gi|00000000|ref|CP025045.1|  Clostridioides difficile strain W0023a chromosome. 4110080, gc%: 28.69%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
194170..194568                     PHAGE_Helico_phiHP33_NC_016568: transposase; CWR56_01065; phage(gi371671361)         3.46e-53            ClostridioidesdifficileMYKSNKNIVYDCKYHIVFCPKYRKPVLVGEVEKMLKEILPYKADELGAEIIEMETDKEHVHLLISCDPQYGIHKVVKGLKGFSSRVLRENFPHLKSSMPSMWTNSYFVGTVGSVSLEVVKQYIENQQVRTKK
194565..195728                     PHAGE_Clostr_phiCD211_NC_029048: transposase; CWR56_01070; phage(gi981220996)        0.0                 ClostridioidesdifficileMIKTHRVKLNLTRTQFELVREKQMESANCWNYIVNLSKEYYFEHKQWIKKNDIQKLIKGKYNLHSQTIQAISDKFDANRKTISELRKKGNTKAKYPYKTKKFYIIPFKASAINRNAKGNLKLSMSKGRYLELDFNVENIKTAEIVWRNGYYLYYTFDNELNGVVAKGTNTVGVDLGEIHSIASVTNEGVGLILSNREGRSIKQFRNKMYAYISKRLSKCKKGSRQSKKLWRLKNKIRSKTDNQLMNLYHQTTRKFIDFCVEQKVCEIVLGDIKGVEKDTKKKKRLNRVNRQKISQMEYGRIKDYIKYKAKEQGIEVKLVKENYTSQTCPKCSKKHKPTGRTYSCTCGYETHRDIVGAWNILNKKHKYGLVDFRINHKQPINLKVSTV
complement(196112..196624)         nitroreductase family protein; CWR56_01075                                           N/A                 ClostridioidesdifficileMLEVIKNRHSIRTYIDKNIEEDKITEILKSAMQAPSSKNAQPWEFIIVDDKELLKQLSKSQHRAKHIEFAPLCIVVLGNRDKFLKPGKWIQDLGACTQNLLLEVTNQGLAACWAGVFPKNKVVNKVRQTLDLPVKLVPYALISIGYSEEKNEFIDRFDENKIHRNVYKNR
197074..197550                     5-(carboxyamino)imidazole ribonucleotide mutase; CWR56_01080                         N/A                 ClostridioidesdifficileMKVAVVMGSKSDYPKLEEGIKLLEKYGIEVVARALSAHRTPEQLSIFLKEIEDDTDVIIAAAGKAAHLPGVIASQTLIPVIGLPIKSSTMDGLDSLLSIVQMPKGIPVATVTIDLGLNAALLALQIMTLKYPKLKEDLKSYREEMAQKVLEDDKNLRG
197556..198254                     PHAGE_Prochl_Syn1_NC_015288: phosphoribosylaminoimidazole-succinocarboxamide synthase; CWR56_01085; phage(gi326784002)     4.47e-61            ClostridioidesdifficileMLLYEGKAKQVYSTDNENEYVVYYKDDATAFNGEKKAEISSKGILNNKISTIIFEMLKENNINTHFIKSLSDREMLVKKVEILPLEVIVRNIAAGSICKRVGLEEGVVFDEPIFEISYKNDAYGDPMLNDDYAVAMKLATREELKFLREETLKINELLKAFFLKLNLKLVDFKIEFGKDSEGNIILADEVSPDTCRLWDVNTNEKLDKDRFRKDLGDLVEGYTEVLSRMNNK
198266..199633                     PHAGE_Pseudo_UFV_P2_NC_018850: glutamine amidotransferase; CWR56_01090; phage(gi410491852)     6.95e-06            ClostridioidesdifficileMCGVLGIYSNKDVTKELYYSLYSMQHRGQESCGLALLDDGEIKYKKDMGLVGDVFKENELSKLKGNIGIGHVRYSTAGGSHVSNCQPLVGSCRKRQLAIAHNGNLVNANYLKDMLEEDGYMFQTNSDTEVILYILARYYKGDIVESLKVTMDYIKGAYALVIMSQEELVAVRDPHGFRPLVLGKKGDEYIFASENCAIDILGGEVIRDVEPGEIIVVKDGELKSYFYSENYKPVKKSCIFEHIYFARNDATIDNVNAYEFRIKCGERLAQNETVKADMVVPVPDSGWPGAIGYANASGLKISEGLVKNRYVGRTFIKPTQEEREIAVKIKLNPLSTIIKGKSIILVDDSIVRGTTSKQLVKSLREAGAKEIHLRITSPPVAYSCYYGIDTPNRSKLIASSNNVEEMREYIGCDSLKFLDIEGMLDATEHKSTFCKACFDGEYPVKKIDKEELLSC
199627..200703                     PHAGE_Synech_S_CAM8_NC_021530: phosphoribosylaminoimidazole synthetase; CWR56_01095; phage(gi514050953)     3.17e-78            ClostridioidesdifficileMLTYKESGVDIDEGNRAVDLIKGKIKGTYDGNVVGDLGNFSGLYSLKDFVGMKEPVLLASTDGVGTKLKIAQMMDKHDTVGIDLVAMCVNDLICQGAKPLFFLDYIALGKLVPEHIEKIVGGIADGCKMSGCALIGGETAEMPGMYGEDDYDLAGFSVGIADKEKIVSGNNVKSGDVLVGISSSGVHSNGFSFIRKIFLETYNYKMEQYVEELGMTVGEALLTPTKIYVKLALDVLAKHDIKAIAHITGGGLIENITRVIPKGLGLDINKKSWEKPPIFKMIEGFNAVDERELHKSFNMGIGLVLIVDKENADDVVNFINNRENDNAAYVDKKYSELLEDKAYIIGEVVDSHEGVELC
200697..201290                     PHAGE_Synech_S_SKS1_NC_020851: cyanobacterial phosphoribosylglycinamide formyltransferase; CWR56_01100; phage(gi472340960)     9.42e-34            ClostridioidesdifficileMLNIGVLISGGGTNLQAVIDGTESGEIKGQVKVVISSKQGAYGLERAKNHNIKAICETDEDKIIEILKENKIDLVVLAGYLKIISPKLVNEFRNKMINIHPSLIPSFCGAGFYGEKVHQGVIDYGAKVTGATVHFVDEGADTGPIIMQDVVKVNQDDDAKTLAKRVLEVEHRILKESISLFCENKLKLQGRRVFINE
201283..202815                     PHAGE_Prochl_P_SSM2_NC_006883: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; CWR56_01105; phage(gi61806062)     8.23e-74            ClostridioidesdifficileMSKRALISVTDKTGVVEFAKELNKLDYEIISTGNTFKTLKENGVNVMQVEDVTNFPEILDGRVKTLNPYIHGGILYKRDKESHVETVNEHKIHSIDLVAVNLYDFEGTLKAGKSHDEIIENIDIGGPSMIRSAAKNYKDVIVVVDIKDYDSIIEKLKTDTMTLEDRKKLSYKAFSTTGRYDALISSYFAGEVGDTYPDILNLTFQKEQTLRYGENPHQNGFLYSQSNAKNPILNYEQLGGKELSFNNLNDLHGCLEVMREFKDSEEVVSVAIKHANSCGVGLGKDAFEAYTKCYEADKVSIFGGIVGITSTIDKATAEKLNEIFLEIVVAYDFEPEALEILKQKKNLRILKLAKIENSLQPYEMKYLDGKLLIQDRNNILAEKSENVTKEKPTDAQLKDMEFGMRVVKNMKSNAIAIVKNGQTLALGCGQTSRIWALKNALENNKDKDFTGAVLASDAFFPFDDCVTLAHEYGISAVVQPGGSIKDKDSIEACDKYDMVMVFTGIRHFKH
202826..204076                     phosphoribosylamine--glycine ligase; CWR56_01110                                     N/A                 ClostridioidesdifficileMKILVVGGGGREHAICWKLSKEKNVEKIYCAPGNAGIANVAECVNIGDTNIEELLKFAKENEIGLTIVGPEVPLVMGIVDEFEKEGLRVFGPNKKCAQLEGSKAFSKEFMIKHNIPTAKYKEYTNLEEAISEIDSFGYPVVIKADGLAAGKGVVIPENREDAIATLKEMMSDKKFGAAGDKIVIEEFLKGIETSILAFVDNDTIVPMASAKDHKKVNNYEQGPNTGGMGTFSPSEIYTEELANKVKETVLEKTLEGFKKDGLNFKGILFVGLMITEDGEKVLEYNVRFGDPETQSVLFRLETDLHEIMEAILDNKLKDIEINYSDDEAVCVMLTSGGYPDSYEKGKIITGLENLDDDIVVFHSGTKMFDGNLVTNGGRVIGITAKSTTVKDAAEKVYENIKKINFEGMHYRTDIGR
204101..207907                     PHAGE_Microb_Min1_NC_009603: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; CWR56_01115; phage(gi149882852)     9.53e-35            ClostridioidesdifficileMLNTENKDSMVRRVLVEKREGFDLEAKALKKDLVESLHIDNIENLRILNRYDVEGISEEVYENAAKTIFSEPNLDVVYYEEIPKLNDERVFAIEFLPGQYDQRGDWAAQCVQIVNQGIRPAINTAKVYILSGKITDEEFSKIKDYCINPVDSREASLEKPETLKMETEIPTTVEVLDGFIDLDENGLRTFVSEKGLAMTLGDLQHVQKYFKDTEKRNPTITEIKVLDTYWSDHCRHTTFMTEIENVKIEDGKFNDIVKEAYQMYLNSRDNVYVNRHKDICLMDIATVAVKELKKNGKLNDLDESEEINACSINVDVEVDGKMEKYLVMFKNETHNHPTEIEPFGGAATCLGGAIRDPLSGRSYVYQAMRVTGSADPRTTLEDTLPGKLMQRKITTEAAHGYSSYGNQIGLTTGQVAEVYDENFVAKRMEIGAVIAAAPKENVVRERPEAGDVIVLLGGKTGRDGCGGATGSSKEHSEESILTCSAEVQKGDAPNERKIQRFFRNKEVAQMIKRCNDFGAGGVCVAIGEIADSLDINLDLVPKKYDGLDGTELAISESQERMAVAIKKENKDKFIQLAVEENLEATHVATVTDTGYLRMFWNGKAIVDINREFLDTNGVKQTTDVHVTKVDEENTFFSSNEIVKDVKCASMKDKFTKVLSDLNVCSQKGLVEMFDNTIGGNTVLMPFGGKYQATPTQGMVAKIPVLGGETNTSTIMTYGYNPKVGKWSPFHGALYAVVESVCKLVAIGGNYSTTRLTFQEYFEKLGNNPEKWGKPFSALLGAFYAQSKFEIPAIGGKDSMSGTFKDIEVPPTLVSFAVDTVDAKKVVSPEFKKADSKVVMLCVNKAENDVVDFEELKRNLDKVRELIHGNKVLSTYALGFAGVGEAISKMAFGNKIGFKFSEEAEKAFTDDKLFEASYGNIVLELANDDLSMLEGYNYVVLGSTVKEASIFIKGEELALDELYKAHCSTLEPIFPTKTEEVKSKIETISYISQGEAKKSSLSIATPRVFIPAFPGTNCEYDSARAFERAGANASIRVFKNLTYKDIEDSIDTIVNEIKSSQIIMLPGGFSAGDEPDGSGKFIATVFRNPRVQEAINEFLTQKDGLMLGICNGFQVLIKLGLVPYGEIRVPSESAPTLTYNNIGRHQAKIARTRISSNKSPWLAQTNVGDIHNIAISHGEGKFVASEDVMRELIANGQVATQYVDFNNEATYDIEFNPNGSFYAVEGITSVDGRVFGKMGHSERIGEEVYKNIIGEKDQKIFESGVKYFR
208113..208985                     PHAGE_Entero_phi92_NC_023693: Phi92_gp064; CWR56_01120; phage(gi726646997)           4.01e-48            ClostridioidesdifficileMKILITGSNGQLGKELVNQLEAINQSINQPKYVILATTRSDLDISNQTNVDNFILHNKPDVVVNCAAYTKVDACEDNIEIAYKINALGVRNLAIASEKVNAKLIHISTDYVFNGFSKYPYREDNKTEPNSVYGKSKLMGEKFVEQFSHKYFILRTAWLYGNGNNFVKTMIKLSLENTEVNVVNDQFGTPTSTVDLAKIIIKIMETEHYGVYHATCEGECSWYDFAKKIFKLKNIDIKVNPIKSNEFKCKAPRPLYSVLDNFMLKLIGLNSFRKWEESIEEYLERYDINEK
209094..209963                     PHAGE_Entero_phi92_NC_023693: Phi92_gp066; CWR56_01125; phage(gi726646999)           7.51e-123           ClostridioidesdifficileMKGIILAGGSGTRLYPITKCISKQTLPIYDKPMIYYPMSVLMLAGIQDILIISTPRDIKAFEELFGDGSSLGLNITYAIQEKANGIAEAFIIGEEFIGNDRVSLVLGDNIFYGYGFSERLENAVKRKGATIFGYHVSNPNSFGVVEFDKDFNVLSIEEKPTVPKSNYAIPGLYFYDNDVVEIAKLVEPSDRGELEITSINSEYLKRGKLKVELLGRGMAWLDTGTHKGLLDASNYVEVVQTRQGLYIACLEEIAYTKGYISREQLMKLAKPLIKTEYGQYLLKLASEDM
210012..210569                     PHAGE_Entero_phi92_NC_023693: Phi92_gp065; CWR56_01130; phage(gi726646998)           7.23e-60            ClostridioidesdifficileMGKINVIKTKIEGLYIVEPNVFYDERGYFMESYNKKDFIEQGLDMCFIQDNESSSRKGVLRGMHFQVKYPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGVILSDKNKKQFYIPEGFAHGFLVLSEKAVFSYKCTNYYYPEFENGFIWNDKQISIEWPLKGIEEIFLSEKDKKQKSFKDICTRR
210607..211590                     PHAGE_Entero_phi92_NC_023693: Phi92_gp067; CWR56_01135; phage(gi726647000)           1.47e-95            ClostridioidesdifficileMKKILITGGAGFIGSNFIHYMLNKYVDYFIVNLDLLTYAGNLETLIEIQDNSNYKFVKGDISNREQVYKLFEEERFDIVVNFAAESHVDRSVENPDLFIKTNIIGTQVLLDASIKYGVKRYHQISTDEVYGDLPIDRKDLFFTEQSSINPSSPYSASKASADLLVSSYYRTYGLLTTISRCSNNYGPYHFPEKLIPLMILNALENKQLPVYGNGENVRDWLHVYDHCTAIDLIIHKGNIGEIYNIGGHNERSNLEVVKMILNLLGKSEELISYVNDRPGHDLRYAIDATKIENELGWKAKYDFDLGIKETVKWYIENESWWKAVLSV
211620..212288                     PHAGE_Bacill_Page_NC_022764: lytic tail protein; CWR56_01140; phage(gi571798147)     2.16e-27            ClostridioidesdifficileMNEISSLINILALTQLSGSNTTNQCNCTYNNSSGFDMIMMTLLKALSQNNQHTSNSYNLLSNSENLFNELDNVVNNTTSRFIDVDTKDKNVKLRIENAVDQASKKYNVDSNLIKAIIKVESDFNPNTVSSAGAKGLMQLMPENCRDLGVTDPFNIEQNIDAGTRHIKEYIDMFGGSIEMGLMAYNGGPGRMKSRGVESISDLYKMPKETQNYIPKVMKYYRG

#### region 2 ####
1202234..1202246                   attL                                                                                 N/A                 ATTAAAATTTAAA
1202510..1203424                   PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; CWR56_05585; phage(gi157265299)     5.62e-13            ClostridioidesdifficileMDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHPRNDVDVELQKAEAK
1203466..1204638                   phosphopentomutase; CWR56_05590                                                      N/A                 ClostridioidesdifficileMSRVIWIVIDSVGIGALPDAEKFGDSKDVSTLGNIFKEYPDIQIPNMRNLGIGNIDGIDFFESIKEPIGCFGKCKEMSQGKDTTTGHWEMTGIIVDKPFKTFEHGFSKEIIEEFEKKTGRKVVGNKPASGTVIIDEYGEHQIKTGDVIVYTSADSVFQIAANEEVIPLEELYNMCKIAREIMMGDNAVARVIARPFIGKKKGEFVRTSNRRDYSLDPFEPTVLDNIKESGLDVLAVGKIEDIFNGKGITDAIHTKSNMDGVDETLNYMKQDNKGLIYSNLVDFDSKYGHRRDPEGYKKALEEFDSRLPEIMANMREDDILIINADHGNDPTYKGTDHTREYIPVMIYGNKIKKGFNLGVKDTFADIGATVADILNVKLPKHGSSFKEDLF
1204685..1205497                   purine-nucleoside phosphorylase; CWR56_05595                                         N/A                 ClostridioidesdifficileMFEKIAQSSKFINSKSDIKPKIGLILGSGLGDLANDIEDPVAIKYSEIPNFPVSTVAGHAGQLVIGKLEGKEVIAMQGRFHYYEGYSQKEATFPVRVMKELGVEILIVTNAAGGVNKEFKAGDLMLIRDHINFSGSNPLVGKNDDRFGARFPDMSDAYSSKYVDVVKNCAKECNIDVKEGVYMFFSGPNYETPAEVRMAQILGADAVGMSTVPEVIVASHSNIGVIGISCITNMAAGILNQPLSHEEVIETTQKVKSEFMNLVKTTVKNL
1205686..1207026                   PHAGE_Geobac_E3_NC_029073: putative pyrimidine nucleoside phosphorylase; CWR56_05600; phage(gi985758391)     4.92e-167           ClostridioidesdifficileMEISIMRMYDIIKKKRDNLELSKKEINYFIENYSKGDIPDYQASALLMSIYLNKMNKQETVHLTEAMMNSGDMINLSEIDGIKVDKHSTGGVGDKTTIALIPLVASCGAPVAKMSGRGLGHTGGTIDKLESIPGFSTEMEISKFIDSVNKSKIAVCGQSAKVAIADKKIYALRDVTATVDNISLISSSVMSKKLASGADAIVLDVKTGDGAFMKTLEESFELAKSMVDIGTGMNRDTIGIVTDMDEPLGFAVGNSLEVIEAIETLKGNGPKDLVELCEVLGAYMLVLSKVAHDFEDGVEKIRESIKSGTAIQKLKEFIENQGGNKDVVDDYSLFKKSKYKYPVKSTKSGYISKIKAEDVGVSAMILGAGRETKDDILDLSAGIILEKKVGDYVNEGEVLAYMYYNDEQKLSLAKGRFIDSYSIVDSKIEKNKLIYGIVTKEEIKKF
1207239..1208318                   endolytic transglycosylase MltG; CWR56_05605                                         N/A                 ClostridioidesdifficileMNFKENRLKIAVLIIVILIILAGIFVFIQIGPYDKNNKKDVIIDVPSGASVGKISDILYENKLIKNELLFKLLVKVSNKAPSIKSGTYLLNQSYSNNDIISLLVSGKIYQDGIKVTIPEGATSKEIIAMLVSKNLGDKATFENLIKKPQEFYDKFPYLKEDGITSLEGFLYPETYYFNSKKQSEEDILSEMLKVFDSKYTDKFKKKQKELNMTLQEVMEMASIIEKEAVLDKDRPIIASVFYNRLKVGMPLQSDATIQYIFEERKKIVTYDDLKIDSPYNSYKNKGLPPTPISNPGIKSIEAALYPEKTDYLYFVAKIDGGNNYSTNYQDHLKYVKEYKEARDKQSKDTKATNKENTKK
1208490..1209164                   PHAGE_Mycoba_Send513_NC_042033: hypothetical protein; CWR56_05610; phage(gi100064)     5.93e-15            ClostridioidesdifficileMSNIVNDLVEDYIRVTLKEKEGFLKDLEIYAEENSVPIIHKEVSDLLKVLLKVQKPKRILEVGCAIGYSSIFFATIIGKDADIITVERNEKMIEKAKENIKLAGFDNNITILEGDAEEKLSQVQGEFDLIFIDAAKGQYKLFFDLVIDKLKDGGLLVSDNILYKGMVAHDDFVVRRKKTIVKRMRNYLDYICNCDYLSTSLVPIGDGVALSYKESKRGDVDGIK
1209151..1210398                   peptidase U32; CWR56_05615                                                           N/A                 ClostridioidesdifficileMELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHERGKKVFVTVNIIPHNEDFLQLEDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPLDMDIEAFMHGAMCISYSGRCLISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIPELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRDPENWKFNPMWMEELKKGSHRHFTSGFYLNKPTTEDQNYQSASYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMGPYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVGKDYMLRKVIEEKVEE
1210470..1212134                   penicillin-binding protein 2; CWR56_05620                                            N/A                 ClostridioidesdifficileMSKKKTPFLKKVGKRSWCIFTIILIIYSVLIYRLVDIQVLKGDKYKQSVESQSVEKVELNSGRGIIYDRNNKKLTDTSKSQVLIVEKEKLNNNYKILELIKKATKMNDLDIYKAVQEQLTRPIIQIQTKNIDKSMKKELEKNGIMVEEKTMRYAKDGLLSHTIGYIKEDDKSGQSGIEKSMDSVLRNSNEKYISAFKAGDAGNEKSLNILKGSVKTVDNKDKDRHLKTTIDYNIQKKLEQILNKEENPTAAIISEASTGEILAMCSRPNFDQNDISKSLKGKNGEFENRVIKATYPPGSVFKMVVLFSALENGVIDENYTYNCTGKTKVGNTNEILRCNKRDGHGFQNLRQAFSNSCNPAFLDIAMKLGKEKILKSAEKLHLFEKVDIGLDEEKIREAPKNISIRNLAIGQENIEFTPLQINQMTQIIANNGTFKPLYLYKSLVDNNMNTIKTYKSSKKEELISPYVCTQVKEYMKSVSRIGTAKDLKDIEGGCGVKTGTAQSSLNKKAIDHGWITGFYPEERPKYVITVLVEGTQKGNKSATPIFKEICESIK
complement(1212231..1212503)       PHAGE_Bacill_phiNIT1_NC_021856: putative sigma factor; CWR56_05625; phage(gi526118575)     7.43e-06            ClostridioidesdifficileISLLDILGTEANYVLDEVELKVQVGKLYEQLNKILTPREREIVQLRYGLTPYGYKTQREIAQKLDISRSYVSRIEKKALKKLEKELVQES
complement(1212538..1214055)       PHAGE_Thermo_THSA_485A_NC_018264: Recombinase; CWR56_05630; phage(gi397912662)       1.98e-179           ClostridioidesdifficileMSVAIYLRKSRADEEAEKQGEFETLSRHKSTLLKLAKEQNLDVIEIKEELVSGESIIHRPKMLELLKEVEENKYDAVLVMDLDRLGRGDMKDQGIILETFKESKTKIITPRKTYDLTDEFDEEYSEFEAFMARKELKLISRRMQRGRIKSVEEGNFIGTSAPFGYDAVTTGRKERILVPNKDADVVRTIFDLYINEDMGCSKISKYLNNLGIKTATGANWYNSAITNIIKNKVYCGYIQWQKKDYKKSKNPNKIKTVKLRPKDEWIEAKGKHEPLISEITWKKAQNILKKNGHVSYGNQIKNPLAGIVICKNCGRPLVYRPYADHDYIICYHPGCNKSSRFEFIEAAILKSLEDTVKKYQLKASDIDLDKNNKDSNIEFQKRVLKGLETELKELGKQKNKLYDLLERGIYDEDTFIERSNNISSRTEEIKDSIKTVKNRLSTVKKDNSKIIEDIKTVLSLYHDSDSLGKNKLLKSVIDKAVYYKSKEQKLDSFELMVHLKLHEDQ
complement(1214180..1215001)       hypothetical protein; CWR56_05635                                                    N/A                 ClostridioidesdifficileMIISKKITAILVSFLIMISMVGCAPKESATEVAKKYLDSIKIKDYEVAYNLLSKDSKESVSLEKFEEYQDTLFKLQTLKDYKLGEENKVEKYKYSNKEYTNLVKIKETDTIKYITENKEDTANFDRYFIIEDNEYKLLWHKDFKRALSSNYVKIARSETEKDEDKDYNKAAIDIKKAIEIDDKNPLAYYTQSYIYIELQRYDEALKSIDKYLEYLDKNNEAYKIDASDAYNLRGVIFMSKSEFNKARESYNKALELNPDNEYAKTNLNDIKGL
1215192..1216619                   PHAGE_Bacill_0305phi8_36_NC_009760: low copy number virion structural protein; CWR56_05640; phage(gi156564190)     4.71e-05            ClostridioidesdifficileMKIKKLLTIGLSLSIFIASCPISANALDKIESIKGADKYETAGIIADKQNYTTAILINADSTMSDGLSASGLAGAINAPILLTKKNNIPNATLKRLEKAKKVYIIGGENSIDKYTETVLKGKGIEIKRLQGSDRIKTSYNVAKEINSINKVNKVILTNAFKGEPDAMSVAPVAVRDKAAIVLTDGKSVPFNTTGVESYVIGGTSSMNDKIVKDTNSTRLGGTDRYDTNKKIINKFYSGVKEFYIASGTDLVYALVGSTAAKNNAIVLVDNDSNKSVLKSTTKLTAIGNLSDSILQQCLNVTKNIGDSNTGREYTVEDAANAVKKLLGVKKFYYKPNYSEDEDLIFLLDKNFDFSGKEYYVFAYIKQGAEGDVRYCVAKNDMSKVYTYDVNGNMKVCNPDDYKNKGSITEEQAKQIALKECAKRHKVSINNLVVDMIDFRDDIYSGNVYAVKINSKNSNGTFGWFFIDIETGKVYN
1216769..1216921                   PHAGE_Clostr_phiCD38_2_NC_015568: hypothetical protein; CWR56_05645; phage(gi333798140)     5.08e-11            ClostridioidesdifficileMDNFLFNVLASLTASVVVYLISKLFKKAKSHSRTKSDLRVEFKFIFKSKK
complement(1218220..1218444)       PHAGE_Lactob_Lj965_NC_005355: putative repressor; CWR56_05650; phage(gi41179224)     1.96e-07            ClostridioidesdifficileMDVNQRIKYIRENMNSSQKELLEKTNINTSVMNRIESGERPTRDDGLIIFAKIFGLYTDYILGLSDTEKLNIGN
1219155..1219310                   PHAGE_Clostr_CDMH1_NC_024144: putative anti-repressor protein; CWR56_05655; phage(gi640884902)     2.41e-05            ClostridioidesdifficileMALDVKIEVKIIKDVVILNITHWKKETSLLTVKIARSQGDLSYVKYFANES
1219335..1219436                   PHAGE_Paenib_Vegas_NC_028767: DNA-binding anti-repressor; CWR56_05660; phage(gi971741623)     1.55e-07            ClostridioidesdifficileMSLETRLTINKRRMAEEGVCKFKRDKLNKLDTM
1225166..1225178                   attR                                                                                 N/A                 ATTAAAATTTAAA

#### region 3 ####
1350592..1350792                   PHAGE_Lactoc_bIL312_NC_002671: Csp; CWR56_06300; phage(gi13095918)                   7.93e-21            ClostridioidesdifficileMKTGVVKWFNNEKGFGFISVEGEGDVFVHFSAITGDGYKTLEEGQSVEFEVVDGAKGPQAANVVRL
1351213..1351641                   CBS domain-containing protein; CWR56_06305                                           N/A                 ClostridioidesdifficileMNILFFLTPKSEVAYIYEDYTIRQALEKMEYHKYSAIPIISKDGKYVGTITEGDFLWTLKNDLNLDLKGLEDVPVTDINRKMDNSPVSINADIEDLVIKSLNQNFIPVIDDQDTFIGIIKRRDVIGYCYEIIRGYKNLANDN
complement(1351784..1352539)       peptidylprolyl isomerase; CWR56_06310                                                N/A                 ClostridioidesdifficileMEKKVLATVGEKEITNIDIENALKSLDPYQAMQFKTEEGKKHLLNDLVNQELFFLDAKEEKLDEEEIFKLEMKKIEENVLKQFAINKVLSSVNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEISFEDAALKHSSCPSKDMGGDLGTFGRGQMVPEFEEAVFSMAKGEVSEPVKTQFGYHIIKLEDLQESTESTFDEVKAEVEKSLLYQKQNEVYGNKINALNAKYGNLVKYND
complement(1352660..1353076)       hypothetical protein; CWR56_06315                                                    N/A                 ClostridioidesdifficileMYKEKLFDNYFKFLALLFWPIMWYKWIVISNGTLENMLFTIYAIVAIVFIILYSVFMIKYKDITQIDFFYRISTLLAFIFTLFSFLIYPKSLFFLYLKIIFTGIYLYYSIVKTLKFKDDEGVVGIMSSLLLIVITLFY
complement(1353240..1353746)       PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; CWR56_06320; phage(gi209901280)     2.01e-09            ClostridioidesdifficileMNNLDKLFELASQEEIIIHYTTYIAGDLEGLYINKHGIKIISLLSNLKQNSKKLTSILAEELGHHFTSLGYYVSSYNDYYTKIIIDKCENKALKWACEFLITEEDIINIINSGITCVYEMADILNVDITFFQKRLEFLSLKKQSLQLGNNKYLILTNLPYFYIFDPIS
complement(1353828..1354148)       PHAGE_Clostr_CDMH1_NC_024144: putative repressor protein; CWR56_06325; phage(gi640884900)     3.70e-17            ClostridioidesdifficileMFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYLLGRTLVKENIDTVAAHRKNPHEELPEEAQEQLNDYIEFLLNKYKKK
1354317..1354514                   PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; CWR56_06330; phage(gi100059)     1.48e-09            ClostridioidesdifficileMFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEVFFIQL
1354619..1355059                   PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; CWR56_06335; phage(gi971763947)     3.54e-33            ClostridioidesdifficileMENKKDILFKETDKRLHNYKYLDIKIKNINLDIKRCENEYSGCGAMVYTEKTSNTYNISSSVENEVLKREERLRKLKMEKEDIEIEKEKIENALTCLNDIEMEFFNLFYNSKTKNNMTYISMKLHLDRTSCYNLKKKMIFKLSEIL
1355308..1355751                   PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; CWR56_06340; phage(gi971763879)     7.51e-22            ClostridioidesdifficileMLKYKEILETIIEILKKNFTESIFIDDESVQGSEGSCFFVSILSVICTPVMLNTNNKDIVISIKYLPKPQSKSIRMYEISDELNKLFNRNIKVTDRKLNITKLEQSIKKEESIYVLNFTFTLNYLDSVYEEDVVYENMKEINLNLGE
1355756..1356820                   PHAGE_Clostr_phiCDHM19_NC_028996: putative tail sheath protein; CWR56_06345; phage(gi971763880)     8.79e-112           ClostridioidesdifficileMAIGLPSINISFKELATTVKERSARGIIAMVLKDAKALGLNEIHEKEDIPVDLSAENKEYINLALMGNVNTPNKLLVYVIEGEADIQTALDFLETKEFNYLCMPKAVEADKTAIKNWIIKLRDIDKVKVKAVLGKVVGNHEGIINFTTEDVLVGEKKYSVDEFTSRVAGLIAGTPLSQSVTYTKLSDVVDIPKMTKVDAESRVNKGELILIKEAGAIRIARGVNSLTELTAEKGEMFQKIKIVDTLDIIHSDIRKVIIDDYIGKVTNSYDNKCLLIVAIKSYLEELEKSALIESDSTVEIDFEAQKSYLKSKGVDLSYMTLQEIKEANTGSKVFLKAKIKVLDAMEDIDLSIEI
1356834..1357262                   PHAGE_Clostr_phiCDHM19_NC_028996: putative tail core protein; CWR56_06350; phage(gi971763881)     7.43e-40            ClostridioidesdifficileMANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKGSITLYHVSSRMHKLIGEKIKRGSEPRFVAISKLNDPDSYGAERIAVKNIAFDDLTLADWEVGVKGEIEAPFTFTEYDFLDII
1357376..1357822                   PHAGE_Clostr_phiCDHM19_NC_028996: conserved hypothetical protein (XkdN-like); CWR56_06355; phage(gi971763882)     3.58e-16            ClostridioidesdifficileMSENGLSKNINIVDLLLNSDTENLERPSTIVELKRLSTIFGQEFKVMCRALTISKDEEIQNTCLKIDENMKTDIDLPEMQMLTIIEGVCDLDGKLLFKNKELMDKFKAPTPKELARKLLLPGEITNLYRILQDVMGYGKNAVIEEVKN
1357849..1358016                   PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; CWR56_06360; phage(gi971763883)     9.45e-05            ClostridioidesdifficileMYYYWKKKGIRPSLFYAMDKGELKLIEAFFALEIEEEVEKMKHGYGVCPLTGGGM
1358016..1360469                   PHAGE_Clostr_phiCDHM11_NC_029001: putative tail tape measure protein; CWR56_06365; phage(gi971764676)     3.69e-14            ClostridioidesdifficileMGNVREEGINMYLTDNYTPKMNQIISVTDNFRRATVAVSLSTNVMASSIKNSIGSASNRVNSLNSSLRKVQTTASSVSSTMTKLSSSINAVSGVIGSLNGSIMRLAITIAMIIDYFNKLIQKKNEFNSNIMIILIFKAKSDEVEKTKNKLLGNLKKIGGKIWNIVIKAKDMTKRVISSILGKLKQVEKRPYQGSINLKDMVSSAMGRILPKLMLFKNTFWSGVIAIKDMASGIISKVFPKLRLFAGKVWSGAIAVKDMASGILGSIKGKISDLTNGATIGVAVKKGVDLLGQEQNQKVVLESVMKRNTGKVNQIDVDDYYGSLVRMANDTPFDPEDVVAMGTKAKMISNITGGKKEKDITQAMVDVRALNMNTSSEQDVSAAFLSAAKGNMESLNTLVGENYKTFDEALEGISVKQMGLAKEMSNTIPGIISGAQTSINNGLKSIVKPFDDILGQGLKKIKTFIESGLGNLAGLSEKMAGKIGNVMNGKIIIGNKYDQMQSRSVKNGKEFSDSTQYRISNEAEKRKMMVENKQERFENHAATMIGNAPKAIVNAGSTLLQNIDFTALIDSLLPVVNLVNNLLDSINNKSPIAQGLISIFGTIVTTAFQLIGPVVEAVSPIITRIFTFLGEYAPQINNFIETLGVIWKTVWETLGPLLETGWKIIEPILGAFFNILDKVCKIVKDICKWWQTMINKIKNGSITGTVLNLVEKSKKNYKDNPYAGTKAGDSGKAYSGKKGNNAFGLNYVPYNDYQTRLHEGEMVLTKQEANQYRSRKNGGNINIAKLADTIVIREEADIEKITSKLVASIQLAQLGGVL
1360469..1360891                   PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; CWR56_06370; phage(gi971763888)     6.48e-68            ClostridioidesdifficileMEMWLRQAEDRFRFPVFPSSFSINGKAAVNSSSILKIGEIATFGGVALKSISISSFFPNKDYTFCDYTGFPSPYDCVNKIEKWMKEGFILRFTITETNINMEVIIEGFSYEERDGTRDVYFTLDLKEYKRIKIPKVTPKQ
1361173..1362702                   PHAGE_Clostr_phiCDHM19_NC_028996: putative cell wall hydrolase protein; CWR56_06375; phage(gi971763891)     0.0                 ClostridioidesdifficileMIINRSKDSSSNEISFVSKDMGFLLTQSEVSYNFKDKLVEDIAKQVFAENRLSVGIIAKTNVKYTKMFIGVNGYDTIMSAYTEASKKTKKKYMIEANLDKFNVIEKGTVTLSVMFEEGFNIINTTFSESMENVKNKVIVVDQYGSKISEKIDNEIFKEVNVIMQKVIQQQENQDVDIDSEFNGIEKSCSLKGYGDVSCITGRGVKVKDSYTKLVGLFYIDTDKHTWQNGEYQIELELNFQNLMDEKSAGQDEPKEESNLGGEDYAGGKEFTAEFTAYCPRKEEGGDTDCRKKKLDPSKKTCAAPMVGKYEQTYYTKEFLNKHPLLNYGDEIQVITGVSGRDGVYKVNDVGPAITIEKNGTYHIDILFGNVEEASKFGRRKGKIIIGGYSGNVSDKAKIVISEAKKHLGKPYKWGGNGPSSFDCSGLMVYCFKKVNVSLPRTSNQQSKKGKKVEQKNLQAGDLVFFHNPVSHVGLYIGNGEFLHAPQKGDVVKISKLSSRRDFNTARRVL
1362718..1363044                   PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; CWR56_06380; phage(gi971763892)     5.59e-65            ClostridioidesdifficileMANPINEFIGIIREEGKYHNQPSFFIGKIKSKLPDLKIETNNIILEKEDILIDSWMIDRQLETFDTETNQEHQHEVKNPFIDNFESGDMVIMFRIGEKFAVVSKLVSL
1363044..1363472                   PHAGE_Clostr_phiCDHM19_NC_028996: conserved hypothetical protein (XkdS-like); CWR56_06385; phage(gi971763893)     2.64e-83            ClostridioidesdifficileMSTIFPFIGVPEDYILPKTEELPIFREVAWDFEKDEPILEKGDFKIIEKKEALKVWIYKCIKTNRYEHEIYSLEYGTELSELIGQKYTKGLTESEASRFIKEALLINPYILEVNVKSANFNRDILSANVKVSTIYGEVEINV
1363465..1364517                   PHAGE_Clostr_phiCDHM19_NC_028996: putative baseplate-J protein; CWR56_06390; phage(gi971763894)     8.41e-180           ClostridioidesdifficileMYSDQTYEVIKNRTLENINLDIYKGEGSFLNNMVSGNNLELSKIYLELSKMHKMAFIQDTYNQFLDKRVNEFGVYRKLGTESNGEVEFIGEKGTVINNGTIISYRDLLFVVIKDVTIGSEEGDNSPVQALEVGKKYNLPTNCEFKLVDNISGVTKITNTRSFEGGTDIETDEELKERFYKIQRNQATSGNKAHYEEWALEVDGVYNVKVYPRWDGPGTVKVLIFGKNNQAVDTETIERCQQHIDEEKPIGPTITVVTPLPIEISISAVMKLEDGYTLDNVKESFLESINTYFRDIRGEIIYTKVMGILINTTGVHDLSNLLINGSTDNITINEDKIPSVTTVNFSEVENQ
1364514..1365212                   PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; CWR56_06395; phage(gi971763895)     2.00e-66            ClostridioidesdifficileMKLIDKLPSFDRNYIVEEIQGAYDTELNILKEDIDDTFNQLFVDTATWGLDMWEDILCIEKKELDFDTRRSNIKAKMRSRGTSTIEVIKSICEAYTKSETDIKVYSDEFTFVLSFIANNCDYKTLLDCSDMIERVKPAHLLHYLEPIILDKSMVYCGGGMVCSEEVKVHPYFEPIIKCSAVVNCGAGMISREEIKVYPLSIKCIENNCKINIAIANDTGVENVVVYPKSEVV
1365213..1366196                   PHAGE_Clostr_phiMMP02_NC_019421: tail fiber; CWR56_06400; phage(gi414090390)         4.84e-58            ClostridioidesdifficileMEEKFYIILTKIGREKIANATALGELVGLTKFQVGDSNGEYYEPTEEQTALKNVVWEGNINSLRIDEKNPNWIVIETILPGTVGGFMIREAAVLDNENNIIAIGKYPETYKPRAEDGSIKDLVVKMILQLSNTSNVTLEVDPTLVFVTQKDIQDLDDKFDKNIKEIKVKIGEELLSTEAKNLSGAINEVVEKIKNISIDDVIGGQIQTELSVLKNSYNKLSEKVLDILIYLELESEIDVDEAGYWYDTLTNAKNIIAIEGLKLDLNRKCITGELGSVTFKNVVLPFNANRVRYIHEMDNNFVETKSNRAYSIGQTDITLNKYSYEIR
1366213..1371534                   PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; CWR56_06405; phage(gi981220878)     5.06e-165           ClostridioidesdifficileMKRTKLLQRGNFFGDKNMVVDEFDEGYDNYDFINFFTGCCNYTFGLKNNNILYGCGDNSNFQLGLGEDNTTRKLFTKIPNISTNIKKVACGESHAVILTSDGELLVAGINTDGQMGLGLEKVGKTVSTFEKVPEIKGVKDIACGLQSTYLLYNDGTLYVAGNNLYGQLGLGTNGASANVNTFTKVDVDNVKAVFSYNKSAFIIKNDNKCYSTGFNNQGQLGLGDKNNRDLFSLVSINDVKTIACGSEHTVLMTYNNDIYGCGKEKCFGNALQSSLFTKIEEVNIKTIACGHGNTMLIDNKGTLKVAGNNDIYQLGIANYSENIDNSFIDLKNIVAKNIFIGLSHSILIDSNNDSYCTGDNTYGQLGSFFDDMHIVEFKKMDSEKYSYSNYINLIKSEDKLTLLKEEMEIKDIELPLDIHSVRDVVFSPYCTLVILGNGDVYGLGNNRYKGMGSDLPSQLNELTKLSISNVKSIVASKNISGGIFYIKNDDTCYYSGPNSNSIAGVLPSNSDIFKKISIDNVKKVVINTDLSNWFSLIVTNNKQIYTSGKSSSYVNGLSNKSASQYTEIGVSNVTDAYSSYNATFIVADEKKVYATGINTNYLLGVNPNDGVNINLTLINNWFYVNPSGASYSTNSCTNDITKINNIIIYEYMAILCTNYGSFLTGYHGTLWTKPSDSTYRVQQQGITHAGYISNYIYNYYPTRCTQSSYSTNFAYLYYGESTSNLKNVNPDNLLISGGSSYIHQYGRNYLNNQSSNNIAASNINSGPITSDKAIFLYKALLYLSSNTLYGFGNISESAKELDVSDTQDGYNATNYKKVMKNIKNIFIPPYDLSRDKTRFAILTDKSLFICGYNSKGTHGISVNSSLNLNNKINYNKKNSSSEISSNIQEIYSHSKSTYLLTNNNMLYSVGLNDVGQLGVGDEINRKVFTKINIDNIKSINVNRFTDNSKHVFAIKNDNTCYAVGLNNSGQLGIGDNVNRNVFTKINVENVKYVAVYGNTSLLLTNDGLLYGAGNNGKGQLGLGDTTSRNIFTRIPINGVRDVYICNDVSIIVKNDNTCYVCGFVNGYFGFTEGSISTFTKINIENVKSVVTAGSEATFFITNDNVIYTTGKKERVFFSTETNDIKGIRVINNIINAKKIVVNGYTSAILTNDNKLFVGGLSGYGSIANNNNTNSVEDVKDVFVTANNTLYIDNNNNLISSGRDTYGISDESYRDMSVPYYKVSIKKDVDTVFSSYNTIFIKDIYGKFYSSTGDNRYNHLGIHHRYDNDKNEALEGSLHSYFKTDNTSDKIVFNKKNEKLVMFNDKYIKTNNKYINYKNIFKDNFKYTSIILPFEVSDIDISKTHSLAVAKDGKLYGIGSNSYKEINQTLEDIELLTLTEVNISDVKKVACGDNYSYIIKTDNTLWSYGKNTEYQLGVGHNNDVRELQKVTGLPSVKDISIYNSMTLVLTNEGELYAQGYNTNGLFGLGESEKDKIIRTFTKVLTNVKEIKSHNDDHILVIKNDNSLWITGKNKSMYKISISITDLYEFTKIPIPEHLNDILDIELSDDTIYMITKVDTSKASIEIVEKSISQVRVVVQDPNNVIEKLEMFINDELISTKTNLEINSIIFEIPQNKIVLGENKILIKASSPTGDLYSSMFIFKSETGLKVKKDSILMINNKVYSIINITENNTDLIVTLNEGLKDDMMENNPIYQLINKTKVQVKINKSDLFKDMKLVEIKKSDSSYQEIYELEEANIKSAQPKIIVEKGDKWTAIKRPSMIFRYDAESNEPQA
1371551..1371904                   PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; CWR56_06410; phage(gi981220879)     6.64e-19            ClostridioidesdifficileMFKFDKNKIEQIKQGRKVEMQYKDISDISIGQVKQDDDITNNFIANAEIYEMLLNQSSVNEASNISSFSVRKSGGESGMVEVYVALILRGKKTIEEVPAVIREQVRIRCKELEIPVE
1372167..1372427                   PHAGE_Clostr_phiCD111_NC_028905: putative holin; CWR56_06415; phage(gi971820067)     2.35e-47            ClostridioidesdifficileMDKLITELSSLGAIGILCALLFKNTMQEKKEDRDMYKKTVENFIELSTQQQEINKNILVQMGIMKTDVEEIKEDVTGIKGMLQNGV
complement(1372648..1373103)       hypothetical protein; CWR56_06420                                                    N/A                 ClostridioidesdifficileMGLRDKFAQSFARSKTMSGPEKKANEIMGKLLLKKAILPIVLMFVIIIAGAMLKINSWVTLGINLVIAVGAFFYIRNSSKKYQNFKPYVGNLISLEKKGKKEYVAIIKQGKLPVKLQIAYGGEDLEHVKKNQMVQISYNPDAKIAILVNRQ
complement(1373331..1373750)       PHAGE_Brevib_Abouo_NC_029029: transcriptional regulator; CWR56_06425; phage(gi971767216)     3.25e-10            ClostridioidesdifficileMDTLGERIVYLRKAKNLKQYELEEMLGCDNLSKFERNIRKPNYEILKSIAEIFNVSVDWLLNGDNLSHKSDLICDSSSNYPLNSINSNEIKLLNNFRKLNDYDKAKIEGMIELKLHEYEKEKDLGKIEYNKNKDEKIDK
1374049..1374258                   PHAGE_Bacill_BCJA1c_NC_006557: cro; CWR56_06430; phage(gi56694875)                   1.40e-10            ClostridioidesdifficileMDARKKWIPFLGVQVKQRLIELNMTQRELAKKIGVNENYLSAILNGRRTGKKYKSSIYQLLNIEYSEDD
1374278..1374499                   hypothetical protein; CWR56_06435                                                    N/A                 ClostridioidesdifficileMNILVCKLDSDGVIECCRAIDDFITALSNIKSLNMERLNTLTKYSSTCSILLKEGNYEGCTIVYRKMLEELKT
complement(1374716..1375114)       PHAGE_Paenib_Vegas_NC_028767: helix-turn-helix family domain XRE family transcriptional regulator; CWR56_06440; phage(gi971741618)     2.82e-09            ClostridioidesdifficileMDTLGKRIAYLRNSKKLTQRKLMDILKFENLGKYETGDRKPNCDILMSIADYFNVTTDWLLYGKEKVNVNSSVKEDKEDYLHVTNDEMTILNLYRQLNERDKIKIEGILELKISEYKDLKKHSSNNNEDKMV
complement(1375535..1378027)       PHAGE_Mycoba_Enkosi_NC_028936: transporter-like protein; CWR56_06445; phage(gi971757643)     6.20e-11            ClostridioidesdifficileMNHNTSIKNKDSNPKIFLVLTLYLLGIFMGAIDTGIVSPARTIIQNSLGVNEKTGIWMITIYTLTYASVIPISGKLADKIGRKYVYLVSIFLFGSGSLICGLSSLFSNFYILLIGRVIQAIGGGGIMPIATAEFGTTFPENKRGMALGLVGATYGIANILGSSIGSTILSIFGTQNWKWLFFVNLPICLIILIGGVFCIKNNKSESKEKIDKLGTLMLICIIVSLLYGLMNIDFFNFKNSIQDISVYPYLLTFIVLIPIFIFIENRAKDPILSFEYFLNPRILIVLILSLIVGIGMMGMVFVPQYAENALKINAGSGGYFVAILGLFAGIAAPLSGRLIDKFGAKKILLLGFSVSMIGSLYLVLIALKTNTVFSVCVSLIFMGLGMGFTMGTPLNYMMLSNTRLEESNSALATLSLIRSIGTSISPAIMIGFIAHAGLSVQDNIMDLVGKPSTPKIVQLEELENMIDDLKSDPEMAKNLKNVSIPNMNDTSNINMDMTGGKLPKSLLNKVQSADTTNITNITKEISTTMFDEKVPSIITKIQKNVQKGIDGTQSGINGIEDGENKLNSGIKGVQTGIDNMVKARAGINQGIDGVKKGIAGVDKGIKGMEQGLEKQDEAIKELTTAYNKIPTTEKTPTDNENNSNEQNQSNTSNSESDDTKNDSTENKNNNSSENKPNVNEQKESLNAQIQQLKKTRDDLNTKLQKNKTQKNELSKKLRSMESQKKELQSKLNNSISQKKDMEKSLDTMQQQKKSLQAVLAKTQEVKTEIPKAFDKSKLDYINSIENNRTKIENTLQSTLNSGFKQMYITVFCVNLLAFIILLFYKENKTR

#### region 4 ####
complement(1667609..1668145)       PHAGE_Bacill_0305phi8_36_NC_009760: membrane-bound metal-dependent hydrolase; CWR56_07750; phage(gi156564213)     1.69e-08            ClostridioidesdifficileMIKETHERGGYIFALLILPFINNLYLVKYDIAYKIVLIIIYIYFAYLGSLFPDIDMRGSYISKKFMLIYKLFGSRFRHRGFTHSLIALLLIYSFFKSLTIFTNNNIVFSCLSSGFIIGYLSHLCLDLITKEGIELFYPITINISLLPIKTNSKTEKFISKLLNFIVIFLIGYQFYILL
complement(1668258..1668962)       superoxide dismutase; CWR56_07755                                                    N/A                 ClostridioidesdifficileMKKKILIPVIMSLFIISQCITSFAFTPENNKFKVKPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQNLDSLPKDIATTVRNNAGGAYNHKFFFDIMTPEKTIPSESLKEAIDRDFGSFEKFKQEFQKSALDVFGSGWAWLIATKDGKLSIMTTPNQDSPVSKNLTPIIGLDVWEHAYYLKYQNRRNEYIDNWFNVVNWNGALENYKNLKSQD
1669135..1671009                   asparagine synthase (glutamine-hydrolyzing); CWR56_07760                             N/A                 ClostridioidesdifficileMDGNISIYYKGDISKKEDIKFKIKESVNNTRLSSRIEYKDEEKTFDFERFNVIDAIYGNKPFEKDGKVIVFNGNIYNYHEIKEELIKKGHNFTTNDDIEVLLASYIEFGKNCVHKIKGMFNFIIYDRENESIFGARDLFGIKPLYYINKENAIIFSSEYKFLLEYMKNLNINERSLQSYFSFQYVLPEDTMIQGIRLIPAGHYFRVENGILSLKRYNKLEFRSSTKFFYTKNHLGNRDVNEDDIRNIVVDSIVTHMEEEKEIGTFLSGGIDSSIITTVASQINPNIKSFSAGFSVKGYSELEVAKKTADKLGIENIQINITQDEYIKSLPNVIYSLDDPIADPSEVGLYFLIKEAGKHVKVALSGEGADELFGGYNIYKEYSTMKSVVNSPTYIKSILGRVSELMPNIKGRNYLYRATTPLEKRYIGNAKVFENSEVKRFFFKYKEKNIYEYLLSNLYRDAQKNNYDYISKMQHIDVNTWLQGDILQKISKLSTAEQVELRVPFLYKDVFDVAKNLRMEQKINKNNTKVLLREAFREIVPEHVVQRKKLGFPTPIRVWLKDSLGDIVKETIYNSNVDEFIDKKYAIKLLDTHLKGHRDNSRKIWTIFTFCLWHQLFIEHKNVEY
complement(1671101..1672537)       PROPHAGE_Shewan_MR-1: protease DegS; CWR56_07765; phage(gi24375431)                  4.34e-19            ClostridioidesdifficileMICTIKPLKISIKKSTEPLIEFISDTTYKNKSSSYIKEVYFTRYIGVDDSIDKYIEKIKNIDTYFFNNPTIPYIRLNNLKINFDKEQTDKMLKIFNIYNSSKFNSWDLYNIDFPCKIENDTLNWTKKIAFKNTLDLFSTSMPNCTSSIIKNFAVKLLCWIDYFLPKLFYNKVKTTISPKIVYFGNIKRQELFFLYFLSQLGCDILYINPNKDILDLYPECSKFSTLFELSRKTPNILEIPFERHITNINYSENTNKTSPTTNKPNSKNTLNNTNLTSKKIVQDEEVELSYEDLAKLSASVVMIVVCNNENKPFKSGSGVVINNEGYILTNLHVVNDGYSFLVRFENDDKVYTSYQIIKYHSDYDLAVIKVDRKCKPIPVKVSKKPVRGQKIVAIGSPLGLFNTVSDGIISAFRDFETVQMIQFTAPISSGSSGGALLDMFGNLLGLISAGYDDGQNLNLAVESSLVKIFANNFIEIVN
1672793..1673191                   PHAGE_Helico_phiHP33_NC_016568: transposase; CWR56_07770; phage(gi371671361)         3.46e-53            ClostridioidesdifficileMYKSNKNIVYDCKYHIVFCPKYRKPVLVGEVEKMLKEILPYKADELGAEIIEMETDKEHVHLLISCDPQYGIHKVVKGLKGFSSRVLRENFPHLKSSMPSMWTNSYFVGTVGSVSLEVVKQYIENQQVRTKK
1673188..1674351                   PHAGE_Clostr_phiCD211_NC_029048: transposase; CWR56_07775; phage(gi981220996)        0.0                 ClostridioidesdifficileMIKTHRVKLNLTRTQFELVREKQMESANCWNYIVNLSKEYYFEHKQWIKKNDIQKLIKGKYNLHSQTIQAISDKFDANRKTISELRKKGNTKAKYPYKTKKFYIIPFKASAINRNAKGNLKLSMSKGRYLELDFNVENIKTAEIVWRNGYYLYYTFDNELNGVVAKGTNTVGVDLGEIHSIASVTNKGVGLILSNREGRSIKQFRNKMYAYISKRLSKCKKGSRQSKKLWRLKNKIRSKTDNQLMNLYHQTTRKFIDFCVEQKVCEIVLGDIKGVEKDTKKKKRLNRVNRQKISQMEYGRIKDYIKYKAKEQGIEVKLVKENYTSQTCPKCSKKHKPTGRTYSCTCGYETHRDIVGAWNILNKKHKYGLVDFRINHKQPINLKVSTV
1674711..1675289                   PHAGE_Acinet_vB_AbaM_ME3_NC_041884: putative virion structural protein; CWR56_07780; phage(gi100294)     3.42e-26            ClostridioidesdifficileMGITLSKGQKVDLTKGNPGLKNILVGLGWDTNKYDGGFDFDLDTAAFLTGASGSVTNDGDFVFYNNLKHTSGAVEHLGDNRTGEGDGDDEQIVVDLSKIPGEISKISFTVTIHDATERRQNFGQVSNSYIRIVDKDTNEELIKYELGEDFSIETAIVVAEIYKHNGEWKFNALGSGFEGGLAALCGNFGINL
1675328..1675906                   PHAGE_Acinet_vB_AbaM_ME3_NC_041884: putative virion structural protein; CWR56_07785; phage(gi100294)     2.50e-29            ClostridioidesdifficileMAIVLKKGQKIDLTKGNPGLKNIKLGLGWDTNSFDSGYDYDLDVSVFMVGESQRVEKDEDFIFYNNLKHPSGAVEHLGDNRTGEGDGDDEEILVNLETMPKHIQKIAVTVTIYEAAERRQNFGQVSNSYIRVLNSENDEEILRYDLGEEFSIETAITVCEIYKYNGEWKFSAVGAGFEGGLEALCRNYGLNV
1675992..1676621                   PHAGE_Acinet_vB_AbaM_ME3_NC_041884: putative virion structural protein; CWR56_07790; phage(gi100294)     5.00e-19            ClostridioidesdifficileMSINLSKGDKIDLKKSNPGLSNILVGLGWDPVQQSGGGFFKSLFGGGQADIDCDASVFMLNQEGKLSGIKDLIYFGNLKSACKSVLHTGDNLTGEGTGDDEQILVNLDKVPSNIHKLLFVVNIYNCVDRKQHFGMIENAYIRVEDQGNKKEIAKYNLSDNYSEKTTLIVGAIYRKDGSWQFKAIGEGTKDAGLKEVMQNLDRIECAYGI

#### region 5 ####
complement(2431468..2431863)       PHAGE_Clostr_CDMH1_NC_024144: putative anti-repressor protein; CWR56_11400; phage(gi640884877)     6.04e-78            ClostridioidesdifficileMLKELLDDAGFDNKSKLLTAKTLYKKAGIDLPIEINEEEHYFDTKQIASKLKIYSKSNKPAQMAVCEIIKKIDLEDGEVKGVWTNGSWTGTVNKYTKSVIDKVRTWIEENNRPTKIAGEKKNYHVSYKIE
complement(2431916..2432281)       PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; CWR56_11405; phage(gi100019)     2.58e-26            ClostridioidesdifficileMKNELMMFEGKEIEVFEFEGRILFNSKDVANCLDIKNVNENIRLMNKKQVVKLRNSDISNTDIRKLNNAGENFLTESGVYKLIFKSRKEEAERFQDWISDEVLPSIRQTGAYITNNAIPKS
complement(2434091..2435014)       PHAGE_Clostr_phiCD505_NC_028764: exported protein of unknown function; CWR56_11410; phage(gi971819848)     7.43e-13            ClostridioidesdifficileMVGAFVLPNYAIILSEMSNLWGNFIMWILVPIITIVLLIIAVSSMQYILVMIAFLLIIYSFIEKKIVMGLVSVLFFTYSIYLCATWEDKSLIADNKVETVRAQRETVEREKEMERRRIQEEVDKERYIEKHGMEISENDLKVKLEALVPQEYKGKKYELKVGKFKRYSMYFDLTVQNEKFSNSEECKKFVKEIANDLKKIKISKAYFKFHSKDDGGIYNSVYIDYFRNIQNNVDNVENLEFNEFELKTEEEEKREQEKIEQEKNSYNNYIQNRVVDPLDRIKKLKELLDSGAITQEEYNKKKKELLE
complement(2435208..2435360)       PHAGE_Clostr_phiMMP04_NC_019422: hypothetical protein; CWR56_11415; phage(gi414090473)     1.92e-11            ClostridioidesdifficileMDNFLFNVLASVTASYIVYLISKLIKKVKSHSTAKSDLKIDINFKYHRKK
complement(2435634..2435966)       hypothetical protein; CWR56_11420                                                    N/A                 ClostridioidesdifficileMNDMARDVFSVKMTPLEAQKMVEKNLEADLVSVDIYNLENNKSIIVTIFEKYYARSNSDAGLVVICENTTGKTLVKITSTGSAIGLFQIDWGTGNNLIKRVKKILIDYII
complement(2435993..2436247)       hypothetical protein; CWR56_11425                                                    N/A                 ClostridioidesdifficileMENKDIKLTICIFAFVIGIIVLFCCIGLGQFNMDCIIKQNGGSIATEQYNIYLEQSISQYRNFGSILVLLGGIGILFDKSVRKY
complement(2436388..2436555)       PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; CWR56_11430; phage(gi39653729)     1.70e-05            ClostridioidesdifficileMTHYCIQKLKWKPSEYMNLEVNERALAADSILIKIEDEEETMKEAEREKKRGRRR
complement(2436679..2437197)       PHAGE_Geobac_E3_NC_029073: transposase; CWR56_11435; phage(gi985758480)              9.15e-71            ClostridioidesdifficileQFISNLKKSLNKLAKLQRELSRKTIGSLNRNKARLKVARLQEHIANQRNDFLQKLSTKLIKENDIICIEDLQVKNMIRNRKLSRSISDVSWSEFIRQLEYKANWHGRQIVKVGKFFASSQICNKCGYKNEEVKDLNIREWIYPSCNETHDRDINASINILKEGLRLITIQNK
complement(2437487..2437861)       PHAGE_Clostr_phiCD505_NC_028764: Transcriptional regulator, BlaI/MecI/CopY family; CWR56_11440; phage(gi971819872)     1.07e-15            ClostridioidesdifficileMKISKLPEAELKVMRYIWESEKVLISREITKSMEQKYEWKDTTIFTVLKRLLKKRVFRNGENRVYTLCISKKKYQRFTKEFLKNTHKNSILSLMSALCSKDDEVDGDILNLLEEYFKNLK
complement(2437966..2438340)       PHAGE_Clostr_phiCD505_NC_028764: hypothetical protein; CWR56_11445; phage(gi971819871)     6.71e-16            ClostridioidesdifficileMKEEILIEKLLRAELIVMEYLWKKDTLMPKKEIVKEIKQIYGWHKSTIKILLKRLVAKRYLARYIINSQSHYKIIDSKEYYTFKKKVLKSSKSIKIMRSLTTTHKNVSKEKLDLLDEYYRNLKE
2439146..2439634                   PHAGE_Synech_ACG_2014f_NC_026927: recombination endonuclease VII; CWR56_11450; phage(gi100249)     1.60e-07            ClostridioidesdifficileMKNKKGFTLVELLVVIAIIGILAIVALPALFKNIEKAKIAKLEADISAIKSASLSYYADESKYTEGNIIWWTKKDGKITVNSGIGDEDPLAHKIENLGMPYNGSYTLVSSNGSEEYLELNIIIDGEISKSGLDKLEEDYGSSIKIPNDKNMIITFLSNKSDN
2439954..2440058                   cyclic lactone autoinducer peptide; CWR56_11455                                      N/A                 ClostridioidesdifficileFHFLYCCNLYYSFANLSANTTSLLHVYQPKTSEYL
complement(2440670..2440858)       hypothetical protein; CWR56_11460                                                    N/A                 ClostridioidesdifficileMTKYDFNFKLKVAKFYLNREGRDILIVKQYGVYDHSQVERWVNILGESELKIKKFSILYGSS
2441020..2441370                   DUF3796 domain-containing protein; CWR56_11465                                       N/A                 ClostridioidesdifficileMIQKKFFMGFCGFLGFLSLRYFSSGNVADLTYIGFFAFFSNFIIAKINGDKADERYVQDEKAAMAFTGQLAIIELFILWCITIVSRNIELMCVLLSITYAITLNVYAIKLYILEEK
2441372..2441572                   PHAGE_Brevib_Abouo_NC_029029: XRE family transcriptional regulator; CWR56_11470; phage(gi971767218)     1.59e-08            ClostridioidesdifficileMPKFTCNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELFIFD
2441895..2442071                   hypothetical protein; CWR56_11475                                                    N/A                 ClostridioidesdifficileMFRDKMDKCTHMLTAYIGSSYDYCDFIDTHLDDFILEYGEKVVESCLHQVMVLVSKYN
2442296..2442496                   PHAGE_Lactoc_bIL312_NC_002671: Csp; CWR56_11480; phage(gi13095918)                   6.17e-26            ClostridioidesdifficileMNNGIVKWFNNEKGFGFISMESGDDVFAHFSAIQTSGFKSLEEGQKVSFDIVKGARGPQAENITIL
