGGGQGGNGGGKCTGNMGGSREDRVAALKAKFPELSG
complement(3137739..3137981)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; CS345_14795; phage(gi985757698)     7.87e-23            BordetellabronchisepticaMPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCHRCGAREVIETRIGVFESGRSWSGGTKVLLCALCFVRGERVVLK
complement(3137987..3139039)       PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; CS345_14800; phage(gi985757697)     1.99e-119           BordetellabronchisepticaMRYSNGVVRRIIALLNRVDIDLAEQVARAMERLPASAFTVARLDAVLKDVRNLNAEAYRQVRGELEKDLRDLAGYEVGYQSQLFESLGIEFTTRGVTAGQVYVGAMAQPFQGRLLREWMAGLESGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKGYADGLLEIDRRNAEAVVRTAISHTAGLARDRWYEANDDIIGALVWVSTLDSRTSQMCRLRDGLQYTTDHKPIGHRVPWGAGPGKLHWCCRSGSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYAEWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFARAGVK
complement(3139068..3140486)       PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713: portal protein; CS345_14805; phage(gi428782116)     4.09e-68            BordetellabronchisepticaMPVDSKHPLWTASQPRWERCRTALQGQDAVHAAGTKYLPKLAGQEQEEYDAYKGRALFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVVKEVIDVTRVGVLVDYPVASGEFMTVGQAQAVGLRPYLATYKAEAIINWRTARVSGVNQLVLVVLAETYTEQKDEFTAEEKTQYRVLDLADGAYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVTGHELQAGQSLKIGSSEAWVFSEAEARAQYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPVGLTAQDLTALVGALQAAAISPETFYDNMRRGGIIDDGVTFEEEQARIEAAGPALGTLGGQDGQPANRAV
complement(3140489..3141766)       PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; CS345_14810; phage(gi100002)     0.0                 BordetellabronchisepticaMPSLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKTDKAALAWRKIIARLRHTAPGLINGVDVTTTPEGFKFVYQQFVKQVRERPDLVALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYPNFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPAVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQAYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
complement(3141753..3142124)       PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; CS345_14815; phage(gi100024)     3.75e-13            BordetellabronchisepticaMARPKKELPDLGQIEALASKGLNEEQIASALGISYSTLRRHKASNEQLQAALKKGKALGIADVSSALYDAAVGGNVTAMIFYLKNRSPDSWRDKPDSTNDDNAPPPVKVVIEVKDASVPDAEP
complement(3142203..3142430)       hypothetical protein; CS345_14820                                                    N/A                 BordetellabronchisepticaMPMAGAVRPSETKPRADGRGFCFAGSGLSRITAPGHRLARRAPARDIKARGAFSPASSLDLVDENRTRPARSVGG
complement(3142443..3142883)       hypothetical protein; CS345_14825                                                    N/A                 BordetellabronchisepticaMKTPKLLLDRLPSDFHARLENWGEVMRSRPHYAVSPTYEVCRRLAKRAGQGAWGGEEDMRELDESDAGLIEAAWRNSVYRMLHQHRDILRAHYVTRSYWRATCRALDLRSREYDDVLVRAVSNFEDFVARYAVVMHNPAQDRPTTV
complement(3142880..3143083)       hypothetical protein; CS345_14830                                                    N/A                 BordetellabronchisepticaMTWARRSERGDPLKVLERRQEPPPLRSCAGCAHIRLVKSEFDGCRILACGHGMQVGQRCRLFEERGR
complement(3143080..3143763)       hypothetical protein; CS345_14835                                                    N/A                 BordetellabronchisepticaMTHVDLIAGQPAGVPLDPLAGTLAGSHARVPTFDLEKINTDVADPWARGGAETAPDAAPRRANAGSTVVPELGPNVTILALDLGTKLGWAVRGRDGRTSHGTEVFTPRASWSPGQRWLRARSFLVEVITQRQVHAIAYEDVKRHTGTDAAHAYGAFLCIVEMLADSHRLRLLPVGVGTIKKHWTGKGNADKADMIAEAKARGFRPETDNDADALAILSWAVAQERAA
complement(3143760..3144701)       PHAGE_Entero_ES18_NC_006949: gp61; CS345_14840; phage(gi62362274)                    7.60e-56            BordetellabronchisepticaMSQIISSNDVDFQAYMAEAEPQAKVLAAEAWRDDLVRTVEHGDQITGAKLPWSKTHDLLRFRPGEVTLWQGINGHGKSELLGQACIGFATQGERVCIASFEMKPQATLKRMLRQTAMNARPGVQAVDRLIDWSRDRLWLYDQQGTVTPAMLYAVIRYCADRLKVRHMVIDSLMKCVRGEDDYNGQKDFVDMLCTLARDLRMHIHLVHHAKKGENEDQVPGKFSAKGSGAIVDQVDQMLTVWRNKKKERIAEAELRKDGEVSADTHDSPDTLLICDKNRHGEWEGRIQLWRHADSLQFTGDKRRQPLDMIGALA
complement(3144698..3145069)       hypothetical protein; CS345_14845                                                    N/A                 BordetellabronchisepticaMIGHQSLIAARMGGYRPTDVWLTCLTAEQPCGRFTHPEAQLGQMTNGRWVGFPDIHIHDDENAAALDLRVVVGLVVHIVAPSRSRAMQLLRRVRDFSPAKAIASGEWGILLWDPAADLQELRV
complement(3145066..3145890)       PHAGE_Salmon_epsilon15_NC_004775: putative DNA replication protein; CS345_14850; phage(gi30387421)     7.82e-13            BordetellabronchisepticaMANDWIKMRTDLYRDPRICVMADILMNEDGELARYVNQHCQRHMSVTRNVMRNVTVGALVSVWGVMRLRGKAEGTDLVCRAVTTSVLDDIADLPGMGAAMEAVGWVVSTAEGLVFPRFFEDHNVDPDASPKSKSAARQQRYRERQKLESDVTRNVTRNVTRDAKVTPREEKSREEKDNPQSPLPGAEGWRLPDWIPADPWRQFEEMRRKKKKPMTDAARKLAVTKLDALRAAGHDVATMMDQSILHAWDTFYPPKADAALQGALGSDQPWTGAV
complement(3145890..3146306)       PHAGE_Burkho_phi1026b_NC_005284: gp74; CS345_14855; phage(gi38707964)                1.11e-18            BordetellabronchisepticaMNLARRTPMSRKTPLRASTGLARAAIKRRAPKKRPGYHDPKYLAACRGERCYQQFAGCCSYKGDPTVVPAHQNQGKGTGLKVPDRFTVPACYHCHTLYDQSGLDREHKRATWDWGYTRWEPVCAAKLTANDDKMKEAA
complement(3146303..3146752)       PHAGE_Halovi_HVTV_1_NC_020158: hypothetical protein; CS345_14860; phage(gi443404620)     2.47e-27            BordetellabronchisepticaMTALERFLSKVERAEGCWQWKGAKKATGYGNFYLDRKYIGAHCASFRLLVGDIPAGMYVCHTCDTPSCVNPEHLFLGTPAENQADMARKGRAVGMRQGGEHHPMAKLTIAQVNEIRARRAAGEKLKDLARSFGVSESNVSVVANCRSWA
complement(3146752..3147159)       PHAGE_Pseudo_PS_1_NC_029066: NinB DNA recombinase; CS345_14865; phage(gi985757678)     1.17e-37            BordetellabronchisepticaMRYPLNSRTRQRAHRDIDAAPDGHYFAPPVEPTRTLGQSAKLHAMLADVARQVEWPVNGKMEHLSVGDWKAVVVASLMQEKRMAAGLRGGFVILGKRTSSMTIREMSDAIEFLYSFGAEQGVQWSEPVDVPGWVR
complement(3147162..3147470)       PHAGE_Burkho_KS5_NC_015265: gp9; CS345_14870; phage(gi327198007)                     5.64e-21            BordetellabronchisepticaMNAPVPVHFHMQKPSMERAFRQALTDPSTRAKARDRLGWDDSQVSRFLSGQMGLTIDKIDAAIEVLGMVVTSPDYMDFLAYGAKIGANCHCARAGMGECGTR
3147558..3147722                   hypothetical protein; CS345_14875                                                    N/A                 BordetellabronchisepticaMTETEKLLNHAQEIARRAFDDPSEKTVMDLFDELRAERDRRAWEGSDAAGATVH
3147808..3148062                   hypothetical protein; CS345_14880                                                    N/A                 BordetellabronchisepticaMEEQELRHRLAVAEGNIAGLVAVIGALVRQLPEEQRLHLEARAEAMFEPLEAAMLGDADPYSDSSLAGLRNVRTMLSDLLSRSA
3148077..3148775                   hypothetical protein; CS345_14885                                                    N/A                 BordetellabronchisepticaMSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAVVGRPQGVPAERRIGGSYTFLIYAGETRLKLFHRIALYLWRDRYDYDPTRGCPGEQNNISLWTRLRPARNRLIAVLLNGQLWLAFLGGGFAIGAALLPGYLDRVKTGQQVNTNAGELLLRCVQEANHVLRCRPVSDGQDEIVSDVDGPSLDSNRPGRESPAQNVKHE
complement(3148939..3149136)       hypothetical protein; CS345_14890                                                    N/A                 BordetellabronchisepticaMVELGYDVKSDAQIRQWRIRHNRRVPSPENCVGLELATAKQIRRQDLREDWPRVWPELAEPQEGA
3149730..3150359                   PHAGE_Pseudo_F10_NC_007805: Repressor protein; CS345_14895; phage(gi148912804)       1.04e-09            BordetellabronchisepticaMRIGGTPAPWEPGGTTTRQMERHSQGLRINQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPEHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGWHQASGW
3150498..3151520                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CS345_14900; phage(gi157166018)     2.98e-107           BordetellabronchisepticaMVMHMAEKKVAGRAAGGAARAKSLTAEQRSESARKAAKAKAAKAKLPIATHGSTDHPLRLGDIDIPCYVLEDGTRLLSLTGLNGALKISSGSTRSGDSRLVQFIESDSIRPYAKNQLAEALRKPIEFIPPHGGRSAHGYPATVLADICEGVLAAREAGPLTATQQAIAKQCEILVRGFARVGIIALVDEATGYEKDRAKNELAKILEAFVAKELQPYVKAFPTDYYEQMFRLRGLKYPPDNPRFRPQYFGVLTNDIVYSRVAPGLLEELKKQAAKDEKKAHLHRRLTQEIGHPKLREHLASVVTAMKLSSDYPDFITKLNRLHPRFEGQSTLDLEDADKG
3151718..3151930                   hypothetical protein; CS345_14905                                                    N/A                 BordetellabronchisepticaMIVVHTFDGSDGDYRSPRPGYPFGMRVRADRRYWLAWACAGKRTPSDCLPGVMDDFGTLVPVPAPVFSEA
3151933..3152310                   hypothetical protein; CS345_14910                                                    N/A                 BordetellabronchisepticaMQPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
3152307..3152489                   hypothetical protein; CS345_14915                                                    N/A                 BordetellabronchisepticaMSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
3152493..3153479                   PHAGE_Entero_phi80_NC_021190: phage recombinase-annealing protein RecT; CS345_14920; phage(gi824479614)     6.09e-77            BordetellabronchisepticaMNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDLAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVSTEPPPDDGKTIDEPPRDPSDDGFGRDDQGGIQE
3153476..3154123                   PHAGE_Pseudo_PS_1_NC_029066: recombination exonuclease; CS345_14925; phage(gi985757656)     2.59e-26            BordetellabronchisepticaMNRYILSPHEQGSDGWLLDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFADFVSFDPRFPEELQLFVCRFTPTAKELADHEKAVLQFLAERDELVAQLKRLAA
3154154..3154165                   attL                                                                                 N/A                 GAATCCCCAGGC
3154212..3154547                   hypothetical protein; CS345_14930                                                    N/A                 BordetellabronchisepticaMFSINQQECRMHFDSNTKKDDQPSATLQFTYRTSNDVLSEFSPDLKSSLYRRPRQDEGDMADNADPRLDDPGYLPCLKFPNMQNKVALSEKVVGATVTVHHGIGGKSDLTME
3154889..3155122                   PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; CS345_14935; phage(gi966197833)     1.60e-20            BordetellabronchisepticaMDSILAGVEAAARDGKYEYQTREHGFGDGACYSSEERWPELNKAIVKALRALGYRADVRVHEGQFVDLWLSVTWGEK
3155182..3155571                   hypothetical protein; CS345_14940                                                    N/A                 BordetellabronchisepticaMTGALRDRIATHMHGAFAALRLSPSAEAFDALANIVNMVGLTVQHDPAFLQQYLLINGAARTMNQIGAKVEAGIALRDHEIASLTVAVSAIDDILPRIDVARLFINEHIAVALVRAGQTQGAQPCPTTR
3155553..3156281                   hypothetical protein; CS345_14945                                                    N/A                 BordetellabronchisepticaMPYDPMNQVHPGPLEGIDRIPAAPGANTPEAPVTVALDPDPRGVSVGVWQGSRCIYSGAHPLPAAPGSPAAVAPGDTQDEDERAIFEATFGLPAGIKWGGTRYVVDPEYDNSYLANTFVGQWEAWKVRARLAALAAGHVLQQFTISASDRFELTGAVGLLRGFGCVGPAAALQRALEAESIRFNASGVDAAEAAQERLHTFLNEAAGAGFELGGVAAGELYIDLFPQRYAARISAQQHKGDE
3156314..3156673                   PHAGE_Escher_HK639_NC_016158: hypothetical protein; CS345_14950; phage(gi356870653)     9.96e-05            BordetellabronchisepticaMEEYSGPKDGEFYDGKTWRPGIRFEVRDSGYLYDPDQVAIADGMGQMVLEVVSRHKPGKFPERTFFLRSFVDPNGRAFGKARLRVTTTPAFKRMAAGYRHEFEMAAQPTTSAKGPDHGR
3156804..3157703                   PHAGE_Burkho_BcepC6B_NC_005887: putative methyl transferase protein; CS345_14955; phage(gi48697223)     5.63e-103           BordetellabronchisepticaMAGAAYYNEIDPYAADWLRNLIAAGHIAPGDVDERSIEDVHPDDLRGYTQCHFFAGIGVWSYALRRAGWPDDRPVWTGSCPCQPFSAAGKGAAFDDERHLWPDWHWLIQECHPPVVFGEQVESRDGLGWLDLVQADLEGLEYACGAVVTPAAGYGAPHGRGRLYFVAHPNGQRQQRRAQQNFRQIQSGQQAPRRDDALRCGNLRGMGNAESERWQRRPDNQDQRRRERSFGPAGAVGGFWSNAEWIYCADRGGVWRPVEPGTFPLVDGAAARVGRLRAYGNAINAVQAQIFIEECMRCI
3157700..3158635                   hypothetical protein; CS345_14960                                                    N/A                 BordetellabronchisepticaMTTQNNAAQPVLTDEEIQDIAELYDIYGEKPEFARAVEFALLHKLRAPVALRLPPRESENCGSSSAIAYAMAYNKALDDVAAINASAPVADERAALQRIVETAKDGANSGDRHARCVEIARATLASAPVAGEAVAWAVFAPNGNIRYWHHDKANVEAFAAKHGLPVTGIADAAPQASSVAGEAAGEIVLFGSDLKEVSWRDGKMPPAGTKLCVAPQAPAGWRWTLHPAGLHPDVYAAAAAHTSDEARNAALYAIPAKIVCRSTSGRWCTAWISRPTIRAAMSARSRSAHGCAGILRHPPPWPRNRELFEIL
3158816..3159481                   PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; CS345_14965; phage(gi374531705)     9.69e-61            BordetellabronchisepticaMRERPILFSGPMVRAILAGTKTQTRRVAKPVRHPDLGNVYTPGALALEREPQHVIDRTCPYGQPGDRLWVRETWNRFEPWSGTHYAANYDGFGIGPDDDPDHIPDHKVRWRPSIHMPRAACRLVLEVTGVRVERLQDMTLDDLCEEGISELLEDPDSVPGRAFSRAEHAAIGGVPMQHIPEMYGFAALWDSLNGSSSWSANPWVWVVEFRRAGTKDGASHA
3159474..3159593                   hypothetical protein; CS345_14970                                                    N/A                 BordetellabronchisepticaMPDLPYLALLGIAVGAVVALALALHRWLSREIEKEEREE
3159594..3159794                   helix-turn-helix domain-containing protein; CS345_14975                              N/A                 BordetellabronchisepticaMEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
complement(3159791..3160780)       PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; CS345_14980; phage(gi109289985)          8.98e-60            BordetellabronchisepticaMGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGGITPKTVAQVLQRYCDEISPRNKGHRWERVRIARFLKEEADLCAKLIHTISTADLGAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRERIYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRAVALFKSLAGLDDAKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD
3160873..3160884                   attR                                                                                 N/A                 GAATCCCCAGGC
3160946..3160965                   attR                                                                                 N/A                 GTTGGTGCGAAGGGCGGGAC

#### region 2 ####
3639241..3639260                   attL                                                                                 N/A                 CCGCCCTTTGTCCTGGTCAC
complement(3644628..3645989)       PHAGE_Bdello_phi1422_NC_019525: putative TerL large-subunit terminase; CS345_17245; phage(gi422936857)     1.00e-50            BordetellabronchisepticaMSTLRISVPRKLKPLLGPKRYKGAYGGRGGAKSHFFAEQVVLRCLVRPTRVVCIREVQNSIKDSVRQLLIDKIEKLGVSTAFEVLESEIRGPNGSLIVFKGMQSYNAANIKSLEAYDIAWVEEAQTLSQHSLDLLRPTLRKEGSELWFSWNPRFKTDPVDAFFRKSPPEDAISVLVNWRDNPWFPDVLRREMEHDFAVDEDKADHIWNGAYGSSQGAILAKWVNRAERDGRIHDDIEFDSEGSPIEVSSDLGFRDTASWWYWQRVPGGFNLLKYEGDSGLDADDWIPIIQESVNSLGAKGVGKVWLPHDAKAKTFQSRHTTAEKFLAAFGAGKVSVVPQTKKMDQIGAARVVIQRCAFNKTLCEDGIDGLIAWEFDWNEETNVFSREPLHNWASHPSDAFAYGCQVMQDFNEPPKLESARFPVLHDGKRMRTGVTMDELWRESDRMSKRVSRI
complement(3646913..3647272)       hypothetical protein; CS345_17250                                                    N/A                 BordetellabronchisepticaMRSRYEQSKINGALREVAIDKLSQMGVKVGPASRSDYLARRINDVMSWDLGGDAMAVIRMFVAHKPADVTPGKYIPTHRRPYRLDATLRYQADRAADSQPPLYALSSNIFEHRDIGTGG
complement(3647274..3647615)       PHAGE_Burkho_Bcep176_NC_007497: gp8; CS345_17255; phage(gi77864633)                  1.79e-49            BordetellabronchisepticaMNRSYGLGRLKSGSMNKTEQAYAAYLNQLQTVGGILWHKFEGMKLRLADNTFYTPDFAVMRPDGQIELHEVKGFWQDDARVKIKVAADMYPFKFLAIKARAKKNGGGWEVEEF
complement(3647612..3648280)       hypothetical protein; CS345_17260                                                    N/A                 BordetellabronchisepticaMQLTESQTSLGALVVSEMRLMYGAKFGQQWQGLTPRELKDSWDQKLTGMTEAEIRAGLVACLSRDWPPTVPEFLRLCRPWLNPEVAYHEAVHGMSCRRRGEMGNWSHPAIYWAAVATGTHDMLNSTYGSIKQRWEKSFSDELSKGNWSDIPPVRSALPAPGQTMATKAEAAAALQRMGAAKALEESGRNPKRWIDKWQQRIKNGERPSPAIAAMLKRAMEEA
complement(3648267..3649052)       PHAGE_Cronob_phiES15_NC_018454: putative replication protein O; CS345_17265; phage(gi401817576)     3.16e-15            BordetellabronchisepticaMDWFRMYAEFATDPKVQMMPEAMQRRLVMLLCLQCGNGIETFHETERESSIAFALRISEAELAETKELFMRKEFINSDWTLRNWDKRQYASDSSTARVRRHREKSKKATETDETFQERSCNALEQNRTDTEQIKEHPPTPRKRGSGFDASAIELPAWLDLVDWQSWVADRKARKKPITEEGARRQLKQLADYRADGHQPADVIANSIAGGYQGLFPPRGQIRASSPSRAQSMADWNAELGEVLAEGRRPSVIDMGTIDATH
complement(3649052..3649411)       PHAGE_Entero_P1_NC_005856: Ref; CS345_17270; phage(gi46401630)                       1.82e-11            BordetellabronchisepticaMKGRSPTAAQKRFHDLLCQHVGCIACRKEGLFNSWVSVHHVDGRTKPEAHWLVLPLCAGHHQDGTGGKWMIAVHPHKARFEAKYGRQRGLLVECIEWLQSHEFEVPEGALSAAGMLEAA
complement(3649408..3649848)       PHAGE_Pseudo_AF_NC_019923: putative recombination protein NinB; CS345_17275; phage(gi431810328)     5.43e-21            BordetellabronchisepticaMEKEELMQPRKVRLTPATRPMAVQAIYSAPDGYYFEPPKEPTRSLDQNAKLHAMCGDIAKQMPWMGRKLSTDDWKRLLVDAWMRETGRHGAQVVPSLDGKGIVALGVQTRGLGIKAMAELIEYIQSWGDISGIEWSESFHIPGWVK
complement(3649830..3650144)       PHAGE_Phage_Gifsy_1_NC_010392: probable regulatory protein; transcriptional activator; lambda CII analog; CS345_17280; phage(gi169257256)     1.06e-06            BordetellabronchisepticaMNAQPVSSNDVESTRKIGARLYSEFLQRLADVTQERAADFMGASASTVSRMKEDVEKVCHLLAAIDFQLAPSDAVVVDQREQQAIESLAFKYLQARQETWKRKS
3650176..3650337                   hypothetical protein; CS345_17285                                                    N/A                 BordetellabronchisepticaMTETESLLSKAQDIALRAFEQPTESAVMDIFRRLCVEADEARMQSDAYAGALH
complement(3650343..3650570)       PHAGE_Salmon_SEN22_NC_028696: putative repressor protein; CS345_17290; phage(gi966201352)     2.39e-08            BordetellabronchisepticaMKPISIIRQRLGVTQAALAVGIGVTQGNVSHYERGQTIPPDVARRLIDFARSQGLSLTFDQIYAPEPEEVPQEVA
3650654..3651373                   PHAGE_Pseudo_F10_NC_007805: Repressor protein; CS345_17295; phage(gi148912804)       2.05e-16            BordetellabronchisepticaMTRSTPRKAKVLPVHVDEAAALKRLYQDRVKISQAAFGAESKIGTQGAVWQFLNAHTPLNADVAVKFAAALGIDVRSFSPRLADEIEGLTVGIEASLSNPDADHALVHMVDAKASAGRGTIVFAGDSTKELMFRQDWLLKNGAKPEDVLAFEIEGDSMIDMHIVPGSVVLVNRKKVDPVNRKLFMLWHDGELYIKQLIKHGDQWLARSHNAEHTAKYPDFPLTASTKIEGRLFWCGFGL
3651505..3651732                   PHAGE_Entero_ST104_NC_005841: ORF62; CS345_17300; phage(gi46358710)                  1.99e-08            BordetellabronchisepticaMQAIECHGAAQGPAACYKKAGDICGAKGYDILGREGDKIPTSSGYAYANQHHGMYVQEDGMTVHRTLYIRCKEAA
complement(3652725..3652964)       type II toxin-antitoxin system HicA family toxin; CS345_17305                        N/A                 BordetellabronchisepticaMSRWKRPLTCKEVKKILANLGFSHRSTEGSHENWIKQGSLRRWKVTVDCPKAPFSDFLIKSMASQAGVTVKQFYSALDR
complement(3652961..3653290)       PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; CS345_17310; phage(gi966197839)     2.24e-18            BordetellabronchisepticaMKNLPLVLRVYGERSNGQWSLICLDFNLAVQADTLPQAQQRLHSMIVGYLRDALEGEDRPYAAQFLTRRAPLGFWLKYYLAKLRTCVAGESGGRRVAGSEAIPMAPAGA
3654040..3654789                   PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; CS345_17315; phage(gi971764756)     1.36e-30            BordetellabronchisepticaMKFEIKNRWTGAVLFTADVPDETKSGLITRVALEQAVAGGTDLSGADLSGAYLSGADLRGTDLSGADLSGADLSGAYLSGAYLSGADLRGTDLSGADLSGADLSGAYLSGADLRGTDLSGADLSGADLSGAYLSGADLTPIRDDMWAVLSATPAEVPALIAALKAGRVDGSTYEGECACLVGTLANAREVGFNGIESLEPDSSRPIERFFMSISRGDTPETNQFSKLALEWAEEWLARMQAAFLPKGTA
3654830..3655027                   hypothetical protein; CS345_17320                                                    N/A                 BordetellabronchisepticaMHANLNLCRRVYRLAESFGHAFSANVYLSLRADGWNAEGALQYARRAYCGQAKAYRPRELRQDYA
3655829..3655905                   tRNA                                                                                 N/A                 ACGCCCATAGCTCAATTGGATAGAGCCCCGGTGTTCTAGTCCGGACGTTTCAGGTTCGAGTCCTGATGGGCGTGCCA
3656089..3656340                   hypothetical protein; CS345_17330                                                    N/A                 BordetellabronchisepticaMEDVSPAQAIRDILAVLRGNEHEAHGYDAQGFAEQLHNYLIRETEDEISLAFAILSPFSPEGIAFRKRWMDTLYAMVNDRVLP
3656337..3656567                   hypothetical protein; CS345_17335                                                    N/A                 BordetellabronchisepticaMNPYLILWSLALVALVAGDEFFYRRFLRDRDARVAVFTVAAVLTALVFGYGEVQQRDESTLTACEGCGKTAVAAKE
3656664..3657608                   PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; CS345_17340; phage(gi100039)     6.00e-85            BordetellabronchisepticaMKFEKAVRKKAKLRLALTGPSGSGKTLSALLLAKGLGGPIAVLDSERDSASLYAEPIRSPSGALIEPPDFDTLSLSAPYTPERYIEAIQAAEAAGYNAMIIDSITHEWSGVGGCLELVDEIAKARYRGNSWSAWNDVTPRHRALLDAILQTPMHMLVTLRAKTETAQQEGQNGKKNVVKLGMKAEQRDGFEYEMTIVLDLAHDGNYATATKDRTGLYKGKDPFVVSEQTGVDMRTWLESGVEVPVSTTPELLSQDQVDDHVAAINAAADEEGLKKAYVTAYKAATASNDTAAITAFTAAKDVRKATLAPAQEAA
3657608..3658085                   PHAGE_Burkho_Bcep22_NC_005262: putative single strand DNA-binding protein; CS345_17345; phage(gi38640325)     3.60e-50            BordetellabronchisepticaMASVNKAILVGNLGKDPEVRYTPDGAAVCNISIATTSVWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSIYIEGRLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDGDEPRSAPAERPRPSGTANARAAYTPPTANASAGQSGRSRRRHPFLA
3658096..3658602                   PHAGE_Deep_s_D6E_NC_019544: gp157-like protein; CS345_17350; phage(gi423262358)      5.64e-27            BordetellabronchisepticaMNMPLYALTQEYRALAVRLAEGDFDEKAVADTMEASGLPEQIGDKAQGCEMVARTFEADIPAIDAEIKRLQELKKARQARADALRDYLLRNMIASDIQVIECPLFRISIAKNPPAVEVFDEKQIPADYFISPPAPPPKLDKTLIAQALKDNHDVPGARLRQGVRLAIR
3658691..3659026                   hypothetical protein; CS345_17355                                                    N/A                 BordetellabronchisepticaMFSIHQQECRMHFDSNTKKDDQPSATLQFTYRTSNDVLSEFSPDLKSSLYRRPRQDEGDMADNADPRLDDPGYLPCLKFPNMQNKVALSEKVVGATVTVHHGIGGKSDLTME
3659368..3659601                   PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; CS345_17360; phage(gi966197833)     1.60e-20            BordetellabronchisepticaMDSILAGVEAAARDGKYEYQTREHGFGDGACYSSEERWPELNKAIVKALRALGYRADVRVHEGQFVDLWLSVTWGEK
3659661..3660050                   hypothetical protein; CS345_17365                                                    N/A                 BordetellabronchisepticaMTGALRDRIATHMHGAFAALRLSPSAEAFDALANIVNMVGLTVQHDPAFLQQYLLINGAARTMNQIGAKVEAGIALRDHEIASLTVAVSAIDDILPRIDVARLFINEHIAVALVRAGQTQGAQPCPTTR
3660032..3660760                   hypothetical protein; CS345_17370                                                    N/A                 BordetellabronchisepticaMPYDPMNQVHPGPLEGIDRIPAAPGANTPEAPVTVALDPDPRGVSVGVWQGSRCIYSGAHPLPAAPGSPAAVAPGDTQDEDERAIFEATFGLPAGIKWGGTRYVVDPEYDNSYLANTFVGQWEAWKVRARLAALAAGHVLQQFTISASDRFELTGAVGLLRGFGCVGPAAALQRALEAESIRFNASGVDAAEAAQERLHTFLNEAAGAGFELGGVAAGELYIDLFPQRYAARISAQQHKGDE
3660793..3661152                   PHAGE_Escher_HK639_NC_016158: hypothetical protein; CS345_17375; phage(gi356870653)     9.96e-05            BordetellabronchisepticaMEEYSGPKDGEFYDGKTWRPGIRFEVRDSGYLYDPDQVAIADGMGQMVLEVVSRHKPGKFPERTFFLRSFVDPNGRAFGKARLRVTTTPAFKRMAAGYRHEFEMAAQPTTSAKGPDHGR
3661283..3662182                   PHAGE_Burkho_BcepC6B_NC_005887: putative methyl transferase protein; CS345_17380; phage(gi48697223)     5.63e-103           BordetellabronchisepticaMAGAAYYNEIDPYAADWLRNLIAAGHIAPGDVDERSIEDVHPDDLRGYTQCHFFAGIGVWSYALRRAGWPDDRPVWTGSCPCQPFSAAGKGAAFDDERHLWPDWHWLIQECHPPVVFGEQVESRDGLGWLDLVQADLEGLEYACGAVVTPAAGYGAPHGRGRLYFVAHPNGQRQQRRAQQNFRQIQSGQQAPRRDDALRCGNLRGMGNAESERWQRRPDNQDQRRRERSFGPAGAVGGFWSNAEWIYCADRGGVWRPVEPGTFPLVDGAAARVGRLRAYGNAINAVQAQIFIEECMRCI
3662179..3663288                   hypothetical protein; CS345_17385                                                    N/A                 BordetellabronchisepticaMTTQNNAAQPVLTDEEIQDIAELYDIYGEKPEFARAVEFALLHKLRAPVALRLPPRESENCGSSSAIAYAMAYNKALDDVAAINASAPVADERAALQRIVETAKDGANSGDRHARCVEIARATLASAPVAGEAVAWAVFAPNGNIRYWHHDKANVEAFAAKHGLPVTGIADAAPQASSVAGEAAGEIVLFGSDLKEVSWRDGKMPPAGTKLCVAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAAHIESKKPVGTIALVVQAFADEVRTLKSTPAPTAAEGSEDDMLTIAYLAGARAEKERAGDALLAELLDDPLLRDLLGYIEDTGPADVWGAAQAWMAKRNAALAARKEGDGNAN
3663572..3663652                   hypothetical protein; CS345_17390                                                    N/A                 BordetellabronchisepticaVDAATRRAIVRAAAELGAKMQEAAHA
3663645..3663764                   hypothetical protein; CS345_17395                                                    N/A                 BordetellabronchisepticaMPDLPYLALLGIAVGAVVALALALHRWLSREIEKEEREE
3663765..3664019                   PHAGE_Cronob_phiES15_NC_018454: putative excisionase; CS345_17400; phage(gi401817567)     1.45e-06            BordetellabronchisepticaMAHAAQHQATAPTSPARTAMKWVKINKYCELSGDTPDAIYAKNRRKIWTEGVHYKKAADGCLWINLEEVDKWVEQDQSQSRRAA
3663977..3665239                   PHAGE_Cronob_phiES15_NC_018454: putative integrase; CS345_17405; phage(gi401817566)     3.68e-78            BordetellabronchisepticaMGRAGSEPKPPRGVTIRELKDGPRLQIAFSYRGEQCRELLPAGKVTKSYMEYAAGLRAEIRRKITDGTFSYRAYFPDSPAAARMEPSPTAIPGAKLLLGALLDAQLALYEKQAANGSISASTLLGYAKAIKHYLRPRWGDTPVNELAPADLRAWIAGMGVTGKTVRNRLTPLRSVLDDAVNDELLDSNPLDRIALGKLIKQTATKSNYEVDPFDMDEVAALCKAARADELPLIQFWFEAGLRPGEIQAVEWSSVDWVHGRVRIDDNIVTGMVEGKATQVRKAPKTQAGIRDVDLSPLALAALKAQKAFTFLAGGRIWHDPRKNEPWASDAQIRKSLWLPLCKRAGVRYRNPYQMRHTYASTRLTAGANPWYIADQLGHTDVEMVFKIYGKFIPKNFQRAGAFTPVSHADQAADKTGTVSG
3674340..3674359                   attR                                                                                 N/A                 CCGCCCTTTGTCCTGGTCAC
