gi|00000000|ref|CP025474.1|  Helicobacter pylori strain H-137 chromosome, complete genome. 1637442, gc%: 38.73%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
876447..876458                     attL                                                                                 N/A                 TTCTTTTTTTTT
882248..882259                     attL                                                                                 N/A                 TACAAAAATTAT
complement(889725..890450)         PHAGE_Helico_phiHP33_NC_016568: putative transcriptional regulator protein; CYK58_04235; phage(gi371671368)     1.02e-152           HelicobacterpyloriEAYEDSLATQGEIAARFNISRQTLNQWAKKGEWTSRKVFNEIRAMYETLGMSIRELAQKYKMNEANLKYIKTRQNWQKRRITKQLEEKEIKEILGDKLTEKNMDLFLDTKKEEVKETIKQSLEHLNLDPIVLEAITETTSDELLLKAMNTAYIKKQILFCAVVARGELIKMIKRASLTDNGKDSANIIVAAEKVSKLFIDAGVSLFGKEQIQVIETNNNNNIAQMGMSDLLALANADDNVD
complement(890502..891761)         PHAGE_Geobac_E3_NC_029073: transposase; CYK58_04240; phage(gi985758480)              6.51e-60            HelicobacterpyloriMSAISITHKIALKPNNKHITYFKKAFGCARFAYNWGLAKWKENYQLGIKTNHLQIKKEFNALKKSQFNFVYEVTKYATQQPFIHLNLAFNKFFRDLKKGLVSYPKFKKKREFQGSFYIGGDQIKIIQTANTDYLKIPNLPPIKLTEKLRFQGKINNATITQKGDHFYVSISCGVDESEYKRTHKLQESHNKLGVDIGINSFVSLSNGLNIYAPKPLDKLTRKLVRISRQLSKKIHPKTKGDKTKKSNNYLKHSKKLTHLHEKIANIRLDFLHKLTSSLIRHSNSFCLESLKVKNMFKNHRLAKSLSDVSMSAFNTLLEYKAKYSNKEILRADTYYPSSKTCSNCQKVKQDLKLKDRVYQCLECGFESDRDINAAINLLKHLVGRVTAEFTPMDLTALLNDLSKNRLATSKVELGIQQKS
complement(891736..892389)         PHAGE_Microc_Ma_LMM01_NC_008562: putative site-specific integrase-resolvase; CYK58_04245; phage(gi117530307)     4.31e-71            HelicobacterpyloriMNKRMLSIGQASKLLGVTIQTLRNWDKKDLLKPDELTKGGERRYKLESLRRINRSVVFNQDELKTIAYARVSSHDQQDDLIRQVQVLELYCARCGFNYEVIQDLGSGMNYYKKGLTKLLNLILDNQVKRLVLTHKDRLLRFGAELVFSICEAKEVEVVIINKGDENVRFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDEMQEVITNNVSYLNHA
892422..892433                     attR                                                                                 N/A                 TACAAAAATTAT
complement(892640..893227)         PHAGE_Helico_phiHP33_NC_016568: putative histidine kinase; CYK58_04250; phage(gi371671356)     1.78e-125           HelicobacterpyloriMIEVSEVIAKVRERLNDNEVGNYEILDSVLVENINQALLKICLEFKLNKAITRALITEEERFLTINNLLGIESVKLDKKEIESRNTIEKDSGEIELLILSDKISVTPFKSGELEVIYYTYEEVSNILDAIKLPKICLDVLVYSVLCNLLEIPNNETNFSVLANYKQLLKLAKDNLTNYLSLMYSKNIHFSKVVRV
complement(893224..893625)         PHAGE_Helico_phiHP33_NC_016568: hypothetical protein; CYK58_04255; phage(gi371671355)     1.57e-61            HelicobacterpyloriMRVVVLDTSGVLEAFDYRGVLIHTQEIKENLNANLPFTQKNFFKFNGVSFGVCDGVGNLDYRDYPNNLNFNALLCETIENYLLNAKEPENKQQKALLVDFLKVYDKNIEKGFTYLKPRFFLEKETELLERILK
complement(893625..894020)         PHAGE_Pseudo_Lu11_NC_017972: putative tail assembly protein; CYK58_04260; phage(gi388684690)     1.68e-11            HelicobacterpyloriMRKFTDPIVAEFSNDGKSLRLVEGFEYYLKNDHSKKLIIPSGFSSDGFTNMGFSFVIPRYGSGLKCAIFHDYMCDVLNGVVPRPHDFFINTRKECDDLFLESMLEVKAFSVFKAVLIYYAVRLFAKVKGLK
complement(894017..894568)         PHAGE_Helico_phiHP33_NC_016568: putative tail fiber; CYK58_04265; phage(gi371671354)     4.64e-62            HelicobacterpyloriMILENACDYKDYLASVFDAMGFYGSFEVMDNNIHLNIIPKANNDLPTKEQVLEKLQELTLKKKKQELENQINAICKEKIVKEFRSSVLGSLHAYDLTLEDQANLQALVLANIDSVFRCAEVNNGVIMDKTYKNHTKAQILKLSQEALKFKQNLIVFYGREKERLNAINRLEALEKFVIKEYLT
complement(894571..895847)         hypothetical protein; CYK58_04270                                                    N/A                 HelicobacterpyloriMNYPNLPNSHLEITSQPEVKEITNELLKQLQSALNSNTLFTEQVELSLKGIIRILEVLLSLDFFKNANEIDSSLRNSIEWLTNAGMHLKNKMKEYESFFNDFNTSMHANEQEVTATLNANIKNIKSEIKKLENQIIETATRLLTSYQIFLNNAKESATTQINTNKTESIQAIEQAKTSANNEINTNKTASLEAIEQAKESANNQITENKTQAITNINEAKESAQAQINTNKQEVLNNITQEKQQATTEITEAKKTAFNELLETLKPKFSGLFAGVYYIRNVIYVNGGWEQKIKDLSDYTLEKKRNTKKFFLAFRKHNQTLILAKRPKAFKKAFKKSRTNTRVKSTIQNFWKTAVFVCIMGIFMGISIILMKRLQASKNYPTIRSARCLMDLIFLMLLRSHKTTTPTTQHKQGVIAA
complement(895849..898725)         PHAGE_Helico_phiHP33_NC_016568: JHP1044 mosaic, putative crystallin beta/gamma motif-containing protein; CYK58_04275; phage(gi371671353)     0.0                 HelicobacterpyloriMKLPKALNEATAGAALKYHIKRALERSHSISDFSKQLELSAKTSKFSNNTLKIIEELNNGVKQASEEIKTNARDFSNEKLTNEQIKDLLNNAEIPTSGRDAIIFGTNNLNPEIVEFLHKNNKKMIIEKASNKELELLKDANFKHPENIRASLDHDAITHILKRHGVNSVNVRNGENPITNEDIANYRYIVNNADAILRTLDNENKELISAFKQINGYTVVVEQAINKKNELVLKTMYKSNGDYKDNNAYKKFSSTHTLNADVKVNHRLSSYGGATENTTQKPLTSQEELLKTQENAQKTTPQPTNLSPLEQARAEKLAKLESEKLESEKEFTRLKEQETKRKEALKKKLEHERGNAGNIESATKIEVGEDIPTHTQKQIPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRVQGMLNFTPKSRFAYERAIKEYYHIDLKPDELLVRVPHNRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYEPKLKELEKQLNADSIYSLKNIVAKNLNFDKATHPNVGDSNLALLMFNMPRTKTQGIELLNRWQKEFSNDIKSYEKVKKMFVDNAGSFHNLIHDMSFPNVSLNAYLSDIMDRSFANLKNYPSTSESLKDLSEKFYKTNSLEMFEKSDQSASDISEILGASVARFARFDDPSKALFEALRSDNIKKGLKEFKIADVTKDMFDPNSKEFKDIDIYDFTHYLLMVDREPNENNPTLKRLIQAVKDMQKENEKRIKKQKLETPSEWGHNYSEFKNDGLGAINKLLETKKGFVAGAFYKEGLGDIDLVWGNKDYGLEHILKRREDQALNNGINEQQAKEYAMRVVKTIPEVIEKGVKVERNGRIAIEYENIRVGLKDNWKGEKLPNHWVITSYEKLENSESLYTSPLITKSEILPLNSNEPNSNTKKLNKE
complement(898960..901224)         PHAGE_Helico_phiHP33_NC_016568: JHP1044 mosaic, putative crystallin beta/gamma motif-containing protein; CYK58_04280; phage(gi371671353)     0.0                 HelicobacterpyloriMQNTDIDLKNLPSTPLYPLKNPVLTLEQLEQKQKELIADLNQKSKELTELGLLDKLGGFVGYQTDNAKEREKQLTDLKTQALDNKLEFKDLPNAIKDDYYNKAETSLLNPLKTKNEIAKEDYQKDLQRKAILNKTTKELTESDKDLISDDSGFFNNALDFITGTSEAEKLKEYKEKEKAKDITKEIQKAYSTFSNIDKNKDFFSLFTSEDKEAQEKAKQDFETIAKNLYHFDSVIYNEKNEPFVVKGDKVYKINDGFIDNFTQSLLNNKFSLAGSVAGGITGAKYGKNAGALGLVGGAIAGAALGATTGAATDAIVTNLALDRENKADEIIRHALSEGALSLATDTIMLGAGKVLKPLAKAPLKLAEMSMPFQFTKNFFTGNAKRASEIIETTLSKEQQEALKEFSAQFGGETKINQESGNDFLRDKIKSVFNGDENKLQAYDKVKEILTLDNHKEQQQAFIRAIRSDETGNTLAFLIEAANLSPKANANLKSILNQTTENLTKSLRQFDLKDYEIKSVFDHLQGTKESYDKALNEIIGKLYDNSYKVNLRENVQDATNFEKFLNDLKAQGEIDVQAKSFLRQIEENVYNPNGVTYEQLKNSRQLINAYLRNVRDPSTLGYIQKASANFLKNDIDNAIESLLKQNKSAYEKISELQKSAISDYKEMKQALELVDKAKIRDKHTHESDAINSLMKIIKGQGQKDLTNYQALTKGLQESDKERLELTMLNRLMEQSLKQDESLKVFDSAHFFNKLN
complement(901277..902952)         PHAGE_Helico_phiHP33_NC_016568: putative SMC (structural maintenance of chromosomes) protein; CYK58_04285; phage(gi371671351)     1.36e-78            HelicobacterpyloriMSWIDISVGSGSSGQGSSNNLLSGFINSLGNALSNASSSGGLRGFPWQAGSENDQIVGYYDDPQGYYPVIKKFLAEKNYHSNQRLKNAFERIINIQNRINQLNHEISAKQNAINSLNQEISNLNNQTNQQNQALNNLNQEIESLNNEISANENAINQDEEKLNALELQTNAKKQVEKEIKESLKQLEKLKQELKRLKKQSKWKKEFNFLTDNPPNIQAQQENALNRSSQENARTNFFKPILMRYCLKALSMNTTIQGKLPMTPTLLTTWTASITALEMPIRFITAIKSFYRVMIVTTLEANKKPSFTIWFITKARSKAPYFSNRSPNTPKDGLRFPVEPLKKIKGLKNNKRKKKKNATLKTTPSSKKSKSKKTPNKKASKLNKTTPKRRTLIKKRAQKTLYNNKNKTKANETRKNSKNKTKKALNETLSKKETTTTRLTLGMNDPLSNERKITYLGYKKDSIITDEVDPTRKRFLPTKTKALKNTMKKPRLKTFDFIGVKAKSGYCIVFNCHHTNRTNFHGYCEITLAA
complement(902954..904519)         PHAGE_Helico_phiHP33_NC_016568: DNA primase; CYK58_04290; phage(gi371671350)         0.0                 HelicobacterpyloriMKITNLQPLKDRIQIMEVLERYIDLYRVGASFKAFCPFHDERSASFMVSHEKNIYHCFGCGVSGDALKFLQEYKKLSFIEAVEEVAQIYNYHLEYESDAKTERNNQLKEILAFANNLFKERLKNEPKVLNYLTQTRAISLEMIEAYDLGFCLHGDLEVLKEHFSESDLIACGLFSNKNDKKELKSFCNYRITIPLKDSKGHIRSFSARLCIPRLLKNNNAPKYINGRETQIYSKSFFLYNYYRAIDCIKQKKQVIICEGFFDVLAYEYFDYKNAICTSGTAFTKEHLSFLNKLGVELCFSFDNDNAGTQATIRALELCLKNHITNMSVIKIKDPSIKDLSDYQKLNKRPNLSKINGFKFYCAYLLRAELPTPQKDLNYKHILKILEVFEPFTQSDLIKILNSFLVQKNIKPVKEKKTKLDLLEARVYATMLESEEFRYIARRYLTPSDVGYPTFFKRLVSGDFRGLDFLKRFKPIAQSYQKSSLVKLKTKGLKHSLADALERKDYALAEGINAKIKEIQAV
complement(904516..905691)         PHAGE_Helico_phiHP33_NC_016568: DNA repair protein; CYK58_04295; phage(gi371671349)     0.0                 HelicobacterpyloriMENLIIKSFLDYPKHIEDFLEDISLKSFTPFNQKLIKILIGMNHRNQVPRLETIKLRIGEKEFESEEFKRILEADSYPDYLNLKSDFKTYLCFQMQEILANKLKEATRKSEVFDYEFLNKYINLGITRNGKYFWEWEEYFKNKPPIEKIQTGISFLDTITEGGIELGQIVLLSGDPEAGKTLLGVQFLMSAHQQHKVTYFGFEFSVRKHIETLKSKNFTIKAENYFIDDQSCELNDLISQIRSLAKEGHKVFLIDSQMKIQAPIVGRTIEEVETSKFSVLGETARSLQVLIIFIVQNSKNDSYTPTGSRKGGHEAHLMIRIERLKMNQLKTIKGFSERAKYRRIVILKNKQTGLSGYRYVKNVDYRFFEVDFTDNEPQMQYDEHDEYGGII
complement(905703..905968)         hypothetical protein; CYK58_04300                                                    N/A                 HelicobacterpyloriMRRHGNDHSELIKGLLLTKQKKSAEKATKNCKGSKEKTITNRKSSVLFKVLNNSNKKTFSCIWPRNLTAFKFKKRTKRNDAA
complement(906160..907156)         PHAGE_Helico_phiHP33_NC_016568: putative phage replication protein; CYK58_04305; phage(gi371671346)     4.70e-121           HelicobacterpyloriMNYILKQPMKFGYTQISNEICDDERVSDIAIAIYAYVKKHATTFKLTIEDIAKRFNRNTKTIYKYLNELKDLGYIEFERERKNDGTFGKFFQFIMGNFSKNLSEKQDKKTAQKEAKKDANHMENNSMWIKPQKEASNAHDSEAQSTSTYFPAFTLIKDQNKHENIRVSENFSTQEFEEKNQVSLNSLDLKNPDRNSLLKSSKISNPSLFNRFSAFFSSILGNLDTKHLNQIRKASFRIFELSQREAQIKLHKSVIAPMRSLESARMRFSGLHPPIYTPKLRNLGHAFKAKLQPQKRSRTTKRRNHGSVLLRLAKSQVRHGHLVG
complement(907153..907461)         PHAGE_Helico_phiHP33_NC_016568: putative transcriptional regulator; CYK58_04310; phage(gi371671345)     5.51e-42            HelicobacterpyloriMEQEPLKAIDLEVLEALNKQAYLPKSADKISKDLNIDYYYTLKIFNKLEKKGLCDQWIVNKKKESEKNNNFYKVCYLNELGKDLCAYLKALKGSKTHKKDQQ
complement(907463..907678)         PHAGE_Helico_phiHP33_NC_016568: hypothetical protein; CYK58_04315; phage(gi371671344)     7.28e-29            HelicobacterpyloriMKDNSQNNHTKEVFQYLSYQTVKERDADLSFFDFIQKLEKLQQTHTIKSSVCNVRNRRVKSYFILLQKKAV
complement(907675..908364)         PHAGE_Helico_phiHP33_NC_016568: integrase/recombinase; CYK58_04320; phage(gi371671343)     1.59e-127           HelicobacterpyloriKKNTLISLNALLKSFLEFCESERFLEKNHYFAITLKNAQEGEKIKPFNLEEVKTLIENAPSLRLKAFLVVAFFTGLRTGEQLALLWSDIDFKNKKINIDKSLNLSGVITTPKNKPSIRQVDLLEPVEKILKELKASEPANKKMIFLSIPKRTQEFQQAFKKLLKALNLKERKLYTTRHTFASLMLSHGEEAMWVSKTLGHKDLNTTYSTYSHYIPKQDKERAKFIKETL
917316..917327                     attR                                                                                 N/A                 TTCTTTTTTTTT
