gi|00000000|ref|CP025428.1|  Lactobacillus rhamnosus strain LR-B1 chromosome, complete genome. 3007503, gc%: 46.69%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
1101584..1101621                   attL                                                                                 N/A                 TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT
complement(1101692..1102876)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05660; phage(gi100026)      0.0                 LactobacillusrhamnosusMASISSYKLKDGKKAWEFYIFAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAESEIIRGHSHYQTERILMADYLNQWITKLKVNVKEGSMIIYRYNLKKYIIPKIGDIRLAKYTLKEHQEFISSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWTKDQVGSFIEAAEEDKEPMWLSFFVTLIDCGLRVGEAMALRWSDIDFNKNTLSVNATRIYRAETGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFSTSHNNDFVFTYSSDAKFGQPLRSRATTGAFNRITNRAGLPHIRIHDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQFEKYLNQ
1103047..1103253                   hypothetical protein; CYG41_05665                                                    N/A                 LactobacillusrhamnosusMMKAFKIQDAVKLYSSLKKTYEREDSKIQKMQEEIDREMKKASLTTKPSAEHQGPKRHLKIHRDRPNS
complement(1103221..1104222)       hypothetical protein; CYG41_05670                                                    N/A                 LactobacillusrhamnosusMEDHNLHDEAEAEKKLREYIYVDTDLMNSLLAQFDEGLSTLTTRMNEKTSILTQVATKGGRKSAKISGGVPGIANGSGSAEDSHSMADESSTHNRHQYSENIVYGDYGVEILEGYLKKQFVPVENAEPGDLVLYKDSFSLYDFDSLEAGTNPEIIDPVLRLSTDNVSEEKLDGYKKQLRVIQARTRNASNAKMQIDDMKKKIQKAEQKITEDKSSQENFRSVYAMVNFFSKSMPNSVIVSTEQTVVFAQKSLFRLSPSQLQMLQKNPRTLYIMGIVENKSDNTNWKHQTLTNSQLAPRDIGAIASYLSSIALTNFGISQKEDSLRIRPISMYF
complement(1104333..1104536)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05675; phage(gi100029)      8.85e-35            LactobacillusrhamnosusMNGPVTLSEAHFIGLIIVLIGVYLALFGHKHRWVYWLIDPDKPGSSLWLAAVFIIIGVLMMMVRKMQ
complement(1104560..1104985)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05680; phage(gi100030)      5.18e-98            LactobacillusrhamnosusMANSTIRQADILLRECTVMQVATLDTDTGFPNIVSLTPLKSHRSLKEILFYTDRDTTTIQNVLEKPVVAVYCFNELHHSSLLLRAKAVVLTAEEAIPSFTESLNSFQKSLQYDRPVIIRCNPLTVKIRYNNDIEFSKLNEI
1105368..1105589                   hypothetical protein; CYG41_05685                                                    N/A                 LactobacillusrhamnosusMMNEDKLGYSYSYDLKDGIVKVKDFVKYLESLPSDSTIRIQGISDDRPAVIDDNVYFEKSSGQLVIQPDSLSI
complement(1105590..1106345)       hypothetical protein; CYG41_05690                                                    N/A                 LactobacillusrhamnosusMSDTKIETMCAECRDYKSSAVAEVTDDESLKFICPRGHTFHAVLRTPLYVPIFENALRAYDDEEYYECYLSAVTSLEKFRNTAIKAYFWSTNNHKPMDKIIDKSHAIKYSERSIASFATISLLLFGESAIPMLNKMYDSTEKRNRVIHGTLIPTKGLCEEVIKNVYQVVKFFQISWIDDDGYCPISNYQDAIATDNYEAIISNKKEHELAVLVGKLYTLSAIQVVHKDKELDVEFNRSFKIIMDIHHRVFW
complement(1106452..1107153)       PHAGE_Lactob_iLp84_NC_028783: hypothetical protein; CYG41_05695; phage(gi971743092)     2.64e-32            LactobacillusrhamnosusMAKKVMGADGKQYKVKKPFYKRVWFWILVIVVVAAIGGGLNNKGKSSSESTEKTAVSKTDKSSSSTSKKDSGKITRADFDSIKLGDLMENGNGGAKLDDLKAQFGNPSSTSSSTTNGVKTDLVTWTNVEGGWGANVIVSFTDGNAFSKNLTGFKLGRKQKITLADFNAFQDGTKYADFTSKWGQPDYYNESLIGGQKNVVAGYTSGVKGDLGSNFNVTFTNDALSGKTQSNMK
complement(1107213..1107635)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05700; phage(gi100035)      1.93e-95            LactobacillusrhamnosusMMTDFTSDMLREVLNYGFDRGVGAELTYQLKPYTPSVSNPETRWIAVNMNWHKPKQLPYQAAHEIMHVLHQDPACLYFYSASKNSIEGEANIGGIQILVPLYFAYIDKEDANLNQFMEAFDIPAPMEDTALEAIKEFYIN
complement(1107625..1107963)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05705; phage(gi100036)      1.19e-37            LactobacillusrhamnosusMMSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDFLLGVTDVRSKPEQIDISDSKNDTIMTFEGRPIPPEDLEIIKRLLRGGKHDD
1108098..1108340                   PHAGE_Lactob_iLp84_NC_028783: repressor; CYG41_05710; phage(gi971743095)             3.72e-49            LactobacillusrhamnosusMNEKLKERRKEFHLTMQDISNMIGISKGYYSLIERGERRVSYELAFKIATALKTKPDLIFLEYQSTLSKHIPAQREEVTR
1108337..1108585                   hypothetical protein; CYG41_05715                                                    N/A                 LactobacillusrhamnosusMSKKEHDEHQIQNWEEHDKRQLQSWEELTQEITEHLKSGDQKLQNIHLTNLYDRYDGFKSYGTLLVAVLVNTRDTPKDAPKD
complement(1108582..1108809)       hypothetical protein; CYG41_05720                                                    N/A                 LactobacillusrhamnosusMWDVTFINTQTGLPKTIYGVISIVAEMGDKTEQFSPLTLVHEKARLRGYSFTVFTVNEDPFSLGTNWIPESADGD
1109121..1109669                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05725; phage(gi100041)      1.15e-131           LactobacillusrhamnosusMKATISSPLNRFATRTNTPQKVIAYAAKLGRSTINNYFHGTPIRANEATDIANSMNDSELSYEMANLFLGIPKLFSGDGIYHDLRGLLVTDKREEDEEKASFIKHDIEGLANDPNFTRDDAKNLKAYAFEKLDSTVADLTELNAICEMLGISIMDLFSERLPHYQKLHYMRKDEQAWNKDLH
1109648..1109878                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05730; phage(gi100042)      4.16e-47            LactobacillusrhamnosusMEQGFTLIDPTKPQRTRKPFKPKVYWTPKDVMAHYQVSAATVSRWKKKGAPFVGPGKTQRVEPEKMERWFARQQGV
1110022..1110249                   hypothetical protein; CYG41_05735                                                    N/A                 LactobacillusrhamnosusMRDTKEYWQDVHDQVENVIYKGHADRGWLWMFELSQRMLNKCAQKNPMAATTGHEKQSKLIYRSSLSRKGGARHA
1110242..1110444                   PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; CYG41_05740; phage(gi78000001)     1.21e-16            LactobacillusrhamnosusMLEPDWNTAALNEYQNRQARQEEEPPLDWQGHRWLMARPTLNTTTNSSTNMTSLTSALARLNMTTAG
1110456..1111331                   PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; CYG41_05745; phage(gi39653695)     8.41e-76            LactobacillusrhamnosusMANEIVASVNNRITEMQKNEGLKLPANYSPSNALNSAWLTLSDNSKGPSLLDKTSPQSQAKALLNMVIQGLSPAKNQVYFIPYGKDLTLMRSYFGSLAILKRLDNVQDVWAEVVREGDKFQIGSDRGRTVVKVFEPRIENQDNAIAAAFAVIVDNNGVENFTIMTKKQIDQSWSHAKTKKVQQEFPEEMAKRTVLNRAAKFFINSSSDNDLLLGAVNDTTADEYDNAEPKDVTPNFDDLIDSKPKEEPKHAANAKETKETKPKETSQPDRAEHRPVTDKEVANLFQNQVNK
1111351..1112115                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05750; phage(gi100046)      1.17e-85            LactobacillusrhamnosusMDWQYQSPTWFKKFMACEAEALAELKGEWKPKRDPTALLVGNYLHSYFQSRYAHNKFKQEHPEIISTRGATKGQLKREYQVADNMIRTLRTDPKFKEFYQGKKEVIVKGEIGGVAWKGKLDCLADNHKYFADLKTTMDINKRFYLPEEHRYGSFIEAYNYPLQMAVYQELIRQQYGVQAVPVIIAVSKQDPPDKAAVSMPQDLLDYWLERVKELQPRIEAVKNGEEEPKRCEHCEYCRATKHLTQIISLYDLVE
1112131..1113087                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05755; phage(gi100047)      0.0                 LactobacillusrhamnosusMDLFKLIREFYIQQSVNPLSTGQIALWHGLVYQCNQLGWPSEFNMPNRTLETLTGLSRQGIVKSRNALKQSGLIDFQTNGVKATTYSVIDISRKLSTSDSRQPSSQDDDSMSNSRQHGRQPSRQHSLQGSLQPSRQHSSTYTKQDETKLDKTKRQQTTAPVKAAERPAGEPSSSSSSILDICNFWEGNGFGQLSPFTRESLVDWVADMRKAGSPEPEKLVLNALRTAVESNVRNYKYVNGILKNWESKRLLTVAAVDANDSERKTNQPQRRYGKPVRNEKLPDWAKPGYKPEHKKASAEDRAELAEQLQKLRALGEKN
1113100..1113585                   PHAGE_Lactob_PL_1_NC_022757: single-stranded DNA binding protein; CYG41_05760; phage(gi557308026)     1.75e-99            LactobacillusrhamnosusMLNSVSLTGRLTRDVDLRYTQSGTETGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTHKGALVGIEGRIQTRTYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLPF
1113603..1113818                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05765; phage(gi100049)      6.68e-42            LactobacillusrhamnosusMWHIIERLMREKGYSIRKFSRVAGYKNPTTIYSIKTGQSKDPSFSTMIRIADALGVSLDELRPDKQGEKKS
1113815..1114006                   PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; CYG41_05770; phage(gi100038)     4.34e-05            LactobacillusrhamnosusMSGNSYLKSVRKSIGLTQREFARKIKCSQSHWIKVEDGFSNPSIKLLKQIKKEFPDFDLNKLV
1114376..1114825                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05775; phage(gi100050)      4.16e-68            LactobacillusrhamnosusMTQVTVRLYEQGDKVWRDFKAELLKRYENSAMLDISKIKAFSKIEKQEFNNRIVVSKKAIVEKRAVAGVDDSDTLKTSVNNGLEKISKKRKEARAKYARGIAEAASQCNTLIDVAKRIGKSTTFVKRVASEFEIKLPRRNNGHEEIVSR
1114872..1115126                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05780; phage(gi100051)      4.25e-51            LactobacillusrhamnosusMQAIKTKMMVGDLVMVPDRVFMGVRDLGGVARIIRIERYNARGARQDINKPVAFENNAPKELIATVEMVDGKQRQYYLKDVKPA
1115123..1115524                   PHAGE_Lactob_Lc_Nu_NC_007501: putative Holliday junction resolvase; CYG41_05785; phage(gi78000012)     9.22e-66            LactobacillusrhamnosusMIRLTIPGNPVPQGRPRFTRMGHAYDPTKSRNYKQHVKSVASELNIEPLSGPIRVSMEIYRQLQKSGSKALIRRKKEGKVRPTVKPDVDNYYKSVSDALTGILWEDDNQIVEIHVGKWYSDQPRVEIEAEEID
1115537..1116001                   PHAGE_Lactob_PLE3_NC_031125: sliding clamp; CYG41_05790; phage(gi100053)             9.96e-41            LactobacillusrhamnosusMNKKLTFTVTVLAGLMFGAGATTIADNVWQGHQNIVETKNNIDKLTAKIHASKSSLSDLQHQLSDAQAQYAALKQQYGNDMANKDAQIQQKIVEGQQAVAQKQAEVDAKQQTINDLTSQLEAAKQANNDLSQAIKDAQSIKDYSDQAVKSVSAK
1116013..1116198                   PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein; CYG41_05795; phage(gi48697296)     4.02e-35            LactobacillusrhamnosusMYVVAGLNTETEYYRAKYQSQCIRWINENMAKHTESHNTRGDDIKVNIPEPLIIKKVEDEK
1116195..1116701                   PHAGE_Lactob_A2_NC_004112: hypothetical protein; CYG41_05800; phage(gi22296563)      1.39e-75            LactobacillusrhamnosusMSEEKLYAVKNDDGEYLTVERTAPWWNSPVGTAVRNIDVALAWAEKYGGHVVTFVEEPKKVVLTKEQAEIVERAHSGKFPAASIAFYGDDDEEPLMNAYVNGYTVAKEKKYNVKVPHTKEVWYYKSGDTDLLTICPADKELRGKFTEAEIEHYGLQYCEKEEVTDDDE
1116691..1116870                   hypothetical protein; CYG41_05805                                                    N/A                 LactobacillusrhamnosusMTNKADIDAAQKAIDAANNAINKLDLCGLYDCAWQAHDGYQRIIDYNKEQLEVTDDGIR
1116857..1117060                   hypothetical protein; CYG41_05810                                                    N/A                 LactobacillusrhamnosusMAFVELEDGSWINPAFIEEIYKRNPSDTVWEAGMNHGEATTITDADRILILKHAGFVRARKEKDNEQ
1117050..1117481                   PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; CYG41_05815; phage(gi226377668)     2.67e-64            LactobacillusrhamnosusMSNETKQDVFEKALREWDDYVHSWGLQGEEAHGGCEFDPILIKYMKDYDAALPDETEKQKNCPYCHETDPQSKHAHYGKAISDKTEYFDFVRKTKLYRRVKARIKSPEDQHPKLCVTQMNRFREVSVVLDKAINYCPICGRKL
1117475..1117840                   PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; CYG41_05820; phage(gi226377665)     2.39e-41            LactobacillusrhamnosusMMTETKRDVLEKLAECYAEVSDAYTSETGSPYYCGDEPNYLEEYGTSLPDNLPVIPKAVGDVIVKLKHKKFSLSGAMSYAAVVSLSPWMTFEHEDTFALAWVLGVWRVEKTGEIVKLEAEK
1117837..1118076                   hypothetical protein; CYG41_05825                                                    N/A                 LactobacillusrhamnosusMKLVKGDIIRNPWVSDPKWRDFIFIRRGKKYVHTLRSNRGLIEDAMFDKKDVDERFTKVGHSVGFDTMLREVSGEEAEK
1118126..1118308                   PHAGE_Lactob_CL1_NC_028888: hypothetical protein; CYG41_05830; phage(gi971752682)     3.90e-23            LactobacillusrhamnosusMKISPYRFMSWLGFILALASSFLPAKYMNFGAYKTFTGLTLIAVLFALWDISDAIREKQK
1118314..1118385                   PHAGE_Lactob_PLE3_NC_031125: sliding clamp; CYG41_05835; phage(gi100053)             2.49e-07            LactobacillusrhamnosusMIAVMLLIAGASMWMWANWKRGK
1118603..1119031                   transcriptional regulator; CYG41_05840                                               N/A                 LactobacillusrhamnosusMELLSISDEKDREAVENILNKYRAERGFIKAPVNPKITSAWGDGTSASTVQRPLYAQQRLERQESARKFCEWCDSCIASMPKQSHQRLLRVRYCDGPETDTPDGDAMNILDISAATYTRRKKNALLAAAWYFGVTPRKSSEQ
1120059..1121207                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05845; phage(gi100059)      0.0                 LactobacillusrhamnosusMQWTDEQISDIRKLASEGFTRRETADKLGISYDALQGKAKRLGIEFQKPLKNEYDSDGTQSSETILKVVRGHKMTPREVLEAHGYDYTKWELVRATSNFWKQTPEATLYQSKIQIRPLVEAEQYESLMNDIITHKEPYQAKAPIFVESDRYLVIPAFDTHFNGHTFDLYAESLKRQLEIIQRGHYAKILLILGGDLAHVDNINSTTAKGTQLETTDLGETVNEMEQYFETLIEAIIKNANECEVMYAPGNHDPSVGYMFARLLKRAYSNQSNITWDISLKHYKGTMLGHNFIGATHGDKGKNNYLAKYLDEFGFMLGTAQNRELFTGHLHSEMSKDLGGFVQRQVSTRKPNDRWTDDLGVVAHKTFELVEYSDHNTTAIYYV
1121220..1121762                   PHAGE_Lactob_Lrm1_NC_011104: endonuclease; CYG41_05850; phage(gi195661251)           8.89e-135           LactobacillusrhamnosusMSEKEIWKDIEGYEGLYQVSNMGRVRSLAHKDKYGRFTNGRTLADWCNSRGYHMVTLYRDGNAKKWWVHRLVATTFIPNQNGYPAINHRDENPSNNRVENIEWCTVLYNNRYGTHGKRIAEALERPIYAITSSGHRYFFSSATKAAELLGLSRGNVSTCLHGKRKHCHGFSFEWAGDPDD
1121755..1122075                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05855; phage(gi100060)      6.53e-58            LactobacillusrhamnosusMTRVWNTDYGNMYDVEFRIIEKLSREEKHMNAIIYTKPRCQKCRRTVLKLSRVMPVQTVTADADDYERFRKLGYRSMPVVTVYKADGTHDEWCDLRVDKIKQYTEG
1122112..1122645                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05860; phage(gi100001)      1.79e-99            LactobacillusrhamnosusMRLTAKQKKFVDSYIADSNATKAALEAGYSKRTARFVGAENLTKPNIKAAIDERMKRIESDKIAKAAEVLQYFTTVLRGEAKETIIVGTPDGAESVENEPSIKDRMAAGRELLKRYPGNDELLNAQLTKIITDIEKAKADVRKSKAEADIMEAKAKLLTDTDSQDRTVIVDDVPEDD
1122623..1123978                   PHAGE_Lactob_LL_H_NC_009554: putative terminase large subunit; CYG41_05865; phage(gi148750837)     0.0                 LactobacillusrhamnosusMTSQKMIKLSKMVQPHFYPFWRSKAPYLILNGGRGSFKSSTVSLKLLMMLKRQAQQGHKANVIIIRENTINLRDSVYSQISWAIDMLKMTDEFVFNVSPMRITHRGTGSTFYFYGGDKPEKLKSNTVRNVIAVWYEEAANFKSAEVFDQTNPTFIRQKSPWVDQVQVFYTYNPPKNPYDWINEWIDSVRGDPDFFIDTSTYLDDDLGFTDEQQLKLIDKYKANDYDYYRWLYLGDVIGLGTNVYNMDLFHRLDEVPSNDPIRRLVFSIDAGHINSATTCVAAAVTAKNNLIVLDTYYYSPANQSVKKAPSDLVPEIKSFIDKVRSKYNHPVLKYTIDSAEGALRNEFVKEFGIRWHGIVKGKEADMIDFVSNLLAQGRVFYLDNDDNKIFISEHQQYQWDEKTAHSDDPHVIKEHDHTVDAFKYMVMDNAGQLKLSQANKARAFKNTSKYF
1123983..1125410                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05870; phage(gi100003)      0.0                 LactobacillusrhamnosusMAIILTVQGKGSITDGDVFIFPVDTAITGDDITNFISANDELARRKYLPAKKMYLGKHKILHEDAKDHGPDNRLVGNLAHYIVDTYNGFYIGIPPKITLDNTQDNTALQEWNDTNSVQDKLSEISKQAAIYGRALAFLYQDEDSNTCIAYSSPINSFIVYDDTVAHKAIAFVMYWHDEDNNLTGKVYLKDGIYSLDMVRFEGTAGFNPFSEIPAVEFFMNTERQGIFENVETLIDALDKVLSQKANQNEYFDNAYLVIRGMSLPEDDDGNPKLDLNGNQIIYSPDADSTNGVAEFLTKPDGDAIQEHLIDRLISMIYQISMVANLNDEAFSGNSSGVALQYKLLPMRNLAANQDRKFTQSLRSLYKIAFSVGTILPESKADEWQKLNFAFSRNLPENITDEADAASKLKGLVSDQTMLSTLSFVDDPKAEMKRIADETAKKAKDAAANSPSSPDFQKLLNGGGNDDNNDSTTDSE
1125376..1126368                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05875; phage(gi100004)      0.0                 LactobacillusrhamnosusMTTTTQQQIASNSAYWNKRTAAERKWIAENLKNDEAFNARIQEYFDKALSNIQKDIDSEFAKYAAYSNDSMAGARQAVMATDIKAYQAEAKRIVDDARKMYNGEPLKYSDFSKDVNDRLKLYNATMRINRLEMLKSEIGQEMLDAHMKVNVDLISKLSDDYQSEIKRQAGILGETVSKGGYTDLAKLLSKREGDYTFSQRIWINQDILKAELDELLTSATIQGQSPLKIARKLRGQVAETVNNHRYVTERIVRTESARIQTQAQLDSFHKFDYQYCKWVAEPSACDVCKEISEGGRTGEGIYRVDDVPDIPVHPNCRCSIAAYAPSDEAE
1126493..1127149                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05880; phage(gi100005)      6.33e-88            LactobacillusrhamnosusMIPKILMPMNLQFFAEDNPQGDPKDPVDPPKPKDGDPVDPPEGKKQGEPADPDPDGKHVYTDEQVNEIVKKRLARAEKEKQAAVDEAAKLAKMNADQKKDYELQKAQKERDELKSQLATYEMGKQARSMFEDAKLSVTEDDLKHVVTPEAESTETNVKWLIAHDQAVAERVRQELLKGSTPLDPSSNRKTKSLKDMTLLERSELQRKDPEMYKKLLTK
1127165..1128178                   PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; CYG41_05885; phage(gi23455804)     1.49e-60            LactobacillusrhamnosusMPEFSGATAKLNLVEPKVFADYVLEQQTATNRLLSSGILTTDPIIQAQLLKGGTYVTIPTLQSLSGEAQTWNDTSDITVGNVDSYSAIAPQMYQAKAFGYTDFGQLSTGAPVAEQIAGQFASFWNIQDNKLLIAVLKNAFLNADLQAVKAYGMGTPAPLAAGDFIAALSRMGDVASPQLTKIVLNSAAVGAMRDQNLIDTIQPSNGGTPISYYNGIEIVEDDALPVAADGTTDAFIIANGAVSYGLANPENSYEVKRDSLGNGGQTAVINRRTLAMQIAGTSFTDVTKVAGLGYSAINASETSMYDLVGDPRNIGIVDYRFTIDKKFVVAGINAPKA
1128406..1128780                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05890; phage(gi100010)      1.22e-81            LactobacillusrhamnosusMADTDPVTLADLKTMMEIKTDTQDDVLTLIIKNTTQALRFKLGLRTDEAFPSELAYIALEVCVRRYNRRKNEGMTSYEQEGQSFTFKSNDFDDFADDISDWKEANGKNAKSLGTVSFISGYPKR
1128785..1129087                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05895; phage(gi100011)      1.64e-65            LactobacillusrhamnosusMRLDHEVTFWLDDEEYNPQTHQYGDVKKVATAVASVTDMGTDKSAQLFGNYAQKAKVIRLVEPITVNWSYLTIDDEATHYALNTDRVPLQNATLIVGETK
1129084..1129449                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05900; phage(gi100012)      2.48e-81            LactobacillusrhamnosusMSKASISYNMEIKGMDKLVAGLLSRAKMDVVKQIVKQQAAQLQTRAQQMTGTVYAHPTGATKRGIKLSLEDGGLTGIVGMSMEYNPYTENGTRFMRARPVLKPAFLYQKVQFINQLKQAAK
1129450..1129854                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05905; phage(gi100013)      1.04e-94            LactobacillusrhamnosusMIQITSPEQELYDYFYAFSQSSGYKTYDHLPMQQENAPYPFVIVGDIQVVPIATKTSLNGNVLITIDIWGDKKQRFTVSDMAERFFRAAIGQVLTDDYRFYGRVEDQSKEFTQDQSVPDTVLNRATLILNLNIL
1129866..1130468                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05910; phage(gi100014)      2.64e-124           LactobacillusrhamnosusMANELKVLEGMDVVALARKHSDQATVSGQIIPWQTSLSFDPSVDSDSTVTKDGNVATRSSASTDLEVEFLNNTAAIADVMYDSLFDGELLDFWILYRKRKNADGKYYAWYMQVTVQEDSSDNDPDDHSTRDVTFSVNGTPKRGWTTLDDETQEQVDYVFLGVGKVTDTDNTGGGTVWDKAVDPGTNTADTAPAGGTGTGA
1130555..1130887                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05915; phage(gi100015)      1.76e-56            LactobacillusrhamnosusMQLTINGKEYELNFGVRFVREMDKNMGAVMHGINFGMGVAKALAGLSAYDAAVLSDTIYSATVASKKRPSASEVDDFIDSNSDLDSLFKQVSDEMNSANAVKAVAKNMKA
1130992..1131345                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05920; phage(gi100016)      1.30e-75            LactobacillusrhamnosusMTLVEYELRMEAYQLKQVDRQNEIAQQAWMNQQVQATTGSKNPKPKFKTFDDFFDKKAAIDNVRSNYEPNYEVSQMSKTELKQKRAQVFAKRMAEFQRLKREGKIIPLSERKEGAHG
1131338..1134427                   PHAGE_Weisse_WCP30_NC_031101: hypothetical protein; CYG41_05925; phage(gi100030)     5.57e-95            LactobacillusrhamnosusMADSFSVEAILSAVDRNFSGTFKNIANSASKVGDSFEKSTKPAGNFVSTVSKIAGAIGLTKVVGAIGAGVKSMAGELDASSKAWQTFESNMKFLGKTPAEISTIEKSLQSYAQKTIYSSSDMASAYAQFASVGVKGVGRLVKGMGGLAAATDDPKQAMKTLMEQGTQMAAKPMVQWADFRLMLEQTPAGMAAVAKAMGMSTKELVENVQNGKISTQQFFDGIEKAGNSKAFQKMATSYKTVGEAMDGLQETLANKLQPAWQAMSKVAVGAISGIIDKIGGINFDSVLASIGRFFSPFSTLILNIRTQLSNLGKGESMSGLSSILQGIGSVLHTIWDLVGSLANVAFVNLIGIAQKVGDAFNSVFGGGQLSGVFDGIKQAVTDFGYAAMGAITTVSDIIANLPWKAIFEGVKAALTGVVNVLKPIAALVKAAFANDIVKSFAVAILGAVGAFKVISLAVGGLSSVIGIFSRMIGPIRGVIAVVTNFGTIAKTAGGIWKAFGLILGMNPWVLLIAGIAAVVAGLVYFFTQTKTGQKLWSGFVSWLQGAWQGLVGVAQTVWNAISGAFTSAISGIQTAWSGITGFFSNLWTGITTTASATWTAFTTTLSVIWQGAVTAATAVWNALSTFFTTLWNGIVAVATAVWSTFGGSLTTIWNGIVQVATGVWNMLKAVIMGPILIVIDLLTGNWTQLSADLQLIWNSIVSAAGQIWNGLVTYFSGIWSLIQTYAMTVWNTLVSALEGLWNGAVSAASAIWSALSSFFSGLWNGIVSTTEGVWNGIASFLSGLWSGTVSTAEGIWNALPGFFSGLWNSITSFFSSAWSNIQSIVIGAATSIFNGAKAVWSGFTGVVSGIVNGIKGAFNALRNFSLADAGRAIMDSFFKGLKAVWGKITDFVGGIASWIRKHKGPISYDAKLLIPAGSAIMNGLNAGLTDKFSNVQRNVSSMAQAIADSAAVTMPAVNTSPFDASLQSLNNSVQGATLSSNLDVNYTRKQTIEVPLYIDGREVARATANPMQTELSRMTRMSNRRKGIV
1134430..1136418                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05930; phage(gi100018)      0.0                 LactobacillusrhamnosusMYDFRETTPFTGSDDNQRPAEAMLIDGQYIEDLIPGYSTLQVSGRELLSQSIEKQTIGKSDGEFIQYVRNPSREIIVGYRLSAADNLSFRQAFYKLNDILHGDTHQVSFNDDLSVYWNAVLTDVDDVPKGRNAITSSFTLFVPDGIAHSVATQTFDNMPYKDIPLNLMAGTSADPVSVTGSGWNIQKLGSFNNPTVGKKYAATVLLGRADFAVSFQLWANDINGNRISLAGFPVTTQMGANQRSTIVCTWPDPGTTGAAQIEVTLAWAFQKTDVGTYQYLKAKLEEGTTYSTWSPNPADPEYYSDTITVHNGGTYPVEPVITATMHADNGVVAFVNDQGSVLQFGSPSEIDGVVRQKSERVYYFDFENEPNGIVMNDGALTYPNYRDNPATPNKQKGIFSYGRPDGYDNAIAYPNTERNPSNYWSGPSMSGKLAANSNGKQNGNFEWRNLIRFATMTNWAGRVEFNLTYEGKIVASLALYDQSTTDDQVMFEGKIHDGNDARMLFHEALPRDLYSRANSFAVISKMGDQLTFRIDRVGGGNVIRPFTIAGFGALPVDGWTVWFSAFSDVLEANMGWQDSYFDWVNVDYWTDVPNRFKEGDVVKIDVAKRVVSLNGAEDPTLQTVGNNWEGFQLLPGKNTIQVLQSDWAKPYTCQVEWQEAWL
1136415..1138925                   PHAGE_Lactob_Lrm1_NC_011104: host specificity protein; CYG41_05935; phage(gi195661215)     0.0                 LactobacillusrhamnosusMMDFYFTDRSWHLLGIATAGEGPIHIVNDTDDQLISAGARTYSGTILFTPETSAKVKSMAAYGNYVLYKDTRGKAVFMTIMESNHDPLLGETTFTAEDAGIDLINETVGPYKADKPMSIAEYINFFVTDSGFDIGLNEIPDLKRTLEWTGESDTALARILSVATQFDHAELEFSFQLNGTSVVQRLINIHKRIGADKRITLYVDKDINKIVTSGNIWDLYTAITPTGGTPEAKDGDTSEQKPITLAGYQWTDPDGRFVLTSDGILLDPVANQQWSRLLSGGARPDAAGAYINRVNTYEATTQASLLQSALSDLKKHNHPVVNYETDIARLPDNVDIGDTVHLADENERLYLSARLLELKSSYSMDTHTATLGDYLIETDQVAAQYRELAEKIKNIPKTVQYWPWVRYADDDKGTNMSAFPANKKYMAVVYSNKSSVPSDNPDDYAGKWALIKGADGADGVPGAKGADGRTSYFHTAWADDVSGKSGFTVSGGDGKKYIGTYSDFTQADSTNPADYNWALFKGDKGDQGPQGPQGPQGPQGVPGSKDVPYPYVQLSAPASPKKGDTWWHGTSYNDATALQYYDGSKWVDQSIQQAVLNIKKLQSIEIDSAEINSPTINVPFTHAPIEGGHILSTGKLALNGTSYTIDGTIEDTKGNPNGQRYHTELNPDGLLSYITQTDGTTKMDVSRISMGTLEFTHLASGLGNSATYISSTLDTVKVLQLANNNQMVWQGAMMPENGDVATMSVPLSQTLTGWLIAWSYFQNGVPTHNNYAFTLIPKAALVYNTTGANYLRVTLTMNEVGTTYKLLFYDDRNIVGNDENATGYPAKAVMTEVYAV
1138935..1139258                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05940; phage(gi100020)      5.96e-66            LactobacillusrhamnosusMEVDKVKAIFSTDEDGYITGYQQEFWDGTQWQTPFDDEKAIMIAPEELKKIAIGASKLADDGTVVIDTDKQAALDKAANQVTPTAEQKLLANLTLEVAQLKAAKSSD
1139251..1139382                   PHAGE_Lactob_iLp1308_NC_028911: hypothetical protein; CYG41_05945; phage(gi971754935)     1.80e-24            LactobacillusrhamnosusMTNYDQCALLYSWGIDLTPYVPVMITPDQYKQITGSNYVASKS
1139412..1139705                   PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; CYG41_05950; phage(gi195661217)     2.44e-60            LactobacillusrhamnosusMTFFGYTIGDWAEVISIIGVGVSAGSWLFKKIALDPLRSDIQVLSETINRQLKLHEQSLADLGQHLRTHDDELGSHSVRITRLEDHVGIKGEDNHED
1139695..1140108                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; CYG41_05955; phage(gi100022)      5.27e-77            LactobacillusrhamnosusMKINWTVRVLSVKFWLAVVPASLLVVQTVAAVFGYNWDFASLGKELTAVVNAVFALLTIVGVAVDPTTEGVSDSQQALAYPALITTKAAKIKALEDQIKALQADKEADQVTAASEVVPETSSAAPAESAPASFAPQQ
1140119..1141417                   PHAGE_Lactob_Lrm1_NC_011104: lysin; CYG41_05960; phage(gi195661219)                  0.0                 LactobacillusrhamnosusMKLKTKLITLVVAFLAAISFALPSQANASKGDQGVDWSRYQGDNGVFGYSTDKFGISQIGGYSGYGTYEQTTYKTQVASLIAAGKRAHTYIWWQNIDNTNLAKQVLDHFLPEIQTPKGSIVALDYEAGSTNTATLLWALDYIRDAGYTPMLYGYKSFLVNHINLSQIASRYQLWLAEYPDYNVTTVPNYNYFPSFDNVGIFQFTSTYRAGGLDGNVDLTGITDSGYNGSTTTGSGKTYVKPATSTPATKAGQQANNTTLSQIKAGDNVKVNFGTTRWANGVAMPSWVQGKTYTVQQVSGSNVLLGGIMSWINRSNVELLTTTSVPSVSYGSTYTVQSGDSWWSIAYKYGMSMYTLASNNGKSIYSVIHPGDVLRVSGGYSVAVSSHTYYTVRYGDSFWSIASKYGISMYTLAANNGKSIYSLIYPGESLYIR
1141708..1141745                   attR                                                                                 N/A                 TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT
complement(1142037..1142324)       antibiotic biosynthesis monooxygenase; CYG41_05965                                   N/A                 LactobacillusrhamnosusMKIINVTLHVKPELASDYQQFISQLVAGSRAEAGNLSYDHFQSLTDPDKYEIIEHWQDAEAVAAHNETSHFKQFLAGIDSFLDAPLEIIRMDYSA
complement(1142620..1143471)       PHAGE_Strept_315.3_NC_004586: putative mitogenic factor; CYG41_05970; phage(gi28876265)     2.19e-13            LactobacillusrhamnosusMKTKLMKYLTPVLIVSLLLTGCSTQGTSKSTSPSTDPVADQTKLNNKTNSAISSLDEAIADKREEVSSLKATLDNSKPSTEASKTTAGTTDANTLANLDYTGQQEITVNNNDPAFSKNDLSTAKGAWAAYSDLDSLNRVTDANALLNRSLMPSAKREPLTWNPTGWHNKKTAHGWLYNRSHLIGYQLTGENNNPKNLMTGTQTLNSPLMLAHEMDIAYYLKQSNDHYVRYEVKPIFRGNELVARGVQMRAQSIGDNTIHFNVYIFNVEPGYTINYADGTSTKN

#### region 2 ####
1395354..1396550                   PHAGE_Acidia_virus_NC_029316: poly-A polymerase; CYG41_07260; phage(gi1002166894)     1.30e-19            LactobacillusrhamnosusMQLDLNQPDFKAAIPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRTVDTGIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHDGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLGFHIEATTKAAIAANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAYAPKLAPHQAALQQFSELPNQAFTSIASGWTALIFMLKVAPESFLPAWKQSNDLMGLVDQAVTLLRKMPTPTAWDLYSAGSAAVAVVSEVAALMDHQFVPASLTTAYEALPIHSKKTLALTGRDLIQAGVRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEMSREPS
1396675..1397130                   PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; CYG41_07265; phage(gi981220948)     7.51e-05            LactobacillusrhamnosusMAEHVFEQLVFHFRNGDEWTVQHDELADVWISRVTTSYGRIHGGQIQEIHPCKSFKVEILPEADHVKSSDINTGSLEMGMFGRATKYQDIEKMDLVFDDQTKKQVQIYFPFKQKDPSGLDNEYQTSKLAKNGHLYIVIDAQHTVDDEYPRI
1397279..1399192                   PHAGE_Bacill_G_NC_023719: gp245; CYG41_07270; phage(gi593777701)                     2.45e-12            LactobacillusrhamnosusMQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGTGKTTLIRSLAGMESVDAGTIKTPKQYRISYLAQIPELDPDLPIMDAIYHGDSPVFQAIRQYERALAAYTKDPLNQAKTDAYTKADAKMTQEDAWSAETDIKTILTQLHIGDLTARVGSLSGGQQKRVGLAQVLIESPDLLLLDEPTNHLDFDSIAWLENYLSHYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNYQAYVAKKAEQLEAEKSAGHKQAQLYRQELAWMHAGAQARSTKQQARINRFKALQKAKDEAPAPDQQLDPIQIASTRLGKKVIEMHDASLRFDQQVILNHFDWLVQPNTRIGITGQNGAGKSTLLNIIAGKQALDSGTIELGETVRLGYYTQLNTNLDPKKRIITYLQEVGEEVVQADGQRVSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLTVLEDYLDHFSGTVITVSHDRYFLDKVADQLLIFDGNGRIERAVGEFSDYLAKQKPQSAASKTDSASAKPKAPAKKAAPKQKSKLTYAEQIEYDKLQQELDELDEQLAKVKAEMAQVNGEDYVKLGDLQAQLDAINQDIDQKFDRFAELDQYVSSSER
1398629..1398641                   attL                                                                                 N/A                 CGCCTATATTTAC
1399209..1400159                   PHAGE_Staphy_SPbeta_like_NC_029119: thymidylate synthase; CYG41_07275; phage(gi985761245)     4.86e-157           LactobacillusrhamnosusMLEQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHKNHIWDEWAFEKWVKSDEYRGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV
1400276..1400767                   PHAGE_Bacill_BCD7_NC_019515: dihydrofolate reductase; CYG41_07280; phage(gi422936066)     8.76e-27            LactobacillusrhamnosusMTAFLWAQDRDGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVLTHQEDYQAPGAVVVHDVAAVFAYAKQHPDQELVIAGGAQVFTAFRDDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA
complement(1400903..1401544)       hemolysin III; CYG41_07285                                                           N/A                 LactobacillusrhamnosusMRVSKSSHYEFNNEMFSAITHAFALGLAVTGTIALGIKGVNSGSQVELFSLIGFGVSLMLLYTASTAFHGFYFSKARHVLQVLDHSGVFILIAGSYLPYCLVAIGGKLGIGLLIAIWALCLGGIAYKLFFLNRFKHLETMIYVVLGWLCLVGMVPLWHHLGPVGFWLLVAGGVAYTGGAMLYLQKGIPYIHVIWHLFVILGSLCMYLSIYFYL
1401785..1402627                   PHAGE_Staphy_SPbeta_like_NC_029119: DegV domain-containing protein; CYG41_07290; phage(gi985761237)     6.33e-25            LactobacillusrhamnosusMANIKIVTDSSVQLTPEEISQHNITVVPLTIMIDNTVYIDGETITREDFMDEMAAAQNLPKTSQPAIGTFTDVFDKLTADGSQVLSIHMTETISGTVNSARQAAQLVKGDVTVIDSQFTDRSMAFQVLAAAEMAEAGKDMPTILDKLKQIRDHTILVLGVTNLDNLVKGGRLSRVSGLISSFLNIKVVLQMEHGELKALRKGRGMKTINNFVTETISKMAKLTDIQSIGVSTAGAKEIGEDIGRRLAEVLPNVPILVRPTDPVIATHTGPGAFAITYYTD
1402890..1403735                   lipase; CYG41_07295                                                                  N/A                 LactobacillusrhamnosusMRTLKNFFISCGVLLLACLLAFGGWQLFGPVSSPSEVKVVANTPKHLQLTALGDSLTYGVGDATNNGGFVGLTKGELEATGQYQVTTKNYGVSGNTSGQILTRVNKQPKIRADLKRANIITVTAGGNDLMHVLQKHFLTLSEKQVTAGSVAFQKRLATLLTTIRKENPTAPIYVFGIYNPFYVYFPKMTAMTNSVKAWNQATQKTLQQFDRTYYVDIDSVLSNGETAANKASAKEALKEATSGDGNPLIFSQDHFHPNNAGYGQMTKQLMKQMKATKKAWE
1403740..1404381                   DUF2140 domain-containing protein; CYG41_07300                                       N/A                 LactobacillusrhamnosusMQAKKRSLQRNAAKQKAVRTGINWWKWLFLILVGLLLGTGIWFTKTALMPVKINSTPQTTMTSKDPVFTVKVTKNSANRIMAHYLKSYLKDSKIKYAVTLGTNEAALSGSFKFLGNAVKFQLTFDPLVLKNGDVLLKAKNLNIGALPVPISFVMSYIGNSYKIPKWVSLDSKAGTVVLKLTQFKLQNGMTLKANKLDLTNDDLEFAVYLPDEE
1404407..1404925                   PHAGE_Temper_phiNIH1.1_NC_003157: putative methionine sulfoxide reductase; CYG41_07305; phage(gi16271776)     4.52e-20            LactobacillusrhamnosusMKKETAIFAGGCFWCMVEPFEEQPGILNVVSGYTGGHVANPTYEQVSSHTTGHTEAVEITFDADVIDYPSLLNIYWQQTDPTDAMGQFQDRGDNYRPVIFVKDEAQRQAAEASKAALEASGRFSDPIVTKIEAAKPFYPAEPEHQQFYAKNPRRYAMEHAQRQAFIDKNWKD
1404928..1405170                   YozE family protein; CYG41_07310                                                     N/A                 LactobacillusrhamnosusMHRTFYEYLMTLRNPNDHSEVAEFAKNAFLDQSFPKHEKDYHRLSDYLELNGNYLPTMAIFDETYRDYEASESTGGDSYQ
1405196..1406581                   PROPHAGE_Escher_MG1655: carboxy-terminal protease for penicillin-binding protein 3; CYG41_07315; phage(gi16129784)     1.85e-29            LactobacillusrhamnosusMVLFLVALGGGAAGGYALSYQQAQQSVLKTGVPKALAPVISAYETVTNNYYKQVSTTKLTDGAIKGMLSSLDDPYSVYLQNNDKTNLDDTISASFGGIGATIQQDHNSLSIASILPGTPAKKAGMKVGDVLLKVNGKDVSKKTVTQAVAKIRGKIGTTVAVTVKRGSKQATFSMKRKKITVDTVIGKLAPANKQVGVITISTFSEPTVKQFKATVKKLRKEGAKSFILDLRQNPGGMMTAALSISSMFSKNGQTVMQIEDRNGAKEVYKAGKKLDGGFKVTEKTAVLIDGNSASASEITAAALHQNSQIPLVGEKSFGKGTVQNVGEMSSNKELKLTVAKWLTPDGTWINHKGLTPDVKVAYPAAAKITLINATQLKPGDKGSDVKSLQQMLKALKIGSATVNGQYDDATQAAVKSFQEANELDASGTADQDTLAALAQKLSAQLTKDDPMVAAAVKEVTK
1406682..1407011                   hypothetical protein; CYG41_07320                                                    N/A                 LactobacillusrhamnosusMIELEGFAVYPNKVERAKEWMSFLKGHQEAVNETLGPENIEVERIFSVSVNGRMYLCWYSEQTAPIPDVTRSTNPIDQVHVDFWKECIDEKAPRLEFKLENEFKRPGVN
1407074..1407622                   hypothetical protein; CYG41_07325                                                    N/A                 LactobacillusrhamnosusMENKGVNLTTYWKYLNTIVVLIVFFLISLIFASHTMIQTLLGVGSLAWFLFFLIREIYLNNRRTQRTRFQVRLSHGLIVLGLLLFNTSVHQTVISTFGQTDMIQFWGEHEAAIHMNGRAYHLIWTKRSFHSTTYFYNLYERRGLFFYRVNSEVMSWTINPPEQRDYGAVRTFLYHGEEQGVK
1407708..1408418                   DUF4918 domain-containing protein; CYG41_07330                                       N/A                 LactobacillusrhamnosusMNEQANFATKVLTLHQRLASVKMTLPGCYQLVNPYSGKQKHAVDQITAAFYHKYFNDNHKRRLILGSSPARKGTAITGVPFEDAAELQAETGIAVAKFQIKPSSTNFLYDVMQQYGGKRKFYSDFYMSFACPLGLSKISAKGNVINSNYYETNVIKDRLMPFIVASLQEQIKLGVDTSVCYCIGSGENFKVLTSINQTYHFFGSIVPLEHPRYVMQYHFKDRARYIQKYVAALNCK
1408433..1409293                   ribosome biogenesis GTPase YlqF; CYG41_07335                                         N/A                 LactobacillusrhamnosusMLAIQWFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKPRLIILNKQDLADPVLTNEWVRYYQTQGFAAIAIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRKNIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLNYFMAHYPAALKKAYHLTDTDLQAAPHDVLVKLTKTQGFGEEFNRMAERLIFDARQGKLGRFTLEKPGELDADAE
1409277..1410035                   ribonuclease HII; CYG41_07340                                                        N/A                 LactobacillusrhamnosusMPTLSEYKTLLQADHVDPAVLTALEQDSRIGARKLLAAYQRRQDHQAAEAVALRYRSRYERKLWKMYSHVAGLDEVGRGPLAGPVVTAAVILPHQFKWPVNDSKQLTAHERDVLYPHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLPQERLIKGDANSISIAAASIVAKVIRDRLMVMYDRVYPGYDFKDNMGYGTKAHLAGLATHGVTPIHRRSFGPVRHCLKS
1410083..1410898                   PHAGE_Thermu_OH2_NC_021784: SMF family protein; CYG41_07345; phage(gi526118339)      3.30e-29            LactobacillusrhamnosusMTLRDFLLAWHLATHQNPRLAVSLQQAILKKADLSTYQNDLKQKLTPAVARILSAARETPYLTFVDTAYPPRLREIPQPPSVLFYQGNLGLINQLTLGVVGSRKATNYSAEALTRLFPQLPPMTIVSGLAAGADSMAHEAALAAGLPTIAVIANGIDQVYPAKNRSLQRQISRVGLVVSEYPPGTAPQRFQFVARNRIIAGLAHGVMVTEAEIKSGSLITANYALQHNREVFALPNRFGDVLGAGTNALIQAGAAIVTGPETLMENLHFYP
1411144..1413228                   type I DNA topoisomerase; CYG41_07350                                                N/A                 LactobacillusrhamnosusMADKKLVIVESPAKAKTIEKYLGRTYKVVASLGHIRDLPKSQMGVDVENNYKPKYISIRGKGDVIKSLKKDAKKASRVYLAADPDREGEAIAWHVSHILGLDPNAKNRVVFNEITKDAVKNAFKTPRGIDMDLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSVALKLIIDRENEIKNFIPEEYWSLDAEFQKGRSKKFSASFYGIKNKKMALKNNEAVQKVLSQIDKTKPFSVTNVVKKERKRFPAPPFTTSTLQQEANRKLGFRTRKTMMLAQQLYEGINLGGKLGTVGLITYMRTDSTRVSNVAKTETSHYLHEKYGEAYAAVKIRQGKLQEGAQDAHEAIRPTSTLRTPESLASVLDKDQMKLYRLIWSRFVASEMTPAIIDTVAVTLNQNDVTFRANGSQMKFEGFTKLYVSSRDSDEKDNVLPPLAVGDAVKMLKTDPAQHFTQPPARYSEANLVKALEENGVGRPSTYAPTIETIQKRYYVKLNARRFEPTELGEIVNSLIVEFFPDIVNIKFTANIESELDSIETGEANWVKVIDQFYKPFEKEVAHAETGIEKIQIKDEPAGFNCDICGAPMVIKMGRYGKFYACSRFPDCRNTKAIVKEIGVICPKCHKGQVVERKSKRNRVFYGCSRYPDCDFVSWDKPVGRDCPVCGHFLVEKKSKAGTQVVCPNNDYKEALQKA
1413398..1414717                   FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO; CYG41_07355     N/A                 LactobacillusrhamnosusMPTVNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTGNFAELVCTNSLRANQITNAVGLLKEEMRRLHSIIMQSADATAVPAGGALAVDREPFSELVTRQLTNHPHIHVIHDVLTDFPAGITVVATGPLTAPGLADAIVALNGEAGLSFFDAAAPIIDASTIDNDIVYKKSRYDRGEAAYLNCPMNKEEFQAFYKALVTAEVAEGHDFEKMTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDPKTGKTPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRGDLFFAGQMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQTTAMGAMAHYITHTSPSHFQPMNANFGIMPPLAVKVRNKKERNQQLAERALNDLATFQTELQGAHQS
1414833..1414845                   attR                                                                                 N/A                 CGCCTATATTTAC
1414918..1415814                   PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; CYG41_07360; phage(gi157265299)     5.28e-20            LactobacillusrhamnosusMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQLIKQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPKHN

#### region 3 ####
1527567..1527646                   attL                                                                                 N/A                 CACCATCAGGCTTACACTATCCCTGACTCGCTTGGGTTTGGTACAAATGCGACCCTTTTTCTCATCACCGATTCAATTTC
complement(1527792..1528961)       PROPHAGE_Oceano_HTE831: integrase; CYG41_07880; phage(gi23097608)                    6.94e-54            LactobacillusrhamnosusMASIRSYKLDSGKRRWKVSVYVGIDPKTGRKKYVVKGGKLTRQDAIKAGRNLEKAVQNGELTVAPNPVKVARKFKDVYEEWLKSYKLTVRESSWSKTRDCFNLHILPDLGDMYIDKITPQDVQTAVNKWFKQSPVAFKRYFVHINRILTYAELRDYITHNPARRIILPRVQDKIGSTNDFWDRRQLEVFFNCINPDRELYKYVLFRILAYAGLRIGEAMALEWEDIDFKKRLISVNKTVSLGVHGKLIVNPPKTRASRRDVPVDSETINWLKRWRIEQPDYVYGYVRLSTHHQLLFTTKTGNRFRVDKPRMWLSTIIRNNNLAPVISLHKFRKSYISNLLIAGVAVSTVQKMVGHTDPRITLQIYARVHQEQEVEAAEKLAEYLKTGKK
complement(1529004..1529330)       XRE family transcriptional regulator; CYG41_07885                                    N/A                 LactobacillusrhamnosusMVMTAKEVHQGRIDRGLTQGELAKEVGLSVGSINSYEHGTRSITKAAESKISLAFKRIKPLNEQPAQATLLAELSDANTRFQWEGTLLRPTEVELIKVIAKTLVDQRK
1529437..1529619                   hypothetical protein; CYG41_07890                                                    N/A                 LactobacillusrhamnosusMWLFYIVREVRIIVYFVSWLIMHQITLAALCFATLAGIFIGALIQFLEDNKKATPHANAK
complement(1530166..1530552)       hypothetical protein; CYG41_07895                                                    N/A                 LactobacillusrhamnosusMEKLKLNRGMGQLVSPHGYALDATKKYVINLEKESEEQISILEAARMFDLPAILDWHKWLKDNGFDIAPTNDYVSKFFGKEPLWISEKSQGIVVMAENDDDYYVVLECSRQNEGFKYTQIIVTLGGCF
complement(1530743..1531897)       PHAGE_Lactob_phiAT3_NC_005893: putative lysin protein; CYG41_07900; phage(gi48697278)     0.0                 LactobacillusrhamnosusMQFKTKLVLTGVAIMAAFSFALPTHVKAAKNDIGVDWSVYQGNKGKTVECDRFAISQIGGTQGGTIYNQSTYSSQIKAANDDGLRVHSYLWYGVGGSSDIGRQALDYFLPRIQTPKGSIVALDYEDGASESVEANTDAIIYGMQRIAQAGYTPMLYSYKPYIVAHVDYNRVLSQFPNSIWVAGYPDYQIRVLPLYSYFPSLPGVAIWQFTSMHAVGGLDGNVDLLGITDNGYSKQPAQATTVPSTPSQVTSSDTDYAQNGIFRPSVTLNIRTGDDTSYASIGTYAPGESLMYDHVYIHNGYVWARYLSYSGRYHYICLGVMGGESYGSRSSNYSAPSHTYYTVRSGDSFWSIASKYGVNMYTLAANNGKSIYSLIYPGESLYIR
complement(1531900..1532232)       PHAGE_Lactob_phiAT3_NC_005893: putative holin protein; CYG41_07905; phage(gi48697277)     2.18e-43            LactobacillusrhamnosusMKDLIVQIAIAVIPILGAWVAKVLLANKQALTLVQVLEPLAQAAVTAAEQLGVTQAITGAVKKSQAVASVETQLKAMGFTKVDQQTIENAVEKAYSDLKNTIEATYPKGA
complement(1532245..1532478)       PHAGE_Lactob_Sha1_NC_019489: phage-related holin; CYG41_07910; phage(gi418489822)     3.76e-07            LactobacillusrhamnosusMDEQTKMLMEIKEDIAQIKQQLTGLPSTDDKADKAYNASQDNARDISSLKKMVWSIWGVLGGTIGVTLFVYIIEKFL
complement(1532503..1532634)       PHAGE_Lactob_iLp1308_NC_028911: hypothetical protein; CYG41_07915; phage(gi971754935)     3.05e-23            LactobacillusrhamnosusMTNYDQCALLYSWGIDLTPYVPVMITPDQYKQITGKDYVGGKS
complement(1532627..1532950)       PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; CYG41_07920; phage(gi195661216)     2.06e-70            LactobacillusrhamnosusMEVDKVKAIFSTDEDGYITGYQQEFWDGTQWQTPFDDEKAILIAPEELKKIAIGASKLADDGTVVIDTDKQAALDKAANQVTPTAEQKLLANLTLEVAQLKAAKSSD
complement(1532960..1535893)       PHAGE_Lactob_Lrm1_NC_011104: host specificity protein; CYG41_07925; phage(gi195661215)     0.0                 LactobacillusrhamnosusMQWFILSRDQHVLCAPSTDARNSLPIYNDTEDIVLTNNVALSSYTFTVDNTHPDAKKLAVGGYIAYINKYGQTKLCTLIAHDGDDYIQTWNAADIGMDLINEQADKVTYKEAHDFAYYANELLADTGWTLGVNEITTLTRTLSFDGQEDTKLKRIGDIANEFDGAELEFVVKMDGSTITEQVVNAYKEIGNGKTQQRFVDAVNLSALKTSGTIDSLHTAMAGYGSTPTSTTDTGQEQEPITFADIAYDDGRFFSPRGDKVVYDRVAGKTWARLGAFDPQNRSATKGYLVGNYSYDTSNPNELLNRTITQLKSVNTPKESYEADVVDIKADIGDYVQIAHHNYHPPVYLSARVLEVKNHYTVPNSDTAVFGNYSLLESDLDPRIVAMINGLAKQTEKYPWVRYADDDKGTNMSALPAGKKYMAIVWSNKTSVPSDDPSDYAGKWALIKGADGADGVPGAKGADGRTSYFHTAWADDVSGKSGFTVSGGDGKKYIGTYSDFTQADSTNPADYNWALFKGDKGDQGPQGDQGLPGKPGADGRTSYAHFAYANSQDGQTDFSITDPNRKYIGFYSDFTSGDSTNPSDYNWSLIKGADGADGKDGVPGKPGADGKTPYFHIAYADSSDGRTNFSLDTPGSRKYIGSYTDFTQADSTNPALYSWQLVQGPQGETGPQGPQGPQGPQGVPGSKDVPYTYIQLGTPTSPKKGDLWWHGKTLNDATALQYYDGSKWVDQSIQQAVLNIKKLQSIEVDSAEINSPTINVPFTHAPIEGGNILSTGKLALNGTSYTIDGTIEDTKGNPNGQRYHTELNPDGLLSYITQTDGTTKMDVSRISMGTLEFTHLASGLGKSATYISSTLDTVKVLQLANNNQMVWQGAMMPENRDVATMSVPLSQTLTGWLIAWSYFQNGVPTHNNYAFTLIPKAALVYNTTGANYLRVTLTMREVGTTYKLLFYDDRHIVGNGENATGYPAKAVMTEVYAV
complement(1535899..1537956)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; CYG41_07930; phage(gi48697272)     0.0                 LactobacillusrhamnosusMKQAGIKITYAGVDITQWMYVQMVERDVGTNHVNTMQKVGISDGQMLQYMSRDVKTIVVTGIVMNDDLVPLRRSLAAAIDADEPQQLIFGDEPDKYYLAIVDSQPTFTEGFRSGTISISFVCPDGGIAHSVATQTADNTPYKDVPVNMLTDSGFESGKTPSGIVWGTSSDDDRTAEVNPAMPSYPTPFGTYMLRIENQSSDSSIDPDQYIVFPLPTPVTIKAGETWTYSYKYAAAGSATGQASDYLTTNGLSPIWGLSMGHGNRDTDGGQDTWHQFSATMTADSDITVTNYRFGFVKTYAGGGWICIDNIKLEKNDTASPWSPNPADPEYYSDTITVTNSGTVPVPVKVTSKFSSDDGFLGLTLNGRYYQVGNTKEVNGKTYDDSQMLVKTRPTIDKYILNDPSFAVIPADQGVMTQTGTVTIKPDPTNQLGITTPSDFGPNNHGPHGPSLIYKLPADSNGEVGAVNCILRMHAGLGALSLDSPSDTRQVGQICMTIYDASKNAMARILYSDMSQTTSDFTVRYDLNGTKVHEEDFSNTPGFTGHCYIRKSGSQFIFAWGGEAGGTAQTYTCEELADTKVMYVSFNFLQWADLPLPHYFGLIEWNFEKDYVDLYKDLPNYFKAGDIVTLDSSTNLLTINQYTDWDRVDIGSQPLLAPPGQSTLGIVVSPWANLPAVSTELREGWL
complement(1537957..1542123)       PHAGE_Lactob_phiAT3_NC_005893: putative minor tail protein; CYG41_07935; phage(gi48697271)     0.0                 LactobacillusrhamnosusMAQQINATMSTKIALDLLSASESVKSLTAVVRSSQNAWKAQEAEMKSAGDAVGAAQAKYDGLGKSIEAQQSKIDALKAKQAELKGNTADVAQQFLKYQQQIDGANKQLASMQAQQDRAKQAMDYQKSGLAGLQQEYTAAARANQAYVTRLEAEGNQQEANKAKMEGYKSSIANLNEQLSKQSAELDKIASASGKDSDAWRTQKTRVDETATSLAKAKSSMTGLQAEMDKANPSVFNRVKEAISGTNKQAEKTPGLLHKIVEGGLITNAITSGWQTLKGKIEEATAAGMEYEKQQDQMNAIWLTLTGNAEKGQAMVDMTNKLAVKFGQDTDLVNELNQQFYHVFDNQPKTEALTSAFLTMGDAIGLSSDRIQQVGLDFTHTLSGSIVQLGDFNQLTDAFPMMADAMLEYEKKVQHNSQLTMTDLRAQMSAGKISAQDATNVIEELGQKYSKASDNLMQTIPGMTRVIKSRIPALIGDIEKPFLTAQNPVLGAISRWSQDKNTDKEFGKLGQAMSKGLSTITSAFAKAFDLSAGPKAMDKMMDKLSDAVTKVSQSIASHAGQIKTFFTTISTTGSAMAKISWAALTSGLKVLNPLLKSLGDFADKHPKLFGDLAAGFIALNLAGKVLPIAAITGFTKSVGGMYSGLKKLANSKFADMIKTNLSKLNSSALGKGMATITIAYDAISDIKDLTKAFSKGGTVGQKFSSVGESAGTLIGGGIGAFFGGPLGAAIGATIGKVAGKWAGDAAKKFTDGWNAKKKPADSWLGGLGWDARQMTNNVVKWWDGINKSTDAAQKKQQKQQEAANKQAQKDWNGFWNDVGKGWTGFWNDVNKKNSNAQQQQQKQQDAANKQIKKDWDSFWSNASKGWNNFWSDTVKNAQNGMNSTKSGIDNANTSIHKGWDSFWSDTSKNWNGFWGNVGKNAQNGMSTVHGWISDGNSKIDSGWRSLWSGLKSFFGNIWDGIKDAAANGMNAVINVINGAISGINWVWEKFTGKDALRKLSPVHFATGGTVTQKMHLVMVNDGTGPDWKELYQLPNGQIGMSQQRNATGLLPEGTRVFNGKETKAIMNMAGVEHYDLGGVIGGVGKFFSGAWDKLEAVGDWLANPIGKVTDLIKSSISGISGGVEMFSNLASGVINKLTGSVVDWFKKELAKLQDTLGANPGGSGVQRWKPYVIQALKANGFDASDYQVAAWMRVIQRESNGNPRAINLWDSNAKAGIPSMGLVQTIGPTFNAYKFPGHNDVYNGYDDLLAGIHYMKAIYGSGSSAFARVSGPEGYANGGLITQPIHALVGEDGPETILPLTKTSRAWQLLGQAVTNINHNLGNGAVAESESSGTDDLGKKLDNIADLLTKLSFVLQVGDDQFYPKVAPKVKQYNDRRDRFNAYWKGGTV
complement(1542129..1542359)       PHAGE_Strept_YMC_2011_NC_018285: hypothetical protein; CYG41_07940; phage(gi399498730)     1.31e-05            LactobacillusrhamnosusMPAKAKINPAVKVYELENQLQDFRWMKKQAVMYFHWSMQDFDDADYFEMLEMMSAKDKKDRPVDPAIMWKQYQEKG
complement(1542337..1542687)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; CYG41_07945; phage(gi48697270)     1.76e-75            LactobacillusrhamnosusMKIKVSQLSNRVHEVKTSNRNMEKMYDLQLLMAKADDVADMEPVEIIKMQRDMLHDSIDFLTTVLGLNKQEIEKLGDLEFADTIQAVNYTFERMMGMSDEDIDLAAKKQDASKSKD
complement(1542842..1543477)       PHAGE_Lactob_phiAT3_NC_005893: putative major tail protein; CYG41_07950; phage(gi48697269)     1.34e-105           LactobacillusrhamnosusMATVGLYQIQLALVDAQQKLISGTGAGLGTDGIYTVDHKDLGAKTANITNLAGTIAKTYGNNNVQDVTVGTSEPSVALDINNLDFAIKQQIKGFVSDSKGGYTDENLKAHVALLITTQTIDRLHFVYYGFGDGIMTETAANIQTDAAAEQRVDDTLTYTALTTMAFNNQPYKIYSDIDPKFDKANMYKEVFGGYVLPASSTGSGTTTPAKQ
complement(1543478..1543858)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; CYG41_07955; phage(gi48697268)     9.58e-68            LactobacillusrhamnosusMSAVDDAVAMLSQAGIANINAVKGNNLPQELVDNLNETVVLITDAANDPAAYGDNDFWALNQEVEVQIWYSQLLDSDPETIEIAMMKAFTHQHWQVAAVRQRTLDQDTQQLFNTFYFSRTKNIGGI
complement(1543855..1544274)       PHAGE_Lactob_phiAT3_NC_005893: putative head-tail joining protein; CYG41_07960; phage(gi48697267)     6.16e-74            LactobacillusrhamnosusMDMDDALEEWLKQVSKAAELSISDQEKITKAGADVFAGKLQEATKEKHPDTKGSGGKYGHLSEDISSATGDIDKEHNGNSVAGFGNKAFVARFLNDGTKKIHGDHFVDNARDDAKDAVFAAEAEKYEAIIAKLNGGGDK
complement(1544277..1544621)       PHAGE_Lactob_phiAT3_NC_005893: putative head-tail joining protein; CYG41_07965; phage(gi48697266)     3.41e-67            LactobacillusrhamnosusMVSSFKPSDFSRTIELGSPKSHTTGAGLNITSFVPAYSLHFKQQKRTLTQQYTLVGTRLDNSITIIVRHDARNIEQKQARLDGIVYDISDISPDDSNNAIRYDYLTLIKTTKGA
complement(1544611..1544901)       hypothetical protein; CYG41_07970                                                    N/A                 LactobacillusrhamnosusMAEATIDPNKIASDLMSELNLDESELPTIISLVNTAINIINRSSDAPDSDTLTIPAIKTLTQATYYDRGLSNGMPKGLLMMLAHLQASSGGDNNGK
complement(1544973..1546901)       PHAGE_Lactob_Lv_1_NC_011801: protease-scaffold-major head protein; CYG41_07975; phage(gi219563201)     9.87e-68            LactobacillusrhamnosusMENEDIRTFDVKIRAETGLANENSNNQAENGQNMDISGVAAAFNQPSIKGDFTEYVDQNALNNVDLSQVLLLYAHDFSNILARADAGTLQTSIQPDGLHFNAQLPDTQLGHDTYTNILNGNIKGMSFGFKIAPGGDSWSVNSQGNTIHTINKIDQVFELSLTPIPAYTETSVQVQRDLAQFLSSKKEVVKMAEKPEEKEEQSVDDQKRSIEQLQQQLSDLKAQVKTKVVIDKPEEEKRDATPDMASDETTAQPTSGDLVSMIATLQAAIQSLSQQLADQQAPSQMDDDVPDDDSNVVLDEKKPEQETAETEKRDDKPAEVTAEQDVKQENKRDGAKDMSKNLTADKVEDEEVRDFKEFLKTGEIKRDSTGFDSNAGEAVLPSQVLDIMSQPKDPAQLGGYVTKVQVSAPTGKIPVLSKASAQLVSAAELADNPKLANASLTQVNYDVQTLRGSLPISLEMTQDYPNITSLLTQYINDIKDQTEQHKIGAVLQTATPVAAASIDDIKDAFNVGLSNYTDRMFVVSESFFAAIDKQKDAEGRYLLQDSITSPSGKQLFGAPLVVVADDVLGKSGDAKAFIGSVKNFVVETVKGNINLSWQRNENFEQVLLAALRADFKAADTAAGKFITYTAPVATVPTTTSGK
complement(1546901..1548001)       PHAGE_Lactoc_bIL309_NC_002668: portal protein; CYG41_07980; phage(gi13095846)        2.38e-99            LactobacillusrhamnosusMSIWNPYERMQKRSMTIPSTNLSSYIISGGQVLPNHLVDASTALNNSDLYAVTNLLSSDIASASFEVAAPFDKVINNPNNLISPFNFWQSAVVQMLLTGNAYIAITRDSNNVPMRLEMAPAAQVVVTLADSSADISYAVNWGDERGTINYPSANMLHFRLMASGSNGQQYIGISPLESIASQVNIQDYANKLTLSTIKNAINPSTVIKVAEGALSPEEKEATRKAFENANTGDNAGRPMVLDQLYDVQNLSINADVSKFLTSNDWSKTQIGKVFGVPDSYLNGQGDQQSSLDMTKSLYSNTLRRYVKPIESEMGAKFGVPVNIDESSAVDADNDLLISQIQKLLSGTTPAITPLQAQQMLAKRGVI
complement(1547998..1548180)       DUF1056 domain-containing protein; CYG41_07985                                       N/A                 LactobacillusrhamnosusMSKLIMLKELLPTVLFVSGLIAIVTSAYLFNSTIGTLVLGSVLLFCGWLLTPTSKAGGSR
complement(1548304..1550196)       PHAGE_Lactob_Lv_1_NC_011801: terminase large subunit; CYG41_07990; phage(gi219563199)     0.0                 LactobacillusrhamnosusMVDYDLTLPDWTVERAYKQQRDNGAYDKIADKYHDPMTAYAFQVLEGTTMAGQDIKLACWRHLQDLTRISSDDFPYTYDLGKCHEVLNFASICPDVDTGKPLPLMLWQKALLCSSQGWRNEKGERRFHRVQFSVARTNGKTYITNILLAYDYLIASDGMYNQDMGYIAPVVAQSKKGWRYIQLTFDRLGELTDVKRTYKTQQIKTLDDVVRSKKTRNQLLRLSHESGQFDSYHFRLAVADESGDDGRIGTIKENIGKITSGQVQVYDHQFWSISTAYPDSTSSFYLDEKLAREAMQKDYSRDLDDVLLINYSQDSEDEVDDPSSWTKSNPILELKKDTMLPSLVSERDKKKLDGTLDEFKNKNLNMWIKASDNRYLNIHDIENAVADKPPFSISGHDVYIGFDLSKLADDTAVAFIYPYQLAGETHYYIQQHSWVPLSHTGGSIAEKEKQDGINYRQAEQLGFATIAKGRFGYIDEDSVTTWIMSYIEENGLNVKFFVFDRWGTSDVLDKLSQEEPFPLMPLKQTSDKLDKPTHEFKKAIREGRVHYDDDPILKYALTNAVIVGSSAGIKVDKDRATSKIDAVDAVIDAFSRAYYAFSDFDPDADNDKNRSPLSGMSDEERHKFLMNAAF
complement(1550190..1550654)       PHAGE_Lactob_Lv_1_NC_011801: terminase small subunit; CYG41_07995; phage(gi219563198)     1.45e-32            LactobacillusrhamnosusMGRKMKITQDASDRADQRARTEELAKKTSGMEPLQVTPPRFLQGYAYTAWRELVPLLNAAGLCKQVDKPLVIALCQQIQLSRQAYEDINENGLSTGSRKNPAAAILNDATTKIKSLSDALGLSPQARASIVLDNQDDDDGPTLKQALKAGDKSW
complement(1551136..1551696)       PHAGE_Clostr_phiCD38_2_NC_015568: recombinase/resolvase; CYG41_08000; phage(gi333798162)     3.29e-48            LactobacillusrhamnosusMIYGYARVSTDGQNLSVQIQTLKQAGAIRIYSEKYTGTTMVRPVFKEMICLMQPGDKLIVTKLDRFARNTKEALEVIQRLFDKNISVMILNLGTIDNTPTGRLVFTVFSAFAQFERDMIISRTQEGKQYARAHNPHFKEGRPNTYSEDDIRKAFRLREKNLSYRRIRRITGISETTLKRRFKQIES
1552102..1552851                   glycosyltransferase family 2 protein; CYG41_08005                                    N/A                 LactobacillusrhamnosusMIGSSLQPYIYSLNIFILCMSALGLLRMFITFWFANVYDYQFIKYRYAHHRRIKRFSPSISVIVPAFNEEKAIIQTLASICRSTYKKISIVVVDDGSSDNTAILVKEFIEVHPDNDIKLIQQPNSGKSVAINNALFNYDNSVLTMVLDADSLLKEDAIEKMVKWFLNPKIVALAMNVKMLTLPTFIGACQRFEFISAYRGKCAEHVLKTLYIIGGIGSTFRTDKLKNIGGYDTNTPTEDIDLTLKLLSR
1552917..1554413                   PROPHAGE_Xantho_33913: IS1478 transposase; CYG41_08010; phage(gi77747808)            1.17e-18            LactobacillusrhamnosusMQASFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAT
1554508..1554954                   hypothetical protein; CYG41_08015                                                    N/A                 LactobacillusrhamnosusMIKQRYRWKYGRFIAFVKYHNLFFNMDKKFSKMLTFFQLPLAVFQELFMLVEPFVYLYLLFVTIYFQDLGMFIAMVSYVFVVISLSVTASRESLKSKLLLLCTAPFNFFLSYILTIVEYVSLINSILHLHSIVDYNNNHANWSHVERL
complement(1555070..1555348)       hypothetical protein; CYG41_08020                                                    N/A                 LactobacillusrhamnosusMDNDFEKDVEYVAPGYQPMGQILTPETVIESSEDLLEYRQIINDRLMTRGCDTGLITIQLADLNNEAISQLTDEVKDAGWQVVMEDKNLYIQ
complement(1555341..1555781)       PHAGE_Lactob_Lv_1_NC_011801: HNH nuclease; CYG41_08025; phage(gi219563244)           2.42e-31            LactobacillusrhamnosusMHEQSWQAKKADYRRSKLAMAIKANKSKEYDKKQRDPKAVAFYHSKQWQAVRDYVYARDLATCQVCGNVVQDRKIVDHIICRRLCSSKQALDSGNLWTLCYKCHFRKTKLEQLIADKPNGDTILKHLNKQWWTKVLKEKKEDKQNG
complement(1555880..1556284)       PHAGE_Lactob_phiAQ113_NC_019782: single-strand DNA binding protein; CYG41_08030; phage(gi446730277)     4.82e-21            LactobacillusrhamnosusMNSVNLVGNVANSVKSGNNSATAMLAIHRIYSQAKDKQTADFVPIVAFGKMAEVLSNYASKGTRIGISGRIRTGQYERDGKTEYTWQVVAEHIYLLSSKPHNDASKDSSANLSDDLINSLSPKLSGLKDSDLPF
complement(1556271..1557038)       hypothetical protein; CYG41_08035                                                    N/A                 LactobacillusrhamnosusMLSEKTIKELISTPAFLSNASKLAGMLHMSRQDASQELLIELLSHRLHKWSDKDVEIAIAAESPSLKWKVKYARKDLVRKQAKSASREVEKAQMVAHMTRQASNEAETLEALERLQELFKNKATKSWAESLLRVAQKETMVRFHQTPRQFNNKLVKVCKYARQRQPKQSNSHTKELKLLKEWDDLITDPDTSDSDVQAFIGEHEEYIDNIIDDPQVAFQGHLIKDFAHAGKDKYILVNLMAKREQELKEKSNELS
complement(1557039..1557245)       hypothetical protein; CYG41_08040                                                    N/A                 LactobacillusrhamnosusMKNKENVTLDTFSILNSAGWFLTIANIAGITQLSWANILNYWLALLGIAVTMGIVTAIIGLRTKGGEK
complement(1557306..1557908)       PHAGE_Bacill_CampHawk_NC_022761: HNH homing nuclease; CYG41_08045; phage(gi557478907)     2.97e-17            LactobacillusrhamnosusMKVGIITMTSTVNKESNLEFFIKATLKARIKAHDEEEFKQCKPPYSRYKISRNGVVIGPRSNRPIKQYINNSNYVVVGVTKDGSNKHTTVTLSHLLGLAWIPNPENLSDVDHIDDNRLNNALYNLRWVSHRDNLVKEHRRQLMKRANGRPVRKVNDDSSFEVYSSIKEAAEAVGLSNTSVAGSANGTLHLNKPYHFVFAR
1562179..1562258                   attR                                                                                 N/A                 CACCATCAGGCTTACACTATCCCTGACTCGCTTGGGTTTGGTACAAATGCGACCCTTTTTCTCATCACCGATTCAATTTC

#### region 4 ####
complement(2036656..2038032)       PHAGE_Oenoco_phiS13_NC_023560: hypothetical protein; CYG41_10390; phage(gi589286272)     6.63e-13            LactobacillusrhamnosusMIKKIWSKVSRDSRYSALGIAFLVLLVEHIFMREYVGDAIAVFSHLIDHSSLLSVLYWRYSSWTSRVLIEAPLIRLSSGMHTTTWAVIDTLMWMLLIWSLMALTHYKHNYLVISLVFIYPIIQMQSAGWMATTINYLWPLAMGSYAMVLLDRIYNQKKVGVVPALLALFALAFATNFETFGIMYLCLLTYFSLAMCYFRRFTILGFIFTVLQYAISIANIVFALYSPGNKLRLVTETKDNMLDFSGLTVVDKFVIGVNHAFSEMTDNSFLFLCFAFMIFLVAVTSQRRSKVLVATGIVPLAFVLTRTILKPIVIIYSPKFDQLFNDVADQARVGATNYFNFTSYVPFVLYSLIFAAVLIVLLNAFEKLSTGLFLDVVLISGLLTAVAVGFSPTVYASGPRTLLFLNFSFIYIIVRIYTEQYKYISPKKLLNVFLRWGTAVTAVFFVISNLISIGLTQG
complement(2038274..2039650)       PHAGE_Oenoco_phiS11_NC_023571: hypothetical protein; CYG41_10395; phage(gi589286659)     9.70e-12            LactobacillusrhamnosusMIRRIGAKIRDNSQLQCLSIAFFVVTLQHLFIREYTGDAATAFSHYLDRTTLLATLHWRYTTWTSRIFIESVLLKLSQNMHIKVWIIIDILMWMLLLWSLMKLTRGRHNYLIMSLVLMIPLSLMNGAGWMATSINYFWPAALGTFALVSLYKIYYHEKANIVTGLVTLLGLAFATNFETYGVMYLCILSFFAVAMILKRRVSTLGVLFTASQYLICIANVGLALIAPGNKARVLVETKFRMLDFANLGPFDKLVMGYTHTFSELTDKNFFFFLFTIMLVVIALFLKSKSRRILVAAFIPFSFVLARTIIAPIAKVYLPEFSALFKDAAEQQRIDALNYFNVMYYIPFLLYVVLLISILLVLCNAFKNFNFGIFLTVVFVSGLLTTVAVGFSPSMYVSGPRTFLFLDIILIYIITIMYEKSKPFISQNMYLNFIAKWGLIAFTVFSVINNFIAIGISYS
complement(2039647..2040162)       hypothetical protein; CYG41_10400                                                    N/A                 LactobacillusrhamnosusMTDSFKRKVISWLIIGTGLLVALVCVVVQYRSHAVPKVEPVTKFSIMPKKRVKYSIETLGLKNRDYTEISGWIFVKGQEPQKFVTSLVLYTKDSKEVQIFPLKMEDRNDVAKMRGKAGVYNYMNSGFHGYIPIKYMTNEKEKKYKIGFLVANKQQTDLVKTGIDYKVGGVK
complement(2040427..2041269)       PHAGE_Entero_phi92_NC_023693: Phi92_gp064; CYG41_10405; phage(gi726646997)           1.26e-43            LactobacillusrhamnosusMKILITGAQGQLGTELRHLLDARGITYRATDAKDLDITDEAAVNQYFADYQPDVVYHCAAYTAVDKAEDEAKALNQLVNVDGTRNLAKAAAKVDATLVYISTDYVFDGDSKEIYTVDDQPAPRNEYGRAKYEGEQQVQKYLKKYYIIRTSWVFGEYGHNFVYTMLNLAKTHKELTVVDDQYGRPSWTKTLAEFMTFAVDQHLDYGIYHLSNDNSCNWYEFASAILADKDVTVKPVSSAEYPQKAWRPRHSILDLSKTKATGFEIPTWQDALKDFLKIVDK
complement(2041329..2042354)       PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; CYG41_10410; phage(gi100279)     6.53e-45            LactobacillusrhamnosusMKLMITGGAGFIGSNFVHFVYKNHPDVQIMVLDKLTYAGNKANIEDVLGDRVKLVVGDIADKELVDKLMGQVDTVVNFAAESHNDNSLINPDPFLHSNVIGTYTLLEAARKYDVRFHHISTDEVYGDLPLREDLPGHGEGPGEKFTINSRYNPSSPYSSTKAASDMLVHAWARSFGVRATISNCSNNYGPYQHIEKFIPRQITNILNGIKPKLYGTGKNVRDWIHTNDHSSAIWDILTKGKIGETYLIGANGEQDNKTVLELILKLMGKPTDYYDQVKDRPGHDMRYAIDASKTREELGWKPQYTDFEEGLADTIKWYTDHRSWWQDEKSAVEAKYKQNGQ
complement(2042357..2042929)       PHAGE_Entero_phi92_NC_023693: Phi92_gp065; CYG41_10415; phage(gi726646998)           2.66e-44            LactobacillusrhamnosusMSLKVIPTKLKDVKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHLIMSEKDQHHPQLKDAENNFVYGEI
complement(2042943..2043815)       PHAGE_Entero_phi92_NC_023693: Phi92_gp066; CYG41_10420; phage(gi726646999)           7.81e-125           LactobacillusrhamnosusMKGIILAGGSGTRLYPITEAISKQLVPVYDKPMIYYPLSTMMLAGIRDILVISTPRDIDRFQDLLKDGKQLGLNISYKIQEKPNGLAEAFIVGADFIGDDSVCLILGDNIFYGSGLSKLVQRSAAKTTGATVFGYQVNDPERFGVVAFDEQHHVQSIVEKPEHPESNFAVTGMYFYDNQVVDIAKNLKPSPRGELEITDVNKAYLERGQLDVELLGRGFAWLDTGTHESLHEAASFIETVQKRQNLKIACLEEVAYRMGYIDRDQLRKLAQPLKKNDYGQYILRLADEEA
complement(2044182..2044631)       Lyzozyme M1 (1,4-beta-N-acetylmuramidase); CYG41_10425                               N/A                 LactobacillusrhamnosusMYASGPFFTSVATAVGNTNAKALNGQHFTAFEEDKTAKGTFVKVKLNDGSVYWTDKRALAIDKYDKILSDKKVDYSGVINQSSSADGLYVSGPFFTSVATAVGNTNAKALNGQHFTALEEKRTAKGTFVQIKLANGSLYWIDKRALDIA
complement(2044650..2045903)       PHAGE_Lactob_c5_NC_019449: putative endolysin; CYG41_10430; phage(gi418488198)       6.23e-23            LactobacillusrhamnosusMKNFTIGDSSVPRNDVVDVSDWQSWMTQNDYTQLHNLGIKGVVVKVTEGTYYTNGIAANQIKFARNAGMVVSAYHYATFDSASAAVAEANYFANRLDSLNVGKNVTVVADIESDAVSGDIAGNLKAFWQTMTQRGYQNHVAYTMRYYKHLDALTSTTGKDRTWIAQYPYTPSANSLWDQDFGAWQFSSTGHLPGHSQNLDVSIDYQGLFTRENGAASTSTAPSSVSYDPIVSQKTVSYSGSLDQSVRADGLYASAPFYTSAATSVGNTAAKAYNGAHFTALQEETTAKGTFVQIRFNNGSVYWIDKRALAIEQYDTVTSKTPVSYTGSLDQNSRADGLYTAGPFFTSVATAIGNTNAKALNGQHFTALEEDTTAKGTFVEIKLNDGKIYWVDKRALAIDRYDKVISTTAVSYTGSFD
complement(2045940..2046143)       hypothetical protein; CYG41_10435                                                    N/A                 LactobacillusrhamnosusMKKGALWTSAAIASSFLCSTLILGTPTFAAENSGATISAQSSLNESQMSGGMQKSVLDAGNNTTTTG
complement(2046203..2047699)       PROPHAGE_Xantho_33913: IS1478 transposase; CYG41_10440; phage(gi77747808)            1.16e-18            LactobacillusrhamnosusMQPLFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAA

#### region 5 ####
complement(2083099..2085249)       PHAGE_Klebsi_K64_1_NC_027399: hypothetical protein; CYG41_10595; phage(gi849122351)     9.97e-143           LactobacillusrhamnosusMANFNDPFFNHDMDDVFNQMLQGMGKGESARYVVNGHEMTPDEFAQYRATGQLPKQGDEIPVETTGEQAVKKGGILEKLGRNLTQEAKDGLLDPVIGRDHEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQAIVKGNVPESIKDKQIWSIDLSNLEAGTQYRGSFEEKIQNLIKEVKAAGNVLLFFDEIHQILGAGATGGEESGGKGLADIIKPALSRGEITVIGATTQDEYRNTIMKDSALARRFNDVTINEPSAADTVKILEGVKKLYEQHHHVQLPENVLKAAVDYSIQYIPQRSLPDKAIDLIDMTAAHLASKHPIVDKVELEKQIKDLNAQKDAAAKAEDFEKAANLKKEIADKQHQLEGTNNEKPVVATPNDVAAAVERLTGIPVSKLGASDIERLKGIGKRLKGKVIGQDEAVDMVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYSDRTAVSKLIGTSAGYVGYNDNKNTLTEQVRRNPYSIVLLDEIEKADPQVLTLLLQVLDDGRLTDGQGNVVDFKNTVIIATSNAGFGNEALTGEKEKDEDLMKRLAPYFRPEFLNRFNGIVEFSHLTKNDLGKIVDLMLEDVNKTLAKKGITLTVTDAAKDWLIAQGYDEAMGARPLRRVIERNIRDKVTDFYLDHLKAKKLQADLIDGAIIVSEVQPASDKPKKEASGAK
2085314..2085457                   Malolactic regulator; CYG41_10600                                                    N/A                 LactobacillusrhamnosusMHKILLLSTRSQGQKPACKGLGCTGQNPTSTSKATYTPVSKRPCSRS
complement(2085640..2086404)       tyrosine protein phosphatase; CYG41_10605                                            N/A                 LactobacillusrhamnosusMIDVHCHMLPGIDDGSKDLTTSLELAQAAVADGITHALMTPHHMNGRYTNHAADVIRMTDEFQDELDRRNIPLTVFPCQEVRINGQLLEAIDHNDILTCDVSGHYVLIEFPSDDVPLYTQNMLFEVMQRGMIPVIVHPERNTRLMKHPGLLYQMVERGAFAQVTASSYVGTFGKKVQQFSEDIIDAGLAHVFASDAHHLPGRSYEMSAAFKRLTRKRGEKKARIFEENARALVNGDPLVRFNERKVEKRLLSRY
2086561..2087454                   transcriptional regulator; CYG41_10610                                               N/A                 LactobacillusrhamnosusMKKILVRVLLVVLVAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTTSKKPVAYLLLGTDTGELGRSYKGRTDTMIVMVLNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSDTAMEAVEKLLNIKLDGYLLVNMKGLEQMVDAVGGVTVTSPLSFDYEGKSFVKGQSYNLSGSDALKFSRMRYDDPQGDYGRQMRQQLILTSVIGKLKKNPTTVLSQSFLDAVGKNVRTDVSLGSVKNLAMDYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDSELTRVHDVIQNALNAK
complement(2087553..2088578)       PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; CYG41_10615; phage(gi100279)     1.59e-44            LactobacillusrhamnosusMKLMITGGAGFIGSNFVHFVYQHHPDVQIMVLDKLTYAGNKANIEDVLGDRVKLVVGDIADKELVDQLMGQVDTVVNFAAESHNDNSLINPDPFLHSNVIGTYTLLEAARKYDVRFHHISTDEVYGDLPLREDLPGHGEGPGEKFTINSRYNPSSPYSSTKAASDMLVHAWARSFGVRATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLYGTGKNVRDWIHTNDHSSAIWDILTKGKIGETYLIGANGEQDNKTVLELILKLMGKPTDYYDQVKDRPGHDMRYAIDASKTREELGWKPQYTDFEEGLADTIKWYTDHRSWWQDEKSAVEAKYKKNSQ
complement(2088581..2089153)       PHAGE_Entero_phi92_NC_023693: Phi92_gp065; CYG41_10620; phage(gi726646998)           2.58e-44            LactobacillusrhamnosusMSLKVIPTKLKDVKLVETDVFGDNRGFFTETYTREKFIEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHLIMSEKDQHHPQLKDAENNFIYGEI
complement(2089167..2089814)       PHAGE_Escher_phAPEC8_NC_020079: putative glucose-1-phosphate thymidylyltransferase; CYG41_10625; phage(gi448260372)     2.00e-83            LactobacillusrhamnosusSYKVQEKPNGLAEAFIVGADFIGDDSVCLILGDNIFYGSGLSKLVQRSAAKTTGATVFGYQVNDPERFGVVAFDEQHHVQSIVEKPEHPESNFAVTGMYFYDNQVVDIAKNLKPSPRGELEITDVNKAYLERGQLDVELLGRGFAWLDTGTHESLHEAASFIETVQKRQNLKIACLEEVAYRMGYIDRDQLRELAQPLKKNDYGQYILRLADEEA
complement(2089828..2091324)       PROPHAGE_Xantho_33913: IS1478 transposase; CYG41_10630; phage(gi77747808)            1.16e-18            LactobacillusrhamnosusMQPLFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAA
complement(2091393..2091620)       PHAGE_Entero_phi92_NC_023693: Phi92_gp066; CYG41_10635; phage(gi726646999)           1.11e-30            LactobacillusrhamnosusMKGIILAGGSGTRLYPITEAVSKQLVPVYDKPMIYYPLSTMMLAGIRDILVISTPRDIDRFQDLLKDGKQLGLNIS

#### region 6 ####
2946351..2946365                   attL                                                                                 N/A                 TGGGTGGTCAGGGGA
complement(2946463..2947620)       PROPHAGE_Oceano_HTE831: integrase; CYG41_15005; phage(gi23097608)                    7.24e-66            LactobacillusrhamnosusMASIKKYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEEEKPKPVFFRDVYEEWYGNYINTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKAVKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAVVLPHHDDLAGDKPENFWTKEQMNHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGYQSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESEATAALAKYMQN
complement(2947738..2948349)       PHAGE_Lactoc_bIL311_NC_002670: repressor; CYG41_15010; phage(gi13095660)             8.34e-15            LactobacillusrhamnosusMTKLLEPNSHLSLGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIANHGGISVQFLVTGKPAFEDLPEDQQMELRKQRDEWLHNLEVNSENLWTELFSDDYVKKLTWQEKTFLENSMRFVQLMKPERQNVAIMKFSSIVAGIIRARTHDYSADQIEEMKTDFAKELSDIIDISQKSPTQKIQDYE
2948464..2948676                   PHAGE_Lactoc_bIL311_NC_002670: ps3 protein 14-like transcriptional regulator; CYG41_15015; phage(gi19343481)     3.46e-14            LactobacillusrhamnosusMQRIKGYRVMLNLSQQDVAKELGISRQSYWSKENGRTSFNDKEKTKIRDLFRKTGIPVTIDSLFFDGKVD
2948701..2948976                   DNA-binding protein; CYG41_15020                                                     N/A                 LactobacillusrhamnosusMALMKAQITLPADFDQILQERIHREVVRVMNETKQQPMQKKLNIGQAAAYAGVARNTLLSWTKKGLLVQVVGGVKRINTADIDDYMNNHGK
2949044..2949265                   hypothetical protein; CYG41_15025                                                    N/A                 LactobacillusrhamnosusMNLFSKEEIALDHELGNLIDDIQLNVHAIAEDSTVTVDGKYISNSELAVTTAKELLRVSEILKLYENEDDADD
2949376..2949567                   hypothetical protein; CYG41_15030                                                    N/A                 LactobacillusrhamnosusMARMASTRLGFQWHDYVQADAECDRYWAFKKAERRSLHEATKKSPRVVPQGEKKTSEKIYIDF
2949612..2949884                   hypothetical protein; CYG41_15035                                                    N/A                 LactobacillusrhamnosusMMKNVSNSTKAPDLGEASFDLSTAKGLLEALRDQFDTMEGSVVSYRNNRTENAAILAYSTNRSFYTWMALLKAIQEYVESSLATIDEVNK
2949881..2950069                   hypothetical protein; CYG41_15040                                                    N/A                 LactobacillusrhamnosusMMKEDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLLEGDVADGRRA
2950053..2950880                   PHAGE_Lactoc_bIL310_NC_002669: hypothetical protein; CYG41_15045; phage(gi13095885)     6.07e-26            LactobacillusrhamnosusMVDVLKVALGYQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGLDGVLVFDIDMGHKSGANGNDTLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDLFSKNGEKTGLDYIATGVPVFPSIRENGMYQPLKGHKITKLAPVPQWLLDEIQRVSHPNPVFGGSTVYRGKRWTGKLLDEIVNGTSTGNRNDFLTKIAGKMFFTGAEPQTVYNLLFTTNDNYLDTPLAESEVNKIFKSVLKAEERRRAVG
2950873..2952297                   PHAGE_Staphy_2638A_NC_007051: ORF003; CYG41_15050; phage(gi66395453)                 1.14e-72            LactobacillusrhamnosusMVKAMPEDIKQEANKVVNVDFTGQEQWRNDLKLDGNGGIRKDSVVNIQLLLDNDQAFANVVAWDDFSEMLIKTKGVKGLPIRKGFWTDEDDAVVRSYMERKHNLLFSKQNEQDAMVVVGKEHSINPVKDWIEAEQWDGTPRAERYFIDYLGAEDSEYTRAVTRKWLAGAVKRVYQPGCKFELVPILEGKQGLGKSTAARNLFPTKFSDSLKSMGKTDEDYKKLQGNWIMELGELSAMKKTEIESAKSFISAQSDSYRGSYSHYVYPHLRKCVFIGSTNQQDYLKDATGERRFFPIRCGVTKPTKTVWRNEESVPKINHDIHQVLAEVKTWVDAGESVFADDKLMQLAKPYQQEAETVDPMKEAIEDFLNMKVPSNWENLSLSLKASFFHTHIDHNGDVATWLQQHLDAGELQPLQQTTTREIMEVVFDKSVDRYLMGRTGSEAKRIKLIMDNMDGWDRERVRINGQRSRGYVRK
2952577..2952999                   PHAGE_Strept_315.2_NC_004585: hypothetical protein; CYG41_15055; phage(gi28876240)     5.13e-22            LactobacillusrhamnosusMLYPESTWARFEQEFPIPEKYRKYYEYKNWHIEPKSSDLSQFEQDHPFAFMLMPEDMQNALYLWTKGLAKRKTINSDYTSYGIKHLFTDLPGGFYITNGMMKGALLAAGFEIADYAELNWRANISGRSIKEQIKLAPHIS
2953030..2953455                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 63 homologue; CYG41_15060; phage(gi9635713)     3.49e-20            LactobacillusrhamnosusMQMSVPLHICMHPGCRRMIPFNQRFCEEHKQDKSKQATNQERMQYEEKELRFYKSTTWTKLSKSFRLRNPTCASCLKRGIIRQAVLVDHIEPIKTAYGWQHRLDESNLQSLCQTCHNAKTAREVAQRRMRSPDRSTPAPKF
2953580..2954050                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 1 homologue; CYG41_15065; phage(gi9635714)     1.30e-21            LactobacillusrhamnosusMGAPLKSVTNLSAHLSKKQLADRVASEKALFTYKELQVQPPTWLDDYAVTEWHRIVPLLKKDIPVSELDAALIASHCQAYSDIQKAAELVQEQGMMVETTDSVKANPAVKMKLDATNQMMRIDEVLGLSVYSRAKLALKSETKKKPDDPFAELVSS
2954047..2955750                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; CYG41_15070; phage(gi418489385)     3.51e-140           LactobacillusrhamnosusMNYATEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPARDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLMENKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRAVPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGPMYKEYKFVSKILTGREQADRYFIAIFEQDSKAEAFAPETWEKSNPLLANAERAKTMRPSLQADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIEPPDTREKDVYIGLDLSKSSDLTSISWLVPEDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLESGMIDYDEVLRFILDLIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIPTTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYTIAMDQNKESEVADNDFYSSDDFGF
2955716..2955895                   hypothetical protein; CYG41_15075                                                    N/A                 LactobacillusrhamnosusMTFIRAMTLVFNLQTVLLILGLICMVAGIWWLFGFGVGMLAVGTALISVAVIINFNKGR
2955900..2957084                   PHAGE_Staphy_phiRS7_NC_022914: portal protein; CYG41_15080; phage(gi560185961)       1.39e-71            LactobacillusrhamnosusMSFFTNSATQPRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIAGDLATNPIEYSDKRISVLLNKAPNDHMTAWGFKFALATNMLLNGNSFARVTKNPSGQVTGFELVPNSQMVVKQDDTTGIISYEYTPDSGRSQRLNASEVLHFKCFTQDGYKGLSPLYSLHDEVGVQKSGHALLKGFFNSGVQGTGILKVNKTQLDTKAKENIRNKFEAANSGDNALKTIILDNDMDYKQLEVNTDVLNLVNSSDWTTKQIAKAFGLPLDRLGIESEHSNAVQSNVMYLQNTLIQYFTCFTSEMDAKLSTGDNRFSFNTDKLFSADPATMQELAVKGLQGGVLTTNEARAKLNLPPIPGGDEIMASLNYTPLSNLTSYQNTRQRSDPENESR
2957071..2958630                   PHAGE_Entero_IME_EF4_NC_023551: major capsid protein; CYG41_15085; phage(gi589893039)     6.42e-45            LactobacillusrhamnosusMNQDDVEKRLNPNAGLTAKADDSQGQDDPDTKKQDDTTNGPKKLSGYAVVFNSPSKDLGGFKEVVDPHAFDHVDLSDVYMVSNHDFSQVLASTKAGTLTLNVDDKGLQFEATLPDTTTASDAYNNVQAGNLSAMSFTFNAAPDGDTFTKDDSGQVIRTIKQVKSLFDVSLVAIPAYDDTNVQVDKRSYTEWLKDHVEDPEQQLPPTEKRKGVNHMTEKTIIDKEEHTESRAYEDYIRSMGEQRDGLTTTTAGAVVPKEVINDVWDLKQSDYDLAKYVTVKQVGTPVGTYPIALTNNGVLATKKELADVADVDANMFKGVDYKVATRAGKIYLSNELVEDSEVDIVAEVKNQLKKLVQNTDNSNIISVLTGKSTTGDNFKHLTGTGLDDLKKTFNIELDPALSLSVIVNQDAFNYLDTLKDSQGRYLLQPSITAPSGKQLFGAPVIVVANKVLPTDKVGTYRIIIGDFSQAIFLAQKNEVNTQWERFDSYSQGLAVVIRNDYEVVDPDAARIVDITPVKA
2958692..2958982                   PHAGE_Entero_EFAP_1_NC_012419: head-tail joining protein; CYG41_15090; phage(gi225626391)     1.79e-11            LactobacillusrhamnosusMSVTTEDLKKALRISHSEDDAMLSAYLLTAKQFVISAVDQTLTDENFGDDPRFDFAVSLLAQHWYINRGVDGATYVPDSVVSMIQQLRGVDYATGK
2958966..2959307                   PHAGE_Lactob_A2_NC_004112: putative head-tail joining protein; CYG41_15095; phage(gi22296529)     8.50e-18            LactobacillusrhamnosusMPLVNSISQLNEPITLVSYTMGNVNGVPVSNVRKEHFTTWALVLSQYLSEVRASVGTKLEDTVTFVVRYDQPETILNSWRIEWQGKKYDIVKLTPDTAKKQWTTIIGKPVANK
complement(2959826..2959966)       hypothetical protein; CYG41_15100                                                    N/A                 LactobacillusrhamnosusMDALKAAFKFMVASTLIVGGVLVAGTVFAAKGIDNAGDKLQEKLHD
complement(2959982..2960230)       GlsB/YeaQ/YmgE family stress response membrane protein; CYG41_15105                  N/A                 LactobacillusrhamnosusMHFLWALIVGAIIGAIAGAITSKGKSMGWFANIIAGLVGSAIGEGLLGHWGPQLAGMALIPSIIGAIIVVAVVSFFVGRSKD
complement(2960480..2960552)       tRNA                                                                                 N/A                 GGGTGGTTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGGGTCCAGGGTTCGATCCCCTGACCACCCA
2960480..2960494                   attR                                                                                 N/A                 TGGGTGGTCAGGGGA
complement(2960758..2961678)       PHAGE_Cronob_vB_CsaP_GAP52_NC_019402: putative ribose-phosphate pyrophosphokinase; CYG41_15115; phage(gi414087562)     2.24e-20            LactobacillusrhamnosusMHELKLFSLNGNRPLAEKIAAEVGLPLSPARVNHFADGEVQIELPESVRGADVYVIQSVSDPVNENFMELMIMVDALRRASAHHINVVISYYGYARADRKARSREPITAKLVANMLEMDGVDRIVAVELHADQIQGFFDIPVDHLKAHRLIGDYFRKLNLGDNVVVIAPDHSGTKQARALAEELHTPIAIVDKRDQEHIGVIGNVEGMHAIVIDDLIDTGDRIVDSYKALSAAGALDVYAAATHGVFSRGAVDRIKHLGLKKVVITDTIQLDPKHQFEGLDQISVGPMLGKAIKLINSNQSIHVLF
