gi|00000000|ref|CP024996.1|  Herbaspirillum rubrisubalbicans strain DSM 11543 chromosome, 5617593, gc%: 61.50%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
851442..851486                     attL                                                                                 N/A                 CTCATAATCCGTTGGTGCCGTGTTCGACTCACGGGGGGGCCACCA
complement(851510..852583)         PHAGE_Escher_HK75_NC_016160: phage integrase family protein; RC54_03805; phage(gi356870702)     4.20e-69            HerbaspirillumrubrisubalbicansMPVRKNPSSGIWWIDIRAPGVPRIRRSSGTTDKQAAQELHDRVKADLWRSTKLGEEPDHTFDEAALGMLKLAEGQSDYESKVRHVQYWRVALGASTPIRSLTAGNILQKLPTHTTHKHRKAKPVSAATKNRYLATIKRILTLATEWGWISRPPKLSKFQEPDKRVRFESKPVIKALIDAISIEWMRDIALVAVTTGMRADELLSLEPKSVDLPNRNAWVIAEEAKSGYARAVPLNADALAVIERRLKTAQQYVFERATKDGKPAKISQIDDRCFKRACALVQITDFRFHDLRHTWASWHVQAGTPLLALKELGGWETLDMVQRYAHLAPSHLAHHAETVTFWSQQEAETKTPLRRVV
complement(852796..853284)         hypothetical protein; RC54_03810                                                     N/A                 HerbaspirillumrubrisubalbicansMSDTNQLRQAVKLMLDVMPNSPIFSAVQVNDLIVDMEGAAAKPLDLESPLTGLVAGVVLTQEQVNSIRRLVDSAANDDRHRERSLATGVLHCAKCSLHATLVGKAYSQAKEEGCPNGCGPLWPLTWEQHTQKLEARVTELESSLNANPIALSRPDTNCPPRG
complement(853463..853750)         hypothetical protein; RC54_03815                                                     N/A                 HerbaspirillumrubrisubalbicansMEAPKNARVLKRLRVDIYQVQKSMFVYTGEQLIKVETLGLSPLFGSRFAAVKALRKIRKTHPTAMLLHKKVHFTSSGMGARTALLALLIRPGECP
complement(853737..854153)         hypothetical protein; RC54_03820                                                     N/A                 HerbaspirillumrubrisubalbicansMSRAQTPATSADLQSAISMLSAALKGIGATSPLAPADAKALEEMPPTIEKALPDYSPNIVLTGDRAKRFSWSVSDIADLTTSLESSSKHFPEHFALTPGQVAPVLAVETFTAGITKRLELLYSMMSNEDEQEAANGGT
complement(854150..854446)         hypothetical protein; RC54_03825                                                     N/A                 HerbaspirillumrubrisubalbicansMKLVNTPELRAHRRRITQAERLYVTFFQVQKGMARIQDGKLCLVDVAFLSPPLSSRYKAKKRLRQIRKTHPTAKIVSHTAAFDEEELDVRKEFKRSIK
complement(854443..854763)         hypothetical protein; RC54_03830                                                     N/A                 HerbaspirillumrubrisubalbicansMKTAIILTHAAFDRPKVVNPIFRGPKKGCLNLGKLRRQLRATQHWEFHGSRQGDQAPANAIRPPCPDLEHLQELYQTADEKGADWILSSVEFAVQAEEKRRKGVAK
complement(854760..854996)         hypothetical protein; RC54_03835                                                     N/A                 HerbaspirillumrubrisubalbicansMSRNSSTGASSVKVVPPTIDEIETVCEQQKELMRVLLDMACELNGTGAGRVVTLTSLAKNLSESAHRMVVAYREEVAK
complement(855062..855289)         hypothetical protein; RC54_03840                                                     N/A                 HerbaspirillumrubrisubalbicansMLHSTAELLQAKQIEIARVANDLEITAATIASLVELAERSLAEETPGIETLVQVTARYAADLTKISQRLLEINKQ
complement(855457..855879)         PHAGE_Strept_TP_J34_NC_020197: putative CI repressor homolog; RC54_03845; phage(gi444475878)     1.32e-08            HerbaspirillumrubrisubalbicansMSIHARIKQLREARGMSMLTLADLVGVSAWQTVQQWEKEDGTAPKRERLAAVAAALQTTPEYLLFGDGGSSASTREKKRVDYTDVFAASEAGISMTALRVAQSFDKLDSTEKKQAILAQLKAFGFPIDDSEDDQNFSYKK
855964..856203                     PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; RC54_03850; phage(gi100049)      3.15e-09            HerbaspirillumrubrisubalbicansMNGIEKTIAHFKSLSGVARALNLSGYQVVQQWRESGRVPAEYCPKIEELTEGEVRCEELNDRVNWAYLRQTSVASTAVG
856206..856625                     hypothetical protein; RC54_03855                                                     N/A                 HerbaspirillumrubrisubalbicansMLTHVPIGPMPDGTYAIGYSTPGCSVMTVVSTGMTKQRAQEEAARLNEEQQARADKILRDQEHRNRVLGLTPAIDYLPDWMPDTPVAIAARMKVADAEQQKRAAAIERDRQLQMRPETLRPVTDYLSEIELADGAEEGE
complement(856658..856843)         hypothetical protein; RC54_03860                                                     N/A                 HerbaspirillumrubrisubalbicansMLFSANAGGPLSCLFPDTPLPLHFLSDIGFSTLHLLGRSLRKIFLARQPRGPAIQDLVHIG
complement(856896..857144)         hypothetical protein; RC54_03865                                                     N/A                 HerbaspirillumrubrisubalbicansMGNEELSDLLRLECQIDALKKVNEAAWKLLSPKQKDTLLKQLNSQLQYAADMAPAQQVSDAVLEEREFQLAALIARLISTSH
857253..858329                     PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; RC54_03870; phage(gi100045)     2.92e-22            HerbaspirillumrubrisubalbicansMARTQNSPQVEDGFIRIANELLEAILAFGFTQRELLVLLAIMRKTYGFNKKADDMSASQIAGLCNMARSHVTATLGSLASRNIITKSAGTFGSVIGIQKNHRKWVGNDLFTTPPSGTDSVQGGTDSVQVGGTDSVQGHDDGENDGNFASESTSFALEAAPLLDSDGTDSVHPGTNSVHVPIRCATGTDSVQVGGTDSVHTKDTIPKDTKQKTSSSSSGDDVRLCPIGSLVNLYHELLPKNPKVLQVTEARKKSIRARWGEAATLEAAPFGYESKTAGLDAWRSFFAYCAKSDFLTGKVPGRDGKKPFRAGLDFLFSPSGFAKTLEGTYHDGIAPVHAASSAHADGESWRRDPRFAGAK
858326..858733                     hypothetical protein; RC54_03875                                                     N/A                 HerbaspirillumrubrisubalbicansMSAIPKGAQAIIDARIRGQKPDELILVSLIGPVAEANHTVFVNPNGAYDWRWVIGLQLCLMVNAATRRAARDLLLTIGKNSPSQLHVWNVDQFQGVRVVVLPSPADIEKPRVAWRWAMEFEPWPDFDNENFAWSP
858721..859671                     PHAGE_Pseudo_AF_NC_019923: putative DNA primase\helicase; RC54_03880; phage(gi431810342)     1.53e-63            HerbaspirillumrubrisubalbicansMEPMMHTIPDDIDFSAYMDEPPAEHRVVPASSLLDSVIDHFFKPSDAPKIQMGWRKTHGDFEFRPAEVSLWAGINGHGKSQVVGQVSLDLMDQHQRVCIASLEMAPPKVMARMARQAGGRLDVTVPFLKAFHRWTDNRLWIYDHVGSSDPRTILAVIRYAVEKFGVQHFVVDNLAKVIAQEDDYNGQKAFVNSLCTIAKDTGVHVHLVLHVKKGDSEHRMPGKFDIKGSGAIADLVDNIFIVWRNKAKEDEIRKGNHENVDAPDCIVNLEKQRHGETEGSYGLWFDPNSMQYLESRLDRPKVYRIDPGLTAAQVEF
859674..859970                     hypothetical protein; RC54_03885                                                     N/A                 HerbaspirillumrubrisubalbicansMLYPATLSADLQYLAQRYAWNDEDKSEVRAAFTDNPEMVHFFTVLAAAHRAGYEQCASNGFIRLQAWCADQGIGDPFAAGFDLPALDAMALHLRKEHA
859967..860899                     PHAGE_Cronob_ENT39118_NC_019934: hypothetical protein; RC54_03890; phage(gi431811055)     6.38e-29            HerbaspirillumrubrisubalbicansMRTKQTVPEDVRRRVLELRHTCSLQEVSRHTGVPLGTVKTICSRSGVFRDNPKHRALFALPPIVESESRQLAVPTMPPQEKVTGDKEIDAVLWLQQVVATGQADLIAKAMEALKKIKTPMAILEKRYRDFVMRKNPGNLFALLPTIGFGKLNDQAERAVSRNASAQEAIARFGSEDACFISTPAEEFIIALLKEVDFIGEDDFGLPQLTDEVKTCFQQVSDYLPHTLSDCLHELRYWNDLYRLRHALDPNCGDSIHEEWVRRDFIFHLMATIRPKDRDEAATVMRFMFDDDDGNHMDKKEARDILLNLVG
861071..861421                     PHAGE_Pectob_PM2_NC_028940: hypothetical protein; RC54_03895; phage(gi971758283)     2.39e-07            HerbaspirillumrubrisubalbicansMTKHYIGTKNVLAWPEVKDGKEGYAVKYSDGYTSWSPKDVFEAAYIDIGHVGHLPPHQQRVVGEKAELDDKLIKLTGFIGTPIFAGLDELEQGRMREQARFMLAYSNTLGARIAAF
861480..861941                     PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: endodeoxyribonuclease RusA; RC54_03900; phage(gi970580075)     8.89e-08            HerbaspirillumrubrisubalbicansMKPITLTLPYPLSANRYWRPVKLGTHISIVPTKEAKQFRTEIGWLVKKAGITTPMPGRVQIDVRLYPNRPQDWQKRQRLHGAIWDDTVMCIDLDNANKVLLDALKGVAIEDDKWVRRIVAERMEPDEKGARVVLTITPLGVAQPQAGLFGEAA
862215..862415                     hypothetical protein; RC54_03905                                                     N/A                 HerbaspirillumrubrisubalbicansMAAQDDDLFHGYHLGIQLVGDAIHTKIEYQCNRYRQTVMESLIQTRDRQIREKLIELGWTPPPDKP
862624..862863                     PHAGE_Burkho_BcepC6B_NC_005887: hypothetical protein; RC54_03910; phage(gi48697191)     1.07e-05            HerbaspirillumrubrisubalbicansMRIDWFNVFADLKRAGWSMYRIDEQLNISKSTLMGWKEGAEPKHFDGERLIQLWTDVTGQKREQLPVERRMPSAYQARR
862937..863386                     hypothetical protein; RC54_03915                                                     N/A                 HerbaspirillumrubrisubalbicansMATKSNVTKVQVPGEASAPTPAEAGDQAADMAGNDSAAGAGDGAGDPLTLDAGGTEGATVVNVDALREENEELQARLDAQADELAALKAQLANTPAQPLQKAEPLRAGGAGRNDFKHLRADQVDVGTLKRPVQTKDGWLVPPKIFNEKA
863389..863640                     hypothetical protein; RC54_03920                                                     N/A                 HerbaspirillumrubrisubalbicansMCGGGGAKNPAPTVDPAAERQNATDLAREATNAKLAEQTRLRQRQTVLASGAGASSPSGGAALGGTGAVQSVLATGKDKLGAS
863643..865247                     PHAGE_Vibrio_phiVC8_NC_027118: head to tail connecting protein; RC54_03925; phage(gi824479686)     1.62e-60            HerbaspirillumrubrisubalbicansMENRATAILRRKSAMQSARSIYEQNWKDGYDYSFPERGDGFYGEKSDGGALQAKRARLFDSTATDAGQILAASIMTGGTPSNSRWLSLTTGQDNDEEARWLDNAAEVIWQNIHASNYDSEGIDACLDMVAAGWFVMFCDSLAEGGFNFQLLPMSSSYIAASKPNGPADILVHEYCLTAEQAVTKFGKDAVSEKIRKCCEEGGNPDEKFRFIWSIFPRVSAQAAGILAKNLPFTSTHVDCDSKTVVKESGFHECPFWAPRWSKLPGTVYPVGPMYRAMPDVKQLNRLVYLEDMNADIAISGMWIAEDDGVLNPRTVKIGPRKIIVANSVDSMKPLTSGANFNLSFSKKEGLQAAIRKILMADQLPPVDSPVRTATEFQLRVQQIRQVLGPVFGRMQPEWYGPMVVRCFGLAFRAGVLGQPPQSLANRSFNVEFKSPMAKSQKMEEVSSIESSLNSIGLIAQAKQDQSVWDVVDLDEAARQIIDGRGAPASITRSKENIAQLRDQRAQAQQQAVQQQQQHELAQKTVPIAMQQASK
865244..865480                     hypothetical protein; RC54_03930                                                     N/A                 HerbaspirillumrubrisubalbicansMNEPYKPTPSDYKLIFEDHKVGAAILEQLTRVFARPAVVQGGIDAVLQTYHRDGSRRVLEHIVSQINRANGVSEEEEA
865481..866932                     hypothetical protein; RC54_03935                                                     N/A                 HerbaspirillumrubrisubalbicansMTIDATLTQDGWVVQPINAGVLSAVKDPQTNTIGLINPAGGPPIAFPVGGGVPKRHKKPGLQRLAFFDKAANVGGGSAANCADVALDRFYPFTGNTSVVFTVPSASTFRFSQAAVLSTPLDMTNGQIHISMIPSVNASIAATPTAMVLELYSAGTPASPGTKFISADIRAELLAKISTPGCFGCFSISVAEINTLNGGAVLTDKQAVLFAMLRVTYAAGSIGGQMALGAIDYVPNASTTAPVLLCFDDGYLASNLVAKSIMDKAGLVGVLYADPLSNSFTGTQTIPRMTTADIDRFVAAGWQMASQRYSIEGDNAAMSNEVWLEYQKANLNMRRSMGWPGGEDGSWYGGAANPFNNGNTDTLIAKRRYAQRLYRTIRGYYFNPLSVTETWPFGDPMAVRSCGFNAFGNSSAANVGANTMGCLTKAGASKGAVVFTLHGELDNAFNNNQALTDANIAAFQAIVDTVVANPGTYKNVTMMDLAPS
complement(866960..867202)         hypothetical protein; RC54_03940                                                     N/A                 HerbaspirillumrubrisubalbicansMKLNSSPSPPVPAAPAASTLPGAAAAPPPSPPPPAPAPAAAAPPASPPPAPPAPPSPASCMRTYQFLRMIFMFASPVKFD
867147..867881                     hypothetical protein; RC54_03945                                                     N/A                 HerbaspirillumrubrisubalbicansMLAAGAAGTGGEGEEFSFIPEKLRVSSEDGKFDLAASSKKMAEAYGNLEKRFGSGDVPPKSAEEYAVTVPDAFKESWKPEEDQSFQDFRAKAFEAGMTQKQLDLVMGQYFDMAPKLVAGAAVMDSTACTTELQKEWATPATFQRNVGLAYSAASALAGKAGMDVQQIMTGPLANNPQFLKLMAALGPELAEDKNPNGGDVMSADAIEDLMASEAYTNPGHKDHARVSQKVKAHFEKAYGTEAAA
868083..868949                     PHAGE_Pelagi_HTVC010P_NC_020481: putative major capsid protein; RC54_03950; phage(gi460042266)     5.99e-26            HerbaspirillumrubrisubalbicansMPQSITQAFVQQFDTSIRLQAQQRRARFEPRVTDRGNIVGESFTANRLDVLADTPENTTRHGDTVWSDANHTTRVALMRDFYQALPVDRADEPKVLANPSGSYMDSLNAAWNRRKDQIIFSAAIGNAQAKDGTLIALPSNQIILNGGTGFTKAKLITAKKIFRSNEADEQADVPEELSIAYTSDMLEDILSDTTLTSADFMAVKMLQSGDVSGKWMGFNWVPYEKVQNTAGVLRTMAWAKSSIHFGTGFFEGRAQRRGDKKDTLQLSAAGSVGAVRVWDYGVVAIDFV
868996..869454                     hypothetical protein; RC54_03955                                                     N/A                 HerbaspirillumrubrisubalbicansMAEVNTTQGAKIVNRTPKLLPHESFGRKRILAAKMPAAFAQLAINDTIFIGRVPSGSRFTLNSKVSCAAGTASSTIDIGIRSTATGTVIDADGLAASVNTNAAGQKDANTGALIASGAEYVTTEEVDVYATVTGAVLQANQALKFEIEYVND
869537..870103                     PHAGE_Burkho_BcepC6B_NC_005887: hypothetical protein; RC54_03960; phage(gi48697201)     5.57e-24            HerbaspirillumrubrisubalbicansMPSAVSICSNALLKLGAKTIASFAEGSDHATLASNLFPSVRDSMLRAHYWNCAIKRVLLSPLTQTPAFDFAYQFSLPGDWIRTVQVGRKGYQIPYRSEGRNILSDAAQLPLVYVFRNENPASWSTNFIRVMEQAMAAEMAYAVTASSSLRDSMNAELQQMLKVAKAIDGQDDPPEEFEEGSLVESRFS
870119..872293                     PHAGE_Burkho_BcepC6B_NC_005887: hypothetical protein; RC54_03965; phage(gi48697202)     1.10e-80            HerbaspirillumrubrisubalbicansMPRVNIIQTNFTAGEITPRCFGRVDIARYQNGAESLENCMVTIHGGAFRRYGSGYQAAAKIAERICRLIPFVFSTTQAYILEFGHQYVRFFNQGGGQIISGGVPLELTTPYTEDMLRQIDFTQGADTMLIFHPDVPTQMLRRLGAASWRLEAAPFTTVPFDEVGERFNTALTINDPTVGGSRTFTAGAGVFLLGDRDRRITYEGGSAIITGFNSANQLVGTITSPFPGTSVPANEWVLEDSPQDAITPGAKDPVGITISVTSTGDAFRASMVGRFIEINSGLLYVNGFVNAQSIQANIIKALDSVTGAPKGAWKLLGAMWNEFDGYPNTGAFYEQRLVTGGSRGYPQTIWGSQTGVFFDYTIGTDDSDAFSFTLPSTGQINPITRMASTDVLLMMTYGGEYTATGGVEKPLTPTNPQLKPRTRYGCNNVKPILVGDELIYVTRSGKKVRAMSYNYASNSFPSPNITTLAEHLVKPGIIDMGYQPEPDGRLWCVRTDGKIAALTIDRDEGVTAWSPLSTDGIYESVAVIPNNGIDEVWVSVQRTIDGTVRRYIERFDESLLTDAAILGTDATGKTLWTGLNHLEGKEVGVRADGTYAGKFTVTDGAITLPRAAKSVEIGMVYVSRIVPLRPEIQTGTGTAQGSNMNTSQATVLVHETIGGKINGKKMTQRRFGSDLLDKAITPFSGLDRIGILGWERGDSPLVLEQDEPLPFHVLCVVRQFTVNS
872290..872748                     PHAGE_Pectob_PP1_NC_019542: acyl-CoA N-acyltransferase domain-containing protein; RC54_03970; phage(gi423262072)     1.65e-15            HerbaspirillumrubrisubalbicansMIRPATLDDLRAIVLMGEALHRESPRWSRLTYSRAKAADMLARLITQPWGLVLVAEVDGEIIGGIAAIATSHWSSTDVVAEEVSFFMKPEHRGSLAAARLICCMKKWAELKGAVWLHAGTSTGVNPERTAQLYEKLGFTRCAIGLEVLNDGN
872765..873262                     hypothetical protein; RC54_03975                                                     N/A                 HerbaspirillumrubrisubalbicansMLAATAAGAYSTLEAGRKQANAQQAQQQELVNQAAYDKDAAVAQADKIRRAAAQQQSQARAQLAGSGAAVGEGTAVTINDTIDLNANQDAYTALLSGSRSAGTSLRQASAYGQAAADSASASYLNAASSVLATGAAIGKGWKTPASSAPSSLGSGITAPANALIG
873275..875269                     PHAGE_Burkho_BcepC6B_NC_005887: hypothetical protein; RC54_03980; phage(gi48697205)     1.14e-59            HerbaspirillumrubrisubalbicansMQINLGNFGNAVAQPERAAPVQANTATEQALGNVARAGQQLAVTFQQVDEQKQRMQAASSLASLNNDLHDIYDSVSRDVQAGVIKPENAVDAYNGRAADARKARTDGLTPYQIETMDPHLTSTMGTLTRNLQGVAIKKTQDDIGADLLNTGETLQRQAMRDMPGAIAQYKDMVNIMGPKAGWNELQMAKAIQGFTENASFNFANATLEGAAQTGDKALVQDALAKIQGPDGEMIDPHKRTSLITKAYGYINGIDAAAQRDADRAQREQQARENAAVDVYNSNYDMAMKGRYLSTEAINALAEATAGTKMAGQAQELVKSQAKIAGFASMSLPEMRATVERMNAAGSDPKIGVTPLEQKVTEQFKSILSASEKAYAENPWQAAQERGAIKDAPTIQLNNIDDAVQVLRQRMSVIGQVEIKAGRKVSPLQPEEASQIARVIRMLPPDQQSGALASIGTIVPDADRLAALAKQMHDKDNVLGMAMMLAGDRTTQGRYSSELLLRGDRAIKDKAIMMDTAKETGWRGSIANLVGDAFPNQEVRQQVIDSAYLINAGIVADGGSSDPARALRLTVGSIVERNGVKVPLPRGMEEGDFEKRLKAVTAADIAAQTTDKVYAGAQAIPVADFVKQLPNAALVSAGQGRYNVKAGGTLVTNSQGQRITIRISP
875266..877569                     PHAGE_Burkho_BcepC6B_NC_005887: SLT domain-containing tail structural protein; RC54_03985; phage(gi48697206)     1.21e-83            HerbaspirillumrubrisubalbicansMIENMFQDGTDKVLDDRVARPVAEPPARPSFGLSLWNTTKALPKGVATGATESAAFGSDILGAFGAVQGGYGVQADPAMLFDSDMQQRVAGAEGQKAREDVQSGAAFTSETGTSLRATARTMMPDATTSNAAENILFGLGRFGVKAVAYSVLGTPIPGAVFTGTDEAFVEAQRLQEQGVDFETRTKAAIAAGGAAAAATALPVAGKTVGQTVGLVAAGGPGTFIAQQAASRAILQNAGYDKIAEQYDPFDPVGLAVATLIPAGFGAYASRGMRNARPVAAPMDAAASRELVQMGMNERQALRFDDARLDAYAVTAAQRAGVPPEVLLAAKNAGERSSSSAATSPVGAKGIMQFMDATWQQYGKGNVRDPVASIDAGAAYLADLGKQYGGDWRAALAHYNGGTLAGKAVQAGKAPPAAETRAYLERTDKFIAERQGTEAGRAAAADPEAVAAARVNLIRETVNSWNLKDPADIAGAEQHLAAFSRAADQLSAGERVAVSDTLNLDNLAQARMLDDFGARMEAMRATLLEDAGNVAEPGAIRSMRDEITALRQTIPAVDDAALRARAKEIQAEGGSYKQALATATKELNGRAAEINQRIDSLQQQIDRNAEATRANEQIAQIDQQIAQVRQQRAAIDAPTPKRGALAVQQALAEPPAKSAKSGTLESGKSSGTPAPENLPASPKATPQAAEGGKPAADSSSQASPVAAVLDGQTAEIGRLSPDMMIQLEGMDAPLPLAEALAKVKEEAAAEAKDAGLLQVAAECFLRNS
877606..880077                     PHAGE_Burkho_BcepC6B_NC_005887: structural protein; RC54_03990; phage(gi48697207)     0.0                 HerbaspirillumrubrisubalbicansMQQAAGRALTDSEIQKIDDAMSANMRRLARQDPAGWAAKSADQRVLEAAAAGMQDIQAAAALKVQRAQLQILRTASMESRVGDLMASYASGRSRALVHELDQTSLYIEGVKRENMARLVDLMEAATSKQGAGLGRQGLMLLFDAENPTMSRDLAREIFGNAAGTTGNKLAQQGARAWLDTIEGMRQRFNAAGGDVGKLDYGYLPQPHDQGRVRGKGDTAAQAEWVQRTLPLLDRRQYVLEDGSLMNDAQVSALLSRAWETLASGGINKIEPGKGGGRGARANAGAESRQIHFRDADAYLTYLSQYGGGSMYDAMLGHVGGMSRDIGLVERYGPNPEQQMRLQFDLAERSDNGIKRSFGLRPQSYWDVVSGKTGMADNGNIAQIGQDLRNIQTFGKLQGAVLTSITDLGTHFVTTGFNKLSYWDALKNIAAQASGETRDFLTMHGIIAETMVSDLNRWSGDNIKNNWSGRIANSTMKLSLMNAWTDTLRRSFSMTMMNGLAKLSKTDWGRLTEYDRWRMTSKGIDAADWAVIQQAQLTTHRGAEFLTPEAIRASGSPEADRVVAKVLGMITDESEYAVLNPDLATRTLSSGGGEQRGTMRGELARSVMQFKSFPIAMVSRHWRRMMDTPQGLEGAPIAANRVAYAGALFASLGMLGAIAYQTKQITAGKDPADMTTGKFWVKAIAQGGVLSIMGDILLADSTEEAGQYASKTISGLAGPTIGAAADLSLKVIKGNIDKAAAGKETHAGAEALTLARSHLPYVNLWYAKAALDHAGLHALQENLSPGYLSRMQQRARKDWGQDWWWKPGTGAPDRTPDLGAALGK
880094..880363                     PHAGE_Bacill_Belinda_NC_031024: hypothetical protein; RC54_03995; phage(gi100015)     8.87e-08            HerbaspirillumrubrisubalbicansMACGEQKPISMFYRRPNRPCGTVSQCKACKAIKAAAYRAANLSACKDRSLAWYRDNKEHSIKTTREWQEENKERVLKKRREWLAKRKGI
880364..880744                     hypothetical protein; RC54_04000                                                     N/A                 HerbaspirillumrubrisubalbicansMRQDQYLRLQELTEKLTDAFIREADPDKWPGAGMEVAAMDQQTRGDRYWSKKNAAATLTVMMKTTNLLGMIQLGGAEVGAPDAEKPVEEEASLDRDIAAAEAEAQKMLDKIQSTARKASGKKVHGQ
880734..882377                     PHAGE_Mesorh_phagevB_MloP_Lo5R7ANS_NC_025431: putative DNA maturase B; RC54_04005; phage(gi712913297)     4.05e-18            HerbaspirillumrubrisubalbicansMDNKPISFLAFFLLWAKVMKWEVPPLHVRVCHWLEHTDDPVRVLQVFRGAAKSSIFAVYKAWQLYCDRTWVSLIWAADGKLATKLTRDTINILRRHPLCGGMLPTKPGAQMFWVMGSIDARNASMTATGVDQNVTSARAKSIDYDDIEVPKNIKTAEARENLRDKIQEATFILVPGGQETYIGTPHTHNSIYPELIENGAASLKIPLFESSIRYEDTATRLRYRFPFTPGDDGLYVFVGIHKHAKLLVAGEDFAIDGQDVVFTKPPGKLLDIYAHCAWPERFTRDDVERRRKKTRTINYWDSQYMLEAKPINESRLDPADIKAYDVQPRLEYANRAVRMMLGKTHVVSGRAYWDPSLGKKKSDASAFSVVYDDSLGNHYWHVCKELTGDFAVFSDSRNTVIESGQVLQACDIIAKANILHVYVETNGVGSFAGKLLQRALKQRGLAVGVTEIQESSNKNERILGALEGPIRSGVLWAHIDALNGPLWDQMKDWKPEVKEQPDDFLDSGAGAVEQAPVRINKLVGKPTPETRQDWRQSTGVFEVTLDP
882609..883124                     PHAGE_Burkho_BcepC6B_NC_005887: putative tail fiber protein; RC54_04010; phage(gi48697208)     2.17e-05            HerbaspirillumrubrisubalbicansMTGGEKILLMRDMKLERDTDYQQNGEFPADIVNLDFDSIWLALQQYQADSNRTLKFPIEEQGGQTLNVTAAARAGKALIFDVNGNPTVSDDNYVDQAANAAASAAAALASQQAAAGSQAAAENASGTATVAASQALYYAQHGTGFTAGTAYDLGSVADPLNIFNTDLGSVP
883124..884044                     PHAGE_Synech_S_SSM7_NC_015287: phage tail protein; RC54_04015; phage(gi326783770)     2.84e-10            HerbaspirillumrubrisubalbicansMSTVLQLRRGTTAQHASFVGQPGEVTFDTTKKVFVGHDGVTPGGFPMARQASSAIGTSGHSGLIGANDATTPNSKFTVSSITATYRNAEGGTLTLYTGSTQTVDISQAGPVANGRDQSGTFGASAKVNLYKIYNGTTEALIASLAGPSVGPALPSGYTYWAYAGSVVLDGSANMRRMYMASSRMIFQSPPLVLSANPTLAVQSVSHAAYVPTLALDVVLNCYGSVTMPTAGEASNVIQLASGITFDRATSITENAGTGYAGYGRTVIVPNLPSQAVFSGWAYPVTVPTAVASNIAVQSFTVPNGAI
884046..884234                     hypothetical protein; RC54_04020                                                     N/A                 HerbaspirillumrubrisubalbicansMDEIQDIPKRSFRDKVTGVLVWWGFVEGDYPEWDDRIEDIDFDLEPGNWRFDEDLQEWVPYP
884231..884551                     hypothetical protein; RC54_04025                                                     N/A                 HerbaspirillumrubrisubalbicansMSDTKVIDTKLALAWLAPLGVTIVAGLITLVWMAAQQTSTINTLLETQREMKAQMGARDQRDEAFKAAQITAIAEVKLNDARQDIRIENLEKAVGAKPPPLGKWTK
884548..884799                     hypothetical protein; RC54_04030                                                     N/A                 HerbaspirillumrubrisubalbicansMKIQLVDDKGLIHRRWSVRLAKVGAAVMAGWAALTSAGLGSTLPIWVAQVVAGVILVCICGAAYLKQPEPAEKGQGDEAPPAA
884777..885178                     PHAGE_Sphing_PAU_NC_019521: gp261; RC54_04035; phage(gi435844764)                    3.83e-20            HerbaspirillumrubrisubalbicansMKLLLQREPSTKKSTAGKLFIDGVFECYTLEDIVRARGVKVYGQTAIPAGTYQVLLTQSPRFKRVLPLLLNVPGFEGIRIHPGNKAEDTDGCILVGDAPAPDWVGQSKVAFDRLFAKLRLTAEPITIEIRGAA
885175..885447                     hypothetical protein; RC54_04040                                                     N/A                 HerbaspirillumrubrisubalbicansMIDILLSIAPWLAGLIGIVAGLFMHQQAKATKAQAAQEVAETKQEVDDRNTAAAQKAAQATGERGNVENEIAAMPAADREQRLRDDWTRE
885428..885613                     PHAGE_Burkho_AH2_NC_018283: Rz1; RC54_04045; phage(gi399529079)                      9.49e-14            HerbaspirillumrubrisubalbicansMTGRVNNPVAVTPTIVDNGCNWTRPIFIDKTDKLSQGTVDQILAHNMTGQRLCGWQPSKKN
887560..887604                     attR                                                                                 N/A                 CTCATAATCCGTTGGTGCCGTGTTCGACTCACGGGGGGGCCACCA

#### region 2 ####
2329663..2329677                   attL                                                                                 N/A                 TGGCGGAGACGGAGG
complement(2336393..2336788)       PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; RC54_10540; phage(gi401817574)     8.12e-09            HerbaspirillumrubrisubalbicansMNKETLGARLRATRKAKQLTQAQLAQRAGLTQGTIGNIESGIRGYGESLLDIAKALDVDPAYLRMETDVKHQDSASNDSDVPGDLSARQVVLLQLFDGLTSKQQDEIIRTLEATKQANFELIEELAQRRHK
2336861..2337136                   PHAGE_Entero_c_1_NC_019706: prophage antirepressor; RC54_10545; phage(gi428781783)     8.11e-09            HerbaspirillumrubrisubalbicansMKPLDKAIDIARGVSRLADQIGVGQSVVSNWRRRGTLIEPLLCARIEKVTRGEVKRQDLRPKDWQEIWPELVASGPITRRDEPSDAGQGAR
complement(2337389..2338006)       hypothetical protein; RC54_10550                                                     N/A                 HerbaspirillumrubrisubalbicansMRDRPVRFDSHAIDDPTEDVEISRAFNLPNVGWLVDAHVLLIFWESRQPISMGSARIAIDVVSDAGNKVLRRIHAQTQPDSAIRGLEADTDFIGTIVYRRRIAPGRRHIHSWYPGLTVGLPVMPVLLVIDVDCEPRLQCLEETRHLGHAVIKLAGRHRSSTSHTPKFAFVLRLEFHNPFPFIVVFLIAWQSYASPHHSKNMRARA
complement(2338035..2338238)       hypothetical protein; RC54_10555                                                     N/A                 HerbaspirillumrubrisubalbicansMKTNRPALLTIGAFKRLLAGFDDNDHLDFSGLDFYRLKTRGPNLVQVEFNQQVYRNAEGDVVVENLE
2338345..2338785                   PHAGE_Entero_SfV_NC_003444: hypothetical protein; RC54_10560; phage(gi19549023)      9.53e-12            HerbaspirillumrubrisubalbicansMIDAFPGGWDAMAAALGMTRDALSNRVYERKGQAVRTQHSLEMQAFTSTTLFAEAIAAASGGVFVKLITPGSVDREDLHSKFQELWARLGELSRAYTAYTDDNHIDAREKADLQRISNEIQRTMQELMALMFQIYCSHEQEPVSGA
2338775..2341285                   PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; RC54_10565; phage(gi100019)     1.02e-53            HerbaspirillumrubrisubalbicansMELEDFDAVNAAALASLDSLLAQWFPNGVVDGAEFCIGSLSGEAGKSLRVRLKGDKAGFWSDFSMDGEAGRDPISLYAAKESISQGKACAHLARELGIAIHGADKVKRIPNGTPYLPQKSAPAQAGKGVGAPPKEKKSTSSWCPILPIPEAALPYPVAHPVRGRPQMVWEYRDQQRQLLGIVCRFVTSDGGKEVLPCVYAQDENTGNRKWHWIQWREPRPLYLPQPLREGFPVLVVEGEKCADAARAAVGDAWDVVSWPGGGKAVKKVDWSLLAGRSLLLWADADAQRYKENHAKAGEIKPEVEQPGMVAMQAVAELNFSQGCSIQFVDIPPPGEVEDGWDVADLIAAGGTKEDVCAWLAHVRPAWVAKSVEEAAAPASPAAVSDDSVPAWVDAPPTPEDVPQRPASAGSMDRAQIKAMMLYGATGVKPCRENVFLALTHDPDLHGIVAFDKFSELLMKRRDPPWESEPGEWTESDDFFLGLFLGQHYGLIVSSIGEIEKAVAQVARRHAFNPVTDYMSECEAKWDGKPRVADAFHRYWGAEDSDYTRLVSTMFLVGLAARAYVPGIKHDCAPVFEGGQGAGKSTALEVLGGAWYADTPFRMGEKDGYLSIQGILLYEVAELEQFNRSEVTAVKAFMSSKKDRFREPYGRRMRNLPRRTLFAATTNEGQYFKDPTGSRRFWPVKCGRVDTVGLAEVRDQLFGEAVAMWRRGVKWYATRDQDVRLIMPAQDDREIPDQWIGRLYDYVEGIDADGNSLSVRKLDRVTARELLTRALHIEIGKLSQSKNETMRISACMRKLGWEKERDPNGAREYFYVRPKPAVVEPKMAEEGDYAIPF
2341356..2341649                   hypothetical protein; RC54_10570                                                     N/A                 HerbaspirillumrubrisubalbicansMIFVSPPNLVQPFILKVGRLKAATIAASPTSQPFLHILTHTCAYARTRRDFFFLFLFSNPFKSRLARLGGWQSRMGIGFAPSNLAANLFLFEGRLVG
2341673..2341990                   hypothetical protein; RC54_10575                                                     N/A                 HerbaspirillumrubrisubalbicansMVASMIDDLRREHGLLPVDRQIRRSLRGEAVFYAQENGSHIGTPQKRGTVEIYWDELGISQEREIVLPPVYIEIVIESSGKELRVMNRWPGKQQPPASTGNNSNK
2342001..2342702                   PHAGE_Burkho_phiE125_NC_003309: hypothetical protein; RC54_10580; phage(gi17975228)     5.26e-44            HerbaspirillumrubrisubalbicansMLVAIEANKGAIFRDVGHALHTAFLVISNEPRQGCVTRSMLLQMMATIDLDAPGRQLTPGQAEWFSALKGTPAGSIDFSGLTDDEIRAQCAMIVAAVNHHLPRIEAMVVRARFGSTEYEDVNGARRYAFSHERAAAIRELSDWLRPALQNVPAMAVDGLLARQFANHIKTKVSVRDLAAAFGCSKSTYHRASAVVRSHVRQLEAAAHQRLARHFIEQGIIPAPAELSTAGKSC
2342699..2343319                   hypothetical protein; RC54_10585                                                     N/A                 HerbaspirillumrubrisubalbicansMTCLGQLPYIFAKLDAVAFKALEKKFSGAFSFSKPEGAGCCYYFRSHTTKGNVMAVESKFHQAASTVGARLLDFQALDELGRGLVSALSHPTGVAADLIEDACLVSIGSYPYVLETQVGEVQLHTNTFLTAGRQAAVAFKFFHEDHASCESPVYELQFDFTGRIIYATYPLGHSEVPSSEDADTLKEFAYFLKASVLEAVLEGMIR
2343458..2344045                   PHAGE_Rhodob_RcRhea_NC_028954: minor tail protein; RC54_10590; phage(gi971760207)     1.07e-31            HerbaspirillumrubrisubalbicansMIFASVKHDLLANALKFKKAGKQLPFGIAKGLTATAKDAQVALGKALPENLDRPTPFTMKAFAVEPATKQKQYAKVFIKDDQEKYLQYQVAGGTRTPARRAVVVPKGVRLNQYGNMTRGAIKKLLARKDVFSGKVKGVAGIYQRKGTHVQLIVSYADRVQYKKRFPFGDIGQAAVKTSSAKNLIAAIDAALASAR
2344161..2344676                   PHAGE_Entero_HK225_NC_019717: terminase small subunit nu1; RC54_10595; phage(gi428782377)     1.66e-09            HerbaspirillumrubrisubalbicansMDLEAKTTQAAFGALVGISQPAVSELLTRGILQPGEPAGVWLKAYCTNLREQAAGRFAAGELDLATERAALARAQREKVEMQNAVTRRELAPVALLEQVLSKVGRQIAGILEAVPVQLKRRSQLSADDLDFITRELVKARNHAAAIKLADLDDEDDSEAAESDLEDGSEGD
2344624..2346696                   PHAGE_Entero_lambda_NC_001416: DNA packaging protein; RC54_10600; phage(gi9626245)     2.24e-128           HerbaspirillumrubrisubalbicansMIARPQKATSKMDLKEIERAIAAGLESLAAVEPMRLSEWAAKNFYLSAESSYVEQAWEAYPYQVAIMDAMSNDEIEEVTFMKSARVGYTKMILAAVGYFAEHKRRNQALWQPTDDDSDEFCKTELEPMLRDVPAMMKVFPSFQAKSKANTLRQKKFLTSVLHLRGGKAAKNYRRLSVDVSILDEVDGFDQNVEKEGSPITLARKRIEGATFPKLIGGSTPKLKGLSLIEARHDQADLQFKRHIPCKHCGEMITLRWGGKDKSFGMKWINDDPSTVMHMCDLCDGQMTQADYLEAWGQGRWIAQDGSYIDDGDGSFHAPDGARIPVPKKVAFHVWTAYSPQTSWAQIVDEFLSAQRKAKTGDKSELQTFVNTTLGETWEEDVEKADIHALMQRAEPYPLRVVQMGGLVLVAGIDVQDNRFEVVVWAVGRGEEMWVVDYMVLAANPAVPADWEKLSFYMETRFQHMAGGTLGVEGYTIDTGGHFTHQAYAWARMQQAKGRRCFASKGDSRLGGPVKGRSSLQDVNIAGQVIKNGIRLWLVGTDTAKDLIFGRLNVTVSGPGCLHFSQDLPAEFYHQLTAEARVKVRTASGEQYRWVPLRKRNEVLDCTVLAMFSAHMLDLHRYTERMWERLEAAVQPSVADMFASPPPAPMASAGPSESIEINNPPARVQVPAPMPPPSSGGRRVRSRGIER
2346705..2346938                   PHAGE_Vibrio_X29_NC_024369: hypothetical protein; RC54_10605; phage(gi658311230)     4.81e-10            HerbaspirillumrubrisubalbicansMSGITLDQAQAQLAAWLAASLAVSQNQEYSIGTRKLRRADAAVIREQITYWQGIVAQLSAAASGRRRGLNISYGVPQ
2346935..2348503                   PHAGE_Bacter_Lily_NC_028841: portal protein; RC54_10610; phage(gi971748256)          8.42e-147           HerbaspirillumrubrisubalbicansMNARGKLQLAPNVIDKVVSYFDPVAGTRRMQARAHMAIAGSYVGADRSRRSFRNWFTSGKSADDDLLPDLATLRENSRDLMRNAPLAGGVINTVVTNVVGTGLAMRPSIDGDLLGMSDDQVQAWQRSVTREFQLWAENALECDSTGTQIFYDLQDLALRSALVNGDAFAVLPSNRVDNCVYATKVQLIEGDRVATPPDLLGKGNVFGGIELDGYGAMAAVHVCDQHPGSVRMGKKLSFTRIAARGSQTGRRNVVHLFKRLRPDQHRGEPYLAAVIEPLKQLDRYTEAEIMAAVVSGMFTVFIEHEADQNQPVELYGQEEKAAPELALQSGAIIDLAKGEKVNTANPGRPNAQFDPFVMAILRQIGVNLELPFEVLIKHYTASYSAARAAMLDAWKFFRVRRAWLASNFCQPIYETWLAEAVAIGRLSAPGFFADAGLRRAWCQAVWLGDGPSSLDPLKEASAIEKRVDIGVTTLEEEVAAYDGGDWETKHKQRVKEQRMRREGGLLDAAPSTPPPDLPPDPD
2348556..2349986                   PHAGE_Burkho_phiE125_NC_003309: putative capsid assembly protein/protease; RC54_10615; phage(gi17975166)     4.92e-26            HerbaspirillumrubrisubalbicansMKLIEILTSPWAIQPEKLCEIQGIYATHLRGEKIDIEAIEARLNRPLSSEQQDYEIRDNGVAVLSVDGVIAPKANLFTRVSGGASAQLLIKQVESAIADPRVSGLVLAVDSPGGSVLGTPELAATIRELSAEKPIVTVSEGTLASAAYWFGSAANAVYISGPTVNVGSIGVVMTHDYSPRATGGQATEITAGRYKRIASSVAPLTAEGKQYLQDQVDHIYSVFVDAVADHRGVAAEDVVQHMADGRVFIGQQAVDAGLVDGMATVDAIVQQMAADPNQFSARRVAQIAAKSNTAAGAGGALGGSTSPTVASAGAAKSHDPIHEENEMPDPVATVLTREALERDHAPLYAQLRTDFMAEGAASERQRILGIEAHSMPGHEALISTLKADGKTTPDQAAAQVLGAEKTKLAAMATNLKGDAPDPVKPTDDPQATSVKKPTHEAIAARAQEIVTAESNAGRRISYAQAAARANTELSAA
2350031..2350405                   PHAGE_Pseudo_B3_NC_006548: hypothetical protein; RC54_10620; phage(gi56692606)       1.36e-27            HerbaspirillumrubrisubalbicansMRVPNTVLNYTAETALAKFRIVCYGATDGSVKQAAASTDLMIGVTEGFAYAAGDRADIVRSGPAEIEFGGPVTRGQPLTSDALGRAIAAAPAAGVNARIIGYAEVSGVLGDIGSVYVGAEMIQG
2350460..2351392                   PHAGE_Pseudo_vB_PaeS_PM105_NC_028667: putative capsid protein; RC54_10625; phage(gi966198716)     5.74e-88            HerbaspirillumrubrisubalbicansMSAAAPFPINPAVIRAIVIAYSNTKLIADSVMPRVPVGAQDFKYMRQNMADQFTVPETRVGRKSAPNQVESIGDLIPASVFEYGLDEVVPVVDIKNAPEGVDPIANAAEFVMKLILLDREVRVANTVFAPANHVNKLTLSGTSQWSDYSNSDPITALLTALDVPVMRPNVMTIGRAAWTKLILHPKTIDYVNGKGGMSGGVSRQQLADALELDEIQVGEAFVNTAKKGQTASYQRAWGKHCALTYRETPTEASRSTTWGFTPQFGERISDTIYSKDFGGLEGGYKTRAGERVTEVVSAPDLSYFFQNVVA
2351631..2351927                   hypothetical protein; RC54_10630                                                     N/A                 HerbaspirillumrubrisubalbicansMFAEDLDVFFADMGKPVVWAPSGGAEQTTMGLVDAPDVFALSEHLVVANVAELTYPAGKLIGLDEDDFIQVGSVRYRVRQIPRRVDDGELMKVLISEA
2351929..2352468                   hypothetical protein; RC54_10635                                                     N/A                 HerbaspirillumrubrisubalbicansMHTRKKIRLAVQEKLAGHPLLEKLFLARTRAARSEDLPFANIITGAEVTEDLSDQYQEQRTVQVYVQLYALNGAAVVDVLDDLADVVEQRLITDPYLGGICQSLRYKGSQPDYESAADLEAALLTMTYECVYIWQPSVEGDDLQKVAVEIDMASPRNDPPLPVGPDGQVDASATINFPQ
2352479..2352667                   PHAGE_Entero_Mu_NC_000929: hypothetical protein; RC54_10640; phage(gi9633529)        4.38e-09            HerbaspirillumrubrisubalbicansMKIYPVPGRTVRDPVTYREVAGETEVNENDAFWIRRLADGDVSTEPQAAGEAGGVADGGGEQ
2352664..2354148                   PHAGE_Escher_D108_NC_013594: tail sheath protein; RC54_10645; phage(gi281199683)     2.05e-124           HerbaspirillumrubrisubalbicansMSDGSISFNQIPVDLLTPGQYVEFDNSKAISSPVNMPQRILLIGQSLATGTGAANVPLQVSGKTAGIAAFGRGSIGAAMIASLFDVTDTIETWIVPIPDNGAGTAATGTITITGSATQGGTLNLYIGEDVVQVAVATTDTVAVIAAALAAAINAKPDLVVTAASAAGVVTVTARHKGTLTNDLMMQLNYYPMSEATPAGLGVAIVQMSGGTADPSIATALANIGAVQYNTIIMPFNDAANLALMETELNNRWGPLYQNDGHCHSAVRGTVGSLNTLLSARNNSHITLWTCETGGEPGPVWEKAVLAGAVSAYYLAIDPARPLQTLVLPTRLPAPAAKRWLRSERNNILSYGGATTVVDNGGNVVIERAVTNYKTNASGTVDPSYRDIETMYTLSLMRYQVRARIAQRFPRHKLVDDTTPVAPGQAVAAPKDIKAELIALALDWVDAGIMENPDQFKSDLLVVRNKNDRNRVDVRLPPDLVNQFRVFAAQVQFRL
2354161..2354523                   PHAGE_Escher_D108_NC_013594: tail tube protein; RC54_10650; phage(gi281199684)       1.56e-08            HerbaspirillumrubrisubalbicansMPSQYFGRAFIRVNGASIASLPGTAKLNPGGVTRKPVVGDHGFLGWTETPVHSEIECDIAVNADTDIVGLNAMTNGSIVFECDSGQQFIQRGAGLESPISPQAGDGKASLKFIGAPVEQA
2354520..2354960                   hypothetical protein; RC54_10655                                                     N/A                 HerbaspirillumrubrisubalbicansMSYDQFYERQPNGPTAGPVQTSAPSPTLPPSMGTPAGAPVGDGTAPVPAGSITVVQEDRYDLAFPIKAADGSDITFLKLRRLKAKEMKGVDPKTSDGKFGGALKFIAEMNGLPADTLDELDAVDVIELVGKVAPFLVRGTGVTPSA
2355400..2356968                   PROPHAGE_Deinoc_R1: minor tail protein gp26-related protein; RC54_10660; phage(gi15807776)     1.91e-06            HerbaspirillumrubrisubalbicansMISAIDKASTTLNEIGAKLEGMIKPAGDLHSAFGKLYDATGLGKVKSAVGALSKSLVGLAVTTVGIGGVYAGTVGEILHFGVAAAEAADSVGDLAEKYQINAQRLQVFGELVKEDGGTMEDAAAAMGKLKKAMGLALAGGKEQQQAFAGVGISMAQLKGMKPEEVIERIADAFKGSNKDIAKQAVLLELMGKSGEIMMGTMNRGADGIREKYEQMTADGRIFTDDQLQQADSFDKMWKRLQGTFEGIKNFLGLKLAEKLQPMFENIQKWTVANRGLIESKFDAFLEKLPAIIEIGVQLFQGLWQVAQKVGAVFKSLNSAFGPTVSTLLMLGGLMSPVLLAFGQLGWALGVAAVKLSVFAWTMLPAAMSGLQALWGVMLANPIGLMIAGVVAFGVIIYKNWDNIVSYVSGAWDRIKGVFDVNFFSGMIQVWLEGWQALANGILGILKTILPDRLMPDAMKDFKFTFATDRASNITAAQAASAGKTEVGGTLKIQLEGAPAKVTELKRAGNAMDIDVTAGLAMM
2356981..2358180                   PHAGE_Entero_SfV_NC_003444: tail/DNA circulation protein; RC54_10665; phage(gi19549005)     9.88e-39            HerbaspirillumrubrisubalbicansMAWRDNLRPASFRGAKFNVDGSSLSAGRRIARHEYPQRDIPYAEDMGRRAREYKVDAFVLGDPAADNDYMVPRDALIAAIEKAGPGQLVHPYYGTVSVTVFGEVQITESSREGGMAKFSITFLEAGKQEEPKTSVDTEAKLAEQAGVCDASFEKDFADNFSVDGLPDFAVADAVGQVDDLMALPDVDLGALDWIRADPTSVLTSLLPENLRSSLDAPLSLAKGVLGLIGGAQRWLSFFSFSEGLASSASAVNATTASRIAVVRNQTAFSDLVRGGATSNRIYELATTQPATTAEAQVLRSEIVQRADAILFSDKVSQATSQAVVQLRTVALQHLASNTVALPSLVSVTQQQVRPAVVLAHDFYGDAWYAQGRADDLVSRNSVAHPGFVPAGRPLQFVSE
2358183..2359355                   PHAGE_Entero_SfV_NC_003444: tail protein; RC54_10670; phage(gi19549006)              5.25e-49            HerbaspirillumrubrisubalbicansMADSNLLTLRVGGQIYGGWKGINVRTSIEQLAGNFELALTERWPEQPVDWVIAPGELCEILIGDDVVITGYVDVVSVTYDQGSHEIKVTGRDKAGDLVDCSAPTTAFAGQTLEQIAEALCKPFGITIFDETVSGKRLSTKQKKAGKKGTPPKKTRVSGKVPRQACQAGETVFRTLDKLARTEGVLFVSDREGGLVITRAGLGGECETVLQHGKNILQASFENSHAALFSEITVQGQTGAPGADRFDVVHAAPKGAVKRAPSSKTGNSQIGRYRPLIIVAETQADAARCQKRAEWEASNREAKARKVTVTVQGWREEATGELWEINKMVRIQCPWMRLDDWWLISSANFKLDEAGSTTVLQLVSRNAFDQLPEIPDPAGGAAQNRFNVLGK
2359352..2359945                   PHAGE_Entero_SfV_NC_003444: tail protein; RC54_10675; phage(gi19549007)              2.90e-40            HerbaspirillumrubrisubalbicansMMDILALIREATADFKAKINLMLGRGIVSKVNDAAAIQLIRGKLMDGEDYDQMERVQQYGFTSVPKAGAEFLSTFIGGNRDHSVIVAVDDRRFRLRGLRDGEMAIYDDQGQKVHLTRNGIVIDGGGKPISIQNTPEVDMTTPLVKMSGDLKVVGSISADGDISDHGNKKMSAMRTVYNDHDHANPEGGRVGKDQVKM
2359945..2360412                   PHAGE_Entero_SfV_NC_003444: tail protein; RC54_10680; phage(gi19549008)              1.03e-17            HerbaspirillumrubrisubalbicansMDIEIFWDAANHRGDIAVLNGDLATDHDIKTAILISLFSDRRAEDDDPLPDASSSRRGWWGDALGGAGEGRRIGSRLWLLAREKQLAEVVAKAREYGQEALLWLVQDGVVDSIQVDAQIVRQGWLGLAVTVTRPKKAPAKFRFDFAWSNINQGRM
2360412..2361467                   PHAGE_Entero_SfV_NC_003444: tail protein; RC54_10685; phage(gi19549009)              8.67e-62            HerbaspirillumrubrisubalbicansMPFDRPTLRELVTRALADTNGRLTGAEARLSVATLNVLAVVQSGAVDGLHGHLDWLADQLMIDRCDEDHLARYASIWKVPRKTAAPSVGFASVSAFAALTVPAGTLIQRQDGVRYKTSAAVNLAVGAGSLPLVAVVAGTAGNTAAGVGLKLVTPIDGLDSSMTVGPAGITDGTEQETVDAWRARLLERIQQPPNGGTKSDYEAWALEVQGVTRAWVYPGEMGAGTVTVRFMRDNDAVPIPDAAAVAAVKAYLDAKRPVTAELYVAAPTGAPINFQFTQLSPNTPATREAIRAELADLLRREAIPGGTVKLSHMRAAISSAAGEDDYALATPAADVINPVGSIATLGVITWP
2361458..2362054                   PHAGE_Entero_SfV_NC_003444: tail protein; RC54_10690; phage(gi19548988)              1.62e-39            HerbaspirillumrubrisubalbicansMAMIAEHYQAQLLELLPSGPAWSRDLDTGLAKLLLAKADELARVDARADQLLEEADPRTTSELLSDWERVAGLPDECMDLAPTPDERRQRLHQKLAWQGGQSVAFFINLLEVLGYPGCTINEFRPFRANSMCSASLNQGGWRYAWRINVPGSVTIRTMNATSPCSAPIRRWGDSSLACILARYRPAHTVLYISYGAAA
2362051..2362878                   PHAGE_Entero_SfV_NC_003444: hypothetical protein; RC54_10695; phage(gi19548989)      4.03e-15            HerbaspirillumrubrisubalbicansMKRISTATKVVDKFGAGKPGFTNGNAVAGVPATDLEGDWFDHVQEEISRVIEAAGGAVDGSSYSMLLTSIQSLIGSLSIRQYSITALPTADVGPIIVKEVCEVWRWSASAYFTGYRSPLCGRPMDGHTTTPLASEISAVGGTLSKTAYAGLWGYAQENGLVLTQANWTTNIGGHYFVDVDAATFRVPDLRNVFRRYSGTDADTLAARALGSYKADTLKSHVHGLGGNGAWVDASGTYAVNAGGATVNLSRSTLTGAAGTAETAPRHTAFNPVIHI
2362935..2363321                   PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; RC54_10700; phage(gi100032)       4.05e-13            HerbaspirillumrubrisubalbicansMSSITVYQADALGFFLYPTQAFELPLQPGDFNIPYGALIEEPPAAPQGYVARVVGSGWQLVEDHRQDRLFYVLQPAAGDELAMFAEYLIGSQVVLDGQELRYDGGGPVPAWLISQLPEKGRLLVPSLE
2363363..2363800                   restriction endonuclease; RC54_10705                                                 N/A                 HerbaspirillumrubrisubalbicansMAAFSFLSGTYMPEPTTGAVIGAGSGAFAVGTITITGSFLGLQYEMLLAGLAGGLAMLSSLPPVSRPRAVMILITSALMGGYVGPMLHAWAIQSDAFAWSGKYSEATRLCSGFLIGASSQTVIPLALGWMRTKFGGGNINQEPSK
2363797..2364096                   hypothetical protein; RC54_10710                                                     N/A                 HerbaspirillumrubrisubalbicansMIKILLATDYLLVVNFLASLALFLHCVFALNRMNHRSNHLVRAWYVISAVGAFGVITGPLYGYISPQPAEVISNVGVAGLLAGGWIYRNRRATDIGEPR
2364093..2364668                   PHAGE_Salmon_PVP_SE1_NC_016071: lysozyme; RC54_10715; phage(gi363539668)             3.38e-34            HerbaspirillumrubrisubalbicansMILTLAQLQRIMPASTRASLFLKPLNAAMQEFGIDTRLRMAAFLSQIGHESGQFRFMEELASGAAYDNRADLGNTNPEAIRIATAHGSTPGRFWKGHGPIQITGYHNHLAAMLALHVDCVEQPRLLCEPVHGCRAAGWFWSVNGLAKWADAGDIDGVSDLVNRGKKTVAIGDANGFAERKAIWERALEVIS
2364665..2365165                   hypothetical protein; RC54_10720                                                     N/A                 HerbaspirillumrubrisubalbicansMNRIQNFGAVVLALCLGLIGGYLWGGHRQAQIDEGREATVSELHAIALASATERYREAERGGQQAFANMTAALQKEKDNAKKRMDVLRDELRTGAVRLSVAVDAASAATAAQAAAAGDREARADLLPAAAGRILDFALEGDDIVRDLNACIDKYHRAEQVIEHAGM
complement(2365192..2365917)       hypothetical protein; RC54_10725                                                     N/A                 HerbaspirillumrubrisubalbicansMDVFTCVRPLIAINNDKQFPYSVLGSCFIADFYERYFVITAKHTYFKSYTVTQLAAQYDPKQARMLPFNRRFELLPHGGTDEELSDITILEIDADQLDIGSLGATYPAKITIDDSFTLLNPNFNYAFRGYPHQLREYSEKQIHSVGVTGDAFLLDGNLSDSGLHGLTVNNAEKFPSFDGFSGSPVFQLSHLDDIVTLPCFSGMLTRGNQRSGIVHFMTCKQIVKALQAIVKEHEIPPVKKI
2366511..2367203                   PHAGE_Lactoc_TP901_1_NC_002747: ORF54; RC54_10730; phage(gi13786585)                 2.36e-09            HerbaspirillumrubrisubalbicansMKKKTIKTLQTFIRATLSENKQQIFRGQENAEWSITAGIGRSSINFASAKTLKSKALAERKAIILFEERSHLIRKHHPANELEMMALAQHYGLPTRLLDWTLSPLVALFFAVESLAPTPGVVYMQARHDEVLSHKSVPKDPFEIDNDMLYAPPWIDARIQAQQGVFILMKNPYEPYQEESLTAFVIPADAKKTIKRELWRMGMHAGIVFPGLDGLAKYITALRFSGSILD
complement(2367594..2368826)       PROPHAGE_Escher_CFT073: putative prophage integrase; RC54_10735; phage(gi26250313)     2.04e-97            HerbaspirillumrubrisubalbicansMALTDLACRTAKPQDKQYKLSDGKGLVLICHPNGSKYWSGAYRFAGKQKSLSLGVYPEVSLADARDQWTDARRRLKDGIDPGLAKQQDKLIKIAAAARTFKAVAMEWHTHMAGSGEWGAGSVAEYLHRLETDVFPHIGNDPIDNMPPKRILHVIREMEKRGAIELAGRARGMLARIFNYAIACGDTKVNPADALKDLVKKPVKGHFASIEVEEFPEFIREVVKMQLHGRWTPAVRCGFWLMMRTFVRTQELIAMPWDEWKRDKALWVVPGERMKKRRDHIVPLSWQATALLEEMEALTGRNHYVFPNARDPKDHLSEGAILGVLKRMGYHGRMTGHGFRSLATGVLTQQLKFEYRVVDLQLSHAKDNKNDAAYDRAKWIDERIKIMQAWSDYIDQLVADASRPRLITAVA
2368991..2369005                   attR                                                                                 N/A                 TGGCGGAGACGGAGG

#### region 3 ####
2735004..2736071                   PHAGE_Ralsto_RS603_NC_025454: hypothetical protein; RC54_12120; phage(gi725950589)     3.38e-09            HerbaspirillumrubrisubalbicansMGINVYTGLMGSGKSYEVVAEVIVPAIAKGRRVVTNVDGIDGDKIRAYIEKNYKPVPEQLGEVVHVTNGDVALANFFPYYDDKKGAHTDTIVQPGDLVCIDEAWRFWPATGANLLQEHKSFFLEHRHFTNEQTGVACDLVLMIQDMSTLNRFVKNVVAFHIRTHKKISLGMPTHYSVSIFEGNKQSKAARISVELRKYRKDIFPLYSSFKGGADGKIVNVDKRQNMLARKKIWMTGGVLLVALVTGLYSINRFFHPKPVAESTQAGRQDTSTNNGKQSTVQPTKPAFSDTWRIVGTARFGTTSYVVIADEAGRLRYESPSMFVQMGPQTIGEIDGAKVTRYSGAVIHSVHIEGKK
2736077..2737375                   PHAGE_Vibrio_VFJ_NC_021562: phage morphogenesis protein; RC54_12125; phage(gi514361041)     2.58e-13            HerbaspirillumrubrisubalbicansMITALLMAYSTLAVAAPSGPLLPLTPLSMPLPPGAPPQSDSAMEFSRVRVAEAVEAMYTQILKTPYLIQPEVVADERLVSFRFGTGVSARSEVSRFMGLLGLSVRTVNGVDIVGIVKEAEPDKEPFVYRPKYRDVTYLVELLRGLFPKGEFTSTRSIHGAPQAITADAATGQSKAPAPAGSAASLLDTDPDALVFNGTETDIKKLSALLAQLDTRQGEVMVRGQVFEVASNGAEGSAFSLALHLLGGTVSAGVSQPSTLDGFVRLKNSSIDAVFAALSSDSRFKTISAPSLRVRSGAAGRFAVGQDVPVLGAISYPGNGSAPVQSVEYRSSGVIFDLKPIVRESVVDLTVGQQLSNFIVTQTGVNNSPTLTKREVSTSLSVADGDVVIIGGLAENRESSGRIGFSFLPDWMRSNTGQNSKTEILLVLQVSRL
complement(2737377..2737676)       PHAGE_Ralsto_NP_2014_NC_023586: hypothetical protein; RC54_12130; phage(gi589287133)     1.00e-17            HerbaspirillumrubrisubalbicansMEQPELPLLHFPYQPYFAHFKRTRKALAPANFVPPWKQLRLTLYVRNLMRKGAAFIWTRPDGRQFFCKTMRQLVARIMDYDGYILHTIFQYKNGRLIRT
2738313..2739215                   PHAGE_Ralsto_RS603_NC_025454: hypothetical protein; RC54_12135; phage(gi725950591)     3.11e-37            HerbaspirillumrubrisubalbicansMSASYTPDFDLSNVSFDACNEFEQKAPGWSDEGIRNTWNDRYVARKVTYPDGQMEVTVCREKHFKGPAPIIGKRTKRGESENRERNEAVAARNAKKNVRERCKSIGADRMITLTYRDNMIDREKALKDWDKFRRRVGRCVDFHYVAVIEEQQRGALHFHVAVRGRQCYQLLRSIWSSIVGVDEQGRSMSNIDVRNPSKFGFGKDGIHKLASYIAKYCGKQMECRDFDQKRYFASRGIPKPDVQSWALASTNSLGAVQTAFVIAGAGLLDGAQFWYNKALDVIWIATAPYKNIGTLETLPF
complement(2740233..2740466)       hypothetical protein; RC54_12140                                                     N/A                 HerbaspirillumrubrisubalbicansMPLCGKQRRTLKQMFLDLKELGYEGSYDRVAAFGRRWKVGQMERVKSVSKSTLDQLEPNCISDHVLTLFQESHYLLI
2740480..2740669                   hypothetical protein; RC54_12145                                                     N/A                 HerbaspirillumrubrisubalbicansKLDLSWLLASPNSLRSSADDFCNCRHGPLGRCAVLVQQSARRYLDCNITLSKHGNFGGCSVLA
2740703..2741266                   PHAGE_Burkho_phi6442_NC_009235: gp28; RC54_12150; phage(gi134288620)                 4.08e-32            HerbaspirillumrubrisubalbicansMSSNIIVLGDKTSHGGTVISASVNSATHGKGWARVGDMVSCPRCRGVFPISQGDNSLLDDGKAVAYDGCKVACGAVLISTQCVTSTDPSSVAAPSASLASGDFGPIGSNLAASYHDEPLDDIGQRFRGRFQVVDAISGQPVTDQSVRVRSTSGQYLTGSTDADGFTQWVERTAREALAFDLTEKSVT
2741263..2741979                   PHAGE_Burkho_phiE125_NC_003309: hypothetical protein; RC54_12155; phage(gi17975191)     9.76e-60            HerbaspirillumrubrisubalbicansMTEPTPPSTPLATGGMSRDGTTTVVKINQPALDFKDKKVLCSAICKCNDAPGIGKDGRSLKQSCVSSRLRELDKLLEHRSPYKPEVNYDMTKMPPEPIMDSSIETKVHDWLPGWISKYWEVDHGSPYLKGAGMIRRPDVITVLDPRKPPTQENIKQIVEIKFPPDKITTPQQDAYIEIAGDEKKLVTVGPQDCDCSQPEPQESKIPVEELGVAATALRILYMLVTKRPPPGGVPTPAF
2741987..2743063                   PHAGE_Burkho_KL3_NC_015266: gp49; RC54_12160; phage(gi327198094)                     1.16e-76            HerbaspirillumrubrisubalbicansMSDLPFDPIQLMRDHPEKMRIPGGLLTKQGAQDYVGSVPAITGTLFFYDAHLPNVREAICLCFDEYAAIAKEHLTWLWRAEPPEGPDKFPYRDAPSMRGMMGRMGENDLVSFVYTSGKQSFDAGDWEFQVFGRRGWEAKMKARGTSALRLSVPLLYVEENPSAFQKLFVNFARRLNAIHGYAGYGLVLSAPREQDNQPFEAYLSEKLKGFDAGEPVGGSRHARNGIKTVSWLTAVNHEMVKQIGGITTIRSELPMNWFALYDYGNGLVVQAGPKPDAAPTDQPMPASLVLPNMLFKEVRSPQISLHSTSVHGEPRLIGWAAEQWLNRFDIDEAQLMQYKAKLLDEPKLTKSTTLPDRL
complement(2743166..2743450)       PHAGE_Sodali_phiSG1_NC_007902: hypothetical protein; RC54_12165; phage(gi89886021)     2.35e-08            HerbaspirillumrubrisubalbicansMATTLFDTHEYVKRLEAAGIPRDQAEAHATGLAEAMNSELVTKSDLNAFRAEVSNNFASVATSFAEVRGQFELLKWMLGFMLAGTVGILFKIFH
complement(2743553..2743825)       PHAGE_Burkho_phiE12_2_NC_009236: gp25, conserved hypothetical protein; RC54_12170; phage(gi134288728)     3.87e-05            HerbaspirillumrubrisubalbicansMRYPNIRYGHQGELEFWMQGHSVKEIAKRLKRSERSVHDWLHGKRKIPWWVPEILRLQHYEYQDRLRQMGFKAPKTKLAIATADILEFPKP
2744079..2744312                   PHAGE_Burkho_phiE12_2_NC_009236: gp25, conserved hypothetical protein; RC54_12175; phage(gi134288728)     2.17e-09            HerbaspirillumrubrisubalbicansMCRDLFGEVPVTEEDVFRWVQAISPRWLSPERSYRNYVRTWGVVDKIKAAKLRGDFESIIDRPQPAYHARFALNAII
2744412..2744687                   hypothetical protein; RC54_12180                                                     N/A                 HerbaspirillumrubrisubalbicansMAGGQYRTTGFGEDENAAQGAALKAAQAACDKQSRRLEVVSTQTKYKGVVSEDTNKNLATAGKLASYVGAWVPTLSDDNDYEVTLQFTCAA
complement(2745136..2745423)       hypothetical protein; RC54_12185                                                     N/A                 HerbaspirillumrubrisubalbicansMDRGDFIMLGVVAVAVVGAAYYAKKKIGAMIPPVVQDGVQAAGLIGSNFANILTDPLDAFGVRPPVNNVWVITTPWENPNDPVSNNSSGMNFNYF
complement(2745423..2745770)       hypothetical protein; RC54_12190                                                     N/A                 HerbaspirillumrubrisubalbicansMSGGGGGNNDILLLGIVIIGAMMFSRTARAQQQTAPRTVYVPASASGASGTGAAQIAGGIAGGLAAWLGNLGAAAGSINTNPGNGYDTWNGTATVQNSFGLYGPIGGTAEDPWYG
complement(2745779..2746369)       PHAGE_Salmon_SEN34_NC_028699: tail tape measure protein; RC54_12195; phage(gi966201433)     5.03e-15            HerbaspirillumrubrisubalbicansMRDDLLIVAGLLVAAYVVMKADSQGSPISEFTLTTDLTAGDEQSNFIEDAADNMQSMITGWPAGSGPYQQLITDSANANGLPVSILAYLLWKESRYRQEIIDGTVRSRTGAMGIAQFMPATAREELGSEGAALDPAQAIPGAARYLAKLVRMAGSLAGGLAAYNWGIGNVQRKGLAAAPAETVDYYTTIMKKAGLA

#### region 4 ####
4263045..4263057                   attL                                                                                 N/A                 TCCAGTCCATCAT
4263213..4264295                   PHAGE_Burkho_DC1_NC_018452: integrase; RC54_18880; phage(gi401723020)                2.45e-65            HerbaspirillumrubrisubalbicansMATFQKIGKRWRARIRRKGFPAQSEMFDTKAQAQEWASRQEADMRALKFQDVRIIADKTLASAIERYVEEQTQVRPLGKNKKAVLSNLKLALGKHTMPALTGDVLIDYVKDRKAAGAGGVTIAVDLTYLTSVIKAAKNIWRWPVNLDAIDQARAYMAHIGLSTRSKERMRRPTKVELSNISTWFLVKVRQKVPMADLIAFAVDTAMRLSEIINLKWVDLNEQDKTIIIRNRKHPRAKIGNDQEVPLLGDAFDIVKRQPRVDKEERIFPVTEGTVSSLFPRACKALGIKDLRFHDLRHEGVSRLFERGYTIEQVALVSGHRDWKMLARYTQIRAKDLHLPHNRKRLSDRNSVPSSPTAKSG
complement(4264229..4265638)       hypothetical protein; RC54_18885                                                     N/A                 HerbaspirillumrubrisubalbicansMRDIFAAFYRPSDAELKDAWASALFVLDTNILLNLYRFPLSARNELLELFEKLQSQLWIPFHVGMEFQRGRLGVIAEQQRRFSEVQSALENGLQTMTKKLAELQLANRHSTINVDPILKEIAESIRGFGEKLQQLKESDDVSLDRDSIRDRLDMVFAGRVGNAPTKDSLAKIQRDGDVRFKCEMPPGFKDAQKDKGGSAQFMFQGLLYEAKYGDLILWKQLIEYAKEKAIKKIIFLTDDDKEDWWQSVRESGPKKIGPRPELREELRREAGVDFFHMYNSATFLTHAKENLKVEVQQQSIDDVVDVLRWNNANPIHNQPPLSDLERAGTYVKEWLHSRNIPMLQTGDGVERVSIDSTLVELNIQIFVGIEDFDGIIFELLDAYTKRSRPTPLLIIIVGFGPQCRTAAARWFERYERAVGLPQDISIGYGELILGPLKLGTEVQAQKRFYPLFAVGELGTLFLSDRRFRL
complement(4265929..4266816)       hypothetical protein; RC54_18890                                                     N/A                 HerbaspirillumrubrisubalbicansMAKLQLEDKSVKEFVFEFPLYAPLSGNALQIGGFIQEMRSGETMRFDSYCPNCCQDTTWVRAEDPFLDHVNAELTGMQLAFGRADDLSRVWIDNSRHYAVTYQCSRVLEHHFHAYFAVSSNPTSGNYEIVKCGQIPSLLSMKKPLKAHEALLDKEARSEFREALLLSAHGNNIAAFLHLRRILEKLVDIAAVEKGREDPSFDAVAYSRGSFGEKVGLVKDRVPEFLNNTPQLYSILSEGLHQWSNERCGAVIDLMELAIDLILKKVAEEKLRKSEEERTRIALQKLASQMPARPT
complement(4266996..4267790)       PHAGE_Burkho_phiE125_NC_003309: DNA adenine methylase; RC54_18895; phage(gi17975188)     6.55e-143           HerbaspirillumrubrisubalbicansMATPNPIIPWLGGKRRLADTIIPRFPAHTCYVEVFAGGAALYFLRSPAKVEVINDVNGDVVNLYRVVQNHLEEFVRQFKWSLSSREIFKWLQDTPPETLTDIQRAARFFYLQQHCFGGKVEGQTWGTATTAPPVNLLRIEETLSAAHLRLAAAQIERLDWAKCVDRYDRPHTFFYMDPPYLETEGYGVPFPVGEYEKMACMMRSLQGKAIVSINDHPMIREIFASFQHDELSIDYTVGGGGRATRRGELLIYSWDREGEPVGLF
complement(4267923..4268438)       PHAGE_Burkho_Bcep22_NC_005262: Rz-like phage lysis protein; RC54_18900; phage(gi38640385)     3.07e-06            HerbaspirillumrubrisubalbicansMNRLQTVAAVLGAVVLALCLGLIGGYLWGGHRQAQIDEGRAAEVSEQHALALASATERYREAERSGQQAVAAITAAAQQEKENAKKQMDVLRGELRAGAVRLSVTVDAASAAAAAQAAAAGDREARADLLPAAAGRILDFALEGDDIVRDLNACVDKYHRAEQVINEAGQQ
complement(4268435..4269010)       PHAGE_Pseudo_phiPSA1_NC_024365: glycoside hydrolase family 19 protein; RC54_18905; phage(gi658307722)     9.90e-34            HerbaspirillumrubrisubalbicansMILTLAQLQRIMPASTRASFFLEPLNAAMQEFGIDTRLRMAAFLSQVGHESGQFHFMEELASGAAYDNRADLGNTNPEAIRIAAAHGSTPGRFWKGHGPIQITGYHNHLAAMLALHVDCVEQPRLLCEPVHGCRAAGWFWSVNGLAKWADAGDIDGVSDLVNRGKKTVAIGDANGFAERKAIYERALEVIP
complement(4269007..4269306)       hypothetical protein; RC54_18910                                                     N/A                 HerbaspirillumrubrisubalbicansMIKILLATDYLLVVNFLASLALFLHCVFALNRMNHRSNHLVRAWYVISAVGAFGVITGPLYGYISPQPAEVISNVGVAGLLAGGWIYRNRRSTDIGEPR
complement(4269303..4269740)       restriction endonuclease; RC54_18915                                                 N/A                 HerbaspirillumrubrisubalbicansMAAFSFLSGTYMPEPTTGAVIGAGSGAFAVGTITITGSFLGLQYEMLLAGLAGGLAMLSSLPPVSRPRAVMILITSALMGGYVGPMLHAWAIQSDAFAWSGKYSEATRLCSGFLIGASSQTIIPLALGWMRTKFGGGNINQEPSK
complement(4269782..4270168)       PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; RC54_18920; phage(gi100032)       3.32e-11            HerbaspirillumrubrisubalbicansMSSITVYQADPLGFFLYATHAFELPLQPGDFNIPYGALIEEPPAAPQGYVARVVGSGWQLVEDHRQDRLFYVLQPAAGDELAIFAEYPIGSQVVLDGQELRYDGGGPVPAWLISQLPEKGRLLVPSLE
complement(4270225..4271049)       PHAGE_Ralsto_RSL2_NC_028950: hypothetical protein; RC54_18925; phage(gi971759677)     3.80e-37            HerbaspirillumrubrisubalbicansMKRISTATKVADKFGPNKPGFTNGNAVAGLAATDLEADWFDHVQEEISRVIEAGGGAVDGSSYTQLLTAIQSLIGSLSIRQYSITALPAADVGPIIVKEVCEVWRWSTSAYFTGYRSPLCGRPMDGHTTAPLASEISAVGGTLSKTAYAGLWGYAQENGLVLTQANWTTNIGGHYFVDVDAATFRVPDLRNVFRRYSGTDADSLAARVLGSYKTDTFKLHGHGTGYNVISLNGLYGPNSGGTFASSATPGTSTFGAGSAETAPKHTVFNPVIHI
complement(4271046..4271642)       PHAGE_Entero_SfV_NC_003444: tail protein; RC54_18930; phage(gi19548988)              8.61e-39            HerbaspirillumrubrisubalbicansMAMTAEHYQAQLLELLPSGPVWPRDLDTGLAKLLLAKADELARVDARADQLLEEADPRTTSELLSDWERVAGLPDECMDLAPTPDERRQRLHQKLAWQGGQSVAFFINLLEVLGYPGCTIAEFRPFRANSMCSASLNQGGWRYAWRINVPGSVTIRTMNATSPCSAPIRRWGDSSLACILARYRPAHTVLYISYGAAA
complement(4271633..4272688)       PHAGE_Entero_SfV_NC_003444: tail protein; RC54_18935; phage(gi19549009)              6.25e-64            HerbaspirillumrubrisubalbicansMPFDRPTLRELVTRAFADINGRLTGAEARLSVATLNVLAVVQSGAVDGLHGHLDWLADQLMIDRCDEDHLARYASIWKVPRKDAAPSAGFASVNAFAALTVPAGTLIQRQDGVQYKTSAATNLAVGAGSLPLVAVVAGTAGNTAAGVGLKLVTPIDGLDSSMTVGPAGITDGTEQETVDAWRARLLERIQQPPNGGTKSDYEAWALEVQGVTRAWVYPGEMGAGTVTVRFMRDNDVVPIPDAAAVAAVKAYLDAKRPVTAELYVAAPTGAPINFQFTQLSPNTPATREAIRAELADLLRREAIPGGTVKLSHMRAAISSAAGEDDYALATPAADVINPVGSIATLGVITWP
complement(4272688..4273155)       PHAGE_Entero_SfV_NC_003444: tail protein; RC54_18940; phage(gi19549008)              2.11e-17            HerbaspirillumrubrisubalbicansMDIEIFWDAANHRGDIAVLNGDLATDHDIKTAILISLFSDRRAEDDDPLPDASASKRGWWGDALGGAGEGRRIGSRLWLLAREKQLAEVVAKAREYGQEALLWLVQDGVVDSVQVDAQIVRQGWLGLAVTVTRPKKAPAKYRFDFAWSNINQGRM
complement(4273155..4273748)       PHAGE_Entero_SfV_NC_003444: tail protein; RC54_18945; phage(gi19549007)              1.45e-39            HerbaspirillumrubrisubalbicansMMDILALIREATADFKAKINLMLGRGIVSKANDGGAIQLIRGKLMDGEDYDQMERVQQYGLTSVPKPGAEFLSTFIGGNRDHSVIVAVDDRRYRLRGLKDGEVAIYDDQGQKVYLTRAGIVIDGGGKPITIQNTPEVDMNTPIVKMAGDLKVTGSISADGDISDHGNKKMSDMRAIYNGHDHANPEGGRVGKDQVKM
complement(4273745..4274917)       PHAGE_Entero_SfV_NC_003444: tail protein; RC54_18950; phage(gi19549006)              5.36e-49            HerbaspirillumrubrisubalbicansMADSNLLTLRVGGQIYGGWKGINVRTSIEQLAGNFELALTERWPEQPVDWVIAPGEFCEILIGDDVVITGYVDVVSVTYDQGSHEIKVTGRDKAGDLVDCSAPTTAFAGQTLEQIAEALCKPFGITIFDETVSGKRLSTKQKKAGKKGTPPKKTRVSGKVPRQACQAGETVFRTLDKLARTEGVLFVSDREGGLVITRAGLGGECETVLQHGKNILQASFENSHAALFSEITVQGQTGAPAADRFDVVHASPKGAVKRAPSSKTGHSQIGRYRPLIIVAETQADAARCQKRAEWEASNREAKARKVTVTVQGWREEATGELWEINKMVRIQCPWMRLDDWWLISSASFKLDEAGSTTVLQLVSRNAFDQLPEIPDPAGGAAQNRFNVLGK
complement(4274920..4276119)       PHAGE_Entero_SfV_NC_003444: tail/DNA circulation protein; RC54_18955; phage(gi19549005)     4.98e-39            HerbaspirillumrubrisubalbicansMAWRDNLRQASFRGAKFNVDGSSLSAGRRIARHEYPQRDIPYAEDMGRRAREYKVDAFVLGDPAADNDYMVPRDALIAAIEKAGPGQLVHPYYGTVSVTVFGEVQITESSREGGMAKFSITFLEAGKQEEPKTSEDTEAKLSQQVGVCDASFEKDFADNFSVDGMPDFAVDDALGQVDNLMALPDVDLGALDWIRADPTSVLTSLLPENLRSSLDAPLSLAKGVLGLIGGAQRWLSFFSFSEGLASSASAVNATTASRIAVVRNQTAFSDLVRGSATSNRIYELATTQPATTAEAQVLRSEIVQRADTILFSDKVSQATSQAVVQLRTVALQHLASNTVALPSLVSVTQQQVRPAVVLAHDFYGNAWYAQGRADDLVSRNSVAHPGFVPAGRPLQFVSE
complement(4276132..4277700)       PROPHAGE_Deinoc_R1: minor tail protein gp26-related protein; RC54_18960; phage(gi15807776)     1.86e-06            HerbaspirillumrubrisubalbicansMISAIDKASTTLNEIGAKLEGMIKPAGDLHSAFGKLYDATGLGKVKSAVGALSKSLVGLAVTTVGIGGVYAGTVGEILHFGVAAAEAADSVGDLAEKYQINAQRLQVFGELVKEDGGTMEDAAAAMGKLKKAMGLALAGGKEQQQAFAGVGISMAQLKGMKPEEVIERMADAFKGSNKDIAKQAVLLELMGKSGEIMMGTMNRGADGIREKYEQMTADGRIFTDDQLQQADSFDKMWKRLQGTFEGIKNFLGLKLAEKLQPMFENIQKWTVANRGLIESKFDAFLEKLPAIIEIGVQLFQGLWQVAQKVGAVFKSLNSAFGPTVSTLLMLGGLMSPVLLAFGQLGWALGVAAVKLSVFAWTMLPAAMSGLQALWGVMLANPIGLMIAGVVAFGVIIYKNWDNIVSYVSGAWDRIKGVFDVNFFSGMIQVWLEGWQALANGILGILKTILPDRLMPDAMKDFKFTFATDRASNITAAQAASAGKTEVGGTLKIQLEGAPAKVTELKRAGNAMDIDVTAGLAMM
complement(4277800..4277985)       hypothetical protein; RC54_18965                                                     N/A                 HerbaspirillumrubrisubalbicansMEKPAKPKKEVPGRMTGLVGLLAFGAGAIGLIPAVLGLILVASIAWLGLRFVIGLFGILFS
complement(4278140..4278580)       hypothetical protein; RC54_18970                                                     N/A                 HerbaspirillumrubrisubalbicansMSYDQFYERQPNGPTAGPVQTSAPSPTLPPSMGTPASAPVGDGTAPVPAGSITVVQEDRYDLAFPIKAADGSDITFLKLRRLKAKEMKGVDPKTSDGKFGGALKFIAEMNGLPADTLDELDAVDVIELVGKVAPFLVRGTGVTPSA
complement(4278577..4278939)       PHAGE_Escher_D108_NC_013594: tail tube protein; RC54_18975; phage(gi281199684)       1.83e-08            HerbaspirillumrubrisubalbicansMPAKYFGRAFIRVNGASIASLPGTAKLNPGGVGRKPVVGDHGYLGWTETPAHAEIECDIAVNADTDIVGLNAMTNGSIVFECDSGQQFIVRGAALESPISPQAGDGKASLKFIGAPAEQA
complement(4278952..4280436)       PHAGE_Escher_D108_NC_013594: tail sheath protein; RC54_18980; phage(gi281199683)     3.09e-124           HerbaspirillumrubrisubalbicansMSDGSISFNQIPVDLLTPGQYVEFDNSKAISSPVNMPQRILLIGQSLATGNGAANVPLQVSGKTAGIAAFGRGSIGAAMIASLFDVTDTIETWIVPIPDNGAGTAATGTITITGSATQGGTLNLYIGEDVVQVAVATTDTVAVIAAALAAAINAKPDLVVTAASAAGVVTVTARHKGTLTNDLMMQLNYYPMSEATPAGLGVAIVQMSGGTADPSIATALANIGAVQYNTIIMPFNDAANLALMETELNNRWGPLYQNDGHCHSAVRGTVGSLNTLLSARNNSHITLWTCETGGEPGPVWEKAVLAGAVSAYYLAIDPARPLQTLVLPTRLPAPAAKRWLRSERNNILSYGGATTVVDNGGNVVIERAVTNYKTNASGTVDPSYRDIETMYTLSLMRYQVRARIAQRFPRHKLVDDTTPVAPGQAVAAPKDIKAELIALALDWVDAGIMENPDQFKSDLLVVRNKNDRNRVDVRLPPDLVNQFRVFAAQVQFRL
complement(4280433..4280621)       PHAGE_Entero_Mu_NC_000929: hypothetical protein; RC54_18985; phage(gi9633529)        4.85e-09            HerbaspirillumrubrisubalbicansMKIYPVPGRTVRDPVTHREVAGETEVNENDAFWIRRLADGDVSTEPQAEGEAGGVADGGGEQ
complement(4280632..4281171)       hypothetical protein; RC54_18990                                                     N/A                 HerbaspirillumrubrisubalbicansMHTRKKIRLAVQEKLAGHPLLEKLFLARTRAARSEDLPFANIITGAEVTEDLSDQYQEQRTVQVYVQLYALNGAAVVDELDDLADVVEQRLITDPYLGGICQSLRYKGSQPDYESAADLEAALLTMTYECVYIWQPSVEGDDLQKVAVEIDMASPRNDPPLPVGPDGQVDASATINFPQ
complement(4281173..4281469)       hypothetical protein; RC54_18995                                                     N/A                 HerbaspirillumrubrisubalbicansMFAEDLDVFFADMGKPVVWAPSGGAEQTTMGLVDAPDVFALSEHLVVANVAELTYPAGKLVGLDEDDFIQVGSVRYRVRQIPRRVDDGELMKVLISEA
complement(4281706..4282638)       PHAGE_Pseudo_vB_PaeS_PM105_NC_028667: putative capsid protein; RC54_19000; phage(gi966198716)     2.32e-88            HerbaspirillumrubrisubalbicansMSAAAPFPINPALIRAIVIAYSNTKLIADSVMPRVPVGAQDFKYMRQNMADQFTVPETRVGRKSAPNQVESIGDLIPASVFEYGLDEVVPVVDIKNAPDGVDPIANAAEFVMKLILLDREVRVANTVFAPANHVNKLTLSGTSQWSDYSNSDPITALLTALDVPVMRPNVMTIGRAAWTKLILHPKTIDYVNGKGGMSGGVSRQQLADALELDEIQVGEAFVNTAKKGQTASYQRAWGKHCALTYRETPTEASRSTTWGFTPQFGERISDTIYSKDFGGLEGGYKTRAGERVTEVVSAPDLSYFFQNVVA
complement(4282693..4283067)       PHAGE_Pseudo_B3_NC_006548: hypothetical protein; RC54_19005; phage(gi56692606)       7.66e-28            HerbaspirillumrubrisubalbicansMRVPNTVLNYTAETALAKFRIVCYGATDGSVKQAAASTDLMIGVTEGFAYAAGDRADIVRSGPAEIEFGGPVTRGQPLTSDALGRAVAAAPAAGVNARIIGYAEVSGVLGDIGSVYVGAEMIQG
complement(4283112..4284542)       PHAGE_Burkho_phiE125_NC_003309: putative capsid assembly protein/protease; RC54_19010; phage(gi17975166)     4.25e-26            HerbaspirillumrubrisubalbicansMKLIEILTSPWAIQPEKLCEIQGIYATHLRGEKIDIEAIEARLNRPLSSEQQDYEIRDNGVAVLSVDGVIAPKANLFTRVSGGASAQLLIKQVESAIADPRVSGLVLAVDSPGGSVLGTPELAATIRELSAEKPIVTVSEGTLASAAYWFGSAANAVYISGPTVNVGSIGVVMTHDYSPRATGGQATEITAGRYKRIASSVAPLTAEGKQYLQDQVDHIYSVFVDAVADHRGVAAEDVVQHMADGRVFIGQQAVDAGLVDGMATVDAIVQQMAADPNQFSARRVAQIAAKSNTAAGAGGALGGSTSPTVASAGAAKSHDPIHEENEMPDPVATVLTREALERDHAPLYAQLRTDFMAEGAASERQRILGIEAHSMPGHEALISTLKADGKTTPDQAAAQVLGAEKTKLAAMATNLKGDAPAPVKPTDDPQATSAKKPTHEAIAARAQEIVTAESSAGRRISYAQAAARANNELSAA
complement(4284595..4286166)       PHAGE_Bacter_Lily_NC_028841: portal protein; RC54_19015; phage(gi971748256)          9.10e-148           HerbaspirillumrubrisubalbicansMSARGKLDLAPNVIDKVVSYFDPVAGTRRMQARAHMAIAGSYVGADRSRRSFRNWFTSGKSADEDLLPDLATLRENSRDLIRNAPLAGGAINTVVTNVVGTGLAMRPAIDGEALGMSEEQVQAWQRSVTREYLLWAENPLECDSTATQNFYDLQDLAFRSALINGDAFGVLPSNQVAHCLYATKVQVIEGDRVMTPPDLVTKGNVFGGIELDDFGAMTAVHVCDQHPGSVRIGKKPTFTRIAARGSQTGRRNVVHLFKRLRPDQHRGEPYLAAVIEPLKQLDRYTEAEIMAAVISGMFTVFIEHEADQDQPAPIYDDNKEKAAPELALSSGAIIDLAKGEKVNTANPGRPNAQFDPFVMAILRQIGVNLELPFEVLIKHYTASYSAARAAMLDAWKFFRVRRAWLASNFCQPIYETWLAEAVAIGRLSAPGFFADAGLRRAWCQAVWLGDGPSSLDPLKEASAIEKRVDIGVTTLEEEVAAYDGGDWETKHKQRVKEQRMRREGGLLDAAPSTPPPDLPPDPD
complement(4286163..4286396)       PHAGE_Bacter_Lily_NC_028841: hypothetical protein; RC54_19020; phage(gi971748255)     3.04e-10            HerbaspirillumrubrisubalbicansMSGITLDQAQAQLAAWLAASLAVSQNQEYTIGTRKLRRADAAVIKEQITYWQGMVAQLSAVASGRRRSLNISYGVPR
complement(4286405..4287580)       PHAGE_Synech_S_CBS3_NC_015465: large terminase subunit; RC54_19025; phage(gi331028008)     3.66e-41            HerbaspirillumrubrisubalbicansMNTVFGIDINDLFRNEHEALKFAFNFQSQQYPLSPMSKLGSLEALGQGKGLVSTDGAAQAGMIRKKLDRLGEAHRHCLVARFSPKYDVCPCCQGEPYPLRVVQMGGLVLVAGIDVQDNRFEVVVWAVGRGEEMWVVDYMVLAANPAVPADWEKLSFYMETRFQHMAGGTLGVEGYTIDTGGHFTHQAYAWARMQQAKGRRCFASKGDSRLGGPVKGRSSLQDVNYAGKVIKSGIKLWLVGTDTAKDLIFGRLNVTQSGPGCLHFSQDLPAEFYHQLTAEARVKVRTVSGEQYRWAKMRLRNEVLDCTVLALFSSHMLDLHRYTERMWERLEAAVQPAVADMFASPPPAPMTSAGPAESIEINNPPARVQVPAPMPPPSSGGRRVRSRGIER
complement(4287589..4287906)       hypothetical protein; RC54_19030                                                     N/A                 HerbaspirillumrubrisubalbicansMVASMIDDLRREHGLLPVDRQIRRSLRGEPVFYAQENGSHIGTPLKRGTVEIYWDERGISQEREIVLPPVYIEIVIESGSKDLRVMNRWLGKQLPPASPGNNSDK
complement(4287930..4288223)       hypothetical protein; RC54_19035                                                     N/A                 HerbaspirillumrubrisubalbicansMILVSPPNLVQPFILKVGRLKAATIAASPTSQPFLHIRTHTCAYARTRRDFLFLFLFSNPFKSRLARLGGWQSRMGIGFAPSNLAANLFLFEGRLVG
complement(4288294..4289667)       PHAGE_Verruc_P8625_NC_029047: DNA primase/helicase; RC54_19040; phage(gi981221160)     3.32e-23            HerbaspirillumrubrisubalbicansMELEDFDAVNAAALASLDSLLAQWFPNGVVDGAEFCIGSLSGEAGKSLRVRLKGEKAGFWSDFSMDGEAGRDPISLYAAKESISQGKACAHLARELGIAIHGADKVKRIPNGTPHLPQKSAPAQAGKGVGAPPKEKKSTSSWCPILPIPEAALPYPVAHPVRGRPQMVWEYRDQQRQLLGIVCRFVTSNGGKEVLPCVYAQDENTGNRKWHWIQWREPRPLYLPQPLRDGFPVLVVEGEKCADAARAAVGDAWDVVSWPGGGKAVKKVDWSLLRNLPRRTLFAATTNEGQYFKDPTGSRRFWPVKCGRVDTVGLAEVRDQLFGEAVAMWRKGVKWYATRDQDVRLIMPAQDDREIPDQWIGRLYDYVEGIDADGNSVSVRKLDRVTARELLTRALHIEIGKLSQSKNETMRISACMRKLGWEKERDPNGAREYFYVRPKPAVVEPKMAEEGDYAIPF
complement(4289657..4290097)       PHAGE_Entero_SfV_NC_003444: hypothetical protein; RC54_19045; phage(gi19549023)      1.48e-11            HerbaspirillumrubrisubalbicansMIDAFPGGWDAMAAALGMTRDALSNRVYERKGQAVRTQHSLEMQAFTSTTLFAEAIAVASGGVFVKLITPGSVDREDLHSKFQELWARLGELSRAYTAYTDDNHIDAREKADLQRISNEIQRTMQELMALMFQIYCSHEQEPVSGA
4290208..4290465                   hypothetical protein; RC54_19050                                                     N/A                 HerbaspirillumrubrisubalbicansMEKQQLDKLVGLIGGCETAIVTLADCLHKAGVLDKEALSAHYDATAHALPQEIPHREVIQMVLGHIARGLRSAKDQEDLIGTLFH
complement(4290981..4291307)       hypothetical protein; RC54_19055                                                     N/A                 HerbaspirillumrubrisubalbicansMPSPSEKILKLSPGLRSLASKRNSESADARDSPTNATDAEVEQIASLFCRVVRTARVTCTATSDKLALVTLAAKWMRTKYLSAFMPVPSCFLNDGAKHMTARQSRKPQ
complement(4291310..4291585)       PHAGE_Haemop_Aaphi23_NC_004827: putative Cro protein; RC54_19060; phage(gi31544011)     1.68e-08            HerbaspirillumrubrisubalbicansMKPLDKAIDIARGVSRLADQIGVGQSVVSNWRRRGTLIEPLLCARIEKVTRGEVKRQDLRPKDWHEIWPELVASGPITRRDEPSDAGQGAR
4291658..4292053                   PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; RC54_19065; phage(gi401817574)     8.12e-09            HerbaspirillumrubrisubalbicansMNKETLGARLRATRKAKQLTQAQLAQRAGLTQGTIGNIESGIRGYGESLLDIAKALDVDPAYLRMETDVKHQDSASNDSDVPGDLSARQVVLLQLFDGLTSKQQDEIIRTLEATKQANFELIEELAQRRHK
4295880..4295892                   attR                                                                                 N/A                 TCCAGTCCATCAT
