gi|00000000|ref|CP025069.1|  Bordetella bronchiseptica strain I124 chromosome, complete genome. 5081368, gc%: 68.35%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2079016..2079228                   PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; CWR61_09990; phage(gi460042545)     3.46e-05            BordetellabronchisepticaMPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY
2079248..2081278                   PHAGE_Helico_phiHP33_NC_016568: DNA primase; CWR61_09995; phage(gi371671350)         2.51e-52            BordetellabronchisepticaMIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENRSPRQQAESARRKAEVSRHTQVLDAAQAHYLRQLRASPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYDDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGKGEPKYLNSPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVATLGTSTTPDHVKKLLRASDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSEHDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIPECALRVQIERELARLVQLTPEEMTQVLAQQPARPLAAAAAPAQASAPAAGRDGGSGHADEAPPDWAFEPVHDFEPDAYSVGAVDGEPGMPASGGWQERKGRQGGDWKGKKGDWKGKKGDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGDQQLEVIDHGPHLGLVRDLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRMEFDAARAEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAQ
2082071..2084239                   PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; CWR61_10000; phage(gi331028036)     7.40e-39            BordetellabronchisepticaMKVAKPAAKTAAKKAATKTVAAKTAAADKPAKTTKARAKKAEDKLADLVGAARPAPSGRRPGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVTPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHILRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADEDEGDDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQTELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETNLQWVLDEVAAAHAYSETLERQVPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
2084249..2084327                   tRNA                                                                                 N/A                 GGGCCTCTAGCTCATGCCTGGTTAGAGCAGCGGACTCATAATCCGTTGGTGCCGAGTTCGACTCTCGGGGGGCCTACCA
2084469..2084771                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CWR61_10010; phage(gi157166007)     3.67e-23            BordetellabronchisepticaMRVIALSTLRQFWEKHPAAEQPLKAWVDEASRARWAPPADLKAQYRSVSVLKNRRVVFNIKGNDYRLIVAVAFKLGIVYVKFIGTHVEYDRVDAETVEME
2084768..2085145                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CWR61_10015; phage(gi157166006)     1.55e-28            BordetellabronchisepticaVNMEIRPVRTEADYKSALEVSLLMESDPELGTPDGDRLDVLATLVQAYEARHYPIELPDPVEAIKFRMEQGGLTPKDLEPMIGKRNRVYEVLNRKRGLTLPMIWRLHTELGIPAESLIRPPAHA
2085486..2085893                   PHAGE_Pectob_phiTE_NC_020201: endolysin; CWR61_10020; phage(gi448244889)             2.78e-36            BordetellabronchisepticaMGFQLSARDRQRLAGVHPDLAAVVETAAGACNGRFMVLEGARSSQRQSRLLAQGVSQTLCSLHIPQPDGWAHAVDLAPLVAGTIPWEDWASFKRLAEVMKQSAARLEVPLEWGGDWTTLKDGPHFQLPRGWRGKA

#### region 2 ####
complement(3055408..3056712)       PHAGE_Bacill_G_NC_023719: gp258; CWR61_14470; phage(gi593777714)                     1.37e-162           BordetellabronchisepticaMPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFDGLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATLDELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKTGARGLRSILEGSLLDTMYDLPSQGNVSRVVLEANAVEGDGKPLLIYADESEAASGEKAGRGEVRDAAA
complement(3056817..3057470)       PHAGE_Bacill_G_NC_023719: gp257; CWR61_14475; phage(gi593777713)                     1.14e-61            BordetellabronchisepticaMQRFTDFYAAMHGGSSVTPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVLTSRAQT
complement(3057473..3058783)       trigger factor; CWR61_14480                                                          N/A                 BordetellabronchisepticaMQPVVETLSGLERRVDLAVSVAEVEKEVQAQLKRVGRTAKVAGFRPGKAPLAMLERSHGPGIRYDVINSLVGRAFEQAVDGAKLRVAGSPTLTPKTEGVADDTLAFTATFEVYPEITVPDLSALAVTRYDTQVTDAEVNQTLDVLRKQRAQFETREGRASQDGDRVVLDFAGTIDGVPFEGGKAEDFPFVLGQGRMLPEFEEAARGLKAGESKVFPLKFPDDYQGKEVAGKTAEFTITVKEVAEGVLPEVDAEFAKSLGQAEGDVEKLKADIRTNIEREVKARLQGRTKGSVMDALVEAGKFDVPKALVDSDVEGRIAAAREELKQRGVPNADSVPMPAEVFSTESERRVRLGLLVSELVKQAQLQAKPEQVRARIEEFAQNYEQPAQVVSYYLADRQRRAEIEAIVLEDNVVAHVLENAKVADEKVPFDQLMGMA
3058974..3059555                   PHAGE_Caulob_CcrColossus_NC_019406: UPF0114 protein; CWR61_14485; phage(gi414088293)     5.84e-32            BordetellabronchisepticaMARKPPMHPIQEPRLGPLPALIFSSRWLQLPLYLGLIVAQGVYVLLFLKELWHLVTHTLSFGEQEIMLIVLGLIDVVMISNLLVMVIVGGYETFVSRLRLEGHPDQPEWLSHVNASVLKVKLAMAIIGISSIHLLRTFIEASNLGSPNSRFTETGVMWQTIIHVVFILSAIGIAYVDRLTSQSAGHHGAHPSH
complement(3059652..3059858)       PHAGE_Lactoc_bIL312_NC_002671: Csp; CWR61_14490; phage(gi13095918)                   4.95e-21            BordetellabronchisepticaMATGIVKWFNAEKGYGFIMPDDGSKDLFAHYSEIRSEGYKSLQENQRVSFEVGQGPKGPSAKNIKVIA
complement(3060199..3060765)       DUF924 domain-containing protein; CWR61_14495                                        N/A                 BordetellabronchisepticaMSHSMADPAALPDVAAVLAFWREAGPARWYAKDEEFDRTFTMRFEAAHMAAARGELMSWSGSAEGVLALLILLDQFPRNAYRGTGHMFATDGLARQVCEQAIAAGLDRQGPEDLRQFYYMPLEHAEDLAAQEQCVRLMAPLHAETLRWAEIHRDIIARFGRFPHRNAVLGRVTTAEEQQFLDQGGFAG
complement(3060849..3061052)       PHAGE_Lactoc_bIL312_NC_002671: Csp; CWR61_14500; phage(gi13095918)                   4.05e-21            BordetellabronchisepticaMETGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKGPQATKIQIL
complement(3061359..3061679)       hypothetical protein; CWR61_14505                                                    N/A                 BordetellabronchisepticaMDISSHQLAELANGVCLETRVDGEIIGTYVVLGPADLDAIADIVPRQRVEEGADIHAAAVASVDGAQMEIDQVIENMNPGDVAVFFCADGDCYGAALDLLGLPIDE
complement(3061721..3062002)       hypothetical protein; CWR61_14510                                                    N/A                 BordetellabronchisepticaMVYEDFFWFMAALVALALVGGALFGRLGRLAHSVIAMLGLAIAVGVAVLLGARGEDVGPYAPLLAIAAFMFCLMIGGAATLVTRRVRRRHLTH
complement(3062077..3063324)       PROPHAGE_Shigel_301: serine protease; CWR61_14515; phage(gi24114232)                 1.21e-08            BordetellabronchisepticaMKPTSILACLPRYLGACALATLAVAAFAPAQAQTSLPAGFGFAEVRQYFSGLSPDALRQQAAWLAPAQLRPYLSSLSDAQLRQYVQALTPGQITQGLAALTPAQRARLQREFERQARRQVQQAVRAEVAARSARAVAMGQSASMLLLDAEMGTLAQRQDDLRRGHDEGAFWARGSANRFKVDTPDTPAFDLRVEYLALGADHGWRLDTGRLYLGAYAGVSRARMDDNDLMHGRIESRFLGTYLTYVDNGGFYVDAVSKLGRIDESVSFDLPLGLGDYDDDVSHTTYTGSIEAGYHFKLPQRWFVEPQAQVIYSRSSQTSVQGRAGVRAGRDYTLAGGATLRPYVSASYLHEFSHDDSVDFGGKSYDAELPGSRWQLGAGAALDVGAHRAYADLRYGHGASISQDLSLNIGYAYRF

#### region 3 ####
complement(3558587..3559366)       PHAGE_Bacill_G_NC_023719: gp245; CWR61_16830; phage(gi593777701)                     2.99e-41            BordetellabronchisepticaMARDKIVARNVSMRFGDVLAIKDATCSIGEREFVAIIGPSGCGKSTFLYVIAGFEGISGGAIELDGEPIRGPGPDRGIVFQEFVLYPWRTVMENVTLGLDIKKTPPQEARRRAQKWITLAGLDGFEDAYPSTLSGGMKQRVAIARALTYDPEVILLDEPFGALDVQTKNYMIHDLQNLWTEANKTIVMVTHSVSEAVLLADRVLIFSARPSSIIADIRIDLPHPRGAGDDSVKAYENEVTRILSAEVDKSMSMERRVAA
complement(3559390..3560217)       PHAGE_Bacill_G_NC_023719: gp243; CWR61_16835; phage(gi593777699)                     7.62e-17            BordetellabronchisepticaMSSAMASSMPGGDGARIFDRLLVPLVSLGVPLLIWEFLARSGLVSDFLFPPPSSIFSTLWSDSGADVHGGQLYRHVYYSMMRLLAGLALAAAVGTLIGILIGLTRWGRFVFKPLLSLFMPVPTLAWTPILLLLIGVDNKTTILIVFIAASFEVILNVVAGIENMNVKVFWVARSMGASRSQIFFKVIVPGILPYLITGVRLGSGYAWRALIAAEMLAASSYGLGFMIYEASEFMDMTTIYGGLIMIALLGYLIENVLMGAFEERTVGRWGVQVER
complement(3560214..3561086)       PHAGE_Bacill_G_NC_023719: gp243; CWR61_16840; phage(gi593777699)                     1.13e-15            BordetellabronchisepticaMKPLAATTAHTAMIRPAPRRAPGAFAAYAEFGRFMLPIVALLVFWEFAVRAGWIASNIFPSPSMIFARASEQLFSTGPEQGMLFKHIGASLYRAISAFVLSVLIGIPLGFCLGLMPAVHRWTSPILSVMLPLPAVAWTPILLVAFGQGDRTIITVCFLGAFFPVLYSTIQGVKAVGKQSIWVVRSMGGKRRHVLLNVLLPSCLPALISGLKLGMAHSWRTLVAAEMLAAISTGLGYMIFAARSYMDVSTMFVGIALLALIGMAIEYGIFGVLEQRTIRKWHGASRIGGSK
complement(3561100..3562074)       PHAGE_Bacill_G_NC_023719: gp249; CWR61_16845; phage(gi593777705)                     8.05e-07            BordetellabronchisepticaMKSRICRRLAGALLGVVAACASQAQDTIRLGLQAVPTDELYQARDWAQPYGLKTEISTYSSAGDSLKAFLAGRVDVVSGGAARLVTMAAKQPEVFYIVAANQYGGDRYGIIVGPDAPYKSIADLKGKKIGVVSGSGAHGTLMLYLEKNQLSPKDFRFVNMKVEDIAAAVNRGVVDAGLAWEPHVALAEVNGAVKRIQSMKGVNESPNFILVNREYAGKHPEAVAKYIASMIDMSQLTVNDPRKAGEMIAAQLGKSGVSIPPKAMELAVSRIVVDPRIEDRLLDELPAIAEPMIAAGRINAMPEFGKLVQKSYYERAAELAKARQ
3562300..3563670                   PHAGE_Mycoba_Enkosi_NC_028936: transporter-like protein; CWR61_16850; phage(gi971757643)     2.89e-12            BordetellabronchisepticaMKNLAQQSVEENGLSGPRQQRALVTVTLGVTMAVMDGVIANTALPLIAQDLAAPAATSIWIVNAYQIALFMALLPLAVLGESLGYRRVYLVGLYVFTGASLMSALAGSLTALVLARVMQGLGTAGILSVNLALIRYIVPRDRLGRAIGMNATVAAIASTAGPVLASVVLSIGSWPWLFAIGVPAGIAAILTGSRSLPESHRREGGYDWRSAILSATAFGLALLAVVTFSHRLPALLVLGLLAMAIATGWFLVRRQRAVEAPLLPLDLLRKAAFSLSLCTSICSFAAQTLAYVGLPFYYQLVLGFNAVDTGILLAPWPLALAAIASSSGRLADRWSAAVLGSVGMALLATGLLLLAALPREPAITDVLLRMAICGAGFGLFQPANNRAIMGAAPPSRSGAASGMLGTARLLGQAAGAALVAYLLGRAGPQGAVQCLYAGAVCAGVAGVISLARLGRR
complement(3563685..3565304)       PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; CWR61_16855; phage(gi162135126)     1.73e-07            BordetellabronchisepticaMRQLDLRRLILGLSMLSLLLALAGTLYASAVVQRDILLSSTLEDNRVYARKLALAADDLLVNAMRDLAYGAQKIGERPDSRVIAQEVERLQAQTNRFNAVTYVDAHGVFRAVAPHASNIVGRPVATAEMRQALEHRGALISDPFVAPTGRWLIAMSQPVFGPDGAFAGVLSGLFYLHEGNALKALLGERDHRNGSYQYAVDRQGVLLYHPQAARIGESQTGNPLLAEVRAGRGGAQRLVNTLGTEMLAGYAVVPATGWGVVAQRPVSSVVAATQLLVRRTVYALAIWVALGVLCVWWLADRISRPLSQLARAAADLDNPRAADGALSVRAWYREALQIKNALMLVRRKIGTKFEQLRQDSLTDPLTGLLNRRGLEEYLRNTPWQDGAMTVLALDIDRFKTINDNHGHAAGDEVIQSLAAILRSSARTKDVLARLGGEEFAVLLPDVDVPQAPQLAERIRRSIEAAPTAAGVSYTVSIGVACYPAHGASLEAVMRCADEALYAAKAGGRNRTHLYRVGMPLPAGATEAAAGPESSRDARS
