gi|00000000|ref|CP026098.1|  Shigella flexneri strain FDAARGOS_74 chromosome, complete genome. 4576448, gc%: 50.88%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1346849..1347841                   PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; MC63_006995; phage(gi100004)     1.12e-60            ShigellaflexneriMSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE
complement(1347961..1348368)       MarR family transcriptional regulator; MC63_007000                                   N/A                 ShigellaflexneriMALRNKAFHQLRQLFQQHTARWQHELPDLTKPQYAVMRAIADKPGIEQVALIEAAVSTKATLAEMLARMENRGLVRREHDVADKRRRFVWLTAEGEKLLAAAIPIGDSVDEEFLGRLSGEEQELFMQLVRKMMST
1348515..1349108                   UbiX family flavin prenyltransferase; MC63_007005                                    N/A                 ShigellaflexneriMKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTIIELETPYSARDVAALADFSHNPADQAAIISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLEHPHARRWQGLPQARNFSQENE
1349108..1349530                   phenolic acid decarboxylase; MC63_007010                                             N/A                 ShigellaflexneriMAFDDLRSFLQALDDHGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPIAPERRANPAWAQNTVDGEEINLFDILPLFRLNDGDGGFYL
complement(1349806..1350369)       hypothetical protein; MC63_007015                                                    N/A                 ShigellaflexneriMRKAPQGSFPADGKEPIIERIFRLVERYPSRNAAARAWGINEGTLKNYYNRRDYAPIPRPHQLKKIAESENVTLEWLMTGEGDVEPKDSKEPKKENADNVDAQILMFLSFLKPQEKQQVADVLGRKGAEQLLILLDEHIQELHALVGVRRAIALSLGNLPDEKVREIYALSEAKGDHLNLPQKAASA
1350522..1350773                   PHAGE_Entero_Mu_NC_000929: DNA binding protein ner; MC63_007020; phage(gi9633495)     2.41e-05            ShigellaflexneriMRQREDSDRDWPSLKIQLALKDNGWSSFRELSLHAGYAQDSLKAVVRTPNKKYERVISDAIGVPPEIIWPSRYRNDGFIRKAS
1350775..1352871                   PROPHAGE_Escher_Sakai: phage transposase; MC63_007025; phage(gi15834199)             0.0                 ShigellaflexneriMQSYVTVNDLLGVPGMPATTKGIRQALQRFSRDLGDVSRRREGTKAIEYHIDCLPEITRKALRERYVEQLVATENNVSEVKAVTRKTRNPDAVQAIEAYRGSPQLMEERLNALTENQRWVSEARAALVVEVLKLESAGNLGRLKAINFLVEKARKGELPERLQQAAVNANAKRGANRTISRDPLYQWVLKYNQSQNAAERLLLLAPGKRDEIKPEEISWLPEFLAQYRQVNGRPMSEAYEDFVAEWQRRHADEPYMLEVMPSYDVVRYAMKKLPEVVKQKGRVTGSEYRQLEGFTRRDWTAMPVNYVWIGDGHGMKLKCAHPIHGRPFSPEVTFVIDGGTRFVVGWSLDLAENVFAVAGAIQHGIRNHGKPFLYYSDNGSGETADMLDKEVVGILPRLGIKHPTGIAGNPQGRGIIERLNRTLPMRIARRYRTYFGKGADRESLRVLNRDLRSAFNALQQDKPLNDRQKAAMRELPSWAELIEAIREGVEWYNNRPHSELPMKPNGRHYSPTEFRKKRLAEEDTEIEWLSDLELRDMFRPMVERPVRRCEIQWLNNIYYAPELRDEHGRKVLISYDIHDAERITVRRKDGSFICEAIWNGNKRAAFAVSAEYHKQQQRIKGMRKRAEEKIRDAEDEGIQILEHKQAEPWLSNVYRPVGNVVAVQQPEYEEEHDEEFERDFRLGMQKLFAMQEEDDPLA
complement(1353011..1354166)       hypothetical protein; MC63_007030                                                    N/A                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTPPEKGSVLLVPARWLNWNLKFCNCVRRMKLALSEIYKKQQRILHRSRKIRVNRTMATTISHSDVSGIWCIQERLLQLGTATLRQKTKAAKTGDGGTYPHRNIWNPAAPDGAGREWHHRWSPTGTSSGAEATLAETQVQSYYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQHSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
1354252..1355163                   PHAGE_Entero_Mu_NC_000929: DNA transposition protein; MC63_007035; phage(gi9633513)     5.80e-69            ShigellaflexneriMINEGDKSQEDIADEAGMSPATLSALRKGEYNGNVEGMHDKLQKWYQVWQKGQNLSGTPGVVKTQIFCDLHELFKTVRSLGIISVVVGVPGVGKTFAAREYCRRTANAWMVTLAPAHSSVTECLLEIAYALEINNPGRNKGNITRAIRRKLGGGKETSGRVNPLLIIDEADHLSVDGLEQLRAIQDATGVGMVLIGNPKQMADATRRGTDELARLFSRFAMTKQLRKVKKTDVMAVAKAWGVTQEDELDLLMRVAEKPGGLRVLTHTLNHAWLAAKGAGTSLNKSHIKAAFKEAYSNPRLLNW
1355179..1355406                   PHAGE_Entero_Mu_NC_000929: kil; MC63_007040; phage(gi9633497)                        1.11e-44            ShigellaflexneriMMSRNIKMATDAQNWLQAHGSHVNESYLGVARPVLEITCPPPELVRNAVRIMEHKSGVARSVWTARLNGCQIIWR
complement(1355464..1356159)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; MC63_007045; phage(gi557307573)      4.84e-100           ShigellaflexneriMASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(1356193..1356831)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; MC63_007050; phage(gi100018)     1.47e-106           ShigellaflexneriMSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNLLATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHSTWSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAFLLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEVMLPTY
complement(1356828..1358090)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; MC63_007055; phage(gi100019)     5.51e-165           ShigellaflexneriMIKIGVIADDFTGATDIASFLVENGLPTVQINGVPTGKMPEAIDALVISLKTRSCPVVEATQQSLAALSWLQQQGCKQIYFKYSSTFDSTAKGNIGPVTDALMDALDTPFTVFSPALPVNGRTVYQGYLFVMNQLLAESGMRHHPVNPMTNSYLPRLVEAQSTGRCGVVSAHVFEQGVDAVRQELARLQQEGYRYAVLDALTEHHLEIQGEALRDAPLVTGGSGLAIGLARQWAQENGNQAREAGRPLAGRGVVLSGSCSQMTNRVAHYRQIAPAREVDVARCLSTETLAAYAHELAEWVLGQESVLAPLVFATASTDALAAIQQQYGAQKASQAVETLFSQLAARLAAEGMTRFIVAGGETSGVVTQSLGIKGFHIGPTISPGVPWVNALDKPVSLALKSGNFGDEAFFSRAQREFLS
complement(1358087..1358995)       PHAGE_Synech_S_P4_NC_048102: portal protein; MC63_007060; phage(gi100069)            9.17e-07            ShigellaflexneriMKTGSEFHVGIVGLGSMGMGAALSCVRAGFSTWGADLNSNACATLKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGAKS
1359191..1359958                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; MC63_007065; phage(gi100021)     2.06e-95            ShigellaflexneriMIPVERRQIILEMVAEKGIVSIAELTDRINVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE
complement(1360009..1360661)       PHAGE_Escher_RCS47_NC_042128: putative DNA polymerase; MC63_007070; phage(gi100100)     3.04e-28            ShigellaflexneriMPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFFPETDLLISVGDNIDRGPESLDVLRLLNQPWFISVKGNHEAMALDAFATGDGNMWLASGGDFFDLNDCNKRQICCNSITFHILLKSLTTNMSSHMQIIRVMNISLAKKRRANYSGLFIVCRNRLMASYNKTALIILYLDICLITFRRSLTRFILIPDRRKVGGCHFIKGAG
complement(1360767..1363328)       PHAGE_Bacter_B124_14_NC_016770: putative mismatch repair protein; MC63_007075; phage(gi374671664)     2.12e-12            ShigellaflexneriMSAIENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV

#### region 2 ####
1419364..1419375                   attL                                                                                 N/A                 TATTTTTTGCGG
1425726..1426175                   PHAGE_Clostr_phiCDHM14_NC_048665: hypothetical protein; MC63_007430; phage(gi100014)     5.50e-08            ShigellaflexneriMGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE
complement(1426176..1426836)       transcriptional regulator; MC63_007435                                               N/A                 ShigellaflexneriMTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREVLSQLVAERLVTVVNQKGYRVASMSEQELLHRRPRQYGSDAGQSGDCPRWRMGGRRSRKSASAQAGSLRQRENAVGSASSGVSYSNCGGLWFSLFAANATVVSGGALSIYLAAANGAFGGNAGGTRSAPDPDCGGTGARYSARQVNAPAFTDANSHYPAGDGWQLA
complement(1426857..1427486)       GABA permease; MC63_007440                                                           N/A                 ShigellaflexneriLAALPNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLVLWQKTPVHNTR
1427528..1428213                   PHAGE_Entero_P1_NC_005856: InsA; MC63_007445; phage(gi46401643)                      8.87e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNSGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAVRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITTAA
complement(1428381..1429622)       PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; MC63_007450; phage(gi16130540)     0.0                 ShigellaflexneriMARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKTRAKKSIGPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKASVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRQCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLSQLMQTMRTASISLSTRCLFMWQLLTITRPAEAAEARWEEVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAVLEMMKPLSGNREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDAIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWANFVMAADRGSMIEGGIKGMKLVG
complement(1429827..1430189)       tRNA                                                                                 N/A                 GGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTCCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCA
1430104..1430115                   attR                                                                                 N/A                 TATTTTTTGCGG
complement(1430404..1430886)       PHAGE_Escher_500465_1_NC_049342: HNH endonuclease; MC63_007460; phage(gi100046)      1.63e-116           ShigellaflexneriMTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR
1431018..1431494                   PHAGE_Escher_500465_1_NC_049342: primase; MC63_007465; phage(gi100047)               2.15e-114           ShigellaflexneriMILFVGFLLMEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELAANMVQAFTVRAKEVYSAR
1431484..1431774                   PHAGE_Escher_500465_1_NC_049342: exonuclease; MC63_007470; phage(gi100048)           3.79e-62            ShigellaflexneriMLGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRTDIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK
complement(1431836..1432177)       PHAGE_Escher_500465_1_NC_049342: recombination protein; MC63_007475; phage(gi100049)     9.03e-80            ShigellaflexneriMRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
complement(1432326..1433987)       PHAGE_Escher_500465_1_NC_049342: putative single-stranded DNA binding protein; MC63_007480; phage(gi100050)     0.0                 ShigellaflexneriMLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKYDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA
complement(1434073..1434951)       PHAGE_Escher_500465_1_NC_049342: hypothetical protein; MC63_007485; phage(gi100051)     0.0                 ShigellaflexneriMNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLTDLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMIEFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGWSKKLF
1434883..1435077                   molecular chaperone GrpE; MC63_007490                                                N/A                 ShigellaflexneriMCCQCSRVPWVSHNANALEMIIHFSEVLVAKIDDNVSASLETLKLIPIISEVSEMNAKKTRRNS
1435074..1435667                   PHAGE_Escher_500465_1_NC_049342: tail assembly protein; MC63_007495; phage(gi100053)     6.44e-57            ShigellaflexneriMSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKIANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA
complement(1435722..1436963)       PHAGE_Escher_500465_1_NC_049342: minor tail protein; MC63_007500; phage(gi100055)     0.0                 ShigellaflexneriMVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE
complement(1437029..1437820)       PHAGE_Escher_500465_1_NC_049342: minor tail protein; MC63_007505; phage(gi100056)     0.0                 ShigellaflexneriMPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLVICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS
1437987..1439348                   PHAGE_Escher_500465_1_NC_049342: tail length tape-measure protein; MC63_007510; phage(gi100057)     0.0                 ShigellaflexneriMFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGNFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR

#### region 3 ####
1489546..1489557                   attL                                                                                 N/A                 ACCGATATTGAA
1489941..1490016                   integrase; MC63_007800                                                               N/A                 ShigellaflexneriMRCTGNSGHYHLFFFAAIYFSLA
complement(1489985..1491141)       PROPHAGE_Escher_CFT073: transposase insF; MC63_007805; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1491221..1491358                   bacteriocin; MC63_007810                                                             N/A                 ShigellaflexneriMPGSDEETRADFENRRRNSVARNARNILEAIRGEILSTVENVVDV
1491413..1492110                   PHAGE_Entero_P1_NC_005856: InsA; MC63_007815; phage(gi46401643)                      8.33e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAVRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
1492216..1492404                   PHAGE_Edward_GF_2_NC_026611: hypothetical protein; MC63_007820; phage(gi764162276)     4.23e-11            ShigellaflexneriVYGGSPADIAAAIWRKAPPGIDMNGNTTFTVADKEYDPPYPEYVISWQTLKPVSLHVSVTLKK
1492489..1492692                   helix-turn-helix domain-containing protein; MC63_007825                              N/A                 ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFA
1492702..1493163                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: minor tail protein; MC63_007830; phage(gi100055)     9.25e-10            ShigellaflexneriMLYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
1493160..1493507                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail tip protein; MC63_007835; phage(gi100054)     4.95e-54            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWAYRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWQHPKRTERPGIRI
1493527..1495128                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; MC63_007840; phage(gi100053)     0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHQAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
1495161..1495445                   PHAGE_Edward_GF_2_NC_026611: hypothetical protein; MC63_007845; phage(gi764162276)     3.36e-17            ShigellaflexneriKKSDYLPSDITRQVQQSVLDAFNGTDGGLRARVASVVSAGRYYAGIYKTDPEHIDILGLTVSRDGSSWTTAVTFGIDEIPVLDVSDISVKLQEA
1495447..1496051                   DUF2612 domain-containing protein; MC63_007850                                       N/A                 ShigellaflexneriVQNVAATVLAQYAASPRLNALINSFNAALSPTVLSVIFMVLSGTSIPQKSMVLMSGERLWVSVAGRRTILITWASASPGWTPRWMIPVRLIRHRFTTENRIPGLLTCLMLYTGGYKPCRTLLTVPFRILTCDLCSEKNAGLMFIMAGGVTSLSPRSRWQNWRLSSRRVHCHPRRVFMFQFRSPVMKASGA
1496038..1497024                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; MC63_007855; phage(gi18249918)     3.69e-81            ShigellaflexneriMKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFPPVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAILAGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLPDLQNKGTARDNLQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEGQGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGNSIVLGDNDTGFKQNGDGILDVYANSQRVFRWICPYISRHLLSLNPLQARCRRYSRGER
complement(1496949..1498222)       PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_007860; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRGSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
1498286..1498759                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; MC63_007865; phage(gi849255282)     2.96e-28            ShigellaflexneriMAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
1498762..1499307                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; MC63_007870; phage(gi18249919)     1.58e-94            ShigellaflexneriMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
1499331..1500599                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; MC63_007875; phage(gi18249920)     2.35e-105           ShigellaflexneriMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTDWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIVSPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
1500550..1501174                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_007880; phage(gi18249921)     3.93e-05            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMARRTGGEAVHVMERSYLECWPQLTGPPVPGGHAGKICRGTNKYDVECGSAGAADDAGTGTGHSDDTGHCAQRDLSPSANERGAERSGFGFNSGVRVA
1501174..1501353                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; MC63_007885; phage(gi849255281)     4.26e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1501354..1503180)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; MC63_007890; phage(gi169257209)     6.15e-05            ShigellaflexneriMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
1503699..1504253                   PHAGE_Escher_pro483_NC_028943: DNA invertase; MC63_007895; phage(gi971758535)        2.64e-114           ShigellaflexneriMLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLEAARAQGRIGGRRPKLSPEWAQAGRLIASGVSRQKVAIIYDVGESTLYKRFPARVI
1504305..1504487                   hypothetical protein; MC63_007900                                                    N/A                 ShigellaflexneriMLYVTGLLRRKAPSFRARRTLKKVVFFVLLNLCKIFLHHKSNNTFNNTLLYHYENKCVFI
complement(1504489..1504560)       ferredoxin; MC63_007905                                                              N/A                 ShigellaflexneriLCCFESFLMALLITKKCINCDMCE
complement(1504592..1505440)       MurR/RpiR family transcriptional regulator; MC63_007910                              N/A                 ShigellaflexneriMNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAALRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV
1505649..1506284                   phosphatidylglycerophosphatase C; MC63_007915                                        N/A                 ShigellaflexneriMATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE
1506309..1506845                   PHAGE_Achrom_83_24_NC_028834: tRNA-specific adenosine deaminase; MC63_007920; phage(gi971747971)     5.97e-07            ShigellaflexneriMRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD
complement(1506842..1508398)       PHAGE_Bacill_BM5_NC_029069: hypothetical protein; MC63_007925; phage(gi985757795)     3.85e-11            ShigellaflexneriMKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN
1515287..1515298                   attR                                                                                 N/A                 ACCGATATTGAA

#### region 4 ####
1560623..1560635                   attL                                                                                 N/A                 CTGGGCGGTCGTG
1566246..1567712                   PHAGE_Staphy_42E_NC_007052: ORF012; MC63_008190; phage(gi66395520)                   3.77e-36            ShigellaflexneriMLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLPTTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLVTVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIPVIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTIDELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS
1567781..1569358                   glutamine-hydrolyzing GMP synthase; MC63_008195                                      N/A                 ShigellaflexneriMTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPIFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFVTVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEAQKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKTDLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE
1569645..1570918                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_008200; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(1570930..1571328)       PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; MC63_008205; phage(gi418487682)     5.46e-87            ShigellaflexneriMKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQHDEWVAERNREIQQEKQRRANAQAAANKRAATAAANKKARQDKLDAEATADKKRDQSYEDELRSLEIQKQKLALAKEEARVKRENEFIDQ
complement(1571344..1571862)       PHAGE_Escher_TL_2011b_NC_019445: putative outer membrane lipoprotein; MC63_008210; phage(gi418487638)     1.01e-120           ShigellaflexneriMMKFKKCLLPVAMLASFTLAGCQSNADDHAADVYQTDQLNTKQETKTVNIISILPAKVAVDNSQNKRNAQAFGALIGAVAGGVIGHNVGSGSNSGTTAGAVGGGAVGAAAGSMVNDKTLVEGVSLTYKEGTKVYTSTQEGKECQFTTGLAVVITTTYNETRIQPNTKCPEKS
complement(1571965..1572111)       succinate dehydrogenase; MC63_008215                                                 N/A                 ShigellaflexneriMGLSKRQIFFHLKFYVFVLTDVYPVWLRNKYKINIYVVMIYFYKLFPA
complement(1572173..1572364)       PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; MC63_008220; phage(gi418487683)     4.09e-38            ShigellaflexneriMSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWLHHQSKKEAQQSTLSVESPVQR
1572382..1572534                   PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; MC63_008225; phage(gi418487684)     5.72e-27            ShigellaflexneriMSHAVDGTYIKAQQDKMVNSSLCKKASVDTYFNVMEVNLIIYNDDVIMMN
complement(1572625..1572738)       glutamate decarboxylase isozyme; MC63_008230                                         N/A                 ShigellaflexneriITVAFSFIDAQQNPPHPEGGVFRQASHLTSNDDYSSL
complement(1572748..1573445)       PHAGE_Entero_P1_NC_005856: InsA; MC63_008235; phage(gi46401643)                      1.82e-55            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPCTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYRRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
1573487..1574647                   histidine kinase; MC63_008240                                                        N/A                 ShigellaflexneriMAALPNATYIKIRDKWWGLPLFLPSLILPIFAHINTFAHISSGEVFLFYLPLALMISMMMFFSWAALPGITLGIFVRKYAELGFYETLSLTANFIIIIILCWGGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPATLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVRNPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSLLLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSSSYLVFSFIVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDALWSALCYLRIPGMEMLVKNYGIMLRIQYEVYWQ
1574299..1574311                   attR                                                                                 N/A                 CTGGGCGGTCGTG
1574628..1574702                   integrase; MC63_008245                                                               N/A                 ShigellaflexneriMRCTGNSGHYHLFFFKQPSDDIFP
complement(1574671..1575827)       PROPHAGE_Xantho_33913: ISxac3 transposase; MC63_008250; phage(gi21231087)            1.14e-07            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQVTSARKGLGTPGSRTVAELESEILQLRKALNEARLEQDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLHQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISHRQPSGKNIIRWLLAA

#### region 5 ####
1830507..1831583                   PHAGE_Staphy_MCE_2014_NC_025416: glycerophosphoryl diester phosphodiesterase; MC63_009550; phage(gi725948760)     7.41e-11            ShigellaflexneriMKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
complement(1831625..1831831)       hypothetical protein; MC63_009555                                                    N/A                 ShigellaflexneriMNFIRQGLGIALQPELTLKSIAGELCSVPHEPTFYRQISLLTKEKPVEGSPLFLLQMCMEQLVAIGKI
1832031..1832681                   hypothetical protein; MC63_009560                                                    N/A                 ShigellaflexneriMAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSRVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
complement(1832735..1832989)       PHAGE_Synech_S_CAM9_NC_031922: head morphogenesis protein; MC63_009565; phage(gi100068)     1.02e-06            ShigellaflexneriMARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
complement(1832989..1834119)       PHAGE_Entero_phiEcoM_GJ1_NC_010106: ribonucleotide reductase beta subunit; MC63_009570; phage(gi161617990)     0.0                 ShigellaflexneriMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
complement(1834353..1836638)       PHAGE_Cronob_vB_CsaP_009_NC_048664: hypothetical protein; MC63_009575; phage(gi100009)     0.0                 ShigellaflexneriMNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
1836637..1836816                   hypothetical protein; MC63_009580                                                    N/A                 ShigellaflexneriMYVVPVFGILSAIVSCRLPVVREAANTIYRGYVWDSLQDSVKMTLLQVHNFVDNSGRKK
complement(1837264..1837961)       PHAGE_Entero_P1_NC_005856: InsA; MC63_009585; phage(gi46401643)                      9.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
1838111..1838377                   hypothetical protein; MC63_009590                                                    N/A                 ShigellaflexneriMRIIFLRKEYLSLLPSMIASLFSANGVAAAIDLCQGYDIKASCHASRQSLSGITQDWSIAWICPYISRHLLSLNPLQARCRRYSRCER
complement(1838302..1839575)       PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_009595; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSQREYLRQRACNGLSDNRCLEI

#### region 6 ####
1959353..1960279                   PHAGE_Bacill_G_NC_023719: gp245; MC63_010180; phage(gi593777701)                     8.53e-28            ShigellaflexneriMIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSELGGHLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVVNTQGQPCGTLHFQDLLVEA
1960284..1961015                   osmoprotectant uptake system permease; MC63_010185                                   N/A                 ShigellaflexneriMKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIALILYGVLPILQVTLAGLGAIDPSVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQHAK
complement(1960996..1961103)       hypothetical protein; MC63_010190                                                    N/A                 ShigellaflexneriMRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG
complement(1961163..1961664)       MerR family transcriptional regulator; MC63_010195                                   N/A                 ShigellaflexneriLSSQIKHSPGNPGRFSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLARPLAQSTTPTIRRPYIAGVVRKSNLRPTAATHQLARTRPYFPTRYLA
complement(1961661..1962874)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; MC63_010200; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(1962930..1963181)       transcriptional regulator; MC63_010205                                               N/A                 ShigellaflexneriIGLPLIPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKCWIDNGVQVSKVKILLSNENVDVQNVWRDQQETLLTYLQS
1963144..1963163                   attL                                                                                 N/A                 CACGCGCGTAACGTGACAGG
complement(1963202..1963999)       PHAGE_Entero_phiP27_NC_003356: putative integrase; MC63_010210; phage(gi18249865)     8.68e-140           ShigellaflexneriMSVKLRLPQFQFATDNGYTSGNPFNGLTPLKKSKIEPDPLTRDEFIRFIEACRHQQTKNLWIIAVYTGIRHGELVSLAWEDIDLKARTITIRRNYTKLGEFTPPKTDAGTGRTIHLVQPAIDALKSQAEMTMLGKQHSVEVKQREYGRSTVHKCTFVFSPQVIKQRQFSGPHYKVDSIRESWTSILKRAGLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNRRLSESVPCMPHKKAG
1964038..1965194                   PROPHAGE_Escher_CFT073: transposase insF; MC63_010215; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKGNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1965235..1966974                   PHAGE_Escher_pro147_NC_028896: tail fibers protein; MC63_010220; phage(gi971753729)     5.88e-165           ShigellaflexneriSARDAGTSASEAATNATDAAGSARAASTSAGSAASSASSASASKDEATKQASAAKGSATTASSKATESAGSATAAAQSKSAAESAAMRAETAAKRAEDIADVVSLEDASTTKKGIVQLSSATNSASESLAATAKAVKVVMDETNKKAPLNSPALTGTPTTPTAPKGTNNTQIASTAYVMAAIAALVDSSPDALNTLNELAAALGNDPNFATTMTNALAGKQPKDATLTALAGLATAADRFPYFTGNDVASLATLTKVGRDILAKSTVAAVIEYLGLQETVNKADNAVQKTGDTLSGGLTFENDSILAWIRNTDWAKIGFKNDSDADTDSYMWFETGDNGNEYFKWRHRLAGGQLKELMNLKWDSLNILVNAVINGCLGIGTTNALGGNSIAFGDNDTGLKQNGDGLLDVYANGQHVFRFQNGVAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
1966977..1967522                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; MC63_010225; phage(gi18249919)     1.58e-94            ShigellaflexneriMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
1967546..1968960                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; MC63_010230; phage(gi18249920)     1.12e-106           ShigellaflexneriMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGGLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGSHTEAHDWDRWGFQCPVLPPERIHPHNFSLRDVQSIHYRGHIAPCPGCRMHMSLAQCPGFLFAHRGA
1968911..1969534                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_010235; phage(gi18249921)     8.27e-100           ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFAWNGRTWNADSSSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVE
1969534..1969713                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; MC63_010240; phage(gi849255281)     4.26e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1969714..1971357)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; MC63_010245; phage(gi169257209)     2.46e-05            ShigellaflexneriMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPEFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(1971673..1972299)       class I SAM-dependent methyltransferase; MC63_010250                                 N/A                 ShigellaflexneriMYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
1972398..1972667                   PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; MC63_010255; phage(gi428782810)     2.77e-25            ShigellaflexneriMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
complement(1972783..1973031)       PHAGE_Entero_cdtI_NC_009514: hypothetical protein; MC63_010260; phage(gi148609412)     4.06e-53            ShigellaflexneriMRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
1973257..1973276                   attR                                                                                 N/A                 CACGCGCGTAACGTGACAGG
complement(1973259..1973324)       MerR family DNA-binding transcriptional regulator; MC63_010265                       N/A                 ShigellaflexneriMALYTIGEVALLCDINPVTLRA
complement(1973429..1974757)       PROPHAGE_Escher_MG1655: IS4 transposase; MC63_010270; phage(gi16132099)              0.0                 ShigellaflexneriMHIGQALDLVSRYDSLRNALTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA
1974983..1976668                   PHAGE_Entero_YYZ_2008_NC_011356: putative 2-component sensor protein YehU; MC63_010275; phage(gi209427798)     0.0                 ShigellaflexneriMYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA

#### region 7 ####
complement(2104880..2105577)       PHAGE_Entero_P1_NC_005856: InsA; MC63_010895; phage(gi46401643)                      9.80e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRACNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAVRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
2105620..2105632                   attL                                                                                 N/A                 TGGCAGCATTACC
2105627..2106625                   YeeE/YedE family protein; MC63_010900                                                N/A                 ShigellaflexneriMTRFCLTGGFRDMYIAKNNRMFYALLIAISAQSVGVFALIQAGLLTYEAGAFPWLGTVIGGYLFGLGIVLAGGCATGTWYRAGEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYTTEHNSIAETFNLSVWPLVTVLLVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLSEATGRMFGLGVTSPTANILQFLVAGDVKYINWGVFLVLGIFVGAFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN
2106639..2106866                   hypothetical protein; MC63_010905                                                    N/A                 ShigellaflexneriMAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATEAIPQWAAEEGHAITDYQQIGDAAWSITVQKA
complement(2106909..2108333)       exodeoxyribonuclease I; MC63_010910                                                  N/A                 ShigellaflexneriMTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWQEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV
complement(2108442..2109715)       PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_010915; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRGARAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSQREYLRQRACNGLSDNRCLEI
2109851..2110879                   PHAGE_Stx2_c_1717_NC_011357: integrase; MC63_010920; phage(gi209447127)              0.0                 ShigellaflexneriMAISDTKLRTIYGKPYSGPQEVADADGLSVRISPKGVIQFQYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQCLDYWFDNYVSTTLREKAALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEEKDNPRRARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERSRASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFEQIKPFLEKAMTMYNDVLFPGEVSAPSATSCENCPVWQQSRPSILMDTNDEFPDNKRYSLLPFLFA
2110827..2111501                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; MC63_010925; phage(gi209447151)     3.30e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQTLQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
2111498..2111845                   PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_010930; phage(gi209447152)            6.23e-53            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGSAWQHPKRTERPGIRI
2111865..2113466                   PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_010935; phage(gi209447153)            0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLSFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
2113500..2113886                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; MC63_010940; phage(gi41057343)     3.35e-90            ShigellaflexneriSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNELENRYWKNSNSVASFC
2113892..2113957                   PHAGE_Entero_Sf101_NC_027398: hypothetical protein; MC63_010945; phage(gi849122281)     1.41e-08            ShigellaflexneriSYLREAVEGWILNGGVNQKCS
complement(2113938..2114231)       PHAGE_Stx2_c_1717_NC_011357: integrase; MC63_010950; phage(gi209447127)              1.35e-65            ShigellaflexneriPGEDINKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTLVTRLSEMNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKLFWHIRSISD
complement(2114263..2115864)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_010955; phage(gi209447153)            0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAEKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(2115884..2116231)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_010960; phage(gi209447152)            6.23e-53            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGSAWQHPKRTERPGIRI
complement(2116228..2116902)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; MC63_010965; phage(gi209447151)     3.28e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFALDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQTLQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
2116972..2117271                   hypothetical protein; MC63_010970                                                    N/A                 ShigellaflexneriMGRLRHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLDNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK
2117443..2117772                   hypothetical protein; MC63_010975                                                    N/A                 ShigellaflexneriMETTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK
2117938..2119147                   PHAGE_Stx2_c_1717_NC_011357: putative transposase; MC63_010980; phage(gi209447180)     1.15e-59            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWVSCVSSTGADRYAANYILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRMHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTNVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
complement(2119325..2120002)       hypothetical protein; MC63_010985                                                    N/A                 ShigellaflexneriMQLPVKLLMSLISLVSVIARAGKYKNYIRDEIKYWRYTSYKGGKFPEGFTDEKFSSAIYNGRIFTMKRLHTLMLFLAVLFTGFNVEAASVKQALSCDPNARAEQPGACPTTYELYEGDAAYKAALDKALKPVGLSGMFGKGGYMDGPGGNVTPVTINGTVWLQGDGCKANTCGWDFIVTLYNPKTHEVVGYRYFGLDDPAYLVWFGEIGVHEFAYLVKNYVAAVN
complement(2120138..2121208)       PHAGE_Rhodot_RM378_NC_004735: hypothetical protein; MC63_010990; phage(gi30044012)     8.53e-09            ShigellaflexneriMSTEMKTGLVLSGGGAVGAYQAGVVKALAECDTQISMVSGASIGAFNGAIIAASPDLSEAAVRLEALWDHLGNNQVLSVNRLVYFSLLKKLFQAMNLCQIPGRAGALLTTLLRHISILNGFDNLMAQPLLSDEPLTALLDHYLDTDALADGLPLYVSLYPTEGGMQDIIDCIRAELGAGTTKNAVFQHIQSLPRGQQKEALLASAALPLLFRPREVQGTMFGDGGMGGWRNMQGNTPVTPLVDAGCNMVIVTHLSDGSLWDRQAFPDTTILEIRPRKRLKYAGDGDNSGGLLSFTLAHTDAWRQQGYEDTMLTMEHIRKPLAARQVLSRSETVLQKSLEITEEADLALRNAMARIK
complement(2121205..2122110)       chemotaxis protein; MC63_010995                                                      N/A                 ShigellaflexneriMTSPFIQQIADNRVCQVLTCLPEKFVVDFANGIDVAQEHIRTAGERTFFRRLKEGLTGEGAARQNAINASVAQGVEASLRWLTELTTSLATTNYAITRVNDRVSSLVSDTARLAHYSADTREQLLILADQVHHKLNHLEEKLHRVDQVQRAQLHLEQIFSWWSAGRYASFSPAGRCYVALEELRWGAFGDVIRQGETGQVNQLLDILRHKALTQMAQESGGSATVRLNTLDWLGGQGREQADNEWHDAINWLGDWCSEEQHPVIWSTTQAAEHLPVRMPRLCSAERLSESMVDEIFQKGAA
complement(2122107..2123062)       hypothetical protein; MC63_011000                                                    N/A                 ShigellaflexneriMAMEEIDARTRELLTGSAPHWKRSMTISEAVNAKNSKCWRKKIQRSPGRETHSLSFTIFSEPEISMTGCGTLIRTAPKNSVIAGKPLNRKSNRPPACTERLKHSSGLSWRKSSAGLKQVFVARPCTPQKTLPVASIPAWRMRALPKSVFRQSVSYKPGSRKQIVRLWRKERRPSPVAVGSVVYGERFVERLAPVTGAGKPIKRMAAVLSISTPSGRKLCHPGHISGSCRHPLSRILTSPSARKSMPFSAHSGRKLNNCVTRFRALKIINAISRHRNGLPGDFRHMKGFLSSLLTVRRGKSWRQCCGA
complement(2123352..2124508)       PROPHAGE_Xantho_33913: ISxac3 transposase; MC63_011005; phage(gi21231087)            3.50e-08            ShigellaflexneriMSRKTQRYSKFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
2124572..2125252                   PROPHAGE_Escher_CFT073: transposase insF; MC63_011010; phage(gi26249410)             6.71e-169           ShigellaflexneriTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2125293..2126477)       hypothetical protein; MC63_011015                                                    N/A                 ShigellaflexneriMHEKNITLLCDEADRLLQLSINLLRQMVDEPDVLSDGKNENGQLFDKQKALKRIKELEGEQIKTARREMVLAVVGTMKAGKSTTINAIVGQEILPNRNRPMTSVPTLIRHVPGKTEPVLHLEHIQPVRNLLITLQEKVATPAGQQVAQTLQQTGDTRELLDILTDDGWLKNEYHGEEGIFTGLASLNDLVRLAAAMGSEFPFDEYAEVQKLPVIDVEFSHLVGMDECQGTLTLVDTPGPNEAGQPQMEVMMRDQLQKASAVLAVMDYTQMNSKADEEVRKELNAIADVSVGRLFVLVNKFDEKDRNGDGADAVCQKVPAMLNSDVLPASRVYPGSSRQAYLANRALHELRKNGTLPVDEAVDDFVREAFGRMKKDYVCKDSELATEGATDLWE
complement(2126687..2127130)       hypothetical protein; MC63_011020                                                    N/A                 ShigellaflexneriMNPSDAIEAIEKPLSSLPYPISRHILEHLRKLPRHEPVPGIMGKSGAGKSSLCNALFQGEVTPVSALMTVLPGHAAIPLMTRLQDELRTESVRTQTREQFTGAVDRIFDTAESVCVASVVRTALRAVRDTVVSVARAVWNWIFFLTR
2127645..2128487                   hypothetical protein; MC63_011025                                                    N/A                 ShigellaflexneriMKKELFGRCPFDLDEDVKKIAAINKYIHAKFEEHKNKIDNLKGVEQKLMVLQYFNVLNELSNQAISSLNIGAFSASEVLARVIIEQAANQFYIAIDDGENAQALLKASKKLVHSNGKRWLECLKSKGMTNPAANERIRMGKELTDLFNRLWPNTPEYPGTRKLFELIGWETHYHAHYVPLCDSIHTFSDDMVNIVSLYNAIQSDETTAIEFILAVKQENKRLAIYNFVIATALRCEALVNVFNSLGYQDIITEMTPTIDTVNQTIIRYDDFDHSRIDDCQ
2128525..2128857                   integrase; MC63_011030                                                               N/A                 ShigellaflexneriIVDLFSLLRDNHTQISHIAGDLNMKTSPWNKDRTIGQKRPLQISHIWGIRIRLELEGKTRDLALFNMALDSKLRGCDLVKLKVSDAAYGSSVSSRATVLQQKTGSPVQFEM
2139661..2139673                   attR                                                                                 N/A                 TGGCAGCATTACC

#### region 8 ####
2133101..2133112                   attL                                                                                 N/A                 ATTGGGTAATGA
2141819..2142987                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; MC63_011120; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(2143094..2144356)       PROPHAGE_Escher_CFT073: prophage P4 integrase; MC63_011125; phage(gi26248270)        0.0                 ShigellaflexneriMSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHLELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGSELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNKFIP
complement(2144518..2144593)       tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
complement(2144694..2145491)       protein MtfA; MC63_011135                                                            N/A                 ShigellaflexneriMIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVALAERFLQQKRLVPLQGFELNSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFISLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH
2145585..2145674                   tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGGAGTGGGGGCAACTCCACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
2145644..2145674                   attL                                                                                 N/A                 ACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
complement(2145727..2146320)       PHAGE_Salmon_ST64B_NC_004313: Integrase protein; MC63_011145; phage(gi23505472)      6.70e-74            ShigellaflexneriHVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK
2146383..2147539                   PROPHAGE_Escher_CFT073: transposase insF; MC63_011150; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIRVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2147508..2147589)       LysR family transcriptional regulator; MC63_011155                                   N/A                 ShigellaflexneriGTLRCTGNSGHYHLFFFAAIYFSLA
complement(2147579..2148019)       PHAGE_Salmon_ST64B_NC_004313: Integrase protein; MC63_011160; phage(gi23505472)      3.51e-45            ShigellaflexneriMGRRRKNPEHEKLPPNVYPNKYSYVWKPTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVE
complement(2148019..2148222)       PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; MC63_011165; phage(gi422936643)     1.50e-06            ShigellaflexneriMSSLFLTEDELLILTGCKYASHQRKWLMENGLPFYTNRSGKPIVSRELFTCNKTLPPHEVEPNFGAI
complement(2148281..2148595)       PHAGE_Entero_mEp460_NC_019716: putative exonuclease; MC63_011170; phage(gi428782342)     2.21e-40            ShigellaflexneriMLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALDDARYQAKYVSAIWQKLIPSQADF
complement(2148625..2149322)       PHAGE_Entero_P1_NC_005856: InsA; MC63_011175; phage(gi46401643)                      9.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
2149393..2149809                   PHAGE_Escher_Av_05_NC_025830: hypothetical protein; MC63_011180; phage(gi730985110)     6.50e-32            ShigellaflexneriMTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN
2150022..2150201                   hypothetical protein; MC63_011185                                                    N/A                 ShigellaflexneriMKNALQFLFVAFWLFASCMPIIFTARYMEKIDVLILMFGHINALFLGVFMAVMCIEYWR
complement(2150176..2150359)       hypothetical protein; MC63_011190                                                    N/A                 ShigellaflexneriMLTGAFLYLPFGVHADRPQAPAVILLNDFPANRFCPAQISNTNSVRCIYRQYSMHMA
2150404..2150616                   PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923: hypothetical protein; MC63_011195; phage(gi100072)     4.43e-40            ShigellaflexneriMLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRAGQTEVAVFTAYEPEE
complement(2150591..2150843)       hypothetical protein; MC63_011200                                                    N/A                 ShigellaflexneriVPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQKKQNPPKRVKCGCVEDAHISGGEGFLPRRVSYSSGSAVA
2150784..2151062                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; MC63_011205; phage(gi401817580)     1.40e-13            ShigellaflexneriMAHDTKFYNSDNSAAPASRHGRRSHAFKSDWYQHDPCTEEQAEWLIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR
2151064..2152122                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; MC63_011210; phage(gi428782365)     1.40e-109           ShigellaflexneriMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHMKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTSTSILKQRTKNLAPLPHAHQQQNPPQEETVVSIAVDPESPAQYLQRQKPQREEMPVYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHNELHAGVKDFEEKHGSQLLLLIRFLMHARNSGVLKWKA
2152123..2152488                   PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; MC63_011215; phage(gi985761276)     3.78e-51            ShigellaflexneriMTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLNLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVRGQLVPGGRLGIKITELGCA
2152485..2153195                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; MC63_011220; phage(gi169257244)     3.63e-97            ShigellaflexneriMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGTSIPLVSPVEFSTSSWRRAVLSLEEHHKAWLLWCYSGSICWEYQIAITQWAWNEFNAQSGTRKIAGKTQERLKKLIWLAAQAVKAELFGGEGYEYQVGGEGYEYQELALLAGVTTKNWSKTFTGHWVVMKHIFHRLDSEALLFVMRTRSKKRRHFQSKVLQK
2153230..2153351                   antiterminator; MC63_011225                                                          N/A                 ShigellaflexneriLPILYVMAKANKTRPQAGFLCHLSRIDMVNALVEEIRVIFGA
2153394..2153469                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
2153471..2153547                   tRNA                                                                                 N/A                 CCGCCACTAGCTCATCAGGAAAGAGCGTCAACCCTTTAAGTTGAGTGTGCGAGGTTCGAGTCCCCGGTGGCGGTCCA
2153550..2153625                   tRNA                                                                                 N/A                 GCCGACTTGGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
2153629..2153703                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
2153996..2154211                   PHAGE_Escher_ArgO145_NC_049918: tail assembly protein; MC63_011250; phage(gi100053)     7.84e-35            ShigellaflexneriMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGSLVLGFLTYLTNLYFKIREDKRKAARGE
2154310..2154984                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: minor tail protein; MC63_011255; phage(gi100055)     3.30e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
2154981..2155328                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail tip protein; MC63_011260; phage(gi100054)     6.23e-53            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGSAWQHPKRTERPGIRI
2155348..2156160                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; MC63_011265; phage(gi100053)     1.90e-68            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDT
2156226..2157382                   PROPHAGE_Escher_CFT073: transposase insF; MC63_011270; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNTPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2157425..2158216                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; MC63_011275; phage(gi100053)     1.43e-118           ShigellaflexneriTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
2158216..2158737                   PHAGE_Entero_cdtI_NC_009514: lysin; MC63_011280; phage(gi148609440)                  8.16e-111           ShigellaflexneriILTLRTSRGAYSLRKAVAVAIGGGAIAIASVLITGPGGNDGLEGVSYIPYKDIVGVWTVCHGHTGKDIMLGKTYTEAECKALLNKDLATVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSMLLRKINGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ
2158734..2159198                   PHAGE_Entero_DE3_NC_042057: hypothetical protein; MC63_011285; phage(gi100031)       7.04e-96            ShigellaflexneriMSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNARELKLANATITDMQQRQRDVNALDAKYTKELADAKAENETLRADVAAGRRRLHIKAVCQSVREATTASGVDNATSPRLADTAERDYFTLRERLMTMQMQLEGAQEYIRTQCIK
2159241..2159591                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_011290; phage(gi18249898)     2.18e-79            ShigellaflexneriMPSLIPRACRKRGCAGTTTDSSGYCDKHRGEGWVQHQRGLSRHQRGYGSKWTVIRARILKRDKGLCQLCLRVGVVSEAKTVDHIIPKAHGGTDADSNLQSLCWPCHKAKTARERIR
2159739..2160221                   PHAGE_Entero_mEp235_NC_019708: terminase small subunit; MC63_011295; phage(gi428781811)     9.98e-84            ShigellaflexneriMSGPPKTPPRLHLIRGNPSKRPVKDAKKTAKKDEKGLPKIPQHLGAQGKYWFRRMAEELNAEGIISQLDARALELLVEAYTEYRHHCETLDVEGYTYRTETQNGDVLIKAHPAAAMKADAWKRIRAMLAEFGMSPASRVKVNIAGPDDVDPLAELLKARD
2160221..2161978                   PHAGE_Entero_phiP27_NC_003356: putative terminase; MC63_011300; phage(gi18249900)     2.70e-113           ShigellaflexneriMAKVADGIRYAERVVAGEIVAGEFVRLACQRFLDDLKYGEEWGIYFSEPRAQHILNFYKFVPHVKGALAGQPIELMDWHVFILINIFGFVIPLVNEETGEVVMRSDGSGRPVMVRRFRTAYNEVARKNAKSTLSSGIGLYMTGADGEGGAEVYSAATTRDQARIVFEDAKNMVRKARSTLGRLFDFNKLAIYQEQSASKFEPLSSDANNLDGLNIHCAIIDELHAHKTRDVWDVLETATGARLQSLLFGITTAGFNKEGICYEQRDYAIKVLRGYNSDVEGAVKDDSYFAIIYTLDEGDDPFDETVWQKANPGLGICKRWDDLRRLAKKAKEQVSARVNFFTKHMNVWVTAESAWMDMIKWEKCEYIAPRHELKTYPMWVGVDLAHKIDICAAAKLWRTDNGHVHADFKFWLPEGRLERCSRQQAELYRKWAEMDKLILTDGDVIDHAQIKSDLLEWIGGENLRELGFDPWSAMQFSLALAEEGIPLVEVPQTVRNLSEAMKETESLVYAGRFHHSNHPVMNWMMSNVTVKPDKNDNIFPNKSTPEAKIDGPVAMFTAMSRMLVNGGEPEPDLSEHLVSVGIRSL
2161990..2162172                   PHAGE_Entero_phiP27_NC_003356: putative integral membrane protein; MC63_011305; phage(gi18249901)     3.57e-18            ShigellaflexneriMFLIILTPLAGVLGALLLSYGTWLIYPPAGFVVAGALCLCWSWLVARYLDRGHRVASGGE
2162172..2163413                   PHAGE_Entero_phiP27_NC_003356: putative portal protein; MC63_011310; phage(gi18249902)     0.0                 ShigellaflexneriMFFQGLFQRKNNTPVTTPGMLAEELGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISGTLKTRAVDERLHKLISAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALGEVVELLPIDPGCVEPKLNSQWQPVYQVTFPDGSVDVLTQDEIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYERMKRDFEERHLGLGNAHRPMILEMGLDWKPVALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTKPSDGSKAGKQKDNANADETTS
2163355..2165121                   PHAGE_Entero_phiP27_NC_003356: putative major capsid protein; MC63_011315; phage(gi18249904)     0.0                 ShigellaflexneriMAVKPVSRRITPMQTKQRLDVPLSLKSVSDSGEFEGHGSVFGVKDSHDDVVMSGAFAASLRAWSDRKALPALLWQHRMDEPIGVYTEMKEDDVGLYVRGRLLIDDDPLAKRAHAHMKAGSLTGLSIGYVLKDWEYDRSKEAFLLKEIDLWEVSLVTFPSNDEARISDVKNALARGEIPEQKKIERVLRDVGLSRTQAKAFMAGGYGALSLRDAEDVGSALNGEVETLNGKLTELENLKSDLEAELAEVKRPAGGTQNKVAGEHKEAFIGFMRKGREDGLRELERKALQVGNDEDGGYAIPEELDRTILTLLKDEVVMRQEATVITLGGSDYKKLVNLGGTTSGWVGETEARQETATSKLGLIEPFMGEIYGNPQATQKMLDDAFFNVEDWINSELALEFAEQEEIAFTSGDGSKKPKGFLAYESTDEDDKTRAFGKLQHIASGAASGVTADAIIKLIYTLRKAHRSGAKFMMNNSSLFAIRLLKDNDGNYLWRPGIELGQPSSLAGYGIVENEQMPDIAADAKAIAFGNFKRGYTIVDRIGTRILRDPYTNKPFVGFYTTKRTGGMLVDSQAIKLMKIGAATRQKAAA
2165166..2165489                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_011320; phage(gi18249905)     4.05e-73            ShigellaflexneriMLLKEEEIKSHLRLDDGLYSDGDFLKLLAQAVQKKTETYLNRKLYAPEETIPEDDPDGMHLTDDVRLAMLMLVSHFYENRSTITDVEKLETPMSFRWLAGPYRIVPL
2165486..2165902                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MC63_011325; phage(gi23505454)     5.09e-61            ShigellaflexneriMKIRQSQTSATYLLPDPGELNRRIKIRLRVDEPTADFGTEPTYPESFDVWAKVAQPGAAAYQGSVQTENIVTHYFTIRFRHDITADHEVVYYGQEYRIRRIRDLNGQRRFLLLECEELRTARRRGECHESDSIFTRRL
2165868..2166392                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_011330; phage(gi18249906)     4.96e-122           ShigellaflexneriMNQTAFLHVDFKQPEELEFNRARLRRAFVQIGRVYMRYARRLVIKRGRSGPGENPGYQTGRLARSIGYYVPKKTTRRPGLMVKISPDQKNGQGNRRFPEGAPYYPAFLYYGVRHSAYGMDKKDKRQKKHHSSTFRLAPRNNFMADVIERQRHWTQELLSSELQRSLRPVKRKHK
2166389..2166951                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_011335; phage(gi18249907)     1.24e-107           ShigellaflexneriMKLTTIIAALRERCPRFEERVGGAAQFKAIPDAGKLRLPAAYVVPSDDAPGEQKSQTDYWQDLTEGFSVIVVLSNERDEKGQWAAYDAVHDVRRELWKALLGWMPDPQGGEIVYVGGTLLDLNRYELYYQFDFTAKYEITEEDTRQAEDVNACRIYPCVLMWITSILVLARMVTLSTIWKCVSLRIAA
2166961..2167122                   PHAGE_Entero_SfV_NC_003444: hypothetical protein; MC63_011340; phage(gi19549000)     6.09e-21            ShigellaflexneriMFVKPLKGRSVPDPARGDLLPSEGRNVEESSYWFRRIAAGDVVRVKQDKAKKS
2167119..2168615                   PHAGE_Entero_phiP27_NC_003356: putative sheath protein; MC63_011345; phage(gi18249908)     0.0                 ShigellaflexneriMTISFNTVPSNTLVPLFYAEMNNSAANTAVTSAPALLIGHASNDAAIEVNSLVLMPSADYARQICGAGSQLARMVEVYRQTDPFGELYVIAVPEARGAAATVRVTVAGEAEESGTLSLYVGRSRVQVPVVNGDDATAVATAIKEAVNGVITLPFTASSDAGVVTLTARHKGLYGNELPVCLNYYGSGGGEILPAGLRVVTEVGAAGSGAPDLTAAVAAMGDEAFDFIGLPFNDAASINMMMTEMNDSSGRWSYARQLYGHVYTAKLGTLSELVGAGDMHNQQHITLAGYEKETQSPVDELVASRLAREAVFIRNDPARPTQTGELVGMLPAPKGKRFIMTEQQTLLSHGVATAYVEGGTLQIQRSVTTYKKNAYGVADNSYLDSETLHTSAYVLRKLKSVITSKYGRHKLANDGTRFGPGQAIVTPAVIKGELLATYRQMERAGIVENYDLFKQYLIVERDADNPNRLNTLFPPDYVNQLRVFAVVNQFRLQYSEESA
2168615..2168971                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_011350; phage(gi18249909)     1.15e-83            ShigellaflexneriMAKIAGTCFFKVDGQQLSLTGGIEVPMNTNVRDDIVGMAGDVDYKETWRSPYVKGTFKVPKNFPVDKITTSDQMTITAELANGMVYVLSAAWLHGEANHNAEEGTADLEFHGEEGGYQ
2168977..2169307                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_011355; phage(gi18249910)     1.27e-64            ShigellaflexneriMNVTEIVLKKPVTAHNEMLHVLELREPTYDEIEALGFPFIISGEGSIKLDSQVALKYIPLLAGIPRSSAAQMAKLDIFKTSMQILRFFTQSETGSTSGKRLYNVAWFWKLA
2169392..2171341                   PHAGE_Entero_phiP27_NC_003356: putative tail protein; MC63_011360; phage(gi18249911)     0.0                 ShigellaflexneriMTDSFQLKAIITAVDKVSAPLKGMQRQLKGFKKEFASLSLGAAGAGTAVLGALALPVKSAIALESKMADVRKVVDGLDTPEAFKAMTEQVRDLSTELPMSAEGIAEIVAAGGQAGIARDELMQFTDDAVKMGVAFDATAEESGQMMAQWRTAFKLTQGEVAGLADKINYLGNTGPASAKKISDVVTRIGPLGSVAGVASGEIAAMGATIAGMGVESEIAATGIKNFMLSLTARDSATKSQKKVLRSLRISPKKLAADMQKDARGAMLHVLDSLAKVPKEKQAAVLKALFGKESLGAIAPLLTNLDLLRTNFNRVADAQQYGGSMQKEYAARAATTENQLLLLQNQINAISSTLGETFLPSLNEGIKEMKPFLEEVRTFVRENPEVVKTIAKTGAALLTMGVAIGTLTRITKIMGSVMNMTPAKGLIALLVGGAYLIIDNWETVGPVVKKVWQEVDQVVRAMGGWEQAVKTIATVSALYIGVKAVASIRAATVAQNQWTTAAGKTGLKLKGLGKISLIGGLLELGMMAQEFEKEHPWLVKNFVADALNSGFGLNDKFDEWGKQFHDFVYDMTGWQMPRGDGYLSPDKRYTPNVSLERNQLLSLASSPATRSELKVTFDNAPPGMRVIDLPKTGDPFMKITHDVGYSPFKR
2171467..2172164                   PHAGE_Entero_P1_NC_005856: InsA; MC63_011365; phage(gi46401643)                      7.81e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRSLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
2172180..2172499                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; MC63_011370; phage(gi730985065)     2.77e-05            ShigellaflexneriYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGSHTEAHDWDRWGFQCPVLPPERIHPHNFSLRDVQSIHYRGHIAPCPGCRMHMSLAQCPGFLFAHRGA
2172450..2173073                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; MC63_011375; phage(gi18249921)     8.27e-100           ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFAWNGRTWNADSSSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVE
2173073..2173252                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; MC63_011380; phage(gi849255281)     4.26e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2173253..2174896)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; MC63_011385; phage(gi169257209)     2.46e-05            ShigellaflexneriMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPEFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(2175212..2175838)       class I SAM-dependent methyltransferase; MC63_011390                                 N/A                 ShigellaflexneriMYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
2175937..2176206                   PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; MC63_011395; phage(gi428782810)     2.77e-25            ShigellaflexneriMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
2176584..2176614                   attR                                                                                 N/A                 ACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
2184551..2184562                   attR                                                                                 N/A                 ATTGGGTAATGA

#### region 9 ####
complement(2210859..2211064)       integrase; MC63_011620                                                               N/A                 ShigellaflexneriMAENNQDQVSILNQKLSEFAPSMPHAVGSDIIKQASTGYTTYTCIDITSYAATSLLRTIPICIETGA
complement(2211028..2211207)       PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage integrase; MC63_011625; phage(gi169257156)     9.57e-05            ShigellaflexneriMCIQGALAWQEIKAGTIMIRRNPRLTNEFTLPGSKAKTKHVIAFTDRGWQKTTRIRYPF
2211284..2211616                   PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; MC63_011630; phage(gi311992758)     1.01e-09            ShigellaflexneriMNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRSAPH
2211785..2212336                   protein YbcL; MC63_011635                                                            N/A                 ShigellaflexneriMKKLIVSSVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVYDPDAPTGSGWWHWTVANIPATVTYLPTDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
2212346..2212948                   AraC family transcriptional regulator; MC63_011640                                   N/A                 ShigellaflexneriMLAKDKSNLKIEEIRMHKHHEIHKVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIVNYPEAGLYLAEMLYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPRTKWTANKVARYLYISVSTLHRRLAS
2213005..2213702                   PHAGE_Entero_P1_NC_005856: InsA; MC63_011645; phage(gi46401643)                      8.90e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHAWRESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
2213719..2213919                   AraC family transcriptional regulator; MC63_011650                                   N/A                 ShigellaflexneriASEGISFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFKITPRELRKASRE
complement(2214076..2214301)       hypothetical protein; MC63_011655                                                    N/A                 ShigellaflexneriITLYFLGRFNAPFLIILSEQLTYQLDLITTISVPNLISNVISIPLIIPSTSCKFPTLELHIVQTPDAKKITRASLA
complement(2214408..2215490)       porin OmpD; MC63_011660                                                              N/A                 ShigellaflexneriMKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYVRLGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNNDFFGLVDGLNFAAQYQGKNDRTDVTEANGDGFGFSTTYEYEGFGVGATYAKSDRTNDQVIYGNNSLNASGQNAEVWAAGLKYDANNIYLATTYSETQNMTVFGNNHIANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDLGAWGDQDLIEYIDVGATYYFNKNMSTFVDYKINLIDKSDFTKASGVATDDIVAVGLVYQF
complement(2215818..2216385)       PROPHAGE_Escher_Sakai: putative transposase; MC63_011665; phage(gi15834436)          5.67e-17            ShigellaflexneriILFQEGVSVKLRLPQCADFEAELVEMDGEPEHVHLLINYPPKLAISSLVNKQPQRRIGVTATGSARYCCQVLPQRCFVASRLFCQLRRCANIRHPPIHTTANTWSGEKTSLISPPRTGFYGALDKPGDYLHLHGHHCTMPRTCPITSSTSKYSLANHYASQFVSSILRKKNRTNIKRRYIAYIA
2216406..2217562                   PROPHAGE_Escher_CFT073: transposase insF; MC63_011670; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIRVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2217605..2217760)       PROPHAGE_Escher_Sakai: putative transposase; MC63_011675; phage(gi15834436)          1.08e-26            ShigellaflexneriIILWSVKKTDIRRGRHCVFLMHAHRVFVTKYRRQIFDHDATEKLRTYFSNVC
2217768..2218073                   PROPHAGE_Escher_Sakai: putative transposase; MC63_011680; phage(gi38704244)          5.49e-52            ShigellaflexneriVKRLQVFKFRLRPGGQQAREMRRFAGACRFVFSRTLARQNENHKAGNKDIPYAKMASLVEWKNATETQWIKDAPSQPLQQSLKDPEQACKNFFQKRSAFP
2218096..2218976                   virulence factor; MC63_011685                                                        N/A                 ShigellaflexneriMHSAIRRALSSIRKTAVFFCRNLAGCATGTAVRSRVLKMSLSASPAVSGTSVFRQKVKYQLRFTLQHQWSGWMLAWLNLPRCQMAQSLSLTVFRKTRRSWRDFSDSAARSNSATTGRSRNAKYSDCIPVSQISAGTTFTKSQRPSAKTTSLRIRSATCQSQQRVRSASRGAMSGQNQVTVRYWIRAGMKCAASLSTSSSGVAVRCLLFRQRTQASVARAVVIQRKKIACHKVNSDARYVDIQRTPMMALVTFRRGTPFLPVERWCSQAARSRNPPKFRRQPGA
complement(2219016..2219686)       PHAGE_Erwini_vB_EhrS_59_NC_048198: holin; MC63_011690; phage(gi100034)               2.80e-56            ShigellaflexneriMCGRCAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETASTSRMFKPLWQHGRAICFADGWFEWKKEGDKKSLILSIALTDNLFLWPRVAYRLSVVTKPKDFSSLRRQIKVWIFMTAARWFCRQKLHGNGCGKTLVVKKPQKSLPEAVCQQTSSPGTLCRARWVMSKTRARSFNLFVGA

#### region 10 ####
2253001..2253014                   attL                                                                                 N/A                 CGCCGCATCCGGCA
2263533..2265599                   PHAGE_Salmon_HB_2014_NC_027329: putative tail length tape-measure protein; MC63_011980; phage(gi849248426)     9.29e-84            ShigellaflexneriMSRFTVDSFIVELGFNENVIKGLQRVEKAALQSAQRIERNLNRAFKVNPKSMDKDLTASLGNMEKKINQTFNKLQERAKSTKVFKFKTQVEETVKAARQPRISGSRAITAAHSVNMSKLRDFNPMLEKYFKSQYYSLSSKSKTLGNEAFNRELAKLNQSLRETLSKFNKTTSKNNHSENASNGLDVLATSAIKAGTAIYSFQTALEAYRKIMEIGLKKEASQRAAQFVLGDEGAKRATEFVKNLADSSGVDQIETLSSFAKFSAGAGDMNADQKESLFSNVIGTSRLMGLSTDEINGILKAFEQMASKGKIQAEELRGQLGDRMAGAFQLFARSLGMTTEELDKAMKDGKVLSKDVLPKVSAEMGRMIDKASGWEKIINSTQTQLGRLSNSWNNNLALMFDGSQEGLVDFTRSLTNLLNSLGGQSKNLGEHFGDLMKSMSNGIDDLTTISYRVQGFFDRVTLAYRELNDTQKAVADGIANGLLSALKGLAGIVAVRSGIGAVGGIWNLIRAISTLGNVANTAAGRINSRSGSVEGGKGKLSVADAITRVMIVGMTTDVINSIVKPLYERQMSKSDNPIDKVVRSKVEPTDQALTGDMNSLAAVLWAMVHGKSKDVPQFSPEALNNLKGRVETFTQDLKVIKPSVNIQPQTINITTQTVLDGKVIDERTTSHINRMQEDTLISSAYPEE
2265773..2266546                   PHAGE_Escher_1_NC_041979: portal protein; MC63_011985; phage(gi100153)               3.38e-120           ShigellaflexneriMFDTKQIRYSGKDGIYFHLRDNVESFLALTATEQMDYDSPMMVTTQAMQSGQTITDNVQRAPKTISISGVVVVDSTGSVLLTRQGQLVETFISTVEQWRDQKQIITIVCRDGIAITDSIITQFKASKEHTIANGLRIQMTFQGVEFRSIVGQTDISAATGKTATTNDGGATSKKNTGNTTTSLGNGMLMCQELYNRSTSELSNEQLQARINCGRNVRVKNGKSTFSDAANEQASKVLNNAGTGSTLKKFSVNPNKRY
complement(2266561..2267406)       recombinase family protein; MC63_011990                                              N/A                 ShigellaflexneriKYRGKSSQTSVQDLLKNRSVIGYFTPKGCEEIADYYPAIIDETTFYKVQQLSYARYGRKPASDKPMAVNLFKGVIRCSECGHALIITGFSDTRNGIYRCPLRNENRCSAKGLSRKQTDGTLLTLLSRLDRFDSDTTNTIDTLKLHREHISSNIEKLVQLSLEIEDLSAITSKLKQLKNELSQVDADIEKETQRLKSIDVGCLSDCDLTTKAGRIEAQLIIKSAVKEVVLNTAKRRCKVTFHNGKVIDLPITENPSDNVTEAIQSLSEVTERGLIDVDEVII
complement(2267399..2268672)       PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_011995; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
2268696..2268720                   attL                                                                                 N/A                 TGGAGATTCAGGGGGCCAGTCTATT
complement(2268719..2269420)       PHAGE_Entero_phiFL1A_NC_013646: integrase; MC63_012000; phage(gi281416324)           3.27e-08            ShigellaflexneriMKRVISYIRFSSERQAKGDSLRRQSKMVNDWLKAHPEYYLDQDLSFRDLGVSGFTGKHLKGGLGDFLTAIEKGLVKAGDTLLIESLDRLSRQDVDQASELLRNILRSGVDVVTLSDGEHYTRESLKDPLALIKSILIMQRSHEESLRKSERIQAAWNRKKELISEGIKISKRCPAWLKLNDDRKSFSVIPEKVETVKRCFQLRLEGKSIWEIVRTLNDEGHQTLNQYKAGSFGQ
complement(2269522..2269968)       DUF72 domain-containing protein; MC63_012005                                         N/A                 ShigellaflexneriMKISGLAFNTRHVNCVEGNTTLYALPKPEVVLRWREQTTDDFRFCFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQLPATFGPRELPALWHFLDSLPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNRVIFIRHV
complement(2269981..2271252)       PHAGE_Entero_phiP27_NC_003356: putative integrase; MC63_012010; phage(gi18249865)     0.0                 ShigellaflexneriMDKVKYPTGVENHGGTLRIWFNFKGKRVRENLGVPDTAKNRKIAGELRTSVCFAIRTGSFDYAAQFPDSPNLQAFGVSKKEITVKELEEKWLDLKRMEISANAFNRYESVARTMVPKIGGGRLVSSVTKEELLYIRKDLLTGYQNSTKNKAAAKGRSVVTVNYYMTTIAGMFQFAADHGYLEANPFQGIKPLKRARAEPDPLTRDEFIRLIDACRHQQTKNLWSLAVYTGMRHGELVSLAWEDIDMKAGTITIRRNYTKLGEFTLPKTEASTNRVVHLIQPAISVLKNQAEMTRLGKQHHIKVQLREYGRSVNHECTFVFNPQVVRKSKQVGFIYKVDSIGDSWETAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASMGHASAQMVFNVYGAWMTDSNAEQIAMLNQKLADYVPWSPK
2271376..2272532                   PROPHAGE_Escher_CFT073: transposase insF; MC63_012015; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2272438..2272677                   PHAGE_Entero_c_1_NC_019706: holliday-junction resolvase RusA; MC63_012020; phage(gi428781794)     1.52e-09            ShigellaflexneriMRFSTIVSVVTLVWGISPRQPSGKNIIRWLLKKRTNGSVRYCQYTSLIDDEQFDETNIVRGLPVPGGRLGIKITELECA
2272674..2273363                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; MC63_012025; phage(gi169257244)     1.35e-94            ShigellaflexneriMNNQYLQFVREQLIIATADLSGATKGQLEAWQGNAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGASIPLVSQVAFSTSSWRRAVLSLEEHHKAWLLWCYSGSICWEYQITITHWAWEEFKAHSGTRKIAEKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTGHWVVMKHIFHRLDSEALLFVMRTRLEQKAAFSKQSIAKVD
2273540..2273615                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
2273617..2273693                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTCCGAGGTTCAAGTCCTCGGTGGTGGGCCT
2273696..2273771                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
2273775..2273849                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAGGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
2274027..2274323                   hypothetical protein; MC63_012050                                                    N/A                 ShigellaflexneriMIHHSGVVNISSDNLQNILSKPRGHTLNCLGWRFFVQRSVCVSWKSDFAWTGIMLLFRGEELAFSSAFSAVTIRKIMKCPPPGRRTVEKRTRQQKHWG
complement(2274549..2275745)       PHAGE_Escher_SH2026Stx1_NC_049919: capsid decoration protein; MC63_012055; phage(gi100066)     0.0                 ShigellaflexneriMTESSDCESVQVFIGIDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRAGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
2276009..2276410                   PHAGE_Entero_DE3_NC_042057: hypothetical protein; MC63_012060; phage(gi100042)       2.59e-49            ShigellaflexneriMAKKDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELANMDDTDIRDKSAHPENALTGHENEVISAQPETVIQNMDDLVTVVALVTLHTDALHATRDEPLAFVPPGMAFRVSAGVAAGMTERGLARMQ
2276422..2276793                   PHAGE_Entero_lambda_NC_001416: head-tail joining protein; MC63_012065; phage(gi9626253)     1.78e-35            ShigellaflexneriMADFDNLFDVALDLADKAIIRNMGIRAVITSGRLKGIMISGVFDDPENISLVAGGVRIEDSLPSLFVKTADILRLCRNDSLMIGRESFCVDRITPDDGGCSYIRLRREGLPGNVRAGRYYEGA
2276780..2277370                   PHAGE_Entero_cdtI_NC_009514: putative tail component; MC63_012070; phage(gi148609390)     8.74e-105           ShigellaflexneriMKGLENAIRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNLPAIKLNTTRRRAGEGLRVGKYFFRGAFVQQLANGRWHVLRCLPEARFATGHDHQGRLRKNRLPVEVVKIPLSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
2277367..2277766                   PHAGE_Entero_cdtI_NC_009514: putative tail component; MC63_012075; phage(gi148609391)     2.68e-17            ShigellaflexneriMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQTACRGGVAECSVHRKNDGWRLAGCSVYCRLHPGTGTGFRAGYVDGEHHFPGPECTGTFRTHRHPEPTRFLSTDGYLGDGGNHVPDHVHELA
2277777..2278517                   PHAGE_Entero_cdtI_NC_009514: putative major tail subunit; MC63_012080; phage(gi148609392)     5.40e-161           ShigellaflexneriMTTPNPLAKTKGAGTTLWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTITSKEVMTRTVKISGVGRPYLAEEGAETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVPLSGLVATVKGVQQGSVSIVGMTSDGEFVAVAAVTVSAP
2278576..2278962                   PHAGE_Entero_cdtI_NC_009514: putative tail component; MC63_012085; phage(gi148609393)     2.32e-83            ShigellaflexneriMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRKAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
2278971..2279300                   PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; MC63_012090; phage(gi148609394)     1.26e-73            ShigellaflexneriMQFVMRLAREFRRADWRQMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
2279272..2282313                   PHAGE_Entero_cdtI_NC_009514: putative tail protein; MC63_012095; phage(gi148609395)     1.87e-154           ShigellaflexneriMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVSSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGGRRARNLTVSWRRDIMPVSLSGSCGNSAGPYPGMVSRNMRQPVRWHRWWAVGHFMETILVWWRKLPHRWSDRLASRSAIPISLSGRMILMPRRRWTMRCIFLPLSLSRYASLGSRGGPVMRPGSPCLRWQRKPVNAHLILIIISMRWVVRCKPCLTGGSSSGMRPILVVKTRWMRRLMRYRKKFSARKNIRGQTPPHRWSTISSVLTIFRRKNAGRICRMQKRRQNGITRSNRNAGMLKMPRTGMKRKLHDISGKLRVLMPCSTPTRLSGMRRYSVKMNVTKKPLRKIHGQPVMMRPPGYCCSTVSSRHRWKGRLLLPDSQQALPLKGLKRINSFWPCSSASATWTGKSRQMKRVCWPVRMSFRRRCWMNSRSCRNRQRLTTEKKRFSPASWQTKNVHCVSSTIWILPLQVWGISSGSATRHSCASGRNTGNSCNSLRMTVARKALTGRRTTGGLRRCRGASDNMKTNATGRNWKWRRATGKTVPCGRFRILRRMRIMRRERQNRCLQWHSAVPVMHWRHSVPPVSILNPSPLPCCQIWPELWHRWPCRRRASVLYSASRLMLMAVFTSLLIVATVARWLTVRRFLLLQKARVWGKRDLKPFCHCVAVLMVSWGVVADTGGSGMVMFAPQYNIEINNDGTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR
2282313..2282642                   PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; MC63_012100; phage(gi148609396)     1.45e-72            ShigellaflexneriMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIREVCRKWSASVGALWVTVTADFEQVVN
2282642..2283339                   PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; MC63_012105; phage(gi148609397)     4.70e-108           ShigellaflexneriMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGAGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGVSCWRIPVCGLTVLMSVVTRAGQWLTSSTNQRRISGRTNAASVCAGVSCATIPVISAVSFPSINFLSAA
2283344..2284087                   PHAGE_Entero_cdtI_NC_009514: putative tail protein; MC63_012110; phage(gi148609398)     8.52e-167           ShigellaflexneriMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
2283985..2284624                   PHAGE_Entero_cdtI_NC_009514: putative tail component; MC63_012115; phage(gi148609399)     1.03e-17            ShigellaflexneriMAATHTLPLASPGMARICLYGDLQRFGRRIDLRVKTGLKPSAHWPHSSRRFVRNVTAGIRCALPGVMQVKPNCLPVLMSRWQMVQSTYRVWWELKVAVCFRRCWGQLLWRLLYGCRGRNYGESAVFSRCQYDAWRCCTDAGTESQNSPYTDNGRQTEHLFLLTGHGCPGQCSACSVRNARGVAGGISGDQHGRRRGWWSGCGDWSLA
2284685..2285128                   PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; MC63_012120; phage(gi148609400)     1.95e-75            ShigellaflexneriMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGTGIRRKSACWFRYSVTVAG
2285125..2288162                   PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; MC63_012125; phage(gi148609400)     6.81e-92            ShigellaflexneriVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRGMGKRRGAADVDKWRCMSSASTATSQCRTDLAARSRASPVTLTPHSVRRGMFSVISARRCAVCRYGTGRRRSCRTDRRIKCGPITAVMWCRMMARRSATASAPRTAIMSLRTGLIRTTVMRRRQSLWRTRRPLSVTVVTSRRWMPLAVPAGDRRTAPGCGLKRNCWKRRPWTSASAQKGFAMYRVMSLKSAMMIMPVSAPVVAYWRTARPGRRSTVKSRCRPPVPRAWLTEMAIRSAWRFSPSPTARKAGFLTALQNTACGGSCRRCASACSAAVSVRTTTARMPSPPCSMCRKKRPSWITGHTLTVTGAARMVSRRQRCSIPPKSPQTAGNIRCWSDGTRRRWRVASCFAPWQRTTAVSGWSAQPGRRKPHTASGSWRWGITVQSGRMPGGSRAIRRRYRSGLRHRQRLSLLNYRGIFRRWSRNWLYMTRRCSLSSGFRKSGLRISGRLKPAPAILARRCTGPPVSISGRAMIIIFTFAVTPLANRHLWRPSVGRAIMRKVIVFIKGSIKRISARSCGRRLITVSLRRTLKSGRPLRMSAMKSRKPSIKHWKIRVLQSSRYRKFRLIQIITTACGLSCNRRTDAFILRVSVPVLRIRQQECRVRCCWRQTGLRLILRMATQSRCLLVRAIRYSTTCSNARLRPLPAAVILRHFPHLADGRRKMPISAVTTRTPGRSTTSRLIRTVGFWENCPRTRLKAISLKQWANLSHGTPGHRRGGHQGPLPSGFMTISRLIGKLLFPRWRFAVLNMSGRITIFIRHAARKTVLKFITERPWIIRYIRVLLICLPVTVTRWSFLYRHGWMAGIPQQVSAICWLLRKPLQASRLAGA
2288230..2288829                   PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; MC63_012130; phage(gi148609401)     1.30e-132           ShigellaflexneriMRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
2288893..2290306                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; MC63_012135; phage(gi18249920)     7.05e-69            ShigellaflexneriMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPFIIPATATGPYPDLAGKIPQKILFTESWRALSATDGETLTLAGLLLRTREKLTVIKSSDLSGAVIQRLTTGTGGDFSAQYSHRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCTCLWRNARAFYSHIVA
2290257..2290880                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; MC63_012140; phage(gi730985066)     1.47e-43            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFAWNGRTWNADSSSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVE
2290880..2291059                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; MC63_012145; phage(gi849255281)     4.26e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2291060..2292811)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; MC63_012150; phage(gi169257209)     8.40e-09            ShigellaflexneriMLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEEQRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLTQLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPELLETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLPENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSSPDYHGPQIYFSMSDRQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
2293325..2293415                   capsid protein; MC63_012155                                                          N/A                 ShigellaflexneriMQERAAAGWTSDSASIEFPAVTDFTCLG
complement(2293428..2294701)       PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_012160; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
2294725..2294749                   attR                                                                                 N/A                 TGGAGATTCAGGGGGCCAGTCTATT
complement(2294748..2294996)       PHAGE_Entero_cdtI_NC_009514: hypothetical protein; MC63_012165; phage(gi148609412)     4.20e-53            ShigellaflexneriMRIEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(2295351..2295698)       hydrolase; MC63_012170                                                               N/A                 ShigellaflexneriSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILHAL
complement(2295725..2296921)       PHAGE_Escher_SH2026Stx1_NC_049919: capsid decoration protein; MC63_012175; phage(gi100066)     0.0                 ShigellaflexneriMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
complement(2297113..2297367)       nicotinamidase; MC63_012180                                                          N/A                 ShigellaflexneriMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPVTLFVPLIMGC
2297677..2299449                   aspartate--tRNA ligase; MC63_012185                                                  N/A                 ShigellaflexneriMRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLGGINSPVAKFLNAEIIEAILDRTAAQDGDMIFFGADNKKIVADGMGALLLKVGKDLGLTDESKWAPLWVIDFPMFEYDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN
2299567..2300019                   PHAGE_Proteu_vB_PmiM_Pm5461_NC_028762: nudix hydrolase; MC63_012190; phage(gi971741020)     5.81e-07            ShigellaflexneriMKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA
2300048..2300788                   YebC/PmpR family DNA-binding transcriptional regulator; MC63_012195                  N/A                 ShigellaflexneriMAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
2300823..2301344                   PHAGE_Bacill_G_NC_023719: gp349; MC63_012200; phage(gi593777805)                     8.26e-14            ShigellaflexneriMAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR
complement(2301346..2301657)       hypothetical protein; MC63_012205                                                    N/A                 ShigellaflexneriMGAIVARQDNFHKTSLMGRLRSKFVFDIYKEALCIPVGEIETFGQLLNSNPNAKLTFWKFWFLGSIPWERKTVTPASLWHHPGLVLIHAEGVETPQPELTEAV
2301597..2301731                   integrase; MC63_012210                                                               N/A                 ShigellaflexneriVSAPSATSCENCPVWQQSRPSILMDTNDEFPDNKRYSLLPFLFA
2301679..2302353                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: minor tail protein; MC63_012215; phage(gi100055)     3.30e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
2302350..2302697                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail tip protein; MC63_012220; phage(gi100054)     4.80e-52            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLMPAQLSMLLEGSAWQHPKRTERPGIRI
2302717..2304318                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; MC63_012225; phage(gi100053)     0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(2304351..2304527)       hypothetical protein; MC63_012230                                                    N/A                 ShigellaflexneriTTLSRFIKRSSNQRYAIKRLDAGLTEQQKQRIVEQVPSRLRKLYHTGFKYESSRQFCSK
complement(2304544..2305241)       PHAGE_Entero_P1_NC_005856: InsA; MC63_012235; phage(gi46401643)                      1.50e-55            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQPYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRACNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2305296..2305487)       hypothetical protein; MC63_012240                                                    N/A                 ShigellaflexneriVNINYPAEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVPLSTITTL
2305558..2305623                   hypothetical protein; MC63_012245                                                    N/A                 ShigellaflexneriMYIFITHFFTEYVIFKYLLPI
2305762..2306373                   Holliday junction branch migration protein RuvA; MC63_012250                         N/A                 ShigellaflexneriMIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
2306382..2307392                   PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; MC63_012255; phage(gi100221)     4.55e-10            ShigellaflexneriMIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGAQEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEMP
2312627..2312640                   attR                                                                                 N/A                 CGCCGCATCCGGCA

#### region 11 ####
2317634..2317648                   attL                                                                                 N/A                 GTTTGGTCATTTGCC
complement(2324955..2325617)       PHAGE_Yersin_fHe_Yen9_04_NC_042116: L shaped tail fiber protein; MC63_012335; phage(gi100273)     2.90e-18            ShigellaflexneriMLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
complement(2325641..2326297)       carbon-nitrogen hydrolase family protein; MC63_012340                                N/A                 ShigellaflexneriMSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGNYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
complement(2326399..2326629)       PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; MC63_012345; phage(gi422936677)     1.54e-22            ShigellaflexneriMLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQPEHLRSWFRERLIAHRLASVNLSRLPYEPKLK
2326768..2327142                   CopC domain-containing protein YobA; MC63_012350                                     N/A                 ShigellaflexneriMASTARSLRYALTILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFSVK
2327146..2328018                   hypothetical protein; MC63_012355                                                    N/A                 ShigellaflexneriMLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLMIRRLLTKRSLRLQQHAAVWSLISATAMLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGVWLWQIVLALVTLIVALMQPRNMPRLLFMLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWRHQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYGQLLLLKAILVMIMVVIALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLVIISLLATLEPF
2328031..2328372                   PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; MC63_012360; phage(gi971764937)     1.11e-11            ShigellaflexneriMMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC
complement(2328765..2329841)       PHAGE_Entero_HK022_NC_002166: integrase; MC63_012365; phage(gi9634144)               6.75e-84            ShigellaflexneriMQRKKYDPNLPRNLTYRRRDKAYYWRNPLTKEEFTLGKISRRDAVAQAIEANHYIYKNYSPAALIEKLKGVDSFTMADWIERYKTILIRRKASRNTYKTRVNQLVTIKENLGGVLLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAGLRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGILFSENPPTFHEIRSLAGRLYKEICGEEFAQRLLGHTSEKTTKMYLDEREKTYLLL
complement(2329807..2330088)       excisionase; MC63_012370                                                             N/A                 ShigellaflexneriMNLVTLKTWGKLRYPDNPPSISTLRRWARNGNIYPAPELHGRSYRVVPEAFYINPNKVDTDITHHQPNGRQGRDSPLMEKLKHAAEKIRSQFA
complement(2330205..2331354)       PROPHAGE_Xantho_33913: ISxac3 transposase; MC63_012375; phage(gi21231087)            8.13e-05            ShigellaflexneriMGRLRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILRILHRSRKIRVNRTMATTISHSDVSGIWCIQERLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGTSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLDGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQCSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
2331424..2332035                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; MC63_012380; phage(gi157166064)     5.36e-08            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDIRDFSAQYSDRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCSCLWRNARAFYSHIVRNAPWKLKKSLIPVIPKVAQ
2331924..2332547                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; MC63_012385; phage(gi730985066)     5.21e-41            ShigellaflexneriMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWPAEQEAKPFTFEWNGRIWNAGPNSLGRLSPVVMLAKSVAAQTNMTWSDADNQQVQLTTQELEELATAMIQAIVERNDEIYRRQREMKEELSGLDDLASIRAFDVE
2332547..2332726                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; MC63_012390; phage(gi849255281)     4.26e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2332727..2334433)       E3 ubiquitin--protein ligase; MC63_012395                                            N/A                 ShigellaflexneriMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNHLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(2334682..2334762)       SAM-dependent methyltransferase; MC63_012400                                         N/A                 ShigellaflexneriSASRGTFLHTTCYGFLYDLGLRLYLY
complement(2334834..2334926)       transposase; MC63_012405                                                             N/A                 ShigellaflexneriFNQLPFFSSFLEKFSGIFQVNPCRRKQFLY
2335184..2335669                   PHAGE_Shigel_Sf6_NC_005344: gene 58 protein; MC63_012410; phage(gi41057331)          8.08e-47            ShigellaflexneriMKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQSLRCLQLLEQHWVRAVRGNHEQMAMDALAFQQMSLWLMNGGDWFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQVL
complement(2335714..2336870)       PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; MC63_012415; phage(gi41057344)          3.68e-06            ShigellaflexneriMSRKTQRYSKFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRKDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
2342830..2342844                   attR                                                                                 N/A                 GTTTGGTCATTTGCC

#### region 12 ####
complement(2661809..2662099)       PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; MC63_014240; phage(gi327198620)     1.66e-41            ShigellaflexneriMVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL
complement(2662099..2662698)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; MC63_014245; phage(gi169257286)     4.92e-69            ShigellaflexneriMAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSDAAEQYLNTVATCRTRDTALLKSFDAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDETEFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
2662832..2663529                   PHAGE_Entero_P1_NC_005856: InsA; MC63_014250; phage(gi46401643)                      1.02e-56            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2663547..2663798)       PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; MC63_014255; phage(gi423262436)     3.57e-06            ShigellaflexneriMDITVCTYKPGGIVEKIKKLFSSKYAVIRRDDLSVIVEMDYFPETPKSIMYRNGRKAIFLPMRVSDIMGNDKLLDELRVRASC
complement(2664035..2664247)       PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923: hypothetical protein; MC63_014260; phage(gi100072)     3.06e-38            ShigellaflexneriMSHKCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(2664645..2665010)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; MC63_014265; phage(gi116222036)     3.05e-39            ShigellaflexneriMINRTKLEHILEYARQQKCIGQLCKIPPGDMVEIVEMAMRKAGNSPVTLAGWISCSDAVPAEYCDVILLDDLGNVFPGSWDKVFCPTRGGNKMAFVDKDGVEVESSTHWMPLPEPPQEVNQ
complement(2665010..2665675)       PHAGE_Escher_Av_05_NC_025830: hypothetical protein; MC63_014270; phage(gi730985112)     2.25e-43            ShigellaflexneriMATITKERLQWLANISGRDDIDDIDGGEIRELALIALASLEAEPVAECIVEDGGMCIDGFGEYVGHSLPDGMHELYAAPRMRQPDGWKAVAVAWKVTFTQVDQESNTFTAIYFDKAEVERWVRLHKACDFRADITPLYAAPAVPVAVNDDMAYAFHHALSDSSLGSGEIEEIKTGLRAAFANVTIQPEPIVPDEIGPNDSNTFDYVDGWNACRAAMLKGDK
complement(2665675..2666037)       PHAGE_Escher_ArgO145_NC_049918: hypothetical protein; MC63_014275; phage(gi100011)     9.68e-87            ShigellaflexneriMALTKKQRAELRMKFGGRCAYCGCELGEKWHADHVKPVIRFDGNMLHQERDDISNMVPECHPCNLHKHCSSLEDYRRIISDGRREFLASGKGKALVRMGLVEMKSDPVVFWFEKYQEGATA
complement(2666039..2666257)       PHAGE_Stx2_c_Stx2a_F451_NC_049924: hypothetical protein; MC63_014280; phage(gi100012)     2.58e-40            ShigellaflexneriMVTLFRKKYPRKSRTTEFLFLILFIVLMTPISPLIFVWIIGKIIEPVIELYNDVVWASFNTLHNKINPYKES
complement(2666350..2666706)       PHAGE_Escher_ArgO145_NC_049918: hypothetical protein; MC63_014285; phage(gi100017)     1.88e-80            ShigellaflexneriMEIKPEDELSNIVLFPVKEDDPRNQVNFLYEPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(2666764..2667186)       PHAGE_Shigel_Stx_NC_029120: LygF; MC63_014290; phage(gi985761265)                    2.20e-67            ShigellaflexneriMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCMELVASGDVYNSGYGVFPSEQAHKDWQNARKKLSRVKVKKPVVVDPDLIWSLPDGEIRRYDRRLNIICRECRKSEAMQRVLAFYQGKFQEAVL
complement(2667201..2667947)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; MC63_014295; phage(gi169257280)     2.89e-101           ShigellaflexneriMKNIATGGVLERIRRLTPPHVTAPFRTVAEWREWQLAEGQKRCEEINRLNRQLRVEKILNRSGIQPLHRKCSFANYRAQNDGQRHALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLMAKGRSVIIVTVSDVMSVLHESYDNGKSGEKFLQELCGVDLLVLDEIGMQRDTKNEQVVLNQIVDRRTASLRGVGMLTNINHAAMNTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
complement(2667954..2668583)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; MC63_014300; phage(gi169257279)     1.01e-23            ShigellaflexneriMLEGRLSGGTAAEFCNSAVVALQAAGLDVCREYPVPERGDGCGGRIDIVVTDRNGVRCGIELDRNSPRQKSLLKIGAVETGICVLRRSDIARHTEQGILVIGGAVRQKKFDPLSVDLPDWLPDTLWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG
2668741..2670014                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_014305; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2670028..2670438)       PHAGE_Azospi_Cd_NC_010355: hypothetical protein; MC63_014310; phage(gi168495118)     6.52e-11            ShigellaflexneriMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWVDVEPSLREFFCDNGDEWMHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVGVVFEHD
2670542..2671698                   PROPHAGE_Escher_CFT073: transposase insF; MC63_014315; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2671723..2671902)       PHAGE_Escher_ArgO145_NC_049918: tail assembly protein; MC63_014320; phage(gi100053)     9.89e-32            ShigellaflexneriMDQMEKITTGVSYTTSAVGTGYWFLQLLDRFSPSQWAAIGVLGSLLFGLLTYLTEVYWQ
complement(2672052..2672213)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; MC63_014325; phage(gi116221995)     7.94e-20            ShigellaflexneriMILRHRTGPAFQAIKDSLAVGLNALTLTDITKNATYGVEIESLVLEINAPASS
complement(2672210..2672398)       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; MC63_014330; phage(gi209427766)     1.28e-33            ShigellaflexneriMAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAITPYTLMQAIAAEGDVVVSGATEPE
2672658..2672993                   PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; MC63_014335; phage(gi209447168)     3.67e-54            ShigellaflexneriMKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFTLTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQICPYGLKQQSP
complement(2673441..2673767)       hypothetical protein; MC63_014340                                                    N/A                 ShigellaflexneriMVFSALSIYHSYGVGRVNIDEASGCFILRQRIDIVNAARAKAFSRLTVLFCTPDRLSGRDVIILNSDAIQRVCDEFMVANSELFALVQEYNRIARTCGMDELRITHLG
complement(2673905..2673981)       tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAGCGCGCCA
complement(2674083..2674158)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(2674302..2675123)       PHAGE_Entero_HK225_NC_019717: late gene regulator Q; MC63_014355; phage(gi428782441)     2.80e-112           ShigellaflexneriMKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCCYGEKFIESIVFTNKIQYPDGKPPVWAKCTKGVYPSYWEEWKKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGYERLPSTEAFNAICEVTNQITRASWEKTVKKFYDALVTRFDIEEAWAERQLKKVTR
complement(2675138..2675494)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; MC63_014360; phage(gi985761276)     4.09e-46            ShigellaflexneriMLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQRLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQPVSGGRLGVKIYPIMH
complement(2675507..2676556)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; MC63_014365; phage(gi428782365)     5.23e-134           ShigellaflexneriMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRLLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNAQVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPQQEKTVVSIAVDPESPESFMKRPKRRSWVNEKYKRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLIFRFLDHAFATGVLG
complement(2676558..2676836)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; MC63_014370; phage(gi169257287)     6.22e-10            ShigellaflexneriMARNAKYYNHDNSTVLAHTHERYSHAFKSDWYQHPSCTEEQAEWLIQCYRRRGCEVKKALSLDYRHWIISVRLPYSEQPPRPSRTFQQRIWR
complement(2676903..2677153)       hypothetical protein; MC63_014375                                                    N/A                 ShigellaflexneriMMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKMGLRLILWMPERTDLSCATVSLSLHYRHKRPEKLAFLLFQKNAA
complement(2677371..2677526)       PHAGE_Entero_933W_NC_000924: host killer protein; MC63_014380; phage(gi9632541)      1.61e-25            ShigellaflexneriMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(2677598..2677885)       mRNA interferase RelE; MC63_014385                                                   N/A                 ShigellaflexneriMAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
complement(2677885..2678124)       antitoxin RelB; MC63_014390                                                          N/A                 ShigellaflexneriMGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
2678149..2678454                   hypothetical protein; MC63_014395                                                    N/A                 ShigellaflexneriMSLQVSHYNMLRASHEGSQKVVVRTVITVRFVPGAAIAKSILYCAGQLFFKESGHHLTGTDTIYFVTVRLHMHNSTYSSIFCFSMSVRCTGNSGHYHLFFF
complement(2678451..2679607)       PROPHAGE_Escher_CFT073: transposase insF; MC63_014400; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKEQRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMAKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2679671..2679874                   hypothetical protein; MC63_014405                                                    N/A                 ShigellaflexneriKFPTTGSTSPAVPFQITFSECSKGTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGKKYWTEICVR
2679862..2680029                   type 1 fimbrial protein; MC63_014410                                                 N/A                 ShigellaflexneriMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ
2680042..2680407                   fimbrial protein; MC63_014415                                                        N/A                 ShigellaflexneriMKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALKNG
2680432..2680545                   type 1 fimbrial protein; MC63_014420                                                 N/A                 ShigellaflexneriVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ
2680558..2680923                   fimbrial protein; MC63_014425                                                        N/A                 ShigellaflexneriMKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALKNG
complement(2680998..2681207)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; MC63_014430; phage(gi557307573)      4.43e-42            ShigellaflexneriMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(2681272..2682485)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; MC63_014435; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGGGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA

#### region 13 ####
2818211..2819367                   PROPHAGE_Escher_CFT073: transposase insF; MC63_015130; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIRVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2819392..2819598)       PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; MC63_015135; phage(gi399498856)          9.92e-33            ShigellaflexneriMSPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDIMPGEVYWQ
complement(2819598..2819813)       PHAGE_Escher_ArgO145_NC_049918: tail assembly protein; MC63_015140; phage(gi100053)     2.23e-35            ShigellaflexneriMKSMDKISTGIAYGTAAGSAGYWFLQWLDQVSPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
complement(2820546..2821394)       hypothetical protein; MC63_015145                                                    N/A                 ShigellaflexneriSMLNGVLKDAQDNIPFPVEVLPTRNSLPTPIIAHTLADRSVLVPVRGGKRPEVVTAPSGTEITVEPIEQAILVSHQTKLWDQKSTTGFTQGTLQQDALNICDNVIRTINSKMVDVLESSKLLKTVELPALTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESHLKALSRLAAKQGFGGEDAIVDMLGTDVAYYNGEDRGVFMMAKRFTALSFGCFRHDGESITVVLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVKRLSFTKEAN
complement(2821400..2822568)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; MC63_015150; phage(gi526244689)     8.58e-138           ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(2822549..2822773)       hypothetical protein; MC63_015155                                                    N/A                 ShigellaflexneriMLNSRTYLYQRNGVFYIRLRMKTTGRLTASLPSHNRYKLASVSLLKWHTEFGHLNRGDMLTSEQHRCSNEKKKF
complement(2822908..2822978)       tRNA                                                                                 N/A                 GCGGCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCTTCGCCCGCTCCA
complement(2822982..2823057)       tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
complement(2823060..2823136)       tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
complement(2823138..2823214)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
2823235..2823504                   hypothetical protein; MC63_015180                                                    N/A                 ShigellaflexneriMSSHLQTHLTTSAFNALCHFSGTKKTRIKRVLSSVHVCYSPRDTALRSLPELKQFMCKNARTFLKLHQPFHQFISANNKPTIGSRQFQP
complement(2823424..2823984)       PHAGE_Entero_VT2_Sakai_NC_000902: similar to antirepressor of bacteriophage P22; MC63_015185; phage(gi9633431)     4.15e-63            ShigellaflexneriMLKKRTNGSVRYCQYTSQIPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGKHFFKVVGNDLKELRVALNYSQNPVSPKARSLILWTERGAARHAKMLETDQAWDVFEKLEDCYFSQRDPSTPVSCQKSYDTRVLCYQRGGVTVSTIQLRDDDIVISLKSWLELARANGWFVVRRDKLVERLMQL
complement(2823977..2824546)       PROPHAGE_Escher_CFT073: transposase insF; MC63_015190; phage(gi26249410)             3.70e-140           ShigellaflexneriRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMVLRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA

#### region 14 ####
2988972..2989112                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; MC63_016050; phage(gi169257237)     3.76e-10            ShigellaflexneriMKIKSISKAVLLLALLTSTSFAAGKNVNVEFSKGHSDPTHVIWTQA
complement(2989109..2990271)       PROPHAGE_Escher_MG1655: IS3 transposase B; MC63_016055; phage(gi16128284)            0.0                 ShigellaflexneriMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILPKGRDILREAPEMKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWPGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA
2990335..2990634                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; MC63_016060; phage(gi169257237)     1.32e-54            ShigellaflexneriHSSAQYSGEIKGYDYDTYTFYAKKGQKVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYELRVLQTRNDARKNKTKKYNVDIQIK
complement(2990742..2990906)       PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; MC63_016065; phage(gi169257180)     9.47e-18            ShigellaflexneriSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVDGKRSGKINQTTTKMLFMCRE
2990953..2992226                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_016070; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2992240..2992446)       PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; MC63_016075; phage(gi169257180)     3.97e-06            ShigellaflexneriMNMMRIIYIGLSGMGMMFSSMASGHDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLGEKAAENLQS
complement(2992599..2992826)       hypothetical protein; MC63_016080                                                    N/A                 ShigellaflexneriMALIHSLKNTLVNQPIAVVLLILLIYASFFRTLIVTASPDLFKYPVLRQVYFFTTPGFLNFPFFAASLKNRYPLS
2992966..2993661                   septum site-determining protein MinC; MC63_016085                                    N/A                 ShigellaflexneriMSNTPIELKGSSFTLSVVHLHEAEPKVIHQALKDKIAQAPTFLKHAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGKEKAPRPAPAPQAPAQNTMPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAGRLQLVENALTVQPLN
2993685..2994497                   PHAGE_Lactob_Lb_NC_047983: minor tail protein; MC63_016090; phage(gi100055)          7.87e-05            ShigellaflexneriMARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG

#### region 15 ####
3015682..3016353                   PHAGE_Altero_vB_AmeM_PT11_V22_NC_048847: hypothetical protein; MC63_016240; phage(gi100030)     4.29e-07            ShigellaflexneriMRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR
3016353..3017813                   Virulence sensor protein PhoQ; MC63_016245                                           N/A                 ShigellaflexneriMKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFYTLAQWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE
3017894..3017914                   attL                                                                                 N/A                 ACTACACCATTAACTACACCG
complement(3018610..3018891)       hypothetical protein; MC63_016250                                                    N/A                 ShigellaflexneriMTEAEITGLIRRVAGISQQADEQATQPDSVTAENYARVVAEVMRRDGIELNGVDMRNIRTRVLELLAYRRRVEMYREKEKITYHWKKPERLRR
complement(3018994..3019691)       PHAGE_Entero_P1_NC_005856: InsA; MC63_016255; phage(gi46401643)                      8.90e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHAWRESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
complement(3019742..3021343)       PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; MC63_016260; phage(gi100002)     2.15e-100           ShigellaflexneriMTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYMFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHG
complement(3021327..3021683)       PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; MC63_016265; phage(gi593779760)     4.61e-16            ShigellaflexneriMARPPKAPAYLDDIAVKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRLE
complement(3021806..3021979)       hypothetical protein; MC63_016270                                                    N/A                 ShigellaflexneriMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAKRLTDRDREVMECFRNR
complement(3021972..3022412)       PHAGE_Bacill_phi105_NC_004167: hypothetical protein; MC63_016275; phage(gi22855043)     3.54e-25            ShigellaflexneriMPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRARGYSRQWDKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPLCQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE
complement(3022412..3022708)       PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; MC63_016280; phage(gi526244642)     1.30e-09            ShigellaflexneriMTEELITLEEVKLHCRIDGDDEDQLISGYIAASLEACQIHIGRRFDDGLAFTPAIKIGCMMFIAHLYENRQIVADNAKTRVPMTIGALWTAYRDVGGY
complement(3022705..3023043)       PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; MC63_016285; phage(gi9634168)     2.07e-34            ShigellaflexneriMNIGRLRDRITIQTLKQTRDITGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
complement(3023040..3024251)       PHAGE_Psychr_Psymv2_NC_023734: phage portal protein, HK97 family; MC63_016290; phage(gi593779762)     1.99e-49            ShigellaflexneriMWPFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLSAVMNAVTVISEAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRHCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNTRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSGVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
complement(3024253..3024825)       PHAGE_Entero_IME_EF4_NC_023551: prohead protease; MC63_016295; phage(gi589893040)     1.26e-34            ShigellaflexneriMGEKIMKSMEIRSSEITTSGAGTLTGYVVRWDKLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTGRDVIELVKRGDISGMSFSFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPREDNRRWWADLAGV
complement(3024865..3026022)       PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; MC63_016300; phage(gi23505451)     4.42e-56            ShigellaflexneriMQRIIELRQQKTAIKNQMRDMLENAEKENRSLNDAEGAKFDELRAKAESLDKDISRLEAIADEERSKPGKSSQTTDPAELRNYILTGETRALSTGVPADGGYTVIPELNTEIMRMLADESTMRRICTVKKISSNEFKQLVSAGGATVNHGEEGKAREQTSTPQINEVSIKLYPVYAYPRTTQEIVDFSDVDILSWLTGEIGNTFTETEESDLVVGDGDKKAKGFLSVPRAEKNDKERDFGTLQVIKPSESLAWTSADPLIDLKFALRKKYRKNAVWVVNSTTAAKLQKVKNANGDYIWRDRLQAGDPDTLLGLPVEYLEFMPDNVIALGDFKRGYYIVDHETGVRTRPDNLTEPGFIKIFTQKYLGGGVVDSNAIKILELPEDDD
complement(3026325..3026486)       PerC family transcriptional regulator; MC63_016305                                   N/A                 ShigellaflexneriMTAQIAAYGRLVGDPLVKQSSKGTPEPPTENYADLRNAVNRTYADMGLSKLAE
complement(3026496..3026801)       hypothetical protein; MC63_016310                                                    N/A                 ShigellaflexneriMSEPKFGEKFYKHNGRITILQISAATPGWWVETDEGSSPVASWALCVLSYPDRDVYQDILPVISTDKGMKPVDIKNMGFQCVMLTEKMMEEMKKNNAGSLH
complement(3026798..3027076)       hypothetical protein; MC63_016315                                                    N/A                 ShigellaflexneriMHTSGKFNKSLKKRRDRTEPKYRALDMTEHALKVAIRTIDRHAGEGYAKAHPELISAFMTTTAANFATLTEREIAEAEQVTTINVKTGEVES
complement(3027356..3029104)       PHAGE_Entero_P4_NC_001609: DNA primase; MC63_016320; phage(gi9627512)                9.66e-103           ShigellaflexneriMKLAPNVKKQPRGIKHKDTEVIIFAGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKRVINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGRPQVVGSRLIVLADQPKYTGEGTGIKKITGGDPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKGVTQTNAITTDECDAFL
complement(3029101..3029400)       hypothetical protein; MC63_016325                                                    N/A                 ShigellaflexneriMKLKYSGLTASGNTHPKFTRGDIYRDQYGGMVTIKGVAERRITYRREGYEYDCVMPVYQFRRDFTLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK
complement(3029406..3029639)       hypothetical protein; MC63_016330                                                    N/A                 ShigellaflexneriMRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSRIATALITLLEPVIMELQEIDLLHDRYKEQHTGE
complement(3029641..3029861)       hypothetical protein; MC63_016335                                                    N/A                 ShigellaflexneriMRDDRFNSLKQEFSGVPDDAADALSSMPELIRAAFFLLSTREYKSTGLMYISPPIMLISQRLFEKRRTGIAA
complement(3029854..3030075)       hypothetical protein; MC63_016340                                                    N/A                 ShigellaflexneriMHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFALECIRYIATRSLNDAKNILVADCENGGGYA
complement(3030065..3030265)       host cell division inhibitor Icd-like protein; MC63_016345                           N/A                 ShigellaflexneriMVAVNHIPHLVHTQTAFVWRFLALSTGESQIIHVTAWTEREARSRCPSGCVAVFAARIRQGETYAQ
complement(3030274..3031020)       hypothetical protein; MC63_016350                                                    N/A                 ShigellaflexneriMKIEYTPERGRGFVRPGETGKPQNWGFSGIKKAAPKWSRLSEQITRCAVCVCDPKHKHGDDSRYQAGGQCNQSGSVRCHNCEVLSFDEYSLRYFSRAKEHGANRSDSCSFFLRRLFRAGDVFSVDSSLVIVCACKAMRRSTSHHGADSFYPLGSMPRCCNSLRIIRFIQAARESSPSCCCAFSIFSRKSGSKRNWNGGLPRLSFLCVDTLITPHVMYLCVMTHYTQSTQKAKPRTVGAVTGLLTNNVN
complement(3031078..3031266)       PHAGE_Entero_P4_NC_001609: transcriptional regulator; MC63_016355; phage(gi9627517)     1.89e-10            ShigellaflexneriMLSTDRFIREKECEKLTGLSRSCRYRLEKAGQFPSRRKLGGRSVGWSLSEVLAWKDSCKAVH
complement(3031641..3032870)       PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; MC63_016360; phage(gi399528791)      1.25e-68            ShigellaflexneriMSRALNKLSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLTWYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQEALKPVTVGDALTYWLESYAKENRVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQVAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGELLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWTERLGILAGTHENVTTLPVARRK
3032897..3032917                   attR                                                                                 N/A                 ACTACACCATTAACTACACCG

#### region 16 ####
3145736..3146116                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; MC63_017055; phage(gi209447151)     1.16e-86            ShigellaflexneriMQKNVTPGRRKGCPNYPPEFKQLLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAAAEQPESLAEDPETLSISCEVTFRHGTLRFNGNVSEKLLTLLIQELKR
3146113..3146460                   PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_017060; phage(gi209447152)            1.63e-77            ShigellaflexneriMIPLPSGTKIWLVAGITDMRNSFNGLAAKVQTALKDDPMSGHIFIFRGRSGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTQAQLAMLLEGIDWRQPKRLLTSLTML
3146510..3147895                   PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_017065; phage(gi209447153)            0.0                 ShigellaflexneriMNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE
complement(3148134..3149507)       esterase-like activity of phytase; MC63_017070                                       N/A                 ShigellaflexneriMDANNMKRKIIPVLIGCTLSFSALAAQPTAERYVVSFPEGTHVNYAGAFASAFPNGLPVGIGSGLLFTGKQGDALTFATITDRGPNADSPKEGKNETKIFVTPDFAPLLMTIRVQNGKAEAIDPRPLHDDKGAINGLPLASDVIGSTNEVAFSDTLHRLKGDNRGLDTEGITPDGKGGYWLCDEYGPFLINIDSKGKILAIHGPQAAEGEKAIAGGLPNILKWRQANRGFEGLTRMPDGRIIVAVQSTLDIDAKSKKKALFTRLVSFDPASGKTAMYGYPIDSAAYSKNSDAKIGDIVALDNQHILLIEQGRDKNNRMRNLIYEVDLNKASDLSGFDKPGEYPEFDDEKTLSQRGITLAQKTQVVDLRSLGWQQEKAEGLALIDSKTLAVANDNDFGVKVAMQHPVEGKTFKDYRVNAEGKLTLDDKQVETTLRVKPLEKPESDSELWIVTLPEALK
3149774..3149905                   PROPHAGE_Escher_CFT073: partial transposase; MC63_017075; phage(gi26250974)          1.09e-22            ShigellaflexneriELTTLTWVDWYNNRRLLERQGHIPPAEAEKAYYASIGNDDLAA
3149871..3150062                   PHAGE_Entero_HK022_NC_002166: IS903 transposase; MC63_017080; phage(gi9634149)       4.87e-05            ShigellaflexneriMLPSETMIWQPEFTDKTLSRKPGAVQLLDKIITIHRVKQVVTASLKLRDYDGQVAEAMPMIQK
complement(3150225..3150482)       biofilm development YmgB/AriR family protein; MC63_017085                            N/A                 ShigellaflexneriMHSDYYNMVFGEKLANILYEANSQFFYERNVIEEAVNALFCEREIINNKNIIKKLMFFLSDVNHTKKDVVQSALNIIIDITSGDI
complement(3150822..3150926)       PROPHAGE_Escher_MG1655: IS3 transposase B; MC63_017090; phage(gi16128284)            1.12e-13            ShigellaflexneriANLLNYIECDYNRWRWYSWCGGLSPEQFENHNLT

#### region 17 ####
3213322..3213944                   PHAGE_Entero_P1_NC_005856: InsA; MC63_017465; phage(gi46401643)                      2.14e-40            ShigellaflexneriGHQRYLCSHCRKTWQLQFTYTSSQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
3213959..3214351                   polysaccharide export protein Wza; MC63_017470                                       N/A                 ShigellaflexneriPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN
3214339..3214785                   protein-tyrosine-phosphatase; MC63_017475                                            N/A                 ShigellaflexneriMAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVRGKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR
3214805..3216790                   protein-tyrosine kinase; MC63_017480                                                 N/A                 ShigellaflexneriMTTKNMNTPLGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMLPNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVSAVLARAMLRRGVEAPEQLEEHGISVYSTIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLGKRPEKYVA
complement(3216794..3217513)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_017485; phage(gi209447153)            1.68e-101           ShigellaflexneriDRNAGSSLPAAVWFAYSADRKGEHPQLHQAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(3217557..3218713)       PROPHAGE_Escher_CFT073: transposase insF; MC63_017490; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKGNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIRVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(3218778..3219662)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_017495; phage(gi209447153)            7.54e-85            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDD
complement(3219682..3220029)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_017500; phage(gi209447152)            6.23e-53            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGSAWQHPKRTERPGIRI
complement(3220026..3220700)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; MC63_017505; phage(gi209447151)     3.65e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALHLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
3221063..3221254                   PHAGE_Shigel_Stx_NC_029120: NinH; MC63_017510; phage(gi985761277)                    3.40e-27            ShigellaflexneriMSVKIQTIPELLIQTRGNMTEVSRMLNCNRATVRKYAEDKEGKGHAIVDGVLIVHRGWDRGKE
3221403..3222329                   PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_017515; phage(gi209447153)            7.49e-134           ShigellaflexneriYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHQAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDRGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
3222455..3222531                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
3222533..3222609                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
3222612..3222687                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
3222691..3222765                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
3222943..3223239                   hypothetical protein; MC63_017540                                                    N/A                 ShigellaflexneriMMHHSGVVNISSDNLQNILSKPREHTLNCLGWRFFVQRSVCVSWKSDFAWTGIMLLFRGEELAFSSAFSPVTIRKIMKCPPPGRRTVEKRTRQQKHWG
3223449..3223664                   PHAGE_Entero_SfI_NC_027339: putative lysozyme; MC63_017545; phage(gi849250281)       9.28e-41            ShigellaflexneriMYQMEKISTGIAYGTSGGSAGYWFLQWLDQVSPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
3223664..3224161                   PHAGE_Stx2_c_1717_NC_011357: phage-related lysozyme; MC63_017550; phage(gi209447172)     1.51e-116           ShigellaflexneriMSPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDIMPGKTYTEAECKALLNKDLVTVTRQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ
3224158..3224388                   PHAGE_Salmon_HK620_NC_002730: endopeptidase; MC63_017555; phage(gi13559860)          3.80e-44            ShigellaflexneriMSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNARELKLANATITDMQQRQRAADALDAKYTTELANAK
complement(3224394..3225562)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; MC63_017560; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKVSPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(3225657..3227258)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_017565; phage(gi209447153)            0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETDRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(3227278..3227625)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_017570; phage(gi209447152)            6.23e-53            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGSAWQHPKRTERPGIRI
complement(3227622..3228296)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; MC63_017575; phage(gi209447151)     3.62e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR

#### region 18 ####
3320359..3322641                   PHAGE_Morgan_vB_MmoM_MP1_NC_031020: hypothetical protein; MC63_018015; phage(gi100099)     1.28e-29            ShigellaflexneriMSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKALEKVVGLQTEAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKYAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDLLSYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM
3322833..3323573                   PHAGE_Clostr_phiCD211_NC_029048: Anaerobic ribonucleoside-triphosphate reductase-activating protein; MC63_018020; phage(gi981220959)     1.19e-09            ShigellaflexneriMSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMF
complement(3323655..3323783)       transposase; MC63_018025                                                             N/A                 ShigellaflexneriYLGIEDADVTFLCNTVVFDGEELHASYYQSLLSQVRDMVDAL
3323841..3324310                   PHAGE_Entero_P1_NC_005856: InsA; MC63_018030; phage(gi46401643)                      6.64e-58            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNVDWPPESPDNQYHLTT
3324314..3325587                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_018035; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRGARAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
3325599..3325874                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; MC63_018040; phage(gi557307573)      1.47e-56            ShigellaflexneriERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
3326020..3326664                   PHAGE_Klebsi_ST437_OXA245phi4.1_NC_049448: tail assembly protein; MC63_018045; phage(gi100053)     4.42e-21            ShigellaflexneriMTPTGTLKINAARVAARIFLMPLLVGFTREYPDIKVELTTDDSLIDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLEDWITERPGFQVYYPNRQYMSCGLRAFLDYVKTGQICQSQRHRPQ
complement(3326665..3327060)       amino acid permease; MC63_018050                                                     N/A                 ShigellaflexneriYLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTACACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK
3327118..3328274                   PROPHAGE_Escher_CFT073: transposase insF; MC63_018055; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIRVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNENLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(3328271..3329311)       amino acid permease; MC63_018060                                                     N/A                 ShigellaflexneriMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFIPHIDFSYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLRCTGNSGHYHLFFF
complement(3329382..3330983)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_018065; phage(gi209447153)            0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHQAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(3331003..3331350)       PHAGE_Stx2_c_1717_NC_011357: transposase; MC63_018070; phage(gi209447152)            6.23e-53            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGSAWQHPKRTERPGIRI

#### region 19 ####
3440908..3441312                   PHAGE_Erwini_Derbicus_NC_048173: tail fibers protein; MC63_018610; phage(gi100168)     8.85e-09            ShigellaflexneriMHVIDLYYFVKIYRSKNKHISVNFLRHLHRAGDLHLSGTTRCIYEDVIMKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK
3441577..3441906                   TonB-dependent receptor; MC63_018615                                                 N/A                 ShigellaflexneriMENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQANADDTLVVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGNASQLSN
complement(3441895..3443223)       PROPHAGE_Escher_MG1655: IS4 transposase; MC63_018620; phage(gi16132099)              0.0                 ShigellaflexneriMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATLHSHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIGQTGDNTLTLMDKGYYSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSNRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA
3443288..3445297                   PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; MC63_018625; phage(gi100064)      8.65e-11            ShigellaflexneriSLTDRHYPGVGAFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGAAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTSRTANIKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSRIHPGGLTRNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATTCGGSGRGAITCPAGVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGARYIGSIHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNVYNLFDTDYVASINKSGYRYHPGEPRTFLLTANMHF
3445339..3446016                   PHAGE_Synech_S_PM2_NC_006820: PiuC; MC63_018630; phage(gi58533039)                   8.20e-24            ShigellaflexneriMMYHIPGVLSPQDVAHFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENEEILSLLNLYHNLLREWSEI
3446090..3446329                   PHAGE_Cronob_vB_CsaP_GAP52_NC_019402: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; MC63_018635; phage(gi414087569)     5.35e-17            ShigellaflexneriMASAWANDDAVNEQINSTIEDAIARARGEIPRGESLYECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNR
3446621..3446881                   PHAGE_Erwini_Wellington_NC_048016: hypothetical protein; MC63_018640; phage(gi100190)     1.83e-07            ShigellaflexneriMKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSGTAVIYK
complement(3447110..3448195)       malate/lactate/ureidoglycolate dehydrogenase; MC63_018645                            N/A                 ShigellaflexneriMESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLAS
complement(3448336..3449298)       DNA-binding protein YbiB; MC63_018650                                                N/A                 ShigellaflexneriMDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALCLSSVSHPEYIGRVAKFFSDIGGWALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDPAGSELLPQAKDPETTAQWTERCLAGSEAIPESLKIQMACCLVATGEVATISDGLARVNQAF
complement(3449326..3451476)       PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; MC63_018655; phage(gi100158)     4.67e-26            ShigellaflexneriMALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVTRREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDELLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEVQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFEPSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR

#### region 20 ####
3475601..3476890                   PHAGE_Mycoba_Alice_NC_028986: gp185; MC63_018790; phage(gi971763384)                 6.67e-06            ShigellaflexneriMTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
3476868..3477338                   kinase inhibitor; MC63_018795                                                        N/A                 ShigellaflexneriMKHFFANNGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDVERIDVDEGGSGAMVGFNVHFHSLASASITAMFS
3477253..3477432                   hypothetical protein; MC63_018800                                                    N/A                 ShigellaflexneriMKEAAARWSGLTFISTLWQAHRLPRCLVNHSARWRNAIWYHLKVLKTTFCLFTFPFRSS
3477653..3477736                   PHAGE_Entero_IME10_NC_019501: integrase; MC63_018805; phage(gi422934296)             2.44e-11            ShigellaflexneriIYNHAKYLDKRREMMQWWADWLDEKVR
3477892..3478893                   PHAGE_Shigel_Sf6_NC_005344: gene 15 protein; MC63_018810; phage(gi41057293)          0.0                 ShigellaflexneriMHKSNCFDTARLVAAMMVLVSHHYALSGQPEPYLFGFESAGGIAVIIFFSISGYLISKSAIRSDSFIDFMAKRARRIFPALVPCSILTYFLFGWILNDFSAEYFSHDIVRKTISSIFMSQAPDADITSHLIHAGINGSLWTLPLEFLCYIITGVAVALLKNGKAFIVILLVFVSLSLIGSVSENRDVMFSIPLWLYPLRGLAFFFGATMAMYEKSWNVSNVKITVVSLLAMYAYASYGKGIDYTMTCYILVSFSTIAICTSVGDPLVKGRFDYSYGVYIYAFPVQQVVINTLHMGFYPSMLLSAVTVLFLSHLSWNLVEKRFLTRSSPKLSLD
complement(3478927..3480516)       PHAGE_Shigel_Buco_NC_048174: tail fiber protein; MC63_018815; phage(gi100052)        2.29e-82            ShigellaflexneriMPGAVQFYFPNLLKYDPDQFGPDLIEQLAQSGKYSQDNTKGDAMIGVKQPLPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQKYAWSSEAVRSEAIILDSETMCIGFKNAVYVHDCLDLHMEQPDLDYCGSTGVVIENVNGGFSFSNSWIAADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAANNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECVSFDKCIFNKPLCYLRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGVPSVNGIINVPVAVGATSGSAAIPNPGNLTYRVRSLFGDPASSGDKVSVSVVTINVTRPSPVGVALPSMVEYLAI
3480554..3481767                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; MC63_018820; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(3481770..3482111)       PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; MC63_018825; phage(gi849122277)     4.76e-62            ShigellaflexneriMTDITANVIVSMSSQLFTMARSFKAVANGKIYIGKIDTDPVNPENQIQVYVENEDGSHVPVSQPIVINAAGYPVYNGQIAKFVTEQGHSMAVYDAYGSQQFEPPRVSWRVFYL
complement(3482243..3484084)       PHAGE_Salmon_118970_sal4_NC_030919: tail length tape-measure protein; MC63_018830; phage(gi100057)     0.0                 ShigellaflexneriMKVTANGKTFTFPDGTSTEDIGTAIDEYFAGQAVQQQTVNQANNAPTREEPSLMQQAGDWLTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPYAQAGETIGGYLVPGVGTAGSMAIGSLAEAANQKGDFAQNAAKNAGVNLAAQGVLSAAAKGIGRGITAIKGDIAPEVAKKIATSESMGVTPMTSDVIPPKNAFTRGLTQDAEGALLGTGSKRAEQYATRSKLVSNYFDRFGEYNPDDVVKSLTTTLRGRKDAAGAVINDVTNKMGNAAVDTTNTMNALNTAIARQERLGTSANQSLLTSLRNLREELANPATDLDVTFDLLRQHRTAFRSNVQGDAMVFPNQAKAATNMVENAMSKDLRNAVAKNLGASDAAKYLKANSDYANVYNKVLNKNIANKLNKASSEASPELINTVVLSRKPSDVKRIWSALDDKGKDAMRAAYVSKIAEKAGDSPAKFITEVNKLKSQSGGEIYNTIFSGKHMKELDALHEVLQQTARSDTANVVTQTGQSQANRIRTIGATATLGVSMGLEAGFGAMMRLYESKAARNMLLRLANTKAGTAAYERALNNAANAIRPILSSQITAEQ
complement(3484084..3485490)       PHAGE_Salmon_vB_SemP_Emek_NC_018275: injection protein; MC63_018835; phage(gi399498803)     2.34e-169           ShigellaflexneriMATWQGSNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQENQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEDQRNSIGTLAAGARLAASSPEAMQSWLQNNANELARVGVGPNSVAQMYQQNPSGFGEFVDHLGMAALGPIDYFNVQDKMAGREIDRGRLAETIRSNQAGEALQARGQNLSYQSAMTGHNIAAQRLALDQQEFGFKMQQAQEKAQQLISEAPKLSVNMEKGIETAVNNATASSNSANSMSALAQQFRAEKPTTGLFGNAQNMFAKLTGSDTTLRDLRIRQNALVNSQVLKFLPPGPATDKDVEIVRQGAPTDMDNPETVARWLDAMANLERRNAQFNEFKAEWMSANGNPGQSRNGGQILGLDVKKGESLGSAVKRYMSMNTDAAPAQDSTPSGEPRNQVGSYTSKSGIQFTVE
complement(3485500..3486081)       PHAGE_Salmon_vB_SemP_Emek_NC_018275: injection protein; MC63_018840; phage(gi399498802)     6.03e-85            ShigellaflexneriSQKYAADLQNQQWQTIMKNLTPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSQQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANARQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
3486101..3486112                   attL                                                                                 N/A                 AGAGTGTTTTAT
complement(3486121..3487053)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; MC63_018845; phage(gi157166067)     0.0                 ShigellaflexneriSFFCEGGVRPPLEKMMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
3487262..3487342                   PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; MC63_018850; phage(gi16130281)     2.83e-09            ShigellaflexneriIYNHAQYLDKRREMMLWWADYWLDEKV
3487530..3489293                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; MC63_018855; phage(gi169257209)     4.01e-09            ShigellaflexneriMKPVHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGAATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPPSLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPDLPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRLPELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSDDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(3489294..3489473)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; MC63_018860; phage(gi849255281)     1.49e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(3489473..3490096)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; MC63_018865; phage(gi730985066)     2.15e-41            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVK
complement(3490047..3491461)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; MC63_018870; phage(gi18249920)     4.27e-68            ShigellaflexneriMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGSHTEAHDWDRWGFQCPVLPPERIHPHNFSLRDVQSIHYRGHIAPCPGCRMHMSLAQCPGFLFAHRGA
complement(3491525..3492124)       PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; MC63_018875; phage(gi148609401)     1.30e-132           ShigellaflexneriMRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
complement(3492192..3495671)       PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; MC63_018880; phage(gi148609400)     0.0                 ShigellaflexneriMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRGMGKRRGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLERWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDYAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKTLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQSDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKATAGITIS
complement(3495732..3496372)       PHAGE_Entero_cdtI_NC_009514: putative tail component; MC63_018885; phage(gi148609399)     2.57e-72            ShigellaflexneriMAATHTLPLASPGMARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGELWRVICCFLSVPVRLAVLHRCWHRKPELPVHRQRITANRTPVSPHWITWLPRAMFCLFCTVKCAWGRGWYLRRSARQTKGMVVRLWLVAGA
complement(3496270..3497013)       PHAGE_Entero_cdtI_NC_009514: putative tail protein; MC63_018890; phage(gi148609398)     8.52e-167           ShigellaflexneriMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
complement(3497018..3497716)       PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; MC63_018895; phage(gi148609397)     4.45e-155           ShigellaflexneriMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGAGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
complement(3497716..3498045)       PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; MC63_018900; phage(gi148609396)     1.45e-72            ShigellaflexneriMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIREVCRKWSASVGALWVTVTADFEQVVN
complement(3498045..3498783)       PHAGE_Entero_cdtI_NC_009514: putative tail protein; MC63_018905; phage(gi148609395)     4.50e-86            ShigellaflexneriMVVSAIASTPQRAEEVLKGSLKRQLNENKRYWQELEVAQGDWKNGAMRAFQNFTADADNAAGTAEQMFTVAFSSAGNALATFCTTGKLNFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGGCGGYWWFRHGDVCPAVQHDQRRHERADRSGCPEGGLPREKSGRGLYATAGPWWPVKWSIPVA
complement(3498795..3499951)       PROPHAGE_Escher_CFT073: transposase insF; MC63_018910; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIRVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
3500012..3500301                   PROPHAGE_Escher_MG1655: IS150 transposase A; MC63_018915; phage(gi16131428)          5.42e-12            ShigellaflexneriLKDLERQVRFLETRLMYLKKLKALAHPTKKKYSTSGSFILLMSFSGLRRYRAVRFITIRLSASLTSMRTLKSVLVRFITRIEADTDTVGRCLTT
complement(3500310..3501478)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; MC63_018920; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKVSPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRPMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNKWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(3501459..3501557)       host-nuclease inhibitor protein Gam; MC63_018925                                     N/A                 ShigellaflexneriLALKWHTEFGHLNRGDMLTSEQHRCSNEKKKF
complement(3501535..3501672)       chromosome partitioning protein ParB; MC63_018930                                    N/A                 ShigellaflexneriMGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPEVAH
complement(3501645..3502649)       PHAGE_Mycoba_Gaia_NC_026590: PAPS reductase; MC63_018935; phage(gi764160184)         1.96e-44            ShigellaflexneriINYVQSLRELYTDVIEEFYWVALPLTTQNSLSQYQPEWQCEPDVEWVRQPPQDAITAPDFFCFYQPGMTFEQFVREFAEWFSQKRPAAMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTYANHQNLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVSGVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHWYQKKGIEVPQTQQGDIGAKDIPSWRRICKVLLNNDYWCRALSFSPTKAKNYQHYNERIKGKRQEWGILCNND
3502728..3503875                   PROPHAGE_Escher_CFT073: transposase insF; MC63_018940; phage(gi26250329)             0.0                 ShigellaflexneriMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYARIKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDIFKKSRGVLRKAVRLRYAFIRDNSCCWPVRLLCRVLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV
complement(3503894..3504097)       PHAGE_Microb_Hendrix_NC_047977: hypothetical protein; MC63_018945; phage(gi100160)     3.48e-07            ShigellaflexneriMSIYKIPLPLNILEAARERITTLNTLPRVCVSFSGGKDSGLMLHLTAELARQMGKKICVLFIDWEAQ
3504173..3504184                   attR                                                                                 N/A                 AGAGTGTTTTAT

#### region 21 ####
complement(3521849..3522544)       PHAGE_Entero_SfMu_NC_027382: Mom protein; MC63_019045; phage(gi849255285)            1.46e-169           ShigellaflexneriMGKEKKSRILTKPCVIEYEGQIVGYGSKELRVETISCWLARTIIQTKHYSRRFVNNSYLHLGVFSGRDLVGVLQWGYALNPNSGRRVVLETDNRGYMELNRMWLHDDMPRNSESRAISYALKVIRLLYPSVEWVQSFADERCGLAGVVYQASNFDFIGSHESTFYELDGEWYHEITMNAIKRGGQRGEYLRANKERAVVHKFNQYRYIRFLNKRARKRLNTKLFKVQPYPK
complement(3522495..3522683)       PHAGE_Entero_SfMu_NC_027382: Com protein; MC63_019050; phage(gi849255284)            1.24e-38            ShigellaflexneriMKSIRCKNCNKLLFKADSFDHIEIRCPRCKRHIIMLNACEHPTEKHCGKREEITHSDETVRY
complement(3522777..3522974)       PHAGE_Entero_SfMu_NC_027382: DNA invertase; MC63_019055; phage(gi849255283)          6.94e-33            ShigellaflexneriMLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTRTDRPGLKRALKRLQKGTHIENDDRIN
3523090..3523824                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; MC63_019060; phage(gi849255282)     1.61e-164           ShigellaflexneriMSGGLTFENDSILAWIRNTDWAKIGFKNDADSDTDSYMWFETGDNGNEYFKWRHHLTGGRVKDLMNLKWDALYVLVKALFSSEVKISTVNALRIFNSSFGAIFRRSEECLHIIPTRENEGENGNIGPLRPFTLNLRTGRISMGHGLVVTGDIFTNRFLINSSTGMWIHMRDQNVIMGRNAVSNDGAQALLRQDHTDRKFVIGGLGNRQFGIYMINNSRTANGTDGQAYMDNNGNWLCGSQVIPG
3523875..3524572                   PHAGE_Entero_P1_NC_005856: InsA; MC63_019065; phage(gi46401643)                      1.13e-56            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNSRWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
3524589..3524830                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; MC63_019070; phage(gi849255282)     1.29e-30            ShigellaflexneriIPGNYGNFDSRYVKDVRLGSQQYYGVNNWQTWNFQCPSGHVLSGINVQDTGSTLPIILRVFITDRFKSIMALGIMRAFAA
3524832..3525359                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; MC63_019075; phage(gi849255281)     3.39e-117           ShigellaflexneriMMHLKNIKAGNAKTLEQYELTKNFDVIWLWTEDGKNWYGEVKNFQPDTIKIVYDENNIIVAITKDASTLNPEGFSVVEVPDITANRRADDSGKWMFKDGAVVKRIYTADEQQQQAESQKAALLSEAESVIQPLERSVRLNMATDEECARLESWERYSVLVSRVDTAKPEWPQKPE
complement(3525388..3525921)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; MC63_019080; phage(gi849255280)     7.16e-127           ShigellaflexneriMMHLKNISAGNPETKEQYQLTKQFNIKWLYTEDGKNWYEEQKNFQPDTLKMVYDHNGVIICIEKDVSAINPEGASVVEVPDITANRRADISGKWMFKDGIVIKRTYTGEEQRQQVENEKQSLLQLVRDKTQLWDSQLRLGIISAGNKQKLTEWMLYAQKVESTDTSSLPVTFPEQPE
complement(3525924..3526379)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; MC63_019085; phage(gi849255279)     8.48e-103           ShigellaflexneriQAVGWNWNSGVYDANISGASTLILHFNKNTGSCPAVQFRVNYKNGGIFYRSARDGYGFEAGWSEFYTTTRKPSARDVGAYTQAECNSRFITGIRLGGLSSVRTWNGPGWSDRSGYVVTGSVNSNRDELIDTTQARPIQYCINGRWYNAGSI
complement(3526421..3527577)       PROPHAGE_Escher_CFT073: transposase insF; MC63_019090; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA

#### region 22 ####
3659755..3659766                   attL                                                                                 N/A                 GTTACATTAAGG
3661240..3662298                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; MC63_019845; phage(gi371496158)      1.57e-24            ShigellaflexneriMLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLGEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
complement(3662299..3663118)       pyridoxal phosphatase; MC63_019850                                                   N/A                 ShigellaflexneriMTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFLSGAGAGYTCYLLWHLFVLSCKNRAGSGPNARSPATHDAETPHSRSDVCRCNGLAPDRACHSHVLGANPAAGTASDFHTSRFSGNDATSRRMEVHPDARPAAIAAFWACRTTGTGVMVLARSGYCTRRQQQRTFDEMGGARLVDGKRRGIRRLYQYAGSRWYRRGDGQRRRGKSARQHCDWHHRQHCPVHLPPDLA
complement(3663354..3664067)       PHAGE_Entero_HK022_NC_002166: integrase; MC63_019855; phage(gi9634144)               5.12e-52            ShigellaflexneriMSGSAFAVTHYAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYRLAEEDPASATRPFRTEVKRSRLLIDEYLLIRKIADVQNEWFGLCMDLALVTGQREGDLAAMRWEDIRDSRLYVEQQKTGAKIRISLPTTISRLNLTLADVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFHEIRSLSGRLHSAEKGSDFTQAHLGHRSSSMTDKYRDGRGREWKDI
3663987..3664684                   PHAGE_Entero_P1_NC_005856: InsA; MC63_019860; phage(gi46401643)                      9.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(3664700..3665527)       PHAGE_Gordon_BritBrat_NC_030942: hypothetical protein; MC63_019865; phage(gi100061)     3.04e-16            ShigellaflexneriMALFQRAINTQAYLKAGIMGFAGDGKTYTASELAIGLVMLMRQRGIEAGNRPVMFLDTETGSDWVKPRFDAENIELFTAKTRSFVDLLEAINEAESSGSVMIIDSISHFWTGLCDEYARRRNRKRGLEFSDWAWLKQEWRRFTDRFVNSQAHIIMCGRAGYEYDFFEGDDGKRQLAKTGIKMKAETETGYEPSILIQMEKQMNIETGQVWRTARILKDRSTRIDGQVFSNPTFKNFLPHIEFLNLGGEHLGIDTSRDNSELFANDGTPTWLKEKRA
complement(3665533..3665829)       PHAGE_Escher_PA28_NC_041935: hypothetical protein; MC63_019870; phage(gi100021)      5.07e-54            ShigellaflexneriMSAYPIFDRIEEMAWARHYQQIVREEKETELADDLEKGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMAETIAHHQVDIDLED
complement(3665807..3667168)       PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; MC63_019875; phage(gi985761253)     0.0                 ShigellaflexneriMSVKLRLPQAVFSITKKHQPYEFKNFISAWLDTEHIDRGLLTKEWRKGNRVSRITRTTSGANAGGGNLTDRGEGFVHDLTSLTRDVATGVLARSMDVDIYNRHPAHAKRIEEIIAENKPPFSVFRDKFITMPGGLDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKPQPSGAMTDEQATAETVEPNATEHHQNTQPLDAQSQVNSVDEKYQELRAELHEARKNIPPKNPVDADKLLAASRGEFVEGISDPNDSKWIPGHHISSNEVKKTENEVRQTEDKQHQNSEPEEGTPCNQTGEDNCPDCGAVMGDATYQETFDEKKPDEAQEEEPKKTEKADDLLPENAGSDQHNDSNNETGEDELNWKKQVLIAAVYGLCANPACIAYAPAIPDIAMMIANKLENFGVTSDERLPDF
3667207..3667625                   PROPHAGE_Xantho_33913: ISxac3 transposase; MC63_019880; phage(gi21231087)            5.60e-12            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVAA
3667676..3668889                   PHAGE_Escher_PA28_NC_041935: tail assembly protein; MC63_019885; phage(gi100053)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDHLWKKLMPLLDKLREQYGGGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(3668930..3670318)       PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; MC63_019890; phage(gi100053)     4.38e-165           ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHQAKYQGVLQADAYAGYNVLYETDRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENAL
complement(3670338..3670630)       IS66 family insertion sequence hypothetical protein; MC63_019895                     N/A                 ShigellaflexneriMRCGFNGLASKVQNTLKDDRSPGISSSSGAAVAKWKYCGPIVTGYACSPNAWNGAASSGRPGKGKCTRQLSYPCYWRGSRGNIPNGQNGLASGYAA
complement(3670681..3671355)       PHAGE_Stx2_c_Stx2a_F451_NC_049924: minor tail protein; MC63_019900; phage(gi100055)     3.08e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALHLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
3671438..3671605                   PHAGE_Salmon_UPF_BP1_NC_047875: hypothetical protein; MC63_019905; phage(gi100029)     2.64e-27            ShigellaflexneriSSAETSSASGMGNDATVELSPVAGRNVLGIRDGIISDQTALRMLQEYIRIQCLGG
complement(3671694..3672203)       DedA family protein; MC63_019910                                                     N/A                 ShigellaflexneriMEWINALMNYFVLHPYRLWGLLFIIAFTKSTLLISAILPPASIMMATVITVSKTTLSPWEAGITVMSGAWCGTIVNYHLGIIIGHIPQLACIISSRSNTIERVRLQLQNNSVSILFTSRFIAVLRYIAPLVAGMLQLHPVKVYTVSLISAASWSALYVGSFSFVLPFFS
complement(3672315..3673483)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; MC63_019915; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3673555..3673695                   PHAGE_Entero_DE3_NC_042057: hypothetical protein; MC63_019920; phage(gi100005)       8.12e-26            ShigellaflexneriKCRIFPPPVKDGREYLFHESAVKVDLNRPVTGSLLKRIRNGKKAKS
3673673..3674743                   PHAGE_Entero_HK106_NC_019768: integrase; MC63_019925; phage(gi428783305)             0.0                 ShigellaflexneriMGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKIFASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
3682846..3682857                   attR                                                                                 N/A                 GTTACATTAAGG

#### region 23 ####
3682118..3682815                   PHAGE_Entero_P1_NC_005856: InsA; MC63_019960; phage(gi46401643)                      9.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
3682988..3683941                   PHAGE_Klebsi_ST437_OXA245phi4.1_NC_049448: tail assembly protein; MC63_019965; phage(gi100053)     1.13e-10            ShigellaflexneriMKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIS
complement(3683982..3684977)       6-phosphogluconolactonase; MC63_019970                                               N/A                 ShigellaflexneriMKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESVLPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDYSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
complement(3685237..3685341)       PHAGE_Entero_Mu_NC_000929: Gin; MC63_019975; phage(gi9633542)                        4.20e-06            ShigellaflexneriTNDQNTDLQRNAFICAGSELIVERMGSWPEVVMA
complement(3685359..3686056)       PHAGE_Entero_P1_NC_005856: InsA; MC63_019980; phage(gi46401643)                      9.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
3686190..3687143                   invasion protein; MC63_019985                                                        N/A                 ShigellaflexneriMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(3687144..3687323)       PHAGE_Entero_Mu_NC_000929: tail fiber assembly; MC63_019990; phage(gi9633541)        1.65e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(3687323..3687940)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; MC63_019995; phage(gi730985066)     2.15e-41            ShigellaflexneriMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQRIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVK
3688006..3689162                   PROPHAGE_Escher_CFT073: transposase insF; MC63_020000; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIRVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(3689207..3689641)       PROPHAGE_Escher_MG1655: IS150 transposase A; MC63_020005; phage(gi16131428)          5.88e-103           ShigellaflexneriMSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIE

#### region 24 ####
3806491..3807165                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: minor tail protein; MC63_020610; phage(gi100055)     3.30e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
3807162..3807509                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail tip protein; MC63_020615; phage(gi100054)     7.08e-54            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWQHPKRTERPGIRI
3807529..3808080                   PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; MC63_020620; phage(gi100053)     1.41e-28            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSSDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCEV
3807717..3807731                   attL                                                                                 N/A                 TGAAAATCAGATCCG
3808138..3809293                   PHAGE_Shigel_SfII_NC_021857: hypothetical protein; MC63_020625; phage(gi526244690)     5.95e-09            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWPYPHSRNIWNPAAPDGAGREWHHRWSPTGTSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVAPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPALTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQCSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
complement(3809262..3809340)       LysR family transcriptional regulator; MC63_020630                                   N/A                 ShigellaflexneriVLRCTGNSGHYHLFFFAAIYFSLA
3809336..3809824                   PHAGE_Entero_Sf101_NC_027398: transglycosylase; MC63_020635; phage(gi849122275)      2.38e-106           ShigellaflexneriKTMSGLNDVYKVAKAIKDAKSYEITTGRLNEFVKRFNRVTAANEFVANHAQRIGTAVGSTVSGPFSAVGAVAGSEIGAKVASKIRAMGGAESIESAEKLISSPEFQKAARLAVKQAPESIVDTTVRRSSAWRSFYNSLPESDKKTISRLGIMYWMNSDDNQK
complement(3809842..3810102)       PHAGE_Entero_Sf101_NC_027398: putative chromosome segregation ATPase; MC63_020640; phage(gi849122276)     1.05e-53            ShigellaflexneriMYSKYDEAQFHLRLPHELHAKIKQCAKMNNSSLNSEIIAAIEESLAKQSSASVYIDDAERMAEQQSDMVKKIVFDTLKELYKKDSN
3810224..3810571                   PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; MC63_020645; phage(gi849122277)     6.67e-76            ShigellaflexneriMSDIAANVVVSMPSQLFTMARSFKAVANGKIYIGKIDTDPVNPENQIQVYVENEDGSHVPVSQPIVINAAGYPVYNGQIAKFVTEQGHSMAVYDAYGSQQFYFQNVLKYDPDQLKQ
3811313..3811936                   PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; MC63_020650; phage(gi849122277)     3.76e-106           ShigellaflexneriMVLNNPYFEANAGGADLAIDNTGTRPVTVVINGGNFHRVSSERYTHTNIQVTSSGGGKVIVLLNGTTFQSAGDYQPSADRPYWITGNNCELIDIGCTFMEITSKATSVSAESVTRSGRINANGSVDIAPGVSSVNAHATGVYDVTFSHPLAAATNGYVVQITPISAPDSVSCDVTYIGVDTFRVTLRNTLSGAGISSSFAFSITRLL
complement(3812003..3813268)       PHAGE_Entero_SfV_NC_003444: serotype-specific glucosyl transferase; MC63_020655; phage(gi19549011)     1.16e-66            ShigellaflexneriMKIFIMRNWHKISIFILAFTLIWLRRIDILTNAQFWAEDAVFWYKDAYEQGFFSSLITPRNGYFQTVSTLIVGATTFINPIYAPLLSNFFGIIIRAIIIWFLFTDRFKFLSTTSKIFISVYLICMPGLDEVQANITNAHWYLSLYVAMIIISEESKSKLWKAHDLFFIVLSGLSGPFIIFIIASSVFKYLHLSKGVISIRGLYLFYTRLPYLAMILCGLIQATSIILTFNGTRSHAPLGFSFDVMSSIISSNVFLFSFVPWNIANAGWDNHLLSYTLSTLVITLCVFIYIKGNWQMKVFATLPILIVAFSMAKPQLADSVPQLPTLATGNGSRYFVNIHIAIFSLICVCLFQCIKNKTLKIFFKIYVSVILIAMIKLNFFITPLPDMNWSQGAELINKAKHGEAVSFTVLPPWLTLDLIKK
complement(3813281..3814198)       PHAGE_Shigel_SfII_NC_021857: bactoprenol glucosyltransferase; MC63_020660; phage(gi526244662)     0.0                 ShigellaflexneriMKISLVVPVFNEEEAIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHTTGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGILSWVGGQTDVVEYVRTERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISFLYGAWMIIDTIVFGNPVRGYPSMLVSILFLGGVQLIGIGVLGEYIGRIYLETKSRPRYLIKSRK
complement(3814195..3814557)       PHAGE_Shigel_SfII_NC_021857: putative flipase; MC63_020665; phage(gi526244663)       1.91e-73            ShigellaflexneriMLKLFAKYTSIGVLNTLIHWVVFGVCIYAAHTNQAMANFAGFVVAVSFSFFANAKFTFKASTTTMRYMLYVGFMGTLSATVGWVADRCSLPPIVTLVTFSAISLVCGFVYSKFIVFRDAK
complement(3814915..3815953)       IS3-like element IS600 family transposase; MC63_020670                               N/A                 ShigellaflexneriTLGQWVTPPEKGSVLLVPARWLNWNLKFCNCVRRMKLALSEIYKKQQRILHRSRKIRVNRTMATTISHSDVSGIWCIQERLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGTSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSLPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
3816025..3816279                   PHAGE_Shigel_SfII_NC_021857: hypothetical protein; MC63_020675; phage(gi526244690)     3.01e-56            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILK
3816350..3817563                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; MC63_020680; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
3817608..3818507                   PHAGE_Shigel_SfII_NC_021857: hypothetical protein; MC63_020685; phage(gi526244689)     9.28e-138           ShigellaflexneriLDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3818501..3819133                   PHAGE_Shigel_SfII_NC_021857: integrase; MC63_020690; phage(gi526244664)              2.69e-151           ShigellaflexneriMLTTSIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSKNKEGTNDV
3819395..3819757                   PHAGE_Shigel_SfII_NC_021857: putative flipase; MC63_020695; phage(gi526244663)       9.06e-80            ShigellaflexneriMLKLFVKYTSIGVLNTLIHWVVFGVCIYAAHTSQALANFTGFVVAVSFSFFANARFTFKASTTAMRYMLYVGFMGILSAIVGWAADKCSLPPIVTLITFSAISLVCGFVYSKFIVFRDAK
3819754..3820671                   PHAGE_Shigel_SfII_NC_021857: bactoprenol glucosyltransferase; MC63_020700; phage(gi526244662)     0.0                 ShigellaflexneriMKISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIIFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGILSWVGGQTDVVEYVRAERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISFLYGAWMIIDTLVFGNPVRGYPSLLVSILFLGGVQLIGIGVLGEYIGRIYIEVKNRPKYIIKDKK
3821130..3821315                   hypothetical protein; MC63_020705                                                    N/A                 ShigellaflexneriMENHEKTQSLICYLLFVICYLLFVICYFLFFIFYFLFFIFYFLFFIFYFLFFIFYFFIIIQ
complement(3821703..3821900)       hypothetical protein; MC63_020710                                                    N/A                 ShigellaflexneriMLGDNPNIDVVAMVPIIIVDMKIEVTLKLSDITVGNIMSAVSIMAKDTLNTESVEKRLLSEKCMA
3822747..3823796                   PHAGE_Shigel_SfII_NC_021857: acyltransferase; MC63_020715; phage(gi526244659)        0.0                 ShigellaflexneriMYNNKIDNNRKTRHDWVDALKFLGIFAIYLGHLGLGAGKLYPFVFSYHVPLFFFAAGFFTIKKNDLSIFDYIKSKFYRLMIPYFTFAFTILIINTINSGETIDYIYSHIYDIIYGVRNNQFVGTIWFINCLFVIIAIDAIFKEIVKNNIVILIISLLSFMLSQTVLNHNPLLDPQWFWNIDSAMAYWWLLPLGRCMFLELTRDRFFGKSKIGFIVFSITAIMSAYQLLNQKPLLFKIISIFNADIISSSYIQAINTIITTVGLIIFNIFIAKIICGNDFIVRAGRNTLNICGMEYITKLFIPMALAIIGFSVTIPNPICAIIYTCICVYVSDKIGHWLSRTVGGPFLIK
3838399..3838413                   attR                                                                                 N/A                 TGAAAATCAGATCCG

#### region 25 ####
3907511..3907524                   attL                                                                                 N/A                 CCAGCGGATTCGCG
complement(3913595..3914650)       PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; MC63_021215; phage(gi100053)     1.18e-158           ShigellaflexneriDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHQAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(3915850..3916902)       PHAGE_Entero_Sf101_NC_027398: transglycosylase; MC63_021220; phage(gi849122275)      0.0                 ShigellaflexneriMANYRDLLEQAGARYGVPEGLMTALGAKESSYNPAAVSSAGAVGLTQVMPGTWRDMGYTDEQMQNPEYQADAGARYLAKMYQQFGNWRDALQAYHDGPGNVMKAKRGEYTPGPEGRGYVDDRFAQWAGDPVTDSTVEQRATSAKVHPQQDPNNPFAQLEVQSSEQVSASGVQSDPNNPFAQIEQQAASQQPPQPVSSVAPKPVQQQTVNQANNAPTREEPSLMQQAGDWLTGGQSAGIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPYAQAGESIGGYLVPGAGVAGNMVIGSLADAANQRGDFAENAAINAGLSIATHGLINGVTRGVR
complement(3916903..3918234)       PHAGE_Entero_IME10_NC_019501: gp20; MC63_021225; phage(gi422934289)                  0.0                 ShigellaflexneriMATWQGSNGGLLAGIGGVNSNAPNVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEDQRNSIGTLAAGARLASSSPEAMQSWLQNNAGELARVGVNPQDVAQMYQQNPRQFGEFVDHLGMNSLGPEKYFDLQDKMQGRQVTMRGQDLDSQTAARNQAITMRGQDIQANLGQQRINLDAETNRINNENKRLDRMLSAETNDLKRQEIQSRIAANNQQLQQKQQALNDGYKDGINTLTTSMFTLNDIVSSPSLKSITGLRGVIPNVPGSQAADTQARLDTFKSQAYLTAVQAMRGMGALSDAEGKKLDQAVGSLQNSQSEESFRRNAGVILNTLNQKRNEAVGKYVQQNGIKRVEAPQASIDYLKQHPELSIDFINRYGYLPSLGQ
complement(3918244..3918936)       PHAGE_Entero_IME10_NC_019501: DNA transfer protein; MC63_021230; phage(gi422934288)     7.27e-158           ShigellaflexneriMLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSQQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGISTPWGAGIGAGIGLLGSLF
complement(3918939..3919394)       PHAGE_Entero_IME10_NC_019501: head assembly protein; MC63_021235; phage(gi422934287)     7.30e-109           ShigellaflexneriMIQFKPTRNIDLIEAVGNHTDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
3919556..3920724                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; MC63_021240; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3920999..3921763                   PHAGE_Entero_HK446_NC_019714: integrase; MC63_021245; phage(gi428782218)             0.0                 ShigellaflexneriMPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDRAPKISTPRVKNGRIRWLTEEESKRLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
3936347..3936360                   attR                                                                                 N/A                 CCAGCGGATTCGCG

#### region 26 ####
4259105..4259157                   attL                                                                                 N/A                 AAGCACCTTAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACC
4266022..4267178                   PROPHAGE_Escher_CFT073: transposase insF; MC63_022945; phage(gi26249410)             0.0                 ShigellaflexneriMGRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(4267222..4268135)       PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; MC63_022950; phage(gi557307550)            4.41e-42            ShigellaflexneriMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYARIKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKAAAYFAKLSDGTPLSVTTPVAGLFACSVGCWMFIPVVFTPGFSSRIHNAIRQTDQDRLNSSGWNRDASMVIAKSIWICVTAGNSAETESGDNVSERLRSDTEARGHVKARPVSCHPTGSSDSSIRMLLMSVGRTPTSGPTKAGCILPLLLICSHAKLSAGPCNPGQRTLSTHCWLYGGVIPKNRCWFIRIRAVSTQAMSGSRFNHTAWRGT
4268511..4268609                   acetolactate synthase; MC63_022955                                                   N/A                 ShigellaflexneriMISQIDKLEYVVKVQRNQSNPTMFNKIVVFFQ
complement(4268611..4269393)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; MC63_022960; phage(gi100021)     1.42e-11            ShigellaflexneriMETKQKERIRRLMELLKKTDRIHLKDAARMLEVSVMTIRRDLHQEDEPLPLTLLGGYIVMVNKPAPSMPVIHDVPKNHRDDLPIAILAAGMVNENDLIFFDNGQEIPLVISMIPDAITFTGICYSHRVFVALNEKPNVTAILCGGTYRARSDAFYDASNSSPLDSLNPRKIFISASGVHNHFGVSWFNPEDLATKRKAMNRGLRKILLARHALFDEVASASLAPISAFDVLISDRPLPADYVTHCQNGSVKIITPDSEDE
4269699..4269923                   ribokinase; MC63_022965                                                              N/A                 ShigellaflexneriMDIAVIGSNMVDLITYTNQMPKEGETLEAPAFKIGCGGKGANQAVAAAKLNSKVLMLTKVGDDIFADNTIRNLES
complement(4269939..4270636)       PHAGE_Entero_P1_NC_005856: InsA; MC63_022970; phage(gi46401643)                      9.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
4270692..4271396                   PHAGE_Synech_S_T4_NC_048049: hypothetical protein; MC63_022975; phage(gi100112)      1.76e-06            ShigellaflexneriLESWGINTTYVEKVPCTSSGVAPIFVNANSSNSILIIKGANKFLSPEDIDRAAEDLKKCKLIVLQLEVQLETVYHAIEFGKKNGIEVLLNPAPALRELDMSYACKGDFFIPNETELEILTGMSVDTYDHIRLAARSLVDKGLNNIIVTMSEKGALWMTRDQEVHVPAFKVNAVDTSGAGDAFIGCFSHYYVQSGDVEAALKKAALFAAFSVTGKGMQSSYPSIEQFNEFLTLNE
4271424..4272382                   MFS transporter; MC63_022980                                                         N/A                 ShigellaflexneriMNDKNIIQMPDGYLNKTPLFQFILLSCLFPLWGCAAALNDILITQFKSVFSLSNFASALVQSAFYGGYFLIAIPESLVIKKTSYKVAILIGLTLYIGGCTLFSLPRIWQPTLCSLQLFLRLRLAVSLKLQRTHTVQSVQKPMPHCGSISARPFIRLVLRQVFYWANIWFSPRGKALRSRCPETPSKFTTLRCCRTPLNRISILFWLWSWCCSFPAFQPVKWHRQVTINARQQWIRCAIWLKIRAFVVVLWLNSFMWVCRSQYGHLPSVWHWSWAISTNVMLQTSWSTALPASLLASLPTSLHGCCQLTGA
4272416..4273113                   PHAGE_Entero_P1_NC_005856: InsA; MC63_022985; phage(gi46401643)                      8.99e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWSTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(4273582..4274562)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; MC63_022990; phage(gi116221995)     4.81e-124           ShigellaflexneriMNAIISPDYYYVLTVAGQSNAMAYGEGLPLPDREDAPHSRIKQLARFAHTHPGGPPCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTTLYQDLVSRTRAALAKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKENFPHSYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSSHFSTAARRGIISDRFVEAILQFWRER
complement(4274627..4275733)       N-acetylneuraminate epimerase; MC63_022995                                           N/A                 ShigellaflexneriMNKTIMALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPREQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLDPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN
complement(4275753..4276469)       N-acetylneuraminic acid outer membrane channel protein NanC; MC63_023000             N/A                 ShigellaflexneriMKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL
4276837..4276986                   hypothetical protein; MC63_023005                                                    N/A                 ShigellaflexneriMMFAIDYEMPSLIDYRGASLYLLYQIKNHAIHTTKPDLQFASQNMSIFF
complement(4277268..4277513)       hypothetical protein; MC63_023010                                                    N/A                 ShigellaflexneriMERSNFLVAIIMLILRSLAIIPAWFVSLGHEIVTFLFILEIWGNAGDAFSSTSVGKYSFGHYDLSLPQSQLFAGRYGKQTK
4277923..4278525                   PHAGE_Thermu_P7426_NC_009804: phage XerD-like integrase; MC63_023015; phage(gi157265417)     4.59e-09            ShigellaflexneriMRNKADNKKRNFLTHSEIESLLKAANTGPHATRNYCLILLCFIHGFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRYSCGFALANIGIDTRLIDYLGHRNIRHTVWYTASNAGRFYGIWDRARGRQRHAVL
4279003..4279599                   PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail fiber protein; MC63_023020; phage(gi100052)     6.11e-10            ShigellaflexneriMSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV
4282017..4282069                   attR                                                                                 N/A                 AAGCACCTTAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACC

#### region 27 ####
4448176..4448188                   attL                                                                                 N/A                 ATTAAAATTAAAT
4461097..4462290                   PROPHAGE_Escher_CFT073: prophage P4 integrase; MC63_023975; phage(gi26251179)        0.0                 ShigellaflexneriMALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVSLADARARRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRSSELRFARWSEVDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKSMSGNRKLIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMFEVAH
complement(4462442..4464043)       PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; MC63_023980; phage(gi100053)     0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHQAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(4464063..4464410)       PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail tip protein; MC63_023985; phage(gi100054)     7.08e-54            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWQHPKRTERPGIRI
complement(4464407..4465080)       PHAGE_Stx2_c_Stx2a_F451_NC_049924: minor tail protein; MC63_023990; phage(gi100055)     1.48e-07            ShigellaflexneriMNSQTTKDIPCFRSYLPDALHLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGLPETSHGASCILNQVWNCLTLSLRNCYGRSAKKGVSDGA
4465195..4466468                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; MC63_023995; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRGARAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
4466480..4466572                   4Fe-4S mono-cluster protein YjdI; MC63_024000                                        N/A                 ShigellaflexneriPWVMPDEVDVATVVKVIDTCPSGALKYRHK
4466584..4466856                   N-acetyltransferase; MC63_024005                                                     N/A                 ShigellaflexneriMEICEGHNNFYINDEQGKQIAEIVFVPTGENLAIIEHTDVDESLKGQGIGKQLVAKVVEKMRREKRKIIPLCPFAKHEFDKTREYDDIRS
4466943..4467158                   hypothetical protein; MC63_024010                                                    N/A                 ShigellaflexneriMGRERVFLSQVIPFTEQKKEYLLYENHQSGLISFASPERLILIGVILWKVKTSSILMLFLLIIHHLIPQCS
4467083..4467244                   hypothetical protein; MC63_024015                                                    N/A                 ShigellaflexneriMEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENS
complement(4467259..4467956)       PHAGE_Entero_P1_NC_005856: InsA; MC63_024020; phage(gi46401643)                      9.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
4468228..4468464                   hypothetical protein; MC63_024025                                                    N/A                 ShigellaflexneriMTLPTTIYSFPAYLPRFSSTDKPAKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLSDWQAFNKLATKCNAYDGV
complement(4468480..4469627)       PROPHAGE_Escher_CFT073: transposase insF; MC63_024030; phage(gi26250329)             0.0                 ShigellaflexneriMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAWIKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDIFKKSRGVLRKAVRLRYAFIRDNSCCWPVRLLCRVLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKHVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV
4472025..4472037                   attR                                                                                 N/A                 ATTAAAATTAAAT
